LOCUS       DAPIWJ010000001        53687 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.001, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000001 DAPIWJ010000000
VERSION     DAPIWJ010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 53687)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 53687)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..53687
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.001"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            89..760
                     /locus_tag="RJ259_000001"
     CDS             89..760
                     /locus_tag="RJ259_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDV7365757.1"
                     /translation="MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQG
                     YDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPY
                     DPKEMYARIMSLIRRTKRVEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILE
                     YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIG
                     YKLIG"
     gene            757..1992
                     /locus_tag="RJ259_000002"
     CDS             757..1992
                     /locus_tag="RJ259_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HDV7365758.1"
                     /translation="MTKNYSIHTKLIILFVVTFFLVCVLFIVLLKIEGNTYNEEESLK
                     QENLIKNLLISYENTSGVEIGAYLGNSGFNAIQNPNLVKAIRNNGQSLFKAGGELCTL
                     SSLKYHSNLYFDVQCKDFDGLYEENTSDRVYNLLLIGFFSFSLLVVFMYFSVLKSLEP
                     LKKLRRQVAEVANGEQPDFLDYQEDEVGKIAFEFQKAFKKNQELIQSRQLFLRTIMHE
                     LKTPIGKGRIISEMIKEDRQKERLIAIFLRMDSLINEFAKIENLFSKNYNLHFKPSRF
                     SAILEEAKEHLMIDDFNKVVKVDIRYDALINVDMEIFSVILKNLIDNALKYSNNGTCE
                     LFCCKECFTIKNPGKPLAEPIEHYLEAFTREKHNQVKGMGLGLYIVSEVCKLHNFDLI
                     YFYDDGKHCFKIFFGDKEK"
     gene            1992..2564
                     /gene="recR"
                     /locus_tag="RJ259_000003"
     CDS             1992..2564
                     /gene="recR"
                     /locus_tag="RJ259_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HDV7365759.1"
                     /translation="MVKGLEKFNELVESFANLPTIGKKTAIRLAYHLCINNQIDGMKL
                     AHNIENAIRFIKPCEQCGALSENELCEICSDEERNKNILCIVESPKDILTLEESQSYN
                     GLYFVLDELNEEKLEKLKQIILKLNISELIFALTHSINSDATIFFIEDKFKGLNLTFS
                     KIAQGIPSGVNLENVDLISLNKAMNFRTKI"
     gene            complement(2561..3097)
                     /locus_tag="RJ259_000004"
     CDS             complement(2561..3097)
                     /locus_tag="RJ259_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HDV7365760.1"
                     /translation="MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFTHSEFTLDFVDG
                     GTLALQLSYIIARYDRLIVLDCIEAQGASIGDVFFFPYDAMPNKISWSGSAHEIEMLQ
                     TLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAKIMEKTLLDFLSKEGFAYE
                     KIADFSLQELADISYKNY"
     gene            complement(3094..3786)
                     /gene="cybH"
                     /locus_tag="RJ259_000005"
     CDS             complement(3094..3786)
                     /gene="cybH"
                     /locus_tag="RJ259_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HDV7365761.1"
                     /translation="MQNKEEKLQRKAEYEFSIGLRLTHWVRAIAIVILIGTGYYLSYV
                     FQSPISNGEPVNFMQAKYRLVHQAVGFVLIACIIFKVYLFFCDKVSAKERRSVWDIFN
                     IKLWIEQVKFYIFLGKHPHLKGVYNPLQFVTYFFFYLVILGIILTGLILYTHTYHEGL
                     GGLLYHILRPLEAAMGGLADVRTYHRILMWVIMIFVPVHIYMAIFNAVKGKDGAMDAI
                     ISGYKFVKEEQH"
     gene            complement(3797..5512)
                     /locus_tag="RJ259_000006"
     CDS             complement(3797..5512)
                     /locus_tag="RJ259_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HDV7365762.1"
                     /translation="MSQKIIVDPITRIEGHLRVEVVVDDNNVVKEAYAGSTLWRGIET
                     IVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLMNAALFL
                     HDHIVHFYQLHGLDWADVVSALSADVKKASDEAFKYTSNPYATGADKLLEVQQRLKTF
                     VDKGNLGPFANAYYGHPTYRLSPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQ
                     SLTVGGVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDI
                     GVNNLYTFKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHP
                     YDGKTNPNYTGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANVV
                     VNYAKGNQNVVPVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVE
                     NLKVDQSTCAPYVIDNSKEYKGRYMGHVPRGTLSHWCRIKNGVIENWQAVVPSTWNAS
                     PKDANGVGGSYEQCLIGLKIADVKQPLEIIRKIHSYDPCIACAVHVMDTKGNNLSEYK
                     VNVNL"
     gene            complement(5515..6654)
                     /locus_tag="RJ259_000007"
     CDS             complement(5515..6654)
                     /locus_tag="RJ259_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HDV7365763.1"
                     /translation="MIDYHQIESRLSALEKLPSLKDNDSITKALEKSGFSRRDFMKWA
                     GAMTAFLALPASFTPMVAKAAELADRLPVVWLHMAECTGCSESLLRSDTPTIDSLIFD
                     YISLEYHETVMAAAGWQAEENLESAIQKHKNKYILMVEGGIPMGDTEHFLTIGAHGKT
                     GYELSKMASENALAIFAIGTCSSFGGIQAARPNPSNAQPLSKVTSKTVINVPGCPPSE
                     KNIVGNVLHYLLFGELPALDVYNRPKWAYGLRIHDLCERRGHFDAGEFVHAFGDEGAK
                     QGFCLYKVGCKGPYTFNNCSRERFNQHTSWPIQAGHGCIGCSEPNFWDTMGPFEEPMA
                     SRKFDTVFGLGADSVSDKIGIGVLTLTGVAIAAHAVISSMQKDKE"
     gene            complement(6775..8616)
                     /gene="mnmC"
                     /locus_tag="RJ259_000008"
     CDS             complement(6775..8616)
                     /gene="mnmC"
                     /locus_tag="RJ259_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HDV7365764.1"
                     /translation="MKKAKLIFKDNTPFSLDFDDFYFNFKDGLNESKFVYTHSFEWKN
                     QENFIIAESGFGIGLNFFLTLKRFLETTPSKRPKKLFYISVEAFYIEKEQLREIYQKL
                     EFYEEFKELLEQFLKFYPKAKEGIYRFYFEDCFLDLVFEDIAVLKELDFKADVWYLDG
                     FSPNKNSQMFDENLIFEVARLSKKNTQICTFSSASFLQKNLKKYGFRVEKTKGFRKRE
                     MIKAYLENELEFKDKEAYFSRTFSSLKNKKVAIIGAGISSAVLAYELSLRGFEIDIFE
                     KHLELGKGASGNESGILSSLILKPKVNLGEFSELSFIEASRFYRQILDLEFKGVVEFA
                     HNDLMQERFDTQRENVLFKISKNQAFLEEGGVIFPKKLVKNLFEKSKACIYFNHEFQA
                     YKFENGCFSLKFKNDVVKSDYAVLIYAMGADAKDFVFYDEMKLSKVRGQVTHLKPFLD
                     TPFPLSSKAYICPVKDDLQVIGASYDRLNASLESKEEDDKQNIENIADFMDKNTKLEI
                     IGSKVGFRSYSSDRFMIVGNAYDEAFYKEEYKALLWTKNKEQKPAKMSCNLYFNFAHG
                     SRGFSTSVLAARYLCALINNEPLCLEKKYIHAIHPARFLIRKLKKGL"
     gene            complement(8613..10592)
                     /locus_tag="RJ259_000009"
     CDS             complement(8613..10592)
                     /locus_tag="RJ259_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HDV7365765.1"
                     /translation="MAKIFVFLVFVFTTLFGVYENELANFDKNFIGSKSEVQVKFHHQ
                     LKSLYIQSVINEDEKTKIEILKRLIISSNTLNLDDKSYANELKESGISETSINALRKA
                     VIKDIKVQNISQDTEKSTFEPIKTVQKNEKKSSNEQIKNTEKTNSKTSQAPKSSIVSK
                     AKSDDKIYVLKSSKTNQGVEFELNADLDKDQLKSFALDEKGNYRFISDFDGVLEGGKK
                     EFKFDDYRLVISQFNPKTIRIVVYAKEKIPIDISFKEEKIIFSKETTSQKKTEQVSKI
                     SEKKQDQKTEIKTKVLETKKQDKKTNNEKENQEPLYVLDVDKISNAVVLNLSDDLDEK
                     EIAVFDTKDQKFRYVVSFKGVLEGNRKSFTFGQNVITVTQYNPKTVRVVLSAPKEFKL
                     LKELDNNNLILGFYIQTTNQNVNKKATQSSSKTLNTNYKSGKLVVIDAGHGGKDSGAL
                     SDKKGSLKEKDIVLSTALKLGNELKKRGYKVLYTRSSDKFINLRDRTKYANDKRADLF
                     ISIHANAAPNATKAKSSEGVETFFLSPARSERSKKAAEKENQGDFEEINYFSKQSILN
                     FLNREKIVASNKLAIDVQKNILTQTRKKYKIVDGGVREAPFWVLVGAQMPAILIEIGY
                     ITHPNEGKRIANKAFQDLLVKGIADGVESYFYNNR"
     gene            complement(10592..11683)
                     /locus_tag="RJ259_000010"
     CDS             complement(10592..11683)
                     /locus_tag="RJ259_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HDV7365766.1"
                     /translation="MNLQPLQIGKHTIKYPIFQGGMGLGISWDRLASAVSLNGGLGII
                     SSVGTGYYEERKYASKELNAKPYGSENFYSRKGLQALINNARKVCGDAPLGCNILCAS
                     NDYARIARDACEVGFNVIVSGAGLPTNLPEFTADFPDVALVPIISSAKALKIICKRWQ
                     SRYNRLPDAVVLEGPKSGGHQGFTYEQCLDPNYQLEKLIAPVVEEAKNWGSFPVIAAG
                     GIWDKKDIENAISLGASGVQMGTRFIGTFECDASEEFKSVLLASKEEDIELIKSPVGY
                     PARGVRTNLLNLVDKRMGPKINCISNCVAPCGRGKEATKVGYCIADRLFDAWSGKKET
                     GLFFTGANGYRLDKLISVKELMEKLVNGE"
     gene            complement(11680..12885)
                     /locus_tag="RJ259_000011"
     CDS             complement(11680..12885)
                     /locus_tag="RJ259_000011"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HDV7365767.1"
                     /translation="MDIKKILAEVKRGCAELIDEERIENLIKNYYEKGENFFIKAGFD
                     PTAPDLHLGHSVVLTKMAFLQKHGAIVQFLIGDFTGQIGDPSGKSATRKKLDKEQVLI
                     NAKTYKTQVFKVLDKEKTQIKFNSTWLNELGAAGIVELTSTFSVARMLERDDFTKRFK
                     EQSPISICEFLYPLLQGYDSVALKSDIEMGGTDQKFNLLMGRQLQRVYNIGKEQAVIM
                     MPLLEGLDGVNKMSKSLNNYIGVTEKANDMYAKILSISDELMFRYYELLSQKSLEEIA
                     QIKKDIEQGNLHPKKAKENLALEITERFHSKEEANNAKSEFDRIHSQNALPSDMAEFE
                     IQGKIWLAKALVECGLESSTSAARRSISANAVSVNSQKVSDEQMYLEQGEYILQIGKR
                     KFAKLKVKE"
     gene            complement(12897..15092)
                     /locus_tag="RJ259_000012"
     CDS             complement(12897..15092)
                     /locus_tag="RJ259_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HDV7365768.1"
                     /translation="MKPIDEELLLEQLIDNVKNCKDLEAAKALLFEICGHDAILEKAV
                     DYCIFCHEGQFRKSGEPYAVHPILVATLVGFLSENKSNILAALLHDVIEDTNCTEEEL
                     REQFGSEVLKLVLGLTKIIEIREDNLISSKSKKSLTKSALTFRNMLLASIEDVGVLIV
                     KLCDRLHNMLTLDILREDKQKRISEETLVVYAPIAHRLGISSIKNYLEDLSFKYLMPD
                     EYKLIDNYINSNNQEMQLGLNEFISKIELLFLSNGFRQGSFEIQKRIKHSYSIYLKMQ
                     RKGIGIEEVLDLLGVRILVEKVSDCYLALGILHTHFNPLVSRFKDYIALPKQNGYQTI
                     HTTLFDAKSIIEAQIRTFDMHKIAEFGIAAHWKYKEDGSVVAPRLDWLTDISMQSINN
                     LENAEDYNAIELYEYAKDSLYVEDVAVYSPKGEIFTLPRGATVLDFAYEVHTKVGLHA
                     KSAYVNRIKVPLLTELKNGDIVRVVTSNDKFYRCSWIDSVKTGKAKASIREFCKQKIR
                     EINLASSINMLSFIFGVDKNRIETWIEKENLVRRIRQVATDSAYLKDIVNGLKKYAKK
                     SYWFDKYEIKEQKIGNFTLYCNHKIANVDFDFCCHPKRGDAVLAFVKGGNAIVHHKLC
                     DRADKMIDNNQDMVFIKWDSNIPKSYKLIFSLENKKGVLAEFLAFLAKMQINLLTINL
                     SSDLNSAVDYFEITMEIPDNINPDSVKDRLKSRCKILDFTSLNDAYKES"
     gene            complement(15076..15300)
                     /locus_tag="RJ259_000013"
     CDS             complement(15076..15300)
                     /locus_tag="RJ259_000013"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HDV7365769.1"
                     /translation="MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDF
                     DKNKNKLADIALYEIAENKITLEGLVETNR"
     gene            complement(15311..16030)
                     /locus_tag="RJ259_000014"
     CDS             complement(15311..16030)
                     /locus_tag="RJ259_000014"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HDV7365770.1"
                     /translation="MQERKRVLVKFSGEALAGENGFGIENSILKFIASEIKELIKNQI
                     EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESSGLEVRVQS
                     AIQMEAFCETYIMRRAQRHLEKGRVVVFAAGTGNPYFTTDTTAILRAVEIDADMVIKA
                     TKVNGVYDKDPKQFDDAVFLNTLSYDEAMQDNIKVMDDTAIALAKDNKLPIVVCNMFE
                     EGNLLKIIQGDTSLCSTVKNN"
     gene            complement(16082..17275)
                     /locus_tag="RJ259_000015"
     CDS             complement(16082..17275)
                     /locus_tag="RJ259_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDV7365771.1"
                     /translation="MRKNILIFFCFFLFVDISLANAINEKTKSLEENKRIQEQLNKKL
                     EDLASDILNGEKSLKDLSLQIESLNSQTSKLEASAKAQNQELNTLTSQNEDLLKSKSN
                     MEGKLISLMAKDFAYDLPIPQGYIESEESFMAFEILGSLNKVLNEEIFKISKDYEGVS
                     RLIDDKQAQIKKINESLKDYNAQLAKLQSLKQKQISEINKQKTDRAIYAKKLDDLQAQ
                     QEELRKTLNQLKIINDKEDANSNKNDTKIVKNNQKIRQLGSSYQGSSVKRYTGKKTIA
                     PLDSFTVKQKFGNYVDPVYNLKIFNENVVLRSNKSDAVVKNVLDGKIVFAKDTSMLAR
                     VVIVEHDNGIHTIYAHLDKIAPNIKVGKNIKKGAVVGRIKNDLTFEVTQKNFHINPLE
                     LISLN"
     gene            complement(17272..18078)
                     /locus_tag="RJ259_000016"
     CDS             complement(17272..18078)
                     /locus_tag="RJ259_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HDV7365772.1"
                     /translation="MKFFKTHLSLILPLLFMMFAFEFILITNATLKHYEELVNKDYNI
                     IVVSKTELDQNVVKTKVPFFAGLESLDPKDLIDRLKNDVSEKNLKVLKDSLPKFYTLK
                     LNSLPDQNELNSIKNQLLNIVGVSKVETFSKTHDKIYSLLILMKFVFWLFLFIIILLA
                     FVLFLKQMRIWLYEHTDRIEIMCLFGAPFWFRSFMLYKVVVVDCFIAFVILLAFFTQI
                     FDLSIIQESLKAVDIIFPPINFILHLTLIFLATLFICLLCVNTVMFKVKR"
     gene            complement(18065..18730)
                     /locus_tag="RJ259_000017"
     CDS             complement(18065..18730)
                     /locus_tag="RJ259_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7365773.1"
                     /translation="MPNLIQANKLTLGYDELVIKEASFAFKDDDFVFITGKSGSGKST
                     LLKSFYGDLEPISGKLEVCGSLMNKIGNLELLKLRQRIGIIFQDYKLVQEYSVEKNVM
                     LPLMIKGYSKKVCHDQATKLLKHVNLTFKADKLPNQLSGGEQQRVAMARALAHNPKLL
                     LCDEPTGNLDEYSSDIIWTLLKSARELLGTCVIVVTHRIPSNLRVDYRRFNIENGKMN
                     EIF"
     gene            complement(18800..19978)
                     /gene="trmB"
                     /locus_tag="RJ259_000018"
     CDS             complement(18800..19978)
                     /gene="trmB"
                     /locus_tag="RJ259_000018"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HDV7365774.1"
                     /translation="MPNFKSKKIKEINLPYSKDDVEFLWLAKNDNVSLIYTKVQEESF
                     FLQIKKAQNGFVIKGDKHTKPSKIGYLQKALKIFKEGFCEDIINEAFGLKNNALIEKT
                     PFIVDNFDELLSRLQGKIYIEIGFGSGRHLLYQAKENPNVLILGVEIYNPALTQVAKL
                     AKAQNVNNILLIQSDARLLLSVLKSKSVEKIFLHFPVPWDKKPHRRVIGKDFCKECAR
                     VLVQNGRFELRTDSFEYFNFTLEQFLTFPAPKFSLRKNENLEISSKYEDRWKKQEKNI
                     YDLWVWNFNQECKNYELNEFNLSSVEFSKEDLKKIEQNFKNITIKKDDFFLHFESIYK
                     QDENLLLKVAFGAFNKPEHCYLHLDKTIDFAFKEPFKIQENIKAINELKEILKVQFKI
                     "
     gene            complement(19978..21213)
                     /locus_tag="RJ259_000019"
     CDS             complement(19978..21213)
                     /locus_tag="RJ259_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HDV7365775.1"
                     /translation="MMKRFRLSFYLSFLTLLLSACSVSQMNSLASSKEPAVNESLPKV
                     ESLKSLSDMSNIAFEWEPLYNENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKL
                     EPGTKYRYMMKSFNEQGQISEDGKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHP
                     DFRVDSYIIERTKGDDKEFKKIAEVKNRLNAEYIDSDLKPNENSSYRIIAVSFNGIKS
                     GSSQVVSSTSKALPPQVEHLSASTDGSSKIILTWDAPTYEDFSYYKVYSTSSSFLPFS
                     VLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLGNPLAPSIILA
                     QSTSEGINLEWSDNDTRAVEYEVRRYGGEQNAVFKGIKEKRLKDVKALPGVEYSYEVI
                     AIDSAELRSEPSSKVKAAQ"
     gene            complement(21158..22126)
                     /locus_tag="RJ259_000020"
     CDS             complement(21158..22126)
                     /locus_tag="RJ259_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDV7365776.1"
                     /translation="MQTFLVDENSRLDVFLAKKLNQSRNQVALLIEKDCVQVNDKIQD
                     KNSFKLKNGDIISIASLKLCNEIKPQFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASS
                     VKNATLVDWLIEKKYTLSNLGGEIRAGLVHRLDKDTSGAILIAKNNFTHQKLSEQLAD
                     KSMGRIYLALIDLPLKEDKIIVEKFLMRSPSNAIKKIAIDKENKFSKNAKSAFINVVK
                     TENLTLMAAKLFTGRTHQIRAHLASLNRYILGDSLYGYKGKYDCRIMLHAYFLYFIHP
                     KTKEQIFVKAPLMEDFKNIMFEQINLGENDEKISLEFLLEFFNSFA"
     gene            22204..23304
                     /locus_tag="RJ259_000021"
     CDS             22204..23304
                     /locus_tag="RJ259_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HDV7365777.1"
                     /translation="MFRLDRRILTHFDYMQPILFLPIILISFFLIFEANPFLAEKQFV
                     YACVGLFAFMVFFFFPIRKFIWIIPVAYWINIFLLLSVDIFGVEKLGAKRWLEIPFTH
                     FTIQPSEIFKPSFILMLAYLIYQNPPPKNGYKLKQFIKLSFYIILPFLLIAKEPDLGS
                     AMVLLLVGFGVLFIMGVHYKIWLSIVIAISVSSPIIYTHLLKPYQKQRIHDFISEKPS
                     YQVAQSMIAIGNGGLTGKSQDEATQTHFKFLPISTSDFIFAYMIERFGFIGGLTLIIF
                     YILLIFHLLSLNYKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFS
                     YGGSSFTIFMIFFGILQHLITFRYFWTDIKAK"
     gene            23358..23434
                     /locus_tag="RJ259_000022"
     tRNA            23358..23434
                     /locus_tag="RJ259_000022"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:23392..23394,aa:Ile,seq:cat)
     gene            complement(23543..23618)
                     /locus_tag="RJ259_000023"
     tRNA            complement(23543..23618)
                     /locus_tag="RJ259_000023"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(23583..23585),aa:Phe,seq:gaa)
     gene            23758..25101
                     /locus_tag="RJ259_000024"
     CDS             23758..25101
                     /locus_tag="RJ259_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HDV7365778.1"
                     /translation="MKQFGLDRRTFKILLAGYIIIALFGALLLHSSWAHTTPIDFLDA
                     FFTSTSAVSMTGLVVKNTAVDFTLAGQIIILALVQIGGLGYMGIGLFVYILIRKKVGF
                     SARNLLKESLFYPSMDGLFKFFKKVLLFIFTIELIGAILLTMRFALEMNFKKALWFGI
                     FHSISAFNNSGFTIFEHGFIAYKHDIAINLIITSLIIIGGLGYFVLVELYFFQRKKLQ
                     NLSLHTKMVVVASIFLIFSSTLIIFAFEYSNPQTIGHFSFFDKILSSYFIAINYRTAG
                     FNTLDMGHLHDASLFFGSLFMVIGGAPGGTAGGMKVTTVMVLLLYAYWSIRDGRVRIF
                     GHEIPRETISKAFIIAVGSAVYIVIAVILLSLLESKFDFIALLFETSSAFATVGISVG
                     NGGTLSLCALFSDPSKVIIIIMMLSGRIGVFAFLLSVFKQDKAIHLKFPEGKVNL"
     gene            25112..25762
                     /locus_tag="RJ259_000025"
     CDS             25112..25762
                     /locus_tag="RJ259_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HDV7365779.1"
                     /translation="MKNLNYGIIGLGKFGSVVADELIAGGHTVIVADKDEEALKSIQN
                     PPSYAYILDSTNISALKEAGFHDVEVVIVSIGENVEKSILTLMALKDIGVKNIIAKAT
                     SNIHGQILSKLGATKVIYPEKESAKRLVKEFLTKDADYEVFDLSANTIRAIKINIDEK
                     LAGNSLKHVAQNMKVISYKKLNSDWEILPDLETTTVYSGDVVILLGTVKELREFEH"
     gene            complement(25759..26430)
                     /locus_tag="RJ259_000026"
     CDS             complement(25759..26430)
                     /locus_tag="RJ259_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthetic enzyme MqnA/MqnD family
                     protein"
                     /protein_id="HDV7365780.1"
                     /translation="MIFGKIDYINLLPLHIYLKKYPLPNGYKASMEYKKGVPSKLNKD
                     LFYRRIDAAIISSIESARKKYKNLDLGICANKRVLSVLVEKNTSNAKDPSSATSNALA
                     KVLKQDGKVIIGDKALKLYLKDPSKYIDLCAKWHEKTGLPFVFARFSCVQKKALYKQI
                     LKKFPKTKIKIPYYILQNYAKTRDLDIKDVRYYLDEVIYHKISTKEKTALKRFVKACK
                     ALNLA"
     gene            complement(26436..27062)
                     /gene="upp"
                     /locus_tag="RJ259_000027"
     CDS             complement(26436..27062)
                     /gene="upp"
                     /locus_tag="RJ259_000027"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HDV7365781.1"
                     /translation="MKNIHCINHPLIEHKLGILRAKETKPFQFRMLIDEISSFLLFEA
                     SKDFSLKEIEISTPIQKTTVKKLDEKIMICPILRAALGMLESVFKMIPDASVGFLGFV
                     RNEETLKADFYFQKLPKDAKKRTAIVIDPMFATGGTAIDACNFLKSQGVKKIKFISIL
                     AAPQGLKKFSQMHDDVEVFVACIDEGLNEKGYIIPGLGDAGDRVFNTL"
     gene            complement(27059..28294)
                     /locus_tag="RJ259_000028"
     CDS             complement(27059..28294)
                     /locus_tag="RJ259_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HDV7365782.1"
                     /translation="MNLKEEALKYHLGGKIDIVPSKPMATSYDLSLAYSPGVAEPCLE
                     IAKDNELAYTYTNKANLVAIVSDGSAVLGLGNIGAQASKPVMEGKACLFKKFANVNAY
                     DIEINVHSIEEIVNFCKALAPTVGGINLEDIAAPKCFEIEAALQDLGIPVMHDDQHGT
                     AIISTAGLMNAMEISGKKFKDIKVVVSGAGAAGIASAKMYRNLGVENIILVDSKGVIS
                     KDRNDLTPQKLEFAVDSKEKTLKEVLKGADVFLGLSAPKILDDEMVLSMAKDPVIFAL
                     ANPIPEVMPEDVARLRKDAIVGTGRSDYPNQINNVLGFPFIFRGALDVRASKITENMK
                     VAAAKALADLAKLPVSDAVKKAYNLSTLEFGRDYVIPKPFDERVKAAVSTAVAAAAVK
                     DGVAKVKNFDEKAYFESLK"
     gene            complement(28296..29687)
                     /locus_tag="RJ259_000029"
     CDS             complement(28296..29687)
                     /locus_tag="RJ259_000029"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HDV7365783.1"
                     /translation="MHEKLTTRFAPSPTGYLHIGGLRTALYNYLYARKNGGNFLLRIE
                     DTDLKRNSKEATKAIIEAFKWCGLEHDGEVTYQSERFDLYKEYVKKLLDEGKAYYCYM
                     SKEELEELRAKQEAAKERPRYDGRYREFTGTPPQGIEPVVRIKAPQSGEIVFEDGVKG
                     EVRFKAEDIMDDFIIARSDGTPTYNFTVVIDDALMGVSDVIRGDDHLSNTPKQIVLYE
                     ALGFKIPKFFHVAMIHGEDGKKLSKRHGATDVMEYKEMGILPQALLNFLVRLGWSHGD
                     DEVFSLEDLKKLFDPYHINKSASCYNAKKLEWLNAHYIKTLPFEEINRQLKDLGFDLS
                     VYEKAGFLLDLLRERAKTLHDIINGAKSIVNAPQNYDENAVQKFVNKNNLELLQAFAN
                     TLKDQKTGKDFEDFTNDFLEKKEAKLKDLAQPIRIALTGSAVSPSIFEVLEFLGVDEC
                     KKRIDNFLKVRGK"
     gene            29752..30567
                     /gene="salC"
                     /locus_tag="RJ259_000030"
     CDS             29752..30567
                     /gene="salC"
                     /locus_tag="RJ259_000030"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SalC"
                     /protein_id="HDV7365784.1"
                     /translation="MKKILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKAL
                     KIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSK
                     NQSYEQFRTNFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANI
                     YLSNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGGFSPVLNGKNGY
                     ELYEVKSKDGTQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLR"
     gene            complement(30605..31936)
                     /locus_tag="RJ259_000031"
     CDS             complement(30605..31936)
                     /locus_tag="RJ259_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HDV7365785.1"
                     /translation="MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLK
                     YADASICIGKARSSESYLNIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIK
                     FIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKA
                     AAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDS
                     FGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFE
                     FLVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPSQESIKLNGHS
                     IECRITAEDSKTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPAYYDSMIGKLVVWA
                     EDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDTNYLARH"
     gene            complement(31938..32393)
                     /gene="accB"
                     /locus_tag="RJ259_000032"
     CDS             complement(31938..32393)
                     /gene="accB"
                     /locus_tag="RJ259_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HDV7365786.1"
                     /translation="MTKEEIKELVNLFAEANISKIKIKEQDGFEIELERDMCCDVPAP
                     VCPPVPAPQPINVSVVNEAQPSQSVKSNKPSINSPMVGTFYQAPSPGAAPFVKVGSTV
                     KKGDTIAIIEAMKIMNEIEAEFDCRIAEILVADGQPVEFGMPLFAVEKL"
     gene            32541..33101
                     /locus_tag="RJ259_000033"
     CDS             32541..33101
                     /locus_tag="RJ259_000033"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HDV7365787.1"
                     /translation="MGLKADNWIRKMALEHKMIEPFCEANIGKGVVSYGLSSYGYDIR
                     VGREFKIFTNVNSTVVDPKNFVEENVVDFEGDVCIVPANSFALARTIEYFKMPDNVLA
                     ICLGKSTYARCGIIVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDE
                     KCDTTYKDKKGKYQAQTGITLPRILK"
     gene            33151..34155
                     /gene="pseB"
                     /locus_tag="RJ259_000034"
     CDS             33151..34155
                     /gene="pseB"
                     /locus_tag="RJ259_000034"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HDV7365788.1"
                     /translation="MFNGKNILITGGTGSFGKTYTKVLLENYKPNKIIIYSRDELKQF
                     EMASVFNAPCMRYFIGDVRDKERLSAAMRDVDFVIHAAAMKHVPIAEYNPMECIKTNI
                     HGAQNVIDACFENGVKKCIALSTDKACNPINLYGATKLASDKLFVAANNIAGNKQTRF
                     GVTRYGNVVGSRGSVVPFFKKLISEGAKELPITDTRMTRFWISLEDGVKFVLSNFERM
                     HGGEIFIPKIPSMKITDLAHALAPNLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENY
                     YAISPSIKFVDKDNDFSINALGEKGQKVKDGFSYSSDNNPLWASEKELLEIINHTEGF
                     "
     gene            34157..35287
                     /gene="pseC"
                     /locus_tag="RJ259_000035"
     CDS             34157..35287
                     /gene="pseC"
                     /locus_tag="RJ259_000035"
                     /EC_number="2.6.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HDV7365789.1"
                     /translation="MLTYSHQNIDQSDIDALTKALKDEILTGGKKVDEFEEALCEYVG
                     VKHACVLNSATSALHLAYTALGVQEKIVLTTPLTFAATANAALIAGAKVEFIDIKNDG
                     NIDEKKLEARLLKDSKNIGAISVVDFGGNSVEIDEISSLAKKYNIPLIDDASHALGAL
                     YKSEKVGKKADLSIFSFHPVKPITTFEGGAVVSDNEELIDKIKLLRSHGIVKKRLWDS
                     DMVELGYNYRLSDVACALGINQLKKLDHNLEKREEIASFYDKEFEKNPYFSTIKIKNY
                     KKSSRHLYPILLFPEFYCQKEELFESLLHAGIGVQVHYKPTYEFSFYKKFLGEIRLQN
                     ADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKGYCG"
     gene            35280..36586
                     /locus_tag="RJ259_000036"
                     /pseudo
     CDS             35280..36586
                     /locus_tag="RJ259_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
     gene            36583..37373
                     /locus_tag="RJ259_000037"
                     /pseudo
     CDS             36583..37373
                     /locus_tag="RJ259_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858419.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside N(3)-acetyltransferase"
     gene            37394..38185
                     /gene="legH"
                     /locus_tag="RJ259_000038"
     CDS             37394..38185
                     /gene="legH"
                     /locus_tag="RJ259_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase LegH"
                     /protein_id="HDV7365790.1"
                     /translation="MKYLLEFENKKYSTYDFIETFYKLGLQKGDTLCVHTELFNFGFP
                     LLSRNEFLQTILDCFFEVIGKEGTLIMPTFTYSFCKNEVYDKINSKTKMGALNEYFRK
                     QTGVKRTNDPIFSFAIKGAKEELFLKDTTSCFGENCVYEVLTKENGKYMTFGGQGHTL
                     THYAEEQFNVFYRYHKIFSGILIDENNISYNKTISYYVRKLDISSEPNLINIINIVNN
                     TKNFKKNNFAGDHINIYNAKEYIEILWKKLDINQTILIENYDTIY"
     gene            38216..38446
                     /locus_tag="RJ259_000039"
     CDS             38216..38446
                     /locus_tag="RJ259_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDV7365791.1"
                     /translation="MEKQFYEILENILETKVDENTNLSMENCKNWTSLAHIDIIMSLE
                     EEFEIKFNKEDLSLLKSQSALLEKIQTLKAEK"
     gene            38443..39336
                     /locus_tag="RJ259_000040"
     CDS             38443..39336
                     /locus_tag="RJ259_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDV7365792.1"
                     /translation="MKENIEKLFQAIAQKNPIHSKYLKKIEFSQEDEEEFDKLISYYI
                     QDGISIKEQCDCYLLILNDTLEETKFFIENGAYRYSSFDEVKDKVYFNESYMKQYMIG
                     LALSSFVWITHIKVRKYFSQYLQNFTPKTTYFEIGPGHGEYFARAVKSGKFSAFYGLD
                     ISPTSCELTQKMVKQQVGGLITKCDFLCQDFFTYDFDKKADLIVIGEVLEHVEKPLEF
                     LKRSKELLSDGGEIFATIPINAPAIDHIYLFSHPDEVKDLIEKSGLKFKAYECFMAND
                     YSLEKALKFKNAITMAVVLNA"
     gene            39329..39745
                     /locus_tag="RJ259_000041"
     CDS             39329..39745
                     /locus_tag="RJ259_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDV7365793.1"
                     /translation="MLNTTLNLPLHHIGVACKNLEKERECFFKLGFYKESEFIDEKQG
                     VRGEFIIPCNEAFPQYRFELLQNLNDKGPLDSYLKNNTKMYHLAYESKNIAQDLILLE
                     QQGGICIVPIMQASYFAKLCFIMMPNRLLIELVELK"
     gene            39742..41304
                     /locus_tag="RJ259_000042"
     CDS             39742..41304
                     /locus_tag="RJ259_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDV7365794.1"
                     /translation="MNLFSPHLKRNELIKFAKELDFSKSQDLLINVHRNHAFEGVQSI
                     IAPFLHFANLRAEFNFSSYDDSLSFDNFKEASLELLWLDLTRYKNNVQNFIEERLLEL
                     RKISQNPILVLSLGEFKTDKKILNCEIFNIEKLIKEYFDEDDILDLAKEELTGSKLNN
                     KALIFLAQILGLSLIPALVKPALKALVLDLDNTLYQGILGEEGIDNLNLSPLHKTLQE
                     KIKTFKKQGFLLALASKNEEKDAKKLFEIRKDFILQWDDFDTRMINWEPKGENILKIA
                     KKFNINTNAMLFIDDNIAELENTKFTGVKTLLCDENILYKIKLFPNLLKLSNTKEDQI
                     RAKDIAANALREELKSLSDEEYFQNLEISLNFSKNDLQNIPRISELLGKTNQFIANYT
                     RLNQEKVAQHMQKELIVSVSMSDKLSDSGIIAIFVFSCKEGNLFIDDLCISCRALGRK
                     LETRMFFKAFELALHFFDLKNNNARLYYQKGERNMPFLSFLEQISKKFEKNSALIPFQ
                     NLNFKGLIIHEN"
     gene            41294..42355
                     /locus_tag="RJ259_000043"
     CDS             41294..42355
                     /locus_tag="RJ259_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HDV7365795.1"
                     /translation="MKTRFDKAKISGICVSVPEHKICIDDELESVFSNNIKTLKRMKK
                     VIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACY
                     LHQLLNLSSKTIAFDLGQACAGYLYGLFVAHSLIQSGLGKILLICGDTLSKFIHPKNM
                     NLAPIFGDGVSATLIEKTDFNEAFFELGSDGRHFDKLIIPKGAMRIPKADIFNDDSLM
                     QTEEFRQLENLYMDGANIFNMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVD
                     CIKEELKLNDDKVPNFIMEKYANLSACSLPALLCELDTPKEFKASLSAFGAGLSWGSA
                     VLNFKDLYTKDILIYTKEK"
     gene            42355..42576
                     /locus_tag="RJ259_000044"
     CDS             42355..42576
                     /locus_tag="RJ259_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDV7365796.1"
                     /translation="MTKTEFLEELKEAMHRDENLSEDMLLDDIDEWDSLAFVSVMVLY
                     KNLFTLKITAEDLKNCQKVSDLINLAKLD"
     gene            complement(42590..43804)
                     /locus_tag="RJ259_000045"
     CDS             complement(42590..43804)
                     /locus_tag="RJ259_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDV7365797.1"
                     /translation="MLINQTFEIDSCDDVELNIKRTSKLEYRISYDDEKEMKAIVFII
                     GGFGANANISFLDFDREYIAKNFDVVAVHVFYHCFCHRRSNVEKYSAYKFFQEEDIEN
                     IKNLLNQFHFSYGEINNDNALFLANSLVKHVENLKMQNKLDHNFKLNFTSTIVPPNGD
                     YQNYGIMAAIDHINALKDLVKRFPKFADLPKIYGGGSYGGYLSLLIAKIAPWYVDGVI
                     DNSGSALPSPMFILERESGQYDYFEEYPHNKIGFFIKTYWNADVGSKYFFHTENYLIR
                     IIPNLAHLTIQANVNKNIVLVSYHSLKDPFNTAKDKQTLFLAYKELGYDATLHLIKDE
                     SEIDGRFIKDLNHGMRISDKALFRKELPLMLEKLQKRKSFMQENSISYPCGNKVFIFK
                     DVGDKFELVIKD"
     gene            complement(43817..44389)
                     /locus_tag="RJ259_000046"
     CDS             complement(43817..44389)
                     /locus_tag="RJ259_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDV7365798.1"
                     /translation="MDGVIDNSGSALPPLIYILGREMEGGCDYVFNDPNTLIECFLKT
                     HWTRKENSPYFFNNENYFIRTLLNKDHLILQSQKNKNIIYVSYHSDKDPLTPANFKQQ
                     TMQILKILGYDVSLNLVDENKIDGKFIKNLDHGCGIPDKALFRKELPLMLEKLQKRKS
                     FMQENSISYPCGNKVFTFKDIENQLKLIIN"
     gene            complement(44410..45024)
                     /locus_tag="RJ259_000047"
     CDS             complement(44410..45024)
                     /locus_tag="RJ259_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDV7365799.1"
                     /translation="MLINQTFEIDSCDDVELNIKRTSKLEYRISYDDEKEMKAIVFII
                     GGYGANANIHFLDSYRNYIAKKFDVATINVFYHCFCQRRSDVEKYSAFTIFTKDDVSN
                     LSQVLLEIGVNINVNLENAQQCYELLNQNITTLKSQGKLAQNYQAKFTSTFVPPNGDY
                     QNYGIMAAIDHINALKDLIKRFPQFSNLPKIYGGGLMEDTYLYS"
     gene            45085..46593
                     /locus_tag="RJ259_000048"
     CDS             45085..46593
                     /locus_tag="RJ259_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HDV7365800.1"
                     /translation="MTTHIYDFLEKSLIKFSEKTAFVEPFAKERKEITYKDFDLFSKK
                     LASEILKTLKNDNPTQVPVLIILPKGIDCLISFFGVALSGNFYTLLDEKSPKERVEKV
                     IEVLKPKLFITSKDLNFNLDLPTLYTQDFESFDIDESLIKHAKEKHIDTNLLYVFFTS
                     GSTGIPKGVSIAHKSVIDYTFWVCETFKFDENEILANQAPFYFDNSILDIFSNVKSGA
                     TLHLLPNHLFAFPNKILECLEKEKVSTIFWVPSVLIYFANTEALNNFSLNALKKILFC
                     GEIMPNKQLNIWRKHLPNALFANLYGPTEITDVCSFYIINRTFKDEELLPIGKACKNT
                     ELLVFDENMNFISPKQISVKGELFVRGTSLSLGYYNDKEKTKQAFIQNPLHDNYLDLL
                     YKTGDIVSYNEFGELLCYGRADNQIKYMGHRIELGEIESVINSHVNIKNSACIFKEDI
                     ICFYESEEEINFKAFLKDKLPSYMIPKNFIKLDKFKLNQNGKIDRKVLKELV"
     gene            46632..46859
                     /locus_tag="RJ259_000049"
     CDS             46632..46859
                     /locus_tag="RJ259_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDV7365801.1"
                     /translation="MQEIKQFFINIERTDINESMENLVSEDFIDSIDIMALVAEIEKF
                     YKKPLKAEFITPENFESFENIKKMLETAMKD"
     gene            complement(46856..47926)
                     /locus_tag="RJ259_000050"
     CDS             complement(46856..47926)
                     /locus_tag="RJ259_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDV7365802.1"
                     /translation="MTAYLHIGTTNTGNQEKQGFLMQNEEKLLQKAYIYPKSLRVANR
                     HWALVDMVLELVQKEDILKKESVLSHITNERLLRAIENFKSESALHKDKKFIFSAEGI
                     VWDFSTKKHVEILEKIMRELGFTQIYIIVYFRDTLGYLNSHCSQDHKNNMGYYSADFA
                     PQDHPRKYIFDYEWICKTHAEVFGEENLIVRLLREDYVGGTLLKDFVYHLGLEWDESF
                     VLKQTKNESFNLLGMELMSRLNQKDLKQDNLNSLLFMARRKFEGSKEKRLKFAVQKDI
                     AKVYVDYFASSLEWVKNKYFPHKNSLFTPVNWEEYEQNYTLTHMLSKDWDDVADFIAQ
                     IIVSKNEIISSLKEQLELARKD"
     gene            complement(47948..49159)
                     /locus_tag="RJ259_000051"
     CDS             complement(47948..49159)
                     /locus_tag="RJ259_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDV7365803.1"
                     /translation="MLINQTFEIDSCDDVELNIKRTSKLEYRISYDDEKDIKAIVFIV
                     GGFGANANISFLDFDREYIAKNFDVVVVHVFYHCFCARQSIDQKYNPKLIPNQDDLER
                     INGILKNINLGHLSVNKDNFEQIIPLIEQKVNEMKQAGLVDESQKIELSCDFIPPNGD
                     YQNYGIMAAIDHINALKDLVKRFPKFADLPKIYGGSYGGYLALLIAKIAPWYVDGVID
                     NSGVCLPFLACILGREMNQGEFYFEGSGYRLYCFVYKYWNRNMNSSYYFGDENYLIRA
                     ILNSNHLQIQSNLNKNTIFVSYHSIQDMGAPVQNKIELYKCYQELGYDATLHLIKDEN
                     DIDGRFVKSLEHGLRMTDRALFRKELPLMLEKLQGRKSFMQENSISYPCGNKVFVFKD
                     LEDKFELEMIN"
     gene            49238..49936
                     /gene="pseF"
                     /locus_tag="RJ259_000052"
     CDS             49238..49936
                     /gene="pseF"
                     /locus_tag="RJ259_000052"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HDV7365804.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLISYSIENALNSGIFD
                     EVVLSSDDEEIIEVALKYGAKAPFVRDKNLSDDYASSTAVVQNAIEILQSQNQIYDHV
                     CCLYATAPLLNKDILKQAYEKFIQNQSKFLFAATEFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAYHDAGAFYFGTSKAWLEEDFIFKPHSSVFVLPRNLVCDIDTIQDLE
                     FAKILYKVNHESAF"
     gene            49920..50744
                     /gene="pseG"
                     /locus_tag="RJ259_000053"
     CDS             49920..50744
                     /gene="pseG"
                     /locus_tag="RJ259_000053"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HDV7365805.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRDLVLAKQYSDVSFACLPLEGSLID
                     EIPYPVYELSSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     IKPHHCDILLNANAYAKASDYEGLVPFKCEVRCGFSYALIREEFYQEAKENREKKYDF
                     FICMGGTDIKNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAKLHNNIRLFIDHEN
                     IAKLMNESNKLIISASSLVNEALLLKANFKAICYVKNQESTATWLAKKGYEVEYKY"
     gene            50741..51214
                     /gene="pseH"
                     /locus_tag="RJ259_000054"
     CDS             50741..51214
                     /gene="pseH"
                     /locus_tag="RJ259_000054"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HDV7365806.1"
                     /translation="MIKLKNFTELNSQEIELIFKWRNHPDINQFMKTKYIDFEEHLRF
                     LKKLHQDSSKKYFLVFQDEQIIGVIDFVNITTKSCEFGLYAKPNLKGVGQILMNEIIK
                     YAFENLKVNTLKAYAFKDNRKALKLYQQNHFTIYDEDKDFYHICLKQSDCKALPS"
     gene            complement(51179..51925)
                     /gene="hisF"
                     /locus_tag="RJ259_000055"
     CDS             complement(51179..51925)
                     /gene="hisF"
                     /locus_tag="RJ259_000055"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HDV7365807.1"
                     /translation="MLKTRIIPCVLLKNGQLVKSIEFKDFRTIGHLTSTMRIYNARNV
                     DELIILDIDASKSGEIDFESIEDLAKECFMPLTIGGGIKTLEDIQKILNLGADKISIN
                     SKALEDMDFISKAANRFGSQCIVCSIDVKRKGEQFCVYDRGKLLEKSPLELALEYEKK
                     GAGELLLTSVDFEGKAKGYDLELLKIFQNKLKIPLIINGGLGKPSDGVKALNLGADAL
                     AGAYIFHFSKYTPKDVKEELARQGFAVRLL"
     gene            complement(51926..52531)
                     /gene="hisH"
                     /locus_tag="RJ259_000056"
     CDS             complement(51926..52531)
                     /gene="hisH"
                     /locus_tag="RJ259_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HDV7365808.1"
                     /translation="MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLP
                     GVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFI
                     EGEVVKFEEDLNLKIPHMGWNELEILKQVPLYQGIDNKSDFYFVHSFYVKCKDEFVSA
                     KAQYGHKFVASLQKDRIFATQFHPEKSQNLGLKLLENFARL"
     gene            complement(52528..53664)
                     /gene="pseA"
                     /locus_tag="RJ259_000057"
     CDS             complement(52528..53664)
                     /gene="pseA"
                     /locus_tag="RJ259_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid biosynthesis protein PseA"
                     /protein_id="HDV7365809.1"
                     /translation="MKFCKKCVMPDTKPDLHFDEEGICDACHSQEAKNQNINWQEREK
                     EFFELIKKYKKHPVYDCVIGVSGGKDSTFQVVKMLELGLNPLCVCFEPSVPTKIGRKN
                     LDNLNHLGVDLIHIKRDPKVYQKLAREAFVRTGDNEWQNHLGIFTSVPRIAVNFGVPL
                     IIWGESPQIEYGGPASSKNKNILGREWLEEFGGLLGNRASDMLGVNGITEKDLFLYTY
                     PSDEELQRVGVTGLFLGYYFKWDYKKILEISKKYGFLTLDHPVETTYENFENLDCYSN
                     HVHDYLKYCKYGFGRATDNACLDIRLGYISREEGVRLVQKYDGKPPKKAIKKYLEFSG
                     FSEEEFQKIVDSFTNKKIFKRDENGKFIRDYDGSLVRKDECVLK"
BASE COUNT        18324 a         9277 c         7419 g        18667 t
ORIGIN      
        1 gcaaaaataa aatcaataat ttatcaaatt ttaaataaaa ttatgtaaag attttaaaga
       61 ctacataaaa atttacaagg acactagaat gattaatgtg ttgatgatag aagatgatcc
      121 tgactttgca caattattat ctgaatattt agcgcaattt aatattaaaa tcacaaattt
      181 tgaaaatcct aaaagtgctt taaatgtggg tattcaaggc tatgattgtc tgattttaga
      241 tttaacttta cctggaattg atggtcttga agtttgtaga gaaatccgac aaaaaagcaa
      301 tattcctatt atcatctcat cggctagagg tgacttaagc gataaagttg tggggcttca
      361 aatcggtgct gatgattatc taccaaagcc ttacgatcca aaagaaatgt atgcaaggat
      421 tatgagtctt attcgtcgca caaaaagagt tgaacacact aataatgaaa atattaactc
      481 tgctttcaaa attgatgaaa gaagacatga gatcacctat gaagataagg ttttaacact
      541 tactcctgct gaatttgaaa ttttagaata ccttatccaa caacacggat atagtgtttc
      601 aagagaacag cttgtaagtc gctgtaaaaa tctaaaagat aaagattcta aaagccttga
      661 tgttatcatc ggtcgcttaa gggtaaaaat aggagatagt tcaaaatctc caaaacatat
      721 tttttctgtt agaggtatag gatataaact gataggatga caaaaaatta ttctattcat
      781 accaaactga ttattttatt tgttgttact tttttcttgg tttgtgtgct ttttatcgtt
      841 cttttaaaaa tagaagggaa tacctataat gaagaagaaa gtttaaaaca agaaaatctt
      901 ataaaaaatt tactcatctc ctatgaaaac acttcaggtg ttgaaatagg agcttatctt
      961 ggaaacagcg gttttaacgc tatacaaaat cccaatcttg taaaagctat aagaaataat
     1021 ggacaatcac tttttaaagc aggcggagag ctttgtactc tttcttcttt aaaatatcat
     1081 agcaatcttt attttgatgt tcaatgtaaa gattttgatg gcttgtatga agaaaatact
     1141 agtgataggg tttataatct tttattgata ggatttttct ctttttcttt gttggttgtt
     1201 tttatgtatt tttctgtatt aaaatcctta gaacctttaa aaaaattaag aagacaagtt
     1261 gccgaagttg caaatgggga acaacctgat tttctagact atcaagaaga tgaagtaggc
     1321 aagatcgcct ttgaatttca aaaagctttc aagaaaaacc aagaattaat ccaatcaaga
     1381 caacttttcc taagaacaat catgcatgag ttaaaaaccc ctataggaaa agggagaatc
     1441 atttctgaaa tgatcaaaga agacagacaa aaagaaagac ttatcgctat atttttacgc
     1501 atggattctt tgatcaatga atttgccaaa atcgaaaatt tattttcaaa aaactacaac
     1561 ttacacttta aacctagtcg ttttagcgct atacttgaag aagctaaaga acaccttatg
     1621 atagatgatt ttaataaagt tgtaaaagtc gatataagat atgacgcttt aatcaatgtt
     1681 gatatggaaa ttttctctgt aattttaaaa aatcttatcg ataatgcctt aaaatactca
     1741 aacaatggca cttgtgagct tttttgttgt aaagaatgtt ttaccattaa aaatccaggc
     1801 aaacctttag cagaacctat agagcattat cttgaagctt ttacaagaga aaaacacaat
     1861 caagtcaaag gtatgggact aggactttat atagtttcag aggtatgtaa actgcataat
     1921 tttgatttga tttattttta tgatgatgga aagcattgct ttaaaatttt ctttggagat
     1981 aaagaaaaat aatggtaaaa ggcctggaaa aattcaatga acttgttgaa agttttgcaa
     2041 atttacctac cataggaaaa aaaaccgcca taaggcttgc ttatcacctt tgtataaata
     2101 atcaaatcga tggtatgaaa ctcgcacaca atatagaaaa tgctatccgc tttataaaac
     2161 cttgtgagca atgcggtgct ttaagcgaaa atgagctttg cgaaatttgt agcgatgaag
     2221 aaagaaataa aaacatttta tgtatagttg aaagcccaaa agatatacta acactcgaag
     2281 agagtcaaag ttacaatggg ctatattttg ttttagatga gttaaatgaa gaaaaacttg
     2341 aaaaactaaa gcaaatcata cttaagctaa atatctctga gctcattttt gcattgacac
     2401 atagcattaa ttctgatgca accatctttt ttatagagga taaatttaaa ggcttaaacc
     2461 taacttttag taaaatcgct caaggaattc caagtggtgt aaatttagaa aatgtggatt
     2521 taatctcttt aaataaagct atgaatttta gaacaaaaat ttagtaattt ttataagaaa
     2581 tatcggctaa ttcttgcaaa gaaaaatccg caatcttttc ataagcaaaa ccttccttgc
     2641 ttaaaaaatc aagtaaagtt ttttccatga ttttagctcc ttgtataagc tcatctgaaa
     2701 gcttaaaact catcgcttca atacgctttg gcacacaagc taagatgtgt gttttaggca
     2761 aatctcctgc aagttccatg tattgtaagg tttgaagcat ttctatttca tgggcacttc
     2821 cactccagct aattttatta ggcatagcat cataaggaaa gaaaaataca tctcctatac
     2881 tcgcaccttg cgcttctata cagtctaaaa cgataagtct atcgtatcga gcgatgatat
     2941 agctaagctg caaagccaaa gttccaccat caacaaaatc taaagtaaat tcagaatgag
     3001 tgaatttgta gtttttttca agttgtttgc aaagatgaac gcctaagcct tcatccgcaa
     3061 acatgatatt acctattcca aggactaaga atttcaatgc tgttcttctt ttacaaattt
     3121 atatccgcta ataatagcat ccatagcacc atctttacct tttactgcgt taaaaatcgc
     3181 catgtaaata tgtactggca caaaaatcat aattacccac atcaaaattc tatgataagt
     3241 tcttacatcg gccaaaccgc ccattgcagc ttcaagcggt cttaaaatat gatataaaag
     3301 cccacctaag ccctcatggt aagtatgagt ataaagaata agccctgtaa gaatgatacc
     3361 taatatcaca agataaaaga aaaaataagt tacaaattgc aaaggattat aaaccccttt
     3421 taaatgcgga tgttttccta agaaaatgta aaattttact tgttctatcc ataatttgat
     3481 attaaaaata tcccatacac ttctgcgttc ttttgcgctt accttatcgc agaaaaacaa
     3541 atatacttta aaaataatac aagcgattaa aacaaaaccc accgcttgat gtactaagcg
     3601 gtattttgct tgcataaaat ttacgggttc accgttacta atagggcttt ggaacacata
     3661 ggaaagataa taccctgtgc caataagaat cactatagca atagctctta cccagtgcgt
     3721 taaacgcaaa cctatgctaa attcatattc agcttttctt tgcaattttt cttctttgtt
     3781 ttgcatgaaa gcctccttat aaattgacat tcactttata ttcacttaga ttattgccct
     3841 tagtatccat tacatgcacc gcacaagcaa tacaaggatc ataagagtga atttttctaa
     3901 tgatttcaag tggttgtttt acatcagcga ttttaagtcc tatcaaacat tgctcataac
     3961 ttccacctac gccatttgcg tcttttggac ttgcattcca agtagaaggc accacagctt
     4021 gccaattttc aataacacca tttttaattc tacaccaatg gcttaatgtt ccgcgtggca
     4081 catgccccat atagcgtcct ttgtattctt tagaattatc gatcacataa ggagcacaag
     4141 tactctggtc tacttttaaa ttttcaacta aattattaaa cgcttttaaa gcattatttg
     4201 caacgatttt tgcttcaata caacgagcag ctgttcttcc aagtgtgcta aatacagcat
     4261 ttaaaggaag tcctgtttct tttaagaact catctaccac aggaacaaca ttttgattac
     4321 ctttagcata atttacaacg acatttgcta aaggtcctac ttgcatagga tttccttcat
     4381 agcgtggagc tttaatccag ctatatttac ccttagtatc aaacacttta gaatggacat
     4441 tatttccatg atgatctacg ctttctccat ctacaagtcc tgtataattt ggatttgttt
     4501 tgccatcata aggatgtaaa ggttcattgt ctgcatacca agaatgagtt gcctcttcag
     4561 taatcttatc ttcttctact tcataaacct tgcttaaatc tccatttttg ataataccac
     4621 tttcaaaaag ccattcatct cttccgattt ggaattcttt aaaggtataa agattattta
     4681 cccctatatc atttaaaaca cttgcttcat gtgcataagc ttttcctgcc atcacaagat
     4741 caggataata cgcacgatta acaaagtctt gcacttcttg gaatttaacc atatattcac
     4801 ccattcttgc aggatcgagt aaatccataa cgcaagttac accaccaacg gttaagcttt
     4861 gtggatgtgg atttttagct ccaaaaatcg ccatacattg agcaatgatt ctttgaattc
     4921 ttaaacattc tagatagtga gaaagaacga ttaaattttg ctcaggactt aaacgataag
     4981 ttggatgacc ataatacgca ttagcaaaag gtcctaaatt tcctttatct acaaaagttt
     5041 taagtctttg ttgcacttca agaagtttat ccgcacctgt tgcataagga tttgaagtgt
     5101 atttaaaagc ttcatcgctt gcttttttaa catcagcact taaagcactt accacatcag
     5161 cccaatcaag cccatgaagt tgataaaaat gcacaatatg atcgtgtaaa aataaagccg
     5221 cattcattaa agttcttgtt aaaagcgcat ttaaaggcgg agtaatacct aaagcatttt
     5281 caacagcaac tatacctgct ttataatgtg aaaaagtaca aactccgcaa attctttgcg
     5341 tcataaaacc cgcatctctt ggatcacgcc cttttactat ggtttcaata ccacgccaca
     5401 aagtagagcc cgcataagct tcttttacca cattgttatc atcaacaaca acttcaactc
     5461 ttaaatgccc ttcaattctt gtaataggat ctacgattat tttttgactc atttttattc
     5521 cttatctttt tgcatggaag atataactgc gtgtgctgct atagcaacgc ctgtgagtgt
     5581 aagcacacct ataccgattt tatctgaaac actatccgca cccaaaccaa aaacggtatc
     5641 aaatttacga ctagccatag gctcttcaaa aggtcccata gtatcccaaa aattaggctc
     5701 agaacaacct atacaaccat gccctgcttg aataggccaa gaagtgtgct ggttaaatct
     5761 ctctcttgag cagttattaa aagtataagg tcctttacaa cctactttat aaagacaaaa
     5821 accttgtttt gctccttcat ccccaaaagc atgtacaaat tcacccgcat caaaatgtcc
     5881 gcgtctttca caaagatcat gaattcttaa accataagcc cattttggtc tattatacac
     5941 atcaagtgct ggtaactcac caaataataa ataatgaagt acattaccca ctatattttt
     6001 ttcacttgga ggacagcctg gaacattgat cacagttttg cttgttactt tgcttaaagg
     6061 ctgcgcgttg ctaggatttg gtcttgcagc ttgaattcct ccaaagctag aacaggttcc
     6121 tatagcaaaa atcgccaaag cattttcact tgccattttt gaaagctcat agcctgtttt
     6181 tccatgtgca cctatggtta aaaaatgctc tgtatcaccc atagggatac caccttcaac
     6241 cattaaaatg tatttatttt tatgcttttg aatggcactt tctaaatttt cttcagcttg
     6301 ccaacctgct gcagccatca ctgtttcgtg atattctaaa gaaatataat caaaaatcaa
     6361 actatcaatc gttggagtat cacttcttaa caaactctcg ctacagcctg tacactcagc
     6421 catatgaagc cacacaacag gaagcctatc agcaagctca gcagcttttg ccaccatagg
     6481 agtaaaactc gctggcaaag ccaaaaatgc agtcatagca cctgcccatt tcataaaatc
     6541 ccttctagaa aaacctgact tttctaatgc ttttgtaata ctatcattgt ctttcaaaga
     6601 aggaagcttt tcaagagccg ataaacgcga ctctatttga tgataatcaa tcattatatt
     6661 tcctttataa catgaaattt attctctata aataataaaa taaagaaagt taaaataaag
     6721 ttaaaaactt actctcataa gtaaatatta gcatcattct taattaaagc ttaatcataa
     6781 gcctttttta agtttgcgaa tcaaaaatct tgcaggatga atagcgtgga tgtatttttt
     6841 ttctaaacac aagggttcat tatttatcaa tgcacacaaa taccttgccg ctaaaacact
     6901 tgtactaaaa ccccttgacc catgagcaaa attaaaatac aaattacaag acattttagc
     6961 tggtttttgc tccttatttt ttgtccataa taaagcttta tattcttctt tataaaacgc
     7021 ttcatcataa gcatttccaa ctatcataaa gcgatcactc gaataagatc taaaacctac
     7081 tttagaacct atgatttcta attttgtatt tttatccata aaatcggcta tattttctat
     7141 attttgttta tcatcttctt cttttgattc taaacttgca ttaagcctat cataacttgc
     7201 accaattact tgcaaatcat cttttacagg gcaaatataa gccttagaag ataaaggaaa
     7261 tggggtatct aaaaaaggtt ttagatgtgt aacttgacct cttactttgc ttaatttcat
     7321 ctcatcataa aaaacaaagt cttttgcatc tgcacccata gcataaatca aaaccgcata
     7381 atcactttta acaacatcat ttttaaattt taaactaaaa cacccatttt caaatttata
     7441 agcttgaaat tcatgattaa aatatataca agctttgctt ttttcaaaaa gatttttaac
     7501 caattttttt ggaaaaatca ctccaccctc ttctaaaaaa gcttgatttt ttgaaatttt
     7561 aaacaaaaca ttttctcttt gcgtgtcaaa tctttcttgc attaaatcat tatgtgcaaa
     7621 ctccaccaca cccttaaatt ctaaatctaa aatttgtcta taaaaacgac ttgcctctat
     7681 aaaagaaagc tctgaaaact cccctaaatt taccttaggc tttaagatta aagagcttaa
     7741 aattccactt tcatttccac ttgcaccctt gcctaattct aaatgttttt caaaaatatc
     7801 tatttcaaaa cctcttaaac taagctcata agctaaaaca gcacttgata tacctgcacc
     7861 aataatagct acttttttat tttttaaaga tgaaaatgtt cttgaaaaat acgcttcttt
     7921 gtctttaaac tcaagctcat tttccaaata agctttaatc atttctcttt ttctaaaacc
     7981 tttggttttt tctactctaa agccatattt ttttaaattt ttttgcaaaa aacttgccga
     8041 agaaaaggtg caaatttgtg tatttttttt agaaagcctt gccacttcaa agattaaatt
     8101 ttcatcaaac atttgcgagt ttttatttgg agaaaatcca tctaaatacc aaacatcagc
     8161 tttaaaatcc aattctttta aaacagctat atcttcaaaa acaagatcta aaaaacaatc
     8221 ttcaaaataa aaacgataaa ttccttcttt agccttagga taaaatttta aaaattgttc
     8281 taaaagctct ttaaactctt cataaaattc tagtttttga taaatttctc ttaattgttc
     8341 tttttcgata taaaaagctt ctacgctaat ataaaaaagt tttttaggac gcttagaagg
     8401 ggtagtttct aaaaagcgtt tcaaagtaag aaaaaaattt aaacctatgc caaaaccact
     8461 ctctgcgata ataaaatttt cttgattttt ccattcaaaa gaatgagtgt aaacaaattt
     8521 gctttcattt aagccatctt tgaaattaaa ataaaaatca tcaaaatcca aagaaaaagg
     8581 agtattatcc ttaaaaatta gcttagcttt tttcatcggt tgttataaaa ataactctca
     8641 actccatcgg caataccctt aaccaataaa tcttgaaaag ctttattggc gattcttttg
     8701 ccttcatttg gatgtgtaat atagccaatt tcaatcaaaa ttgcaggcat ttgcgcacct
     8761 actaaaaccc aaaaaggtgc ttctcttaca ccgccatcta caattttata ctttttgcgt
     8821 gtttgagtga gtatattttt ttgtacatca atggctagtt tatttgaagc aacgattttt
     8881 tcacgattta agaaatttaa aatactttgc tttgagaaat aattaatctc ttcaaaatcc
     8941 ccttgatttt ctttttctgc tgccttttta cttctttcac ttcttgcagg acttaaaaag
     9001 aaagtttcca cgccttcgct acttttggct tttgtggcat ttggtgctgc gttagcatgt
     9061 atagaaataa acaaatccgc tcttttatca ttggcatatt tggttctatc acgaagattg
     9121 ataaatttat ccgaacttct agtataaagc actttataac cgcgtttttt aagttcattt
     9181 ccaagtttta aagccgtact taaaactata tctttttctt ttaaacttcc ttttttatca
     9241 cttaaagcac cgctatcttt tccaccatgc cccgcatcga taaccacaag ctttcctgat
     9301 ttgtaatttg tatttaaagt tttactagaa ctttgagttg cttttttgtt tacattttga
     9361 tttgtagttt gtatataaaa acctaaaatg agattattat tatccaactc ctttaaaagt
     9421 ttaaattctt taggagcgct caaaaccaca cgaacggttt ttggattgta ttgagtaact
     9481 gtaatcacat tttgtccaaa agtaaagctt tttctattac cttctaacac acccttaaaa
     9541 cttacaacat atcggaattt ttgatctttg gtatcaaata ctgctatttc tttttcatct
     9601 aaatcatcgc ttaaatttaa caccacagca ttagaaattt tatccacatc taaaacatat
     9661 aaaggttctt gattttcttt ttcattattg gtttttttat cttgtttttt tgtttctaaa
     9721 actttggttt taatttctgt tttttgatct tgctttttct ctgaaatttt actaacttgc
     9781 tcagtctttt tttggctagt agtttctttt gaaaaaatta ttttttcttc tttaaaagat
     9841 atatcaatag gaattttttc tttagcataa accactatgc gtatggtttt gggattaaat
     9901 tgtgaaatca ctaaacgata gtcatcaaat ttaaactctt ttttaccccc ttctaaaacc
     9961 ccatcaaaat cactaataaa acgatagttt cctttttcgt ctaaagcaaa actttttaat
    10021 tgatccttat ccaaatctgc atttagttca aactctacac cttggtttgt tttacttgac
    10081 tttaaaacat aaattttatc atcgcttttt gctttagaaa cgatactgct ctttggtgct
    10141 tgcgaagttt tagaatttgt tttttctgta ttttttattt gttcgttaga tgattttttt
    10201 tcattttttt gaactgtttt tataggttca aaagttgatt tttcagtgtc ttgagaaata
    10261 ttttgaacct taatatcttt aataacagcc tttcttaaag cattaatact tgtttcactt
    10321 ataccacttt cttttaactc attagcatat gacttgtcat ctaaatttaa agtatttgaa
    10381 ctgataatca atctttttaa aatttcaatt ttagtttttt catcttcatt aataacactt
    10441 tgtatataaa ggcttttgag ctgatggtga aattttactt gcacttcact tttagaaccg
    10501 ataaaatttt tatcaaaatt tgcaagttca ttttcataaa ctccaaaaag agttgtgaaa
    10561 acaaatacta aaaatacaaa aattttagcc attattcacc attaaccaat ttttccataa
    10621 gttctttaac actgataagc ttatctaaac gatatccatt tgcacctgta aagaaaagtc
    10681 ctgtttcttt tttgcctgac cacgcatcaa aaagcctatc tgctatacaa taccctactt
    10741 tagtcgcctc ttttccacgt ccacaaggcg ctacacaatt gcttatacaa ttaatctttg
    10801 gacccattct tttatctacc aaatttaaaa gattggttct aactccacga gcaggatagc
    10861 ccacaggaga tttaataagc tctatatctt cttctttaga agctagcaaa acgcttttaa
    10921 actcttcact cgcatcacat tcaaaagttc ctatgaaacg cgttcccatt tgaacaccac
    10981 tagcccctaa agaaatagca ttttctatat cttttttatc ccaaattcca cctgcagcaa
    11041 tcacgggaaa agacccccaa tttttagcct cttctaccac aggagcgatt aatttttcta
    11101 gctgataatt cggatctaag cactgctcat aagtaaaacc ttgatgacct ccactttttg
    11161 gcccttctaa aaccactgca tcaggtaagc gattgtaacg gctttgccat cttttgcaaa
    11221 taatttttaa agcctttgca gatgaaatga taggcactaa agccacatca ggaaaatctg
    11281 cagtaaattc aggtaaattt gtaggaagtc cagcgcctga aacaatcaca ttaaaaccaa
    11341 cctcacaagc atcgcgtgct attcttgcat aatcattact tgcacataag atattacacc
    11401 ccaaaggtgc atcgccacaa acttttcttg cattattaat caaagcttgc aaacccttgc
    11461 gtgagtaaaa attttcactt ccataaggct tagcgtttaa ttctttactt gcatactttc
    11521 tttcttcata atatcctgtt cccacagaag aaataatccc aagtccacca tttaaagaaa
    11581 ctgcagaagc taatctatcc cagcttatgc ctagtcccat tcctccttga aaaatgggat
    11641 attttatagt atgttttcct atttgtaagg gttgtaaatt cattctttta cctttaattt
    11701 tgcaaatttt cttttaccta tttgtaagat gtattctcct tgttctaaat acatttgctc
    11761 gtcgctaact ttttgagaat ttacacttac tgcattagca ctgatgcttc ttcttgccgc
    11821 agaagtagaa ctttccaaac cacattcaac caaagcctta gcaagccaaa tttttccttg
    11881 tatttcaaac tcagccatat cacttggcaa agcattttga gaatgaattc tatcaaattc
    11941 agacttagca ttattagcct cttctttgga gtgaaaacgc tctgtaatct ctaaagctaa
    12001 attttcttta gcttttttag gatgtaaatt gccttgttct atatcttttt ttatttgcgc
    12061 aatttcttct agactttttt gacttaaaag ttcataatat ctaaacatca attcatcact
    12121 aatacttaaa attttagcat acatatcatt agctttttct gtaacaccaa tgtaattatt
    12181 taaactctta ctcattttgt ttacaccgtc taaaccttcg agtaaaggca tcataatcac
    12241 agcttgttct tttcctatgt tataaactct ttgaagctgt cttcccatca aaagattaaa
    12301 tttttgatcc gttccaccca tttcaatatc gctttttaaa gccacactat catatccttg
    12361 aagtaaagga tacaaaaact cgcaaatcga aataggactt tgctctttaa atctcttggt
    12421 aaaatcgtca cgctcaagca ttctagctac actaaaagtt gaagtaagct ctactatacc
    12481 cgcggctcca agttcattaa gccaagtaga attaaactta atctgtgttt tttctttatc
    12541 caaaacctta aaaacctgcg ttttataagt tttagcattg attaaaactt gctctttatc
    12601 cagcttttta cgcgttgcac tttttccact tggatcgcca atttgtcctg taaaatctcc
    12661 aatcaaaaac tgcacaatag ctccatgttt ttgcaaaaaa gccatttttg ttaaaaccac
    12721 gctatggcct aaatgtaaat caggcgctgt aggatcaaac cctgccttta taaagaaatt
    12781 ttcacccttt tcataataat ttttaattaa attttctatt ctttcttcat caataagctc
    12841 tgcacaacca cgcttaactt ctgctaatat tttttttata tccataataa acctttttaa
    12901 ctttctttat aagcatcatt taaagatgta aaatctaaaa ttttacaacg agattttaac
    12961 ctatccttga cactatctgg attgatatta tcaggaattt ccattgtaat ctcaaaataa
    13021 tctaccgccg aatttaaatc acttgataaa ttaattgtta ataaatttat ctgcatttta
    13081 gctaaaaatg ccaaaaattc cgctaaaaca ccttttttat tttccaaaga aaaaatcaat
    13141 ttataagatt tagggatgtt agaatcccat tttataaata ccatatcttg attattatct
    13201 atcattttat cagctctatc gcaaagctta tgatggacaa tagcgttacc acctttaaca
    13261 aaagctaaaa cagcatcacc tctttttgga tggcagcaaa aatcaaaatc cacattagcg
    13321 attttatggt tacaatatag agtaaaattt cctatttttt gctctttaat ctcatattta
    13381 tcaaaccaat atgacttctt ggcgtatttt ttaagaccat taactatatc tttcaaataa
    13441 gcactatctg ttgctacttg tctaatacgt ctgactaaat tttctttttc tatccaagtt
    13501 tcaattctgt ttttatcaac tccaaaaata aaacttaaca tattaataga acttgctaga
    13561 ttaatctctc tgattttttg cttgcaaaat tcccttatac ttgcttttgc ttttcctgtt
    13621 ttaacactat ctatccaaga acagcgataa aatttatcat tgctagtaac cactcgcaca
    13681 atatcgccat ttttaagctc ggttaacaaa ggtactttaa tacgatttac ataagcactt
    13741 tttgcatgaa gccctacttt ggtatgcact tcataagcaa aatcaagaac cgttgcacca
    13801 cgaggcaaag tgaaaatttc tcccttagga gaataaactg cgacatcttc aacataaaga
    13861 ctatctttag catattcata aagctcaata gcattataat cttctgcatt ttcaagattg
    13921 tttatacttt gcattgaaat atctgtaagc caatcaagac gaggcgcaac cacgctgcca
    13981 tcttctttat atttccaatg cgctgctata ccaaattccg caattttatg catatcaaaa
    14041 gttcgaattt gtgcctctat aatactttta gcatcaaaaa gtgtggtatg tatagtttga
    14101 taaccatttt gtttaggcaa ggctatataa tccttaaaac gcgaaaccaa gggattaaaa
    14161 tgtgtatgta aaattcccaa agctaagtaa caatcactta ctttttcaac caaaattctt
    14221 accccaagca aatcaagaac ttcttcaata ccaatgcctt ttctttgcat tttaagataa
    14281 atagaatagc tatgtttaat gcgtttttga atttcaaaac taccttgtct aaagccatta
    14341 ctcaaaaata aaagttcgat tttggaaata aattcattta aacctaattg catttcttga
    14401 ttattggaat tgatataatt gtcaataagc ttatactcat ctggcataag atatttaaaa
    14461 ctaagatctt ccaaataatt ttttatgctt gaaataccaa gtctatgggc tattggggca
    14521 tatacaacta aagtttcttc gctgattctt ttttgcttat cttctcttag aatatcaaga
    14581 gtaagcatat tatgcagcct atcgcataac ttcacaatca aaaccccaac atcttcaata
    14641 cttgctaaaa gcatatttct gaaagtcaag gctgatttag ttaaactttt tttagatttt
    14701 gatgaaatga gattatcttc tctaatttct ataattttag taagtcctaa aacaagtttt
    14761 aaaacctcag aaccaaactg ctctctaagt tcttcttcag tgcagtttgt atcttcaatc
    14821 acatcatgca ataaagcagc taaaatattg cttttatttt cacttaaaaa tccaaccagt
    14881 gttgctacta aaataggatg taccgcataa ggctctccac tttttctaaa ctgcccttca
    14941 tggcaaaata tacagtaatc taccgctttt tcaagaatgg catcatggcc acaaatttcg
    15001 aaaagcaaag ccttagcagc ttctaaatct ttacaatttt ttacattatc gattaattgt
    15061 tcaagcaata attcttcatc gattggtttc aactaaaccc tctaaagtga ttttattttc
    15121 tgcaatttca tataaagcta tatctgcaag tttattttta tttttatcaa agtctaccaa
    15181 aggggttgct ccatttgcca attgttccgc tctttttgct accactaaag aaaggcgata
    15241 tctatcatta cccatttttt ccaaagcttt tgccgctact tcttctattc ttttatccat
    15301 aattttctcc ttaattattt ttaacggttg aacaaaggct agtatcacct tgtatgattt
    15361 taagtaaatt accctcttca aacatattac aaaccacaat aggaagtttg ttatctttag
    15421 ctaaagctat agctgtatca tccatcactt taatattatc ttgcatagcc tcatcataac
    15481 tcaaagtatt taaaaatact gcatcatcaa attgttttgg atctttatca taaactccat
    15541 taacttttgt agcttttatt accatatctg catcaatttc cacagctctt aaaatagctg
    15601 ttgtatccgt agtaaaataa gggtttccag tacctgcagc aaaaaccaca acacgaccct
    15661 tttctaagtg tctttgcgct cttctcataa tataagtttc acaaaatgct tccatctgaa
    15721 tggcgctttg aaccctaact tcaagtccag agctttccaa agcttcttgt atagcaatag
    15781 cattgataac cgtagcaagc atccccatat gatctccact tgtcctttta atcaatccgc
    15841 ccttagcagc acttactccg cgaataatat taccaccgcc tataactatg cctacttcta
    15901 tttgattttt tataagttct ttaatctctg aagctatgaa ttttaaaata gaattttcta
    15961 taccaaagcc attttcacct gctaaagcct ctcctgaaaa ttttactaaa actctttttc
    16021 tctcttgcat tatttctcct tatttaactt gaaattatat tttaaattcc attaaattta
    16081 gctaatttaa gctaatgagt tccaaaggat tgatatgaaa atttttttga gttacttcaa
    16141 aagtaagatc attttttatt ctacccacta cggcaccttt tttaatattc ttaccaactt
    16201 taatattagg agcaatctta tctaaatgtg cgtatattgt atgtatgcca ttatcatgtt
    16261 caacaataac aactcgagct agcatactag tatctttagc aaaaactatt tttccatcta
    16321 gcacattttt aacaactgca tcgcttttat tgcttcttaa aactacattc tcgttaaaaa
    16381 ttttaagatt gtaaacagga tcaacataat ttccaaattt ttgcttcaca gtaaaagaat
    16441 ccaatggagc tatggttttt tttcctgtgt aacgcttgac tgaacttcct tgatagcttg
    16501 aacctaattg tcttattttt tgattatttt ttactatttt agtatcattt ttgtttgaat
    16561 ttgcatcttc tttatcatta ataattttta attgatttaa tgtttttcta agctcttctt
    16621 gctgagcttg taaatcatcg agtttttttg catatatagc tcgatctgtt ttttgtttat
    16681 taatttcgct aatttgtttt tgttttaaac tttgaagctt ggctaattga gcgttgtaat
    16741 ccttaagact ttcattgatt ttcttaatct gagcttgttt atcatcaata agcctgctta
    16801 ctccctcata atctttagaa attttaaaaa tttcttcatt taaaactttg tttaaacttc
    16861 ctaaaatttc aaaagccata aaactttctt cactttcaat atagccttga gggataggta
    16921 aatcataagc aaaatcttta gccattaaag atataagctt accttccata tttgatttac
    16981 ttttaagcaa atcttcattt tggcttgtaa gggtgtttaa ctcttgattt tgagccttag
    17041 cacttgcttc aagcttagaa gtttgtgaat ttaagctttc aatttgcaaa cttagatctt
    17101 tcaaactttt ttcaccattt aaaatatcgc tagccaaatc ttcaagtttt ttatttaact
    17161 gttcttgtat gcgtttattt tcttctaaac tttttgtttt ttcatttata gcgtttgcta
    17221 aacttatatc aacaaacaaa aaaaaacaaa aaaagataag aatatttttt ctcatctttt
    17281 aaccttaaac ataaccgtat ttacacacaa caagcaaata aacaaagtag ctaaaaaaat
    17341 taaagtcaaa tgtaaaataa aattaatagg tggaaaaata atatctacag cctttaaact
    17401 ttcttggata atagaaagat caaaaatttg ggtaaaaaag gcaagtaaaa taacaaaagc
    17461 aataaaacaa tcaaccacaa ccaccttata aagcataaaa gatctaaacc aaaacggagc
    17521 tccaaataaa cacataattt caatacgatc ggtatgttca taaagccaaa ttctcatctg
    17581 ttttaaaaac aaaacaaagg caagtaaaat aatgataaac aaaaataacc aaaaaacaaa
    17641 tttcatcaaa ataagcaaag agtatatctt atcatgggtt ttggaaaaag tttcaacctt
    17701 actaacacct acaatattta aaagttgatt tttaatcgaa tttagttcat tttgatcggg
    17761 taaagaattt aattttaaag tataaaattt tggcagagaa tcttttaaaa ctttcaaatt
    17821 cttttcagaa acatcatttt tcaaacgatc aattaaatcc ttaggatcta aagattcaag
    17881 tccagcaaaa aatggtactt ttgtttttac tacattctga tcaagttcag ttttgctgac
    17941 aactataata ttataatctt tattaacaag ttcttcataa tgcttcaaag ttgcatttgt
    18001 aatcaaaata aattcaaaag caaacatcat aaaaagtaaa ggtaaaatta aagataaatg
    18061 tgttttaaaa aatttcattc atttttccat tttctatatt aaaacgacga taatccactc
    18121 ttaaattact aggaattcta tgtgttacca ctataacaca agttcctaaa agctctctag
    18181 cagactttaa aagagtccat ataatatcag aagaatactc gtccaaattt cccgttggct
    18241 catcgcaaag caaaagcttt ggattatgag ctaaagccct agccatagcg acgcgttgtt
    18301 gctcaccacc gctaagttga ttaggcaatt tatctgcttt aaaagttaaa tttacatgct
    18361 ttaaaagctt agtagcttga tcatggcata cttttttgct ataaccttta atcattaaag
    18421 gcaacataac atttttttca acactatatt cttgtacaag tttataatct tgaaaaataa
    18481 tccctattct ttgacgtaat tttaaaagtt ctaaatttcc aattttattc atcaaagatc
    18541 cacatacttc aagtttacca gaaataggtt ctaaatctcc ataaaaagac tttaaaagcg
    18601 tactcttacc actcccactt ttacccgtaa taaaaacaaa atcatcatcc ttaaaagcaa
    18661 aactcgcttc tttaataact agttcatcat aacctaaagt aagtttattt gcttggatta
    18721 aattaggcat cctttttcct taatttccct ttttaaattt ttaaattatg ctttattttt
    18781 gcttaatttt caagaaaaat tatattttaa actgaacttt taaaatttct tttaattcat
    18841 ttatcgcttt aatattttct tgaattttaa atggctcttt aaaagcaaaa tcaatcgttt
    18901 tatcaagatg caaataacaa tgttcaggct tattaaaagc tccaaaagca acctttaaaa
    18961 gcaaattctc atcttgttta tagatgcttt caaaatgcaa gaaaaaatca tcttttttta
    19021 tagtaatatt tttaaagttc tgctctattt ttttcaaatc ctctttagaa aattcaaccg
    19081 atgagagatt aaattcattt aactcatagt ttttacactc ttggttaaaa ttccacaccc
    19141 aaagatcata tatatttttt tcttgctttt tccatctatc ttcatatttg cttgaaattt
    19201 ctaaattttc attttttcta aggctaaatt ttggagcagg aaaagtcaaa aattgctcta
    19261 aagtaaaatt aaaatactca aaactatctg ttctaagctc aaaacgacca ttttgaacta
    19321 aaaccctagc acattctttg caaaaatctt tcccaataac tcgcctatga ggctttttgt
    19381 cccaaggaac agggaaatgt aaaaaaatct tttcaactga ttttgatttt aatacactca
    19441 ataacaatct cgcatcactt tggattagca aaatattatt tacattttgt gctttagcaa
    19501 gtttagccac ttgagttaaa gctgggttgt aaatttccac ccctaaaatt aaaacatttg
    19561 gattttcttt tgcttgataa agcaaatgtc ttcctgatcc aaagcctatt tctatataaa
    19621 ttttaccttg aagtctagat aaaagctcat caaaattatc aacgataaat ggtgtttttt
    19681 caattaaagc attattttta agtccaaaag cttcattgat aatatcctca caaaaacctt
    19741 ctttaaagat ttttaaagcc ttttgcaaat aacctatttt agaaggtttt gtatgtttat
    19801 cgcctttaat cacaaaacca ttttgtgctt ttttaatctg cagaaaaaaa ctctcttctt
    19861 gaacctttgt ataaataaga ctaacattat cattcttagc aagccaaaga aattcaacat
    19921 catccttact ataaggcaga tttatttctt tgatcttttt acttttaaaa tttggcacta
    19981 ctgagccgcc ttaactttgc ttgaaggttc tgaacgaagc tcggctgaat caatagcaat
    20041 aacttcataa ctatattcca cccctggcaa agcttttaca tcttttaatc gcttttcttt
    20101 aatgccttta aaaactgcat tttgctcccc gccatagcgt cttacttcat actcaacagc
    20161 tctagtatca ttatcactcc attctaaatt tatcccttcg cttgtacttt gagccaaaat
    20221 aatactagga gccaaagggt tgcctaaagt tttaccttct acaccatctt ttggcatagg
    20281 actttcaaga ccatctttat ccaccattgt tactttataa tacttgcttt tacctgctcc
    20341 ttctactata tcctcataag aatttttatc agtctttgcc aaaacactaa aaggaaggaa
    20401 gcttgagctc gtagaataaa ctttataata agaaaaatct tcatacgtag gagcatccca
    20461 agttaaaatg attttactag aaccatctgt gctagcactt aaatgctcaa cttgaggagg
    20521 taaagccttg cttgtagaac ttacaacttg acttgaccca ctctttatcc cattaaaact
    20581 cacagcaata attctataac ttgaattttc attaggcttt aaatcactat cgatgtattc
    20641 agcgtttaaa cgatttttta cttctgcaat ttttttaaat tctttatcat cacctttggt
    20701 tctttcaata atataagaat caaccctaaa atcaggatgc ggacgccaaa taagtttaat
    20761 acgattaggc aaattagtca cagcttgaac aaaaggaaca gcttcaagtc ttggagctgt
    20821 gctcacttct ataaccttgc catcttctga aatttgtcct tgctcattaa agcttttcat
    20881 catataacga tacttagtac caggctctaa tttagtatct acataatgag tttgaaactt
    20941 atctttaata gtgcctacaa gtttaaaatc aggattttca tcactagaac gatacaaata
    21001 aaatccttta atattttcat tatataaagg ctcccattca aaagcaatat tactcatatc
    21061 actaagactt tttaaacttt caacctttgg caagctttca tttacagcag gctctttact
    21121 tgaagctagc gaattcattt gcgaaacact acaagcgcta agcaaaagag ttaaaaaact
    21181 caagtaaaaa ctcaagcgaa atcttttcat cattctctcc taaattaatt tgttcaaaca
    21241 taatattttt aaaatcttcc atcaaaggtg ctttaacaaa aatttgttct ttggtttttg
    21301 gatggataaa atacaaaaaa taagcatgta acattatcct acaatcatac ttacccttat
    21361 aaccatacaa actatcacct aaaatatagc gatttaaact agccaaatgc gctctaattt
    21421 gatgagttct tcctgtaaaa agcttagcag ccatcaaagt taaattttca gtttttacta
    21481 catttataaa agctgatttt gcgtttttac tgaatttatt ttccttatct atggctattt
    21541 ttttaatagc attagaaggc gaacgcatta aaaatttttc tactataatt ttatcttctt
    21601 ttagtggcaa atcaattaac gcaaggtaaa ttcttcccat gcttttatct gcaagctgtt
    21661 cacttaattt ttgatgggtg aaattatttt tcgctattag tatagctccg cttgtatctt
    21721 tatctaatct atggacaaga ccagctctta tctctcctcc taaatttgat aaagtatatt
    21781 ttttttctat taaccaatcc accaaagtgg catttttaac gctacttgct ccatgaacga
    21841 ctaaatttga aggtttattt aaaacaagca agtcttcatc ttcgtataac acatcaatat
    21901 caaaatccac ttcaaactga ggttttatct cattgcaaag ctttaaactt gcaatagaaa
    21961 taatatcacc atttttaagc ttaaatgaat ttttatcttg aattttatca ttaacctgta
    22021 cacaatcttt ttctataagt aaagcaactt gattgcgact ttggtttaat tttttagcca
    22081 aaaatacatc aagccttgaa ttttcatcta ctaaaaaagt ttgcattttt tccttagagg
    22141 ttttgataaa tttaaaattt tagtttataa ttatagcttt atattaccaa ctgaaggcaa
    22201 attttgttta gattagatag aagaatttta actcattttg actatatgca acccatttta
    22261 tttttaccca taattcttat ttcatttttc ttaatctttg aagctaatcc ttttttagca
    22321 gaaaaacagt ttgtttatgc ctgtgtggga ttgtttgctt ttatggtttt tttcttcttt
    22381 cccataagga aatttatttg gattattcct gttgcttatt ggattaatat ttttttattg
    22441 ctaagcgtag atatttttgg ggttgaaaaa ttaggtgcta aaagatggct tgaaattcct
    22501 tttactcact ttactataca accttctgaa atttttaaac ctagttttat tttaatgctt
    22561 gcctatctta tttatcaaaa tcctcctcca aaaaatggat acaaacttaa acaattcatc
    22621 aaacttagct tttacatcat cttgcctttt ttgctaattg caaaagaacc tgatttagga
    22681 agtgctatgg ttttactact tgttggtttt ggagtgcttt ttatcatggg agttcattat
    22741 aaaatttggt taagtattgt tatagctata agtgttagct ctcctattat ttatacacat
    22801 cttttaaaac cctaccaaaa gcaaagaatt catgatttta tttcagaaaa accaagttat
    22861 caagtagccc aatcaatgat agctattgga aatggtggtt taaccggaaa atctcaagat
    22921 gaagctacgc aaactcattt taaattttta cctatttcaa ctagtgattt tattttcgct
    22981 tacatgatag aaagatttgg atttattggg ggattgacat taattatatt ttatatttta
    23041 cttatttttc atctacttag tttaaattat aaacttaaag atgattattt tgctagagtt
    23101 gctattaatt gtgttgcatt atttattttt atttatgcgg cagtaaatat ttcaatgact
    23161 ataggttttg caccagtagt tgggatccct ttgccttttt ttagttatgg tggaagttct
    23221 tttactattt ttatgatttt ttttggaatt ttacagcatt taatcacttt tagatatttt
    23281 tggacggata taaaggctaa ataaaatatt tttaagcatt aataagatat aattttatct
    23341 tttaattcaa cttaggcgga tttatagctc agttggttag agcaaccggc tcataaccgg
    23401 ttggtcgcag gttcgagtcc tgctaaatcc accattctac atataagcta tagactcttt
    23461 ctttaaaaaa taacttttag ttctttaaat atttcaatct tatataaaaa aagtatgtga
    23521 tgtgattttt tgaaagataa agtggtggtt agaggcagaa tcgaactgcc gacacgcaga
    23581 ttttcagtct gctgctctac cgactgagct atccaaccac aatgtttgat aaagtaaaaa
    23641 tgtaattgta tctttttttc tttaatttaa gtttaaatac aaaaataaaa ttttatttcc
    23701 cttaaagttt taataagata gaatacccgc tttagatcat tatcaaatgg aaattttttg
    23761 aaacaatttg gactagatag acgaactttt aaaattttac tagctggtta tattattatt
    23821 gcattgtttg gggctttatt gctacattca agctgggcac atacaactcc tattgatttt
    23881 ttagatgcct tttttacaag cacatctgct gttagtatga caggattagt agttaagaac
    23941 actgcggttg attttacctt agcaggacaa attattatct tagctttggt gcaaattgga
    24001 ggcttgggat atatgggtat aggtttattt gtttatatac tcatacgcaa aaaagttggt
    24061 tttagtgcaa gaaatttact aaaagagtct ttattttatc catcaatgga tggtttattt
    24121 aaatttttta aaaaggtttt gctgttcatt tttactatag aattgatagg tgctatactt
    24181 ctcaccatgc gttttgccct tgaaatgaat tttaagaaag ctttatggtt tggaattttt
    24241 cattctatta gcgcttttaa taattctgga tttactatat ttgaacatgg atttatagct
    24301 tataaacatg atatagcaat taatcttatt atcacttctt tgattattat tggagggctt
    24361 ggatattttg ttttggttga attatacttt tttcaaagaa aaaaattgca aaatttaagc
    24421 ctacatacaa aaatggttgt tgttgcaagt atttttctta ttttctcttc aacgcttatt
    24481 atttttgctt ttgaatactc aaatcctcaa actataggac atttttcatt ttttgataaa
    24541 attttaagct catattttat cgctattaat taccgcacag caggatttaa taccttagat
    24601 atgggacatt tgcatgatgc aagcttattt tttggatcat tgtttatggt tattggtggt
    24661 gcaccaggtg gaacagctgg gggtatgaaa gtaacaactg taatggtttt attgctctat
    24721 gcttattgga gtatccgcga tggaagagtt agaatttttg gacatgaaat tccaagagaa
    24781 actatatcta aagcttttat tatagctgta ggttcagctg tttatatagt aatagctgtt
    24841 attttgcttt ccttgctaga gtcaaaattt gattttatag ccttgctttt tgaaacttct
    24901 tcggcttttg caaccgtagg aatttcagta ggaaatggtg gaactttatc tttatgcgct
    24961 ttgtttagtg atcctagcaa ggtgattatc atcattatga tgctaagtgg taggataggt
    25021 gtttttgctt ttttactctc ggtattcaaa caagacaaag ctattcattt aaaattccct
    25081 gaaggaaagg ttaatttata aaggtaaaat cgtgaaaaat cttaattatg gaattatagg
    25141 acttggaaaa tttggatcag ttgtagcaga tgaactcatt gctggaggtc atactgttat
    25201 cgttgcggat aaagatgagg aagctttaaa aagtatacaa aatcctccaa gctatgctta
    25261 tattttagat tctacaaata tttcagccct aaaagaagca ggctttcatg atgttgaagt
    25321 tgttattgtt agcataggag aaaatgttga aaaatcaatc cttactctta tggcgcttaa
    25381 agatataggt gttaaaaata tcattgctaa agcaacctct aatatccatg gtcaaattct
    25441 ttctaagtta ggtgcaacaa aggttattta tcctgaaaaa gaaagtgcta aaagactagt
    25501 aaaagaattt ttaactaaag atgctgatta tgaagttttt gatctttcag caaatactat
    25561 acgagctatt aagatcaata tagatgaaaa attagcagga aattctttaa aacatgtagc
    25621 acaaaatatg aaagtgattt cttataaaaa attaaatagt gactgggaaa tactacctga
    25681 tttagaaacc acgacagttt atagtggaga tgttgtaata ctccttggaa cagttaaaga
    25741 acttagagaa tttgaacact aagcaagatt taaagcctta caagccttta caaaacgctt
    25801 taaggctgtt ttttctttgg tagaaatttt atgatatata acttcatcta aataatatct
    25861 aacatctttt atatctaaat cccttgtttt ggcataattt tgcagtatat aataaggaat
    25921 tttaatcttt gtttttggaa attttttcaa aatttgttta tataaagctt ttttttgcac
    25981 acaagaaaat ctagcaaaaa caaaaggcaa tcctgttttt tcgtgccatt ttgcacataa
    26041 atcgatatat ttagaaggat cttttagata aagctttaaa gccttatcac ctataattac
    26101 ttttccatct tgttttaata ctttagccag agcgtttgaa gttgctgaac ttggatcttt
    26161 ggcatttgat gtattttttt ctactaatac acttaaaact cttttattgg cacaaatacc
    26221 caaatctaaa tttttatatt tttttctagc actttctatg cttgaaatga tagctgcatc
    26281 aattcttcta taaaataaat ctttatttag cttacttgga actccttttt tatactccat
    26341 acttgcttta taaccattag gtaggggata tttcttaaga tatatatgta aaggtaaaag
    26401 attaatataa tcaatttttc caaaaatcat ctcttttata gagtgttaaa cactctatct
    26461 cctgcatctc caagccctgg gataatataa cctttttcat ttaaaccttc atcaatacaa
    26521 gccacaaaaa cttctacatc atcatgcatt tggctaaatt ttttcaaacc ttgtggagca
    26581 gcaagtatgg atataaattt tattttttta actccttggc tttttaaaaa attacaagca
    26641 tctatagcag tcccacctgt agcaaacata ggatctataa caatagcagt gcgttttttt
    26701 gcatctttgg gaagtttttg aaaataaaaa tccgccttta aagtttcttc atttctcaca
    26761 aaccccaaaa acccaacact tgcatcagga atcatcttaa aaacactttc aagcattcct
    26821 aatgcagctc ttaaaatagg acaaatcata attttttcat caagtttttt tactgtagtt
    26881 ttttgtatag gtgttgaaat ttcaatttct tttaaagaaa aatctttact cgcttcaaaa
    26941 agcaaaaaag atgaaatttc atcgattaac atacgaaatt gaaagggctt tgtctcttta
    27001 gcccttaaaa ttcctaattt atgttcgatc aatggatgat tgatacaatg aatatttttc
    27061 attttaagct ttcaaaataa gctttctcat caaaattttt caccttagct acaccatctt
    27121 ttaccgcagc tgctgctaca gctgtactta ctgcagcttt tactctttca tcaaaaggtt
    27181 ttggtataac ataatctctt ccaaattcta aagtgcttaa attataagct tttttaaccg
    27241 catcgcttac aggaagtttt gcaagatctg ctaatgcttt agcagccgct actttcatat
    27301 tttcagtgat tttacttgca cgcacatcta aagccccacg gaaaataaaa ggaaaaccta
    27361 aaacattatt gatttgattt ggataatcac ttcttcctgt tcctacaatc gcatcttttc
    27421 taagtctagc cacatcttca ggcatcactt cagggatagg atttgccaaa gcaaaaatca
    27481 caggatcttt tgccatgctt aaaaccattt catcatcaag aatttttggt gcactaagtc
    27541 ctaggaaaac atcagctcct tttaaaactt cttttaaagt cttttcctta gaatcaacag
    27601 caaattcaag tttttgagga gttaaatcat ttctatcttt agaaatcact cctttactat
    27661 ctactaaaat aatattttca acccctaaat ttctatacat cttagcactt gctatacctg
    27721 cggcacctgc gccacttaca accaccttaa tgtctttaaa ttttttacca cttatctcca
    27781 tagcattcat aagccctgca gttgaaataa tagctgttcc gtgctgatca tcatgcatta
    27841 caggaattcc taaatcttgc aaagccgctt caatttcaaa acattttgga gcagctatat
    27901 cttctaaatt tatcccgccc acagtcggag ccaaagcctt gcaaaaattt acaatctctt
    27961 ctatactatg aacattaatt tctatatcat aagcatttac atttgcaaat tttttaaaca
    28021 aacaagcctt accttccata acaggttttg aagcctgtgc tcctatgttt ccaagtccta
    28081 aaacagcaga accatcgcta actatagcta ccaaattagc tttatttgta taagtataag
    28141 caagctcatt atctttagcg atttcaaggc aaggttctgc aactcctggg ctatacgcca
    28201 aagatagatc ataacttgta gccattggct tacttggcac aatatcaatt ttcccaccta
    28261 aatggtattt taaagcttct tcttttaaat tcattttatt ttcctctaac ttttaaaaaa
    28321 ttgtctattc tttttttaca ctcatcaacc cctaaaaatt ctaatacttc aaaaatacta
    28381 ggacttaccg cactccctgt taaagctatg cgtataggct gagccaaatc ttttaacttt
    28441 gcttcttttt tttctaaaaa atcatttgta aaatcttcaa aatctttacc tgttttttga
    28501 tctttaagtg tattggcaaa tgcttggagc aattctaaat tatttttgtt aacaaatttt
    28561 tgcactgcat tttcatcata attttgcggt gcattaacta tgctttttgc accattgata
    28621 atatcatgca aggtttttgc acgctctctt aataaatcaa gtaaaaatcc tgccttttca
    28681 taaacagata aatcaaagcc aagatcttta agctgacggt taatctcttc aaaaggcaaa
    28741 gttttaatat aatgagcatt caaccattca agctttttag cattataaca agatgcgctt
    28801 ttattgatat gataaggatc aaaaagtttt ttcaaatctt ctagtgaaaa aacctcgtca
    28861 tcgccatgac tccaacctaa acgcacaaga aaattaagca aagcttgagg taaaattccc
    28921 atttctttgt attccataac atcagttgcc ccatgtcttt ttgaaagctt tttaccatct
    28981 tctccatgta tcatagccac atgaaaaaat ttaggaattt taaaacccaa tgcttcataa
    29041 agcacaattt gtttaggagt atttgaaaga tgatcatccc cacgaatcac atcgcttacc
    29101 cccattaaag catcgtcaat aacaacagta aaattataag ttggggttcc atcacttctt
    29161 gcaatgataa aatcatccat tatatcttct gctttaaatc tcacctcgcc tttaacccca
    29221 tcttcaaaaa caatctcgcc actttgaggc gctttaatac gcacaacagg ttctataccc
    29281 tgaggtggcg tgcctgtaaa ttctctatat cttccatcat atcttgggcg ctctttggcg
    29341 gcttcttgct tggcacgcaa ttcttctaat tcttctttac tcatataaca ataatacgct
    29401 ttaccttcat ctaaaagctt tttaacatat tctttataaa gatcaaaacg ctctgattgg
    29461 taagttactt ctccatcatg ttctaaacca caccatttaa aagcttcgat aattgcttta
    29521 gtagcttctt tggaatttct ttttaaatcc gtatcttcaa tgcgaagtaa aaaatttcca
    29581 ccattttttc tagcgtataa ataattataa agagctgttc taagtccacc tatgtgcaaa
    29641 taccctgttg ggcttggagc aaaacgcgtt gtaagttttt cgtgcatttt ttgccttttc
    29701 ttaaattttt attgatataa tgcgatattt atacttaaat aaaggtttga aatgaaaaaa
    29761 attttattaa gttttgcatt ttttgcaagt ttggctagtg caaataccat taatgctata
    29821 gctgtagttg tagacaaaga gcctatcaca acttatgata tagatcaaac tatgaaagca
    29881 cttaaaattg atagaaataa agctttaggc gtactcatca atgaaaaaat ggaaatttca
    29941 caaatgaaac aactgggtat tgtagtcaat gatctagagc ttgatgatgc tataaataaa
    30001 atgcttgctc aaaacaaaac cactttaaat gctttcaaag caaatttaaa atccaaaaat
    30061 caaagctatg aacaatttcg tacaaatttt aaaaaagatt tagaaaaaag aaagctttat
    30121 gaaaaaatcg caagtatggc aaaaactgac tttagtgatg atggagcaaa aaaatttttc
    30181 gaacaaaata aagataaatt cactttttat acacaaatta atgcaaatat ttatctatca
    30241 aacaatcctc aaactttaga aaatatcaaa aatacaaaaa aaacaatcct taaaccacaa
    30301 aatgcatctt taaacacaag caatgccgat ccaagacttt taggactttt atcgcaaatt
    30361 cctgttggag gcttttcccc tgttttaaat ggaaaaaatg gctatgaact ctatgaagtt
    30421 aaaagcaaag atgggacaca aactcctgaa tacgaacaag ttaaaaatga agttttaaac
    30481 gcttacgtaa gtgaacaaag acaaaatttc atacaggatt attttgataa actccgctct
    30541 aaaatcaata tagaatattt aagataaaaa ttacaattaa aatttccctt ataataggga
    30601 aattttaatg tcttgcaaga taatttgtat cgtaattatt attaataaaa tcaggatttt
    30661 ccatcatgga aagatgaaaa tctttagtcg tttttatccc acttataagc aactcatcta
    30721 aagctacttt catctttgca atagctttat tacgatcttc tgcccaaact acaagtttgc
    30781 ctatcataga atcataataa gcaggcacgc tatagtcttg ataacaatga ctttccattc
    30841 ttacattgcg tcctgcgggt ggaatgtatt tagtaatctt acctggactt ggcaagaagg
    30901 ttttagaatc ttcagctgtg attctacatt ctatagaatg cccattaagc ttaatacttt
    30961 cttgagatgg taaggcataa ccttctgcta ctttaatcat ttgttctatg atatcaatcc
    31021 cacttaccat ttcacttaca cagtgttcaa cttgcaaacg cgtattcatt tctataaaat
    31081 aaaagtctaa atttttatct actaaaaact caaaagttcc cgcaccttca tatcctatag
    31141 ctttagctgc cttaatagca gtttcatgaa gcctagtgcg tgttttttca tcaagcaaaa
    31201 tcgcagggga ttcttctata agtttttgat ggcgtctttg catagaacaa tctctttcgc
    31261 ccacatgaat cacattgcca aaactatctc ctataacctg cacttctata tggcgtggat
    31321 tttgtatgta tttttccata tacatagttc catcgccaaa tgctgtcata gcctcgcttt
    31381 cagccgacca atacgctttt tcaagatctt tttcattttc aaccacacgc ataccacgac
    31441 caccaccacc tgcagctgct tttaaaatca caggataacc tatttctttg gcaagttttt
    31501 tagctgcttc agctcctgcc aaagccccat cgcttcctgg gatcacaggt acgcctgctc
    31561 tttgcatgac ttgttttgct tttgatttat cactcattaa attcatagct tccacagaag
    31621 gacctataaa tttgatgtta tgtttagcac aaatttcaac aaaattttga ttttcactta
    31681 aaaatccgta tcctggaaaa atcgcatcag cttctgctat ttcagccgct gcgatgatag
    31741 ctgggatatt taaataactt tcagaacttc ttgccttacc tatacaaatg cttgcatcag
    31801 cgtattttaa atacaaagca tctttatctg cttcagaata cacacaaatt gcttttttac
    31861 ccatttcttt aatcgttctt aaagcacgca gtgctatttc tccacgatta gcaattaata
    31921 tgcttttaat ttccatttta taatttctcc accgcaaata aaggcattcc aaattctaca
    31981 ggctgaccat cagcaactaa aatttcagcg atcctacaat caaattccgc ttcaatttca
    32041 ttcatgattt tcatcgcttc gataatagct atagtatcgc cttttttaac cgtactacct
    32101 acttttacaa aaggtgctgc acctggactt ggagcttgat agaaagttcc taccataggg
    32161 ctgtttatac ttggtttgtt tgattttaca ctttgactag gttgagcttc gtttacaacg
    32221 cttacattga taggttgtgg agctggaact ggaggacaaa caggagctgg aacatcgcag
    32281 cacatatctc tttcaagttc tatttcaaaa ccatcttgtt ctttgatctt aattttacta
    32341 atatttgctt cagcaaaaag gttgactaac tctttaattt cttcttttgt cataaaattc
    32401 tcctacaaaa tttaagaact taaccttgta ttatataaaa aaacttgaaa tttaacttta
    32461 aaaaagaaaa aaatcataaa aaatatagat tttttaggtt ataatcctta caaaaattac
    32521 taatattaaa aaggttaaaa atgggcttaa aagcggataa ttggataaga aaaatggcat
    32581 tagaacacaa gatgatcgaa ccattttgcg aagcaaatat aggaaaaggt gtggtaagct
    32641 atggactttc aagctatggt tatgatatac gtgtagggcg tgagtttaaa atttttacca
    32701 atgttaattc aactgtagtg gatccaaaaa atttcgtaga agaaaatgta gtagattttg
    32761 aaggcgatgt atgtatagtt cctgcaaatt cttttgccct agctagaact atagagtatt
    32821 ttaaaatgcc tgataatgtc ttagctattt gtcttggcaa aagcacttat gcaagatgtg
    32881 gcatcatcgt caatgttacc ccttttgaac caggttttga aggacatatc actatagaaa
    32941 tttcaaatac tacgccttta cctgcaaaaa tttatgccaa tgaaggtata gcgcaagtgt
    33001 tgtttttgca aggcgatgaa aaatgtgaca ccacttataa agataaaaaa ggcaagtatc
    33061 aagcccaaac tggcataacc ttgccaagaa ttttaaaata ggaacactta ttgctttaat
    33121 tttaaaaaaa cttaagcaaa ggaaggcaaa atgtttaatg gaaaaaatat cttaatcacg
    33181 ggcggaacag gctcgtttgg aaaaacttat actaaggttt tgctagaaaa ctataaacct
    33241 aataagatta tcatttattc tcgtgatgag ctcaaacaat ttgaaatggc aagcgttttt
    33301 aatgctcctt gtatgcgtta tttcatagga gatgtaagag ataaagagcg tttaagtgct
    33361 gctatgcgtg atgtggattt tgttatacat gctgctgcaa tgaagcatgt gcctattgct
    33421 gaatataacc ctatggaatg tataaaaaca aacatacacg gtgcgcaaaa tgtcatcgac
    33481 gcttgttttg aaaatggggt taaaaaatgt atcgctctta gtacggataa ggcttgcaat
    33541 cctataaatt tatacggtgc aaccaaactt gcaagcgata agctttttgt cgctgcaaac
    33601 aacatagcag gtaacaagca aacacgcttt ggtgttacaa gatatggcaa tgttgtaggt
    33661 tcaagaggtt cagtggtgcc tttctttaaa aaactcatca gcgaaggagc taaagaactt
    33721 cctatcaccg atacgagaat gactcgtttt tggatcagcc ttgaagatgg agtaaaattt
    33781 gtactgagta attttgaaag aatgcatgga ggagaaatct ttatccctaa aattccttcg
    33841 atgaaaatca ccgatctagc ccatgctcta gctcctaatt taagccataa aatcataggc
    33901 ataagagcag gagaaaaact acatgaaatc atgatttcaa gcgatgatag ccatttaacc
    33961 tatgaatttg aaaactacta tgctataagc ccgagtatta aatttgtaga taaagataat
    34021 gactttagta tcaatgccct aggcgaaaaa gggcaaaagg taaaagatgg tttttcttat
    34081 agttcggata ataatccttt atgggcaagc gaaaaagaac ttttagaaat catcaatcac
    34141 accgaaggtt tttaaaatgc ttacttattc tcatcaaaac atcgatcaaa gcgatataga
    34201 tgcgcttaca aaagctttaa aagatgaaat tttaacaggg ggtaaaaagg tagatgaatt
    34261 tgaagaagcc ctttgcgaat atgtgggcgt aaaacacgct tgtgtattaa actcagctac
    34321 ttcagctctt catcttgcct acacagcact aggtgtccaa gaaaaaatcg ttttaaccac
    34381 tcctttaacc ttcgctgcta cggctaatgc agccttaata gctggagcta aggtagagtt
    34441 tatcgacatt aaaaacgatg gcaatattga tgaaaaaaaa ctagaagcaa gacttttaaa
    34501 agatagtaaa aatataggag ctattagcgt ggtggatttt gggggaaata gcgttgaaat
    34561 agatgaaatt tcaagccttg ctaaaaaata caatatccct ttaatcgatg atgcaagcca
    34621 tgctttaggt gccttatata aaagtgaaaa agtaggaaaa aaagccgatc tttctatatt
    34681 ttcttttcac cctgttaagc ccatcactac ttttgaaggt ggggctgtgg tgagtgataa
    34741 tgaagagctt atcgataaaa tcaagctttt aagaagccat ggtattgtta aaaaaaggct
    34801 ttgggatagc gatatggtag aacttggcta taattaccgc ttaagcgatg ttgcttgtgc
    34861 tttagggata aaccagctta aaaaactcga tcacaatctt gaaaaaagag aagaaattgc
    34921 aagtttttac gataaagaat ttgaaaaaaa tccttatttt tccacgataa aaatcaaaaa
    34981 ttataaaaaa agttcaagac atttatatcc tatcttgctt tttcctgaat tttattgtca
    35041 aaaagaagaa ctttttgaaa gcttacttca tgcaggaatt ggcgtacagg tgcattacaa
    35101 acctacttat gagtttagtt tttataaaaa attcttagga gaaatcagac tccaaaatgc
    35161 ggataatttt tacaaagccg agcttagcat accttgtcat caagaaatga atctaaaaga
    35221 tgcaaaattt gtaaaagata ctttatttag cattcttgaa aaagttaaaa agggatattg
    35281 tggataagct agactttaga agccaagatt ttagccaaac tggaaaggct atgtatgaac
    35341 tagcttgtga actttttccc atccctagaa gtatcacagg acaaggtttt agagatagct
    35401 tagaaatttt aaataaaact ctgggggggg gatactcaaa tttcactcta taaaaagtgg
    35461 cacaaaggtt tttgactgga tagttcctga tgaatggaat gttaaagaag cctatatcat
    35521 cactccagag ggagaaaaaa tttgtgattt taaaaagcat aacttacacc ttctaaacta
    35581 tagcgaagcc atcgatcaag aaatcgaact agaagaactt caagatcatc tttactccat
    35641 agaagaaatg cccgatgcta ttccttatgt aacgagttat tacaaaaggc gttggggatt
    35701 ttgcctcacg cataatgaaa gaaaaaaact taaaaaaggc aagtacaaag tctatatcaa
    35761 tgcgaaacat gatgaaaatg gggttttgga ttatgctgat tttatcctac ctagtacgca
    35821 aaactcaaaa gatgaaattt taatttcaac ctatctttgt catccttcca tggcaaataa
    35881 tgagcttagt ggtcctgtgg tggctatttt cctagcaaaa tggcttttga gtttaaaaga
    35941 aagaaagtat aattaccgct ttgtcatcat tcctgaaacc ataggctcta tagtctatct
    36001 tagcaaacat ttagagcatt taaaaaaaca tgttaaagca ggctttgtgc tttcttgctt
    36061 aggcgatgat catgcttact cactcataca cacacccaaa aaaaacactc taagtgataa
    36121 agttgccttg catacgctta aaaataaaaa aaatttcaaa gcttttagtt ttttagatcg
    36181 tggaagcgat gaaagacaat acaatgctcc gcttgtaaat cttggcattg taggagtatg
    36241 tcgcacaaga tacctagaat acgaacaata ccacaccagc aaagatgatc tcaattttat
    36301 ctctgaaaaa ggtttaatgg gtggacttca aagcatacaa gaaatgattt taaatctaga
    36361 aatcaacgct gtatatgaaa acaccatagt atgcgaaccc aatcttggca aaagaggact
    36421 atatcatacc cttagcactg ccaatgacat tcctttagct tgtaattttc tagcttactg
    36481 tgatggagag aatgatatca tcgatatagc caatatctta aatatgcaag cttatgaatt
    36541 taaagaactt ttgaaaaaaa taaaatttta tggactagca aaatgaaata ttttttagaa
    36601 cacaatggca aaaaatactc cgataaggat ttaatagatg ctttttatca actaggtata
    36661 aaaaggggtg atattttatg cgtacataca gaacttatga aatttggcaa agctttgctt
    36721 actaaaaatg attttttaaa aaccttactt gaatgctttt ttaaagtgct aggcaaggaa
    36781 ggcactcttc taatgccaac ctttacttat agtttttgca aaaatgaaac ttatgataaa
    36841 gtgcattcta aaagcaaagt gggagtgctg aatgaatttt ttagaactag cggggggggg
    36901 ttaggcgaac tagcgaccct attttttcct ttgctgtgaa gggtgctaaa gcggatattt
    36961 ttttaaaaga aaactcaagc tgttttggaa aggatagtgt atatgaaatt ttaactaggg
    37021 aaggtgggaa atttatgctt ttaggcttga attatggaca cgccctaacg cattatgctg
    37081 aagagagaaa taccagcttt tgcaggtatt ttaaggaatt taagggcttt gtgattgacg
    37141 agctaggaca aaaaagagaa aaaaggataa attattatgt aagagacttg gaaaaagcct
    37201 atgtatgcag ccttgataag ataaatgaaa tcgtgcggca aacaaggtat tacaaaagca
    37261 taaaatttgc aggagatttt ctagaaagct atgatgctaa agaatatgtc aaagccatag
    37321 gcaacgccct taagcaggat aaatttgcca tatatgaaaa gcttctttta tgaaaaacat
    37381 ttaaaggtag tttatgaaat atttacttga atttgaaaat aaaaaatact ccacttacga
    37441 cttcatagaa actttttaca aactaggact acaaaaaggc gataccttgt gtgtgcatac
    37501 tgaacttttt aatttcggtt ttcccttgct ttctagaaat gaatttttac agactatatt
    37561 agattgtttt tttgaagtta taggcaaaga aggcactttg atcatgccaa cctttactta
    37621 tagtttttgc aaaaatgaag tttatgacaa aataaattcc aaaacaaaaa tgggagcatt
    37681 aaatgaatat tttcgcaaac aaacaggagt aaaacgcaca aacgatccta tattttcttt
    37741 tgctataaaa ggagcaaaag aagaattatt tttaaaagat acaacaagtt gttttgggga
    37801 aaattgtgtt tatgaggttt taaccaaaga gaatggaaaa tatatgacat ttggaggcca
    37861 aggacacaca ctaacacatt atgcagaaga acaatttaat gtattttaca gatatcataa
    37921 aattttctct ggaattttaa ttgatgaaaa caatatatca tacaataaaa ccattagtta
    37981 ttatgttaga aaacttgaca tatcttctga acccaattta attaacatta tcaatattgt
    38041 taataatact aaaaatttta aaaaaaacaa ttttgcagga gatcatataa atatttacaa
    38101 cgctaaagaa tatatagaaa ttttatggaa aaaattagat ataaaccaaa caattctaat
    38161 agaaaattat gatacaatat attaattttc aacattctca agaaagtggt atacaatgga
    38221 aaaacaattt tatgaaattt tagaaaatat acttgaaacc aaagtagatg aaaatacaaa
    38281 tttaagcatg gaaaactgca agaactggac ttctttagct catattgata tcatcatgag
    38341 tttagaagaa gaatttgaaa tcaaatttaa caaagaagat ttaagtctct taaaatctca
    38401 aagcgcttta ctagaaaaaa ttcaaaccct aaaggcagaa aaatgaaaga aaatattgaa
    38461 aaattatttc aagccatcgc tcaaaaaaat cctatccatt ctaaatatct taaaaaaatt
    38521 gaattttcac aagaagacga agaagaattt gataaattaa tttcttatta tattcaagat
    38581 ggtatcagta taaaagaaca atgcgattgt tatttattga tccttaacga tactttagaa
    38641 gaaacaaaat ttttcataga aaatggggct tatcgttatt ctagctttga tgaagttaag
    38701 gataaagttt attttaatga aagctatatg aaacaataca tgataggcct agctctttct
    38761 tcttttgttt ggataactca tattaaagtg agaaagtatt tttcacaata tttgcaaaat
    38821 ttcactccaa aaacaactta ttttgaaata ggccctggcc atggagaata cttcgcaaga
    38881 gcagttaaaa gtggtaaatt ttcagccttt tatggacttg atatctctcc aacgagttgc
    38941 gaacttactc aaaaaatggt aaaacaacaa gtaggaggat tgattacaaa atgcgatttt
    39001 ttatgtcaag atttttttac ttatgatttt gataaaaaag ctgatttgat agtaattgga
    39061 gaagtgctag aacacgtaga aaaacctctt gaatttctta aaagatctaa agaacttctt
    39121 agcgatggag gagaaatttt tgcaactatc cctatcaatg ctcctgctat tgatcatatt
    39181 tatttatttt cccatcctga tgaagttaaa gatttgatag aaaaatcagg cttaaaattt
    39241 aaagcttatg aatgttttat ggcaaatgat tatagtttgg aaaaagcatt gaaatttaaa
    39301 aatgctatca ctatggcagt agttttaaat gcttaataca acactcaatt taccccttca
    39361 tcatataggc gtggcttgta aaaatttaga aaaagaaagg gaatgttttt ttaaactagg
    39421 tttttataaa gaatcagaat ttatagatga aaaacaaggg gtaagaggcg aatttatcat
    39481 tccttgtaat gaagcatttc cacagtatag atttgaactt ttgcaaaatt taaacgataa
    39541 aggaccacta gatagctatt tgaaaaataa taccaaaatg tatcatttag cctatgaaag
    39601 taaaaatatc gcccaagatt taattctttt ggaacaacaa ggaggcattt gtattgttcc
    39661 tattatgcaa gcaagctatt ttgctaaact ttgttttatc atgatgccaa ataggctttt
    39721 aatcgaactt gtggagctaa aatgaatctt ttttcacccc atttaaaacg caatgagctt
    39781 ataaaattcg ccaaagaatt agactttagt aaaagtcaag atcttcttat taatgtccat
    39841 agaaatcatg cttttgaagg agtgcaaagt atcattgctc cttttttaca ttttgctaat
    39901 ttaagagctg agtttaattt cagctcttat gatgatagct tgagttttga taactttaaa
    39961 gaagctagtt tagaactttt atggctagat ttaacccgct ataaaaataa tgtgcaaaat
    40021 tttatagaag aaagactttt agaactaaga aaaatttcac aaaaccctat tttagttctt
    40081 agtttaggag aatttaaaac agataaaaaa attttaaatt gtgaaatttt taacatagaa
    40141 aaactcataa aagagtattt tgatgaagat gatattttag acctagctaa agaagaactt
    40201 acaggctcta agcttaataa taaagccttg atttttttag cacaaatttt aggactcagt
    40261 ctcatccctg cactcgtaaa acccgctctt aaagctcttg tacttgatct tgataatacc
    40321 ttgtatcaag gaattttagg tgaagagggt atagataatc ttaatttaag tcctttgcac
    40381 aaaaccttac aagaaaaaat taaaactttt aaaaaacaag ggtttttact tgccctagct
    40441 tcaaaaaatg aagaaaaaga cgcaaaaaaa ctttttgaaa taaggaaaga tttcatctta
    40501 caatgggatg attttgatac tagaatgatc aattgggagc caaagggtga aaatatctta
    40561 aaaattgcta aaaaatttaa tataaatact aacgctatgc tttttataga tgataatatc
    40621 gccgagcttg aaaataccaa atttacaggc gttaaaacac ttttatgcga tgaaaatata
    40681 ctttataaaa tcaaactttt tcctaatctt ttaaaacttt caaataccaa agaagatcaa
    40741 attcgtgcca aagatatagc agccaatgct ttaagagaag agcttaaaag cttaagcgat
    40801 gaagaatatt ttcaaaatct tgaaatcagc ttaaatttta gcaaaaatga tctgcaaaat
    40861 atccctcgca ttagcgaact tttaggcaaa accaatcaat ttatcgctaa ttacacacgc
    40921 ttaaatcaag aaaaagtcgc acaacacatg caaaaagaac tcattgtaag tgtgagtatg
    40981 agtgataaat taagcgatag tgggattatc gctatttttg ttttttcttg taaagaagga
    41041 aatttattta tcgatgatct ttgcatttct tgtagggctt taggtagaaa acttgaaact
    41101 agaatgtttt ttaaagcctt tgaactagct ttacatttct ttgatcttaa aaacaataat
    41161 gcaaggcttt actatcaaaa aggcgaaaga aatatgccat ttttgagctt tttagaacaa
    41221 atttccaaaa aatttgaaaa aaactcagcc cttattccat ttcaaaattt aaacttcaaa
    41281 ggacttataa tccatgaaaa ctagatttga taaagccaaa atttcaggca tttgcgtaag
    41341 cgtacctgaa cataaaattt gcattgatga tgagttagaa agcgtttttt caaacaatat
    41401 caaaaccctt aaaagaatga aaaaagtcat aggcttaaac acgcgttata tttgcgatga
    41461 aaacacttgc gtaagcgatc ttggaaaaca cgcagccaat acacttttac aaggtttaaa
    41521 tatagataaa aatagccttg atgcactcat cgtagtaact caaagtcctg attttttcat
    41581 gccttctacg gcttgttatt tacatcagct tttaaattta agctccaaaa ccatagcttt
    41641 tgatttaggg caagcttgtg cagggtattt atacggctta tttgtcgctc attctttaat
    41701 acaaagtggc ttaggtaaaa ttttactcat ttgtggagat actttaagca aattcatcca
    41761 ccctaaaaat atgaatttag ctcctatttt tggtgatgga gtaagtgcaa ctttgattga
    41821 aaaaacggat tttaacgaag ctttttttga gcttggaagc gatggaagac attttgataa
    41881 actcatcatt ccaaaaggtg cgatgagaat acctaaagca gatattttca acgatgattc
    41941 actcatgcaa actgaggagt ttagacaatt agaaaatctt tatatggacg gagcaaatat
    42001 tttcaatatg gctttggaat gcgaacctaa aagctttaaa gaaattttag aattttctaa
    42061 agtagatgaa aaagacattg cttttcatct ttttcatcaa tccaatgcgt atttggttga
    42121 ttgcatcaaa gaagaattaa aacttaatga tgataaagtt cctaatttca tcatggaaaa
    42181 atacgctaat ttaagcgctt gttcactacc tgccctactt tgcgaactag atactccaaa
    42241 agaatttaaa gcgagtttaa gtgcttttgg tgcagggctt agctggggaa gtgcggtgtt
    42301 gaatttcaaa gatttataca caaaagatat tttaatttac acaaaggaga aataatgaca
    42361 aaaactgaat ttttagaaga gcttaaagaa gctatgcata gagatgagaa cttaagcgag
    42421 gatatgctac ttgatgatat agatgagtgg gatagcttgg cttttgtatc tgtgatggtg
    42481 ctttataaaa atctttttac tttaaaaatc acagccgagg acttgaaaaa ttgtcaaaaa
    42541 gtaagtgatt taatcaattt agcaaagctt gattaaaacc tttaaggttt taatctttta
    42601 tcaccaattc aaatttgtca cccacatctt taaatataaa cactttattt ccacaaggat
    42661 aagagatgga attttcttgc atgaaagatt ttcttttttg taatttttca agcattaaag
    42721 gaagttcttt tctaaataag gctttatcac ttattctcat accatgattt aagtccttta
    42781 taaatcttcc atcaatctcg ctttcatctt ttatcaaatg taaagtggcg tcatatccta
    42841 actctttata cgctaaaaaa agagtttgtt tatcttttgc tgtattaaat ggatctttta
    42901 aactatgata agatactaaa acaatatttt tgttaacatt ggcttgtata gttagatgag
    42961 ctaaattagg aattattcta attaaataat tctcagtatg aaaaaaatat tttgagccaa
    43021 catccgcatt ccaataagtt ttaataaaaa atcctatttt attatgtgga tattcctcga
    43081 aataatcata ttgtccactt tctctttcta aaataaacat aggagaaggc aaagccgaac
    43141 ctgaattatc aatcacacca tcgacatacc aaggggctat tttagctatg agtaaagata
    43201 ggtatcctcc ataagacccc cccccataaa tttttggtaa atctgcaaat tttggaaagc
    43261 gtttaactaa atcttttaaa gcattgatat gatcaatagc tgccataata ccatagtttt
    43321 gatagtctcc attgggtggg acaatagtgg aagtaaaatt tagtttaaag ttatgatcaa
    43381 gtttattttg catttttaaa ttttctacat gtttcactaa agaattcgct aaaaaaagtg
    43441 cattatcatt atttatttca ccataagaaa aatgaaactg atttaataaa tttttaatat
    43501 tttcaatatc ttcttcttga aaaaatttat atgcactata tttctcaaca tttgatcttc
    43561 tatgacaaaa acaatgataa aaaacatgca ccgctacaac atcaaaattt ttggcgatat
    43621 actctctatc aaagtctaaa aaagaaatat ttgcattggc tccaaagcca cctattataa
    43681 aaactatagc tttcatctct ttttcatcat cataactgat gcggtattca agcttgctag
    43741 ttctttttat atttaattct acatcatcac aagaatcgat ttcaaaggtt tgatttatga
    43801 gcatatattt tcctttttaa ttaataatca attttaactg attttctata tccttaaaag
    43861 taaacacttt atttccacaa ggataagaga tggaattttc ttgcatgaaa gattttcttt
    43921 tttgtagttt ttcaagcatt aaaggaagtt cttttctaaa taaggcttta tcaggtatac
    43981 cacaaccatg atctaaattt ttaataaatt ttccatcaat tttattttca tctaccaaat
    44041 ttaagcttac atcatatcct aaaattttta atatttgcat ggtttgttgt ttaaaattgg
    44101 caggcgttag aggatcttta tcgctatgat aacttacata aataatattt ttattttttt
    44161 gactttgcaa aatcaaatga tccttattta acaatgttct aataaaataa ttttcattat
    44221 taaaaaaata aggtgaattt tctttacgcg tccagtgggt ttttagaaaa cattctatta
    44281 aagtatttgg atcattaaat acataatcac aaccaccctc catttctctt cctaaaatat
    44341 aaatcaaagg tggcaaagcc gaacctgaat tatcaatcac accatccaca taccaagggg
    44401 ctatttttgc tatgagtaaa gataggtatc ctccataaga ccccccccat aaatttttgg
    44461 taaatttgaa aattggggaa aacgtttgat aagatctttt aaagcattga tatgatcaat
    44521 agctgccata atgccatagt tttgatagtc tccattgggt gggacaaaag ttgaggtgaa
    44581 tttcgcttga taattttgtg ctagttttcc ttgtgatttt aaagtagtaa tattctgatt
    44641 aagtaattca taacattgtt gtgcgttctc aagattaaca ttaatattaa cacctatttc
    44701 caataaaacc tgagataaat ttgacacatc atcttttgta aatattgtaa aagcactata
    44761 tttctcaaca tccgaacgcc tttgacaaaa acaatgataa aaaacattta tcgttgccac
    44821 atcaaatttc ttagctatgt aatttctata agagtctaaa aaatgtatat tagcattggc
    44881 tccataacct cctatgataa aaactatagc tttcatttct ttttcatcat cataactgat
    44941 gcggtattca agttttgaag ttcttttgat attaagttct acatcatcac aagaatcgat
    45001 ttcaaaggtt tgatttatga gcatataaag gcctttttta ttaatttata gatattatat
    45061 tacaaaaaat taaaaaggta aatcatgaca actcacatct atgatttttt agaaaaaagt
    45121 ttaatcaaat ttagcgaaaa aactgctttt gtagaaccct ttgccaagga aagaaaagaa
    45181 atcacttata aagactttga tcttttttct aaaaaactag ccagtgaaat tttaaaaact
    45241 ttaaaaaatg ataatcctac tcaagttcct gttttaatca tcttgcctaa agggattgat
    45301 tgtttgattt cattttttgg agtggcactc agtggaaatt tttataccct tttagatgaa
    45361 aaaagtccta aagaaagagt agaaaaagtc atagaggttt taaagcctaa actttttatc
    45421 acttcaaagg acttaaattt taacttagat ttacctacgc tttatacaca agactttgaa
    45481 agttttgata tagatgagag tttaataaag catgccaaag aaaaacatat agatactaat
    45541 ttactctatg ttttctttac aagtgggagc acaggtattc ctaaaggagt aagcatagca
    45601 cataagagtg tgattgatta tactttttgg gtgtgtgaga cttttaaatt tgatgagaat
    45661 gaaattttag ccaatcaagc gccattttat tttgacaata gcattttaga tattttttca
    45721 aatgtaaaat caggagcaac tttacacctt ttacctaatc atctttttgc ctttccaaat
    45781 aaaattttag aatgtcttga aaaagaaaaa gtaagcacta tattttgggt accttcggtg
    45841 ctgatttatt ttgcaaatac tgaagctttg aataatttta gtttaaacgc cttaaaaaag
    45901 atactttttt gtggtgaaat catgcccaat aaacagctaa atatttggcg taaacactta
    45961 cccaatgctt tatttgccaa cctttatggt ccaacagaaa tcactgatgt atgttctttt
    46021 tatatcatca atcgtacttt taaagatgaa gaacttttac ctataggcaa agcatgtaaa
    46081 aacacagaac ttttagtttt tgatgaaaat atgaatttca taagtcctaa acaaataagt
    46141 gttaaagggg agcttttcgt gcgtggaact tctttgtctt tagggtatta taatgacaaa
    46201 gaaaaaacca aacaagcttt tattcaaaat cctttacatg ataattattt agatttactc
    46261 tataaaacag gagatatcgt ttcttataat gaatttggag agcttttatg ctacggaaga
    46321 gcagataatc agataaaata tatgggacat agaatagaac ttggagaaat agaaagcgtg
    46381 ataaattctc atgtgaatat taaaaacagt gcttgtattt ttaaagaaga tattatttgt
    46441 ttttatgaaa gtgaagaaga aattaatttt aaagcttttt tgaaagataa attaccttct
    46501 tatatgatcc caaaaaattt tattaaactc gacaaattta agcttaatca aaatggtaaa
    46561 attgatagaa aggttttaaa agaacttgtt taaataaata ttttataatt tcaaaaaact
    46621 aaagggaaaa aatgcaagaa atcaaacaat tttttatcaa tatagaaaga acagatatca
    46681 atgagagtat ggaaaatcta gtaagtgaag attttatcga tagtatcgat atcatggctt
    46741 tggttgccga aatagaaaaa ttttataaaa aacccttaaa agcagaattt atcacacctg
    46801 aaaattttga aagctttgaa aatatcaaaa aaatgcttga aactgcaatg aaagactaat
    46861 ctttccttgc aagttcaagc tgttctttta aagaactgat gatttcattt ttagaaacaa
    46921 taatttgtgc tataaaatcc gccacatcat cccaatcttt acttagcata tgggttaaag
    46981 tataattttg ttcatattct tcccaattca caggagtaaa aagagaattt ttatgcggga
    47041 aatatttgtt ttttacccat tcaagtgaag aagcaaaata atccacataa actttagcaa
    47101 tatctttttg cactgcaaat tttaatcttt tttctttgct gccttcaaat tttcttcttg
    47161 ccataaaaag caaagaatta agattatcct gctttaaatc tttttgattt aatcttgaca
    47221 taagctccat tcctaaaaga ttaaaacttt catttttggt ttgttttaaa acaaaactct
    47281 catcccattc aagtcctaaa tgataaacaa aatccttaag taaagtccct cctacataat
    47341 cctcccttag aagtcttact atcaaatttt cttctccaaa tacctcagca tgagttttgc
    47401 aaatccattc atagtcaaaa atatattttc taggatgatc ttgcggagca aaatcagcag
    47461 aataataccc catattgttt ttatgatctt gagaacaatg tgagtttaaa taacccaaag
    47521 tatctctaaa atacacaata atataaattt gagtaaaacc taactctctc ataatctttt
    47581 ctaaaatttc tacatgtttt ttggtagaaa aatcccaaac tataccctca gctgaaaaaa
    47641 taaatttttt atctttatgt aaagcacttt cacttttaaa attttctata gctctaagaa
    47701 gtctttcatt tgtgatatga cttaaaacac tctctttttt taaaatatct tctttttgaa
    47761 ccaattctaa aaccatatcc accaaagccc aatgcctatt tgccactcta agactttttg
    47821 ggtaaatata agctttttgc aaaagctttt cttcgttttg catcaagaag ccttgttttt
    47881 cttgatttcc tgtattagta gttcctatat gtaaatatgc tgtcatttta tatcctttat
    47941 ctttatttta atttatcatc tctaactcaa atttatcttc taaatcctta aacacaaata
    48001 ctttattccc acaaggataa gagatagaat tttcttgcat aaaagatttt cttccttgta
    48061 gtttttcaag cattaaagga agttcttttc taaataaagc cctatcagtc attctaagtc
    48121 catgctctaa actttttaca aatctaccat ctatatcatt ttcatccttt attaaatgta
    48181 aagttgcatc atatcctaat tcctgataac acttataaag ttctatttta ttttgcactg
    48241 gcgcacccat atcttgtata ctatgatagc ttacaaaaat ggtattttta tttaaatttg
    48301 attgaatttg aagatggttt gaatttaaaa ttgctctaat taaataattt tcatcaccaa
    48361 aataataaga agaattcata tttctattcc agtatttata tacaaaacaa taaagtctat
    48421 aaccacttcc ttcgaaataa aattcccctt gattcatttc tcttcctaaa atacacgcta
    48481 gaaatggcaa gcaaacacct gaattatcaa tcacgccatc cacataccaa ggagctattt
    48541 ttgctatgag caaggctaag tatcctccat aagacccccc ataaattttt ggtaaatctg
    48601 caaattttgg aaagcgttta actagatctt ttaaagcatt gatatgatca atagctgcca
    48661 taatgccata gttttgataa tctccattgg gtgggataaa atcacaagaa agttctattt
    48721 tttggctttc atcaaccaaa cctgcttgtt tcatttcatt aactttttgc tctataagag
    48781 gaataatttg ttcaaaatta tctttattaa ccgataaatg tcctaaatta atatttttta
    48841 aaataccatt gatacgctct aaatcatctt gattgggaat aagctttgga ttatactttt
    48901 gatcaatact ttgtcttgca caaaaacaat gataaaaaac atgtaccact acaacatcaa
    48961 aatttttagc aatatattcc ctatcaaaat ctaaaaaaga aatatttgca ttagctccaa
    49021 aaccacccac tataaaaact atggctttga tatctttttc atcatcatag ctaatgcggt
    49081 attcaagttt gctagttctt tttatattta attctacatc atcacaagaa tcaatttcaa
    49141 aggtttgatt tataagcaat tttaagcctt ttattgtatt ttaaagacaa ttatacttaa
    49201 attttagtaa aataaaacac aaaaacaagg cttaactatg aaaaatcttt gcataatccc
    49261 tgctcgtggt ggatcaaaaa gaattcctag aaaaaatatc attgattttc taggtaaacc
    49321 tttaatctct tatagcatag aaaatgcttt aaattcaggt atttttgatg aagtggtgct
    49381 ttcaagcgat gatgaagaaa tcatagaagt agccttaaaa tacggtgcaa aagctccttt
    49441 tgtgcgtgat aaaaatttaa gcgatgatta tgcttcaagc actgctgtag tgcaaaatgc
    49501 catagaaatt ttacaaagcc aaaatcaaat ttatgatcat gtctgctgcc tttatgctac
    49561 tgctcctttg ttaaataaag acattttaaa acaagcctat gaaaaattta tacaaaatca
    49621 aagcaagttt ttatttgctg ctactgagtt tgagtatcct atacaaaggg cattttatct
    49681 aaatgaaaac aatcaagttt atatgtttga tgaaaaacat tataaaagtc gttcacaaga
    49741 tctaacaaaa gcttatcatg atgcaggagc tttttatttt ggtacaagca aagcttggct
    49801 tgaggaagat tttatattta aacctcattc tagcgtgttt gtattgccaa gaaatttagt
    49861 ttgcgatata gacaccatac aagatttgga atttgcaaaa atactttata aggtaaatca
    49921 tgaaagtgct ttttagaagc gatagctcca gtcaaatagg ctttggacac attaaacgcg
    49981 atctagtctt agctaaacaa tatagcgatg taagttttgc ttgcttgcct ttagaaggct
    50041 ccttgatcga tgaaattcct tatcctgttt atgagcttag tagcgaaagt atctacgagc
    50101 ttatcaatct catcaaagaa gaaaaatttg aacttcttat cattgatcac tatggcatca
    50161 gcgtagatga tgaaaaactg atcaagcttg aaacaggggt gaaaattcta agctttgatg
    50221 atgaaataaa gcctcatcat tgtgatattt tactcaatgc caatgcctat gcaaaagcaa
    50281 gtgattatga aggtttagtg ccttttaaat gcgaagtaag atgtggtttt tcttatgctt
    50341 taatcaggga agaattttat caagaggcca aagaaaatag agaaaaaaaa tatgattttt
    50401 tcatttgcat gggtggaact gatataaaaa acctttcttt acaaattgct agcgaattac
    50461 ctaaaacaaa aatcatcagc attgcaacca gctcttctaa tcctaatctt aaaaaattgc
    50521 aaaaatttgc aaaattacat aacaatatta gattatttat cgatcatgaa aatattgcaa
    50581 aattgatgaa tgaaagcaat aaactcatca ttagtgcaag ttctttagtc aatgaagcct
    50641 tgcttttaaa ggcaaatttc aaagctattt gttatgttaa aaatcaagaa tctacagcaa
    50701 cttggcttgc taaaaaaggg tatgaagtgg agtataagta ttgataaaac ttaaaaattt
    50761 cacagaactt aattctcaag aaatagagct gatttttaaa tggcgcaatc accccgatat
    50821 caatcaattt atgaaaacaa aatatattga ttttgaagaa catttaagat ttttaaaaaa
    50881 attacatcaa gattctagca aaaaatattt tttagttttt caagatgaac agattatcgg
    50941 cgtaattgat tttgtcaata tcacaactaa atcttgtgaa tttggacttt acgcaaaacc
    51001 taatttaaaa ggcgtaggac aaattttaat gaatgaaatt ataaaatacg cttttgaaaa
    51061 cttaaaagta aatactctta aagcttatgc tttcaaagac aatcgcaaag ctttaaaatt
    51121 atatcaacaa aatcatttta ctatttatga tgaagataaa gatttttacc atatttgcct
    51181 aaagcaatct gactgcaaag ccttgcctag ctaattcttc ttttacatct ttaggggtat
    51241 acttagaaaa atgaaaaata taagcacccg ctaaagcatc agcacccaaa tttaaagcct
    51301 taactccatc acttggctta ccaagtcctc cattgataat aagaggaatt ttaagtttat
    51361 tttgaaagat ctttaaaagt tctaaatcat aaccctttgc ttttccttca aaatccacag
    51421 aggttaaaag aagctctcca gctccttttt tttcatattc taaagcaagt tctaaaggac
    51481 ttttttcgag taattttccc ctgtcataaa cacaaaattg ctctcctttt cttttaacat
    51541 ctatagaaca aactatacat tgagaaccaa aacgattagc cgctttgctt ataaaatcca
    51601 tatcctctaa ggctttagaa ttgatagaaa ttttatccgc gcctaagttt aaaatctttt
    51661 gtatatcttc aagagttttt atcccgccac ctatagttaa gggcataaaa cattctttag
    51721 caagatcttc tatactttca aaatctattt ctccactttt tgaagcatct atatctaaga
    51781 taataagctc atcaacattg cgtgcattat aaattctcat tgttgaagtt aaatgcccta
    51841 tagtgcgaaa atctttaaat tctatacttt taacaagttg tccgtttttt agtaaaacac
    51901 aagggataat tctagttttt aacatttaaa gccttgcaaa attttctaaa agttttaaac
    51961 ctaaattttg acttttttcg gggtgaaatt gcgtcgcaaa gatacgatct ttttgtaaag
    52021 atgcaacaaa tttatgtccg tattgtgctt tagcacttac aaactcatct ttgcatttca
    52081 cataaaaaga atgcacaaaa taaaaatcac tcttattatc tatgccttga tacaaaggaa
    52141 cttgttttaa aatttcaagc tcattccaac ccatatgtgg gatttttaaa tttaaatcct
    52201 cttcaaattt gactacttca ccttctataa aaccaagtcc ttcgcaaact ccaccttcat
    52261 agcccctttc taaaaaaagc tgcattccta aacaaatgcc taaaataggt tttttttgta
    52321 ctaaaacttg ctcttttaaa gcttctataa aaccaagttc ttttaaattt ttcatcgctt
    52381 ctttaaaaga tcccactcca ggtaaaagca atttatctgc tttttgcaaa tcttttggat
    52441 ttttagctat gaaatttata gctcctattt tttcaaaagc cttagcaaca gagtttaaat
    52501 ttcctgcctt gtaatcaatg agcgctatca ttttaaaaca cactcgtctt ttcttaccaa
    52561 agaaccatca taatctctta taaatttacc attttcatca cgtttaaaaa tttttttatt
    52621 ggtaaaagaa tctactattt tttgaaattc ttcctcgcta aaaccactga attcaaggta
    52681 ttttttaata gcctttttag ggggcttgcc atcgtatttt tgtaccaaac gcactccttc
    52741 ttcacggctg atataaccta aacgaatatc caaacaagca ttatccgttg ctctaccaaa
    52801 gccgtatttg cagtatttta aataatcatg cacatgatta gaataacaat ctaaattttc
    52861 aaaattttca taagtagtct caacaggatg atctagagtt aaaaaaccat attttttaga
    52921 aatttcaaga atttttttat aatcccattt aaaataatac cctaaaaata gcccagtaac
    52981 ccctactctt tgaagttctt catcacttgg ataagtatat aaaaacaaat ctttttcagt
    53041 gatgccattc accccaagca tatcagaagc acggtttcct aaaagtccgc caaattcttc
    53101 aagccactct ctgcctaaaa tattcttatt tttactactc gcaggaccgc catactctat
    53161 ctggggactc tccccccaga tgatcaaagg cactccaaaa tttaccgcta tgcgtggaac
    53221 agaagtaaaa attcccaaat ggttttgcca ctcattatcc cctgttctta caaaagcttc
    53281 acgggcaagt ttttgataaa cttttggatc acgcttgata tggatcaaat ccacgcccaa
    53341 atgatttaaa ttgtctaaat ttttgcgccc tattttcgta ggcacactag gctcaaaaca
    53401 cacacacaaa ggattaagtc cgagttcaag cattttaacc acttgaaaag tagaatcttt
    53461 tccgccactt actccgataa cacaatcata aacaggatgt tttttgtatt tttttataag
    53521 ctcaaaaaat tctttttctc tttcttgcca attaatattt tgatttttag cttcttgaga
    53581 atgacaagca tcacaaatcc cttcttcatc aaaatgtaaa tcaggcttag tatctggcat
    53641 cacacatttt ttacaaaatt tcataaattt cctttaatta gtcttaa
//
LOCUS       DAPIWJ010000002        47735 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.002, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000002 DAPIWJ010000000
VERSION     DAPIWJ010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 47735)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 47735)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..47735
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.002"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            23..337
                     /locus_tag="RJ259_000058"
     CDS             23..337
                     /locus_tag="RJ259_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HDV7365810.1"
                     /translation="MSVLVIGADEITPIRAVLHDLGAKKIEHWDARNENRVNRKPIPC
                     DTECIVMLTSFLNHNTMKKIKNEAKKRKIPLVCAKRSVSCVYCEYCKIFNLNKEFSCY
                     KG"
     gene            340..1035
                     /locus_tag="RJ259_000059"
     CDS             340..1035
                     /locus_tag="RJ259_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7365811.1"
                     /translation="MLFGFDDKQEFIPQIYRYLNNQELMLTFLTQYNASVDSALKIPL
                     LYAKNTKSLKMIFGNFLHNIMHVSFGKIQNINIKLNTYAFYFQKRKSLIFNTKISKNV
                     DLLRLLRIYLYGICFDAQILFSSYVYDKVSFQNNGKNIDQDGDLIIIDKKFAILPLCK
                     EINTHNLEIENEIYELLNLIKENNFEKFYIVCPRNKNFTHFIEIKHFLCDLNKTMLKL
                     VPYKISNQIIRRK"
     gene            1035..1526
                     /gene="fldA"
                     /locus_tag="RJ259_000060"
     CDS             1035..1526
                     /gene="fldA"
                     /locus_tag="RJ259_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HDV7365812.1"
                     /translation="MSVAVIYGSAMGNTEGAANTIASKLGISDVFNISDIDAAKMNSY
                     DKLICGTSTWGSGDLQDDWDGFDFSGLSLGGKTVAVFGMGDSESYSDTFCGGMGKLAQ
                     NLKDAGANLVGEVSTDGYTFEASDAVVDGKFVGLALDNDNQEDQTESRIDAWVEQIKP
                     YFA"
     gene            complement(1571..2101)
                     /locus_tag="RJ259_000061"
     CDS             complement(1571..2101)
                     /locus_tag="RJ259_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7365813.1"
                     /translation="MSKFALILSFFIALFMSACTNATFTQSFIQTSNEGIFIRSQKQQ
                     SFKISFQNPSQLQTTLDRDLALKLKNLGLKEVKENADYEILINLVDMKKHSYAQKITT
                     SARFFYDFDPLESDGEWMVENYYTMQVNLQINSKNHNSQKTSLLARTAYLGNKERCQL
                     SLENKIINQIVSFFYF"
     gene            complement(2107..2817)
                     /locus_tag="RJ259_000062"
     CDS             complement(2107..2817)
                     /locus_tag="RJ259_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDV7365814.1"
                     /translation="MKKLSLILVCSASLFAASNSEISDFYSKSIKAQFPNATVSVSNR
                     QKVGNTGFESVIVSVELNGQKQENILFTKDSLITPDLIDLKTGISYAQEYEMKKFQEA
                     RENFTKNAKAVAQKETMVIALGDKNKPAIYVFSDPECPYCREHLAQIDDELKNYQVNY
                     ILTPVHGKSAFEKSALIYKEAKKAKNDKEKIAILNKYYDANIKNYPKVSDAELKEVFS
                     LYEKYRSLGLSATPTIIK"
     gene            complement(2866..4671)
                     /gene="selB"
                     /locus_tag="RJ259_000063"
     CDS             complement(2866..4671)
                     /gene="selB"
                     /locus_tag="RJ259_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HDV7365815.1"
                     /translation="MKSVIIGTAGHIDHGKTSLIKALNGFEGDSLKEEQERQITINLS
                     FSNLKLKDKNISFIDVPGHKDLVKTMVSGAFGFSVCLFVVDINEGLKEQSLEHLEILK
                     ILDIKNIILVLSKCDLCENIEQKSVEILEELKNLDYPILKVFHTSIKNNQGIEELKNY
                     LYTIENKENDEELIFHYYIDRVFSLKGIGTVVTGSLNEGSITLNEKIICLDTQKELIV
                     KNIQNHDTNLEQIKACNRVALSLNCDYKELKKGYLLSKKGYFKAFKECDALVKAKNLQ
                     NSKMIFCVGSRQIECKINILKKLENDEFFVHFSFDKNVFLSFDEAFILLQNNRVIGGG
                     KVLNPLSEPLKKEQKNKFLMFLKNKDFKAAFSFLKDAHKYGFGLLSSYQRFKLSHQKA
                     LKLAKELNQVFVDEKNLNVYHLQSLEEIKNFIKFILEKNPYAMLSAHSLALRITWASE
                     NFCELGLKEMSNLLDFQNGIYFKKGIDFEKLQEKNNNQMYEILKKQGIKPEAPYNLYD
                     FLELDRKSGDNILKKLTQKGLVVRLSHNLFIEKQALEKLMQECLNLLKNQSLDVQSMK
                     EYFNLSRKYAIAYLEYLDKFPQVSKEAEKRFLTNI"
     gene            complement(4668..5990)
                     /locus_tag="RJ259_000064"
     CDS             complement(4668..5990)
                     /locus_tag="RJ259_000064"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HDV7365816.1"
                     /translation="MNKFRTFPQINTLIEDESLKSYPFYIKAFFCKKVVAKLKENFFQ
                     DEISKDKLLLEIKKEIKTFYRKDLQSVINASGVVIHTNLGRSVIHEELYEACKDIICN
                     YSNVEFDLENGKRGSRYALVLEKLKMLFECEDALVVNNNAAAVFLVLNSLCYDKEVIS
                     SRGELVEIGGSFRVPEVIKAAGVKLCEVGTSNKTHLKDYEQAINENTALILKTHKSNF
                     ALMGFHSEVNIKDLHELAKEKELLSYYDLGSGWCENLNEKLIKNEPKIRKLVQECDIL
                     SFSGDKLFGSVQAGIILGKKELIEKLKQNQLLRMLRVDKLTLSFLNESLKAYLQKDYE
                     KIITLKLLNDDLSFIEKKALRVQKELKFQTQLKKSKSLVGGGSMPDKSLDTYILTFQG
                     DALKLQTRFRKENIIGRIENDEFVLDFRTIRENELQKLILTINQMENL"
     gene            6068..7729
                     /locus_tag="RJ259_000065"
     CDS             6068..7729
                     /locus_tag="RJ259_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HDV7365817.1"
                     /translation="MQDFVYIKNDVLIPLPDAIEILDQANDKEALICNDKNQKAQIYA
                     PEINFYLKNSQDEILEQSKNVLTLYEARASVYDLGLDLEQSKEVQNRLIVADGDAQTV
                     EFLKEHEFKVIALSSAEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAEDLSVVRK
                     DFTRQSGCYNLLNFENLEVLFEFLQSKSPKYHYKTYISYNASVCQYHERRSEHCAKCA
                     EICPTVAILKDDENKHLEFSQVDCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKD
                     KKILIIPKKMSLENLNLALPKDVLPFMIEGEKWLSSMHFLTLLQNSGANLVFYTDFVS
                     RGSNEAIMLLNTFFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNTLTTRE
                     NFAKRMQEMIKNEDFGSIESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADKQEN
                     ALKFNASLCTTCGYCELSCAEKDTLKLFRSGMEFRASYFEYQTMAKDELFSCIECGKE
                     FATKKAVEKIANLMKPKFGNDENKIKTLYCCADCKAKVMIKAMIN"
     gene            complement(7722..8531)
                     /locus_tag="RJ259_000066"
     CDS             complement(7722..8531)
                     /locus_tag="RJ259_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDV7365818.1"
                     /translation="MKKILFLFCSFFLAFAKPSLEIPKLSKQAKQNFILENVKFNYNG
                     TIYKIFIAKNKNENSNYKYKIIYLLDGNAFFPLFLNLFNTPVKENLLIIGIGYDNNLA
                     FDTQKRTKDYTPTTNLNKQGGGSKEFRNFLITQLIPYINKMYPIDFSHQILFGHSFGG
                     LFAIDTLLYDSKIFSHYFIISPSLWWDNSEFLPNIIKLQTCPKIYIGLGSLETNSSII
                     KGVAKLNAQKLSEKISKETNCKTHFKLFKNETHGSVISKAMLWMKKLLDLN"
     gene            complement(8528..9823)
                     /locus_tag="RJ259_000067"
     CDS             complement(8528..9823)
                     /locus_tag="RJ259_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7365819.1"
                     /translation="MLNNVLPLSFIVGTRFFGLFIVLPVLSLYALKLEGANEFLVGLL
                     VGVYALTQMILQMPFGILSDKIGRKKTMLIGLIIFIIGSLICSFAENIYTMLLGRMLQ
                     GAGAIGAVATAMISDFITEENRGKAMAVMGSFIGLSFAASMVISPLMSAKWGLSSLFD
                     LSAALSLLCIILLYTVVPKENKITHENEKTPFFHLIKQKNLALMNLTNFMQKMLMSIA
                     FLSIPIILVKHLGFASDKLWIVYSASMVAGFIAMGFAGSLGEKKGLAKQILLLGIVFF
                     ILSYLFFAFSNSIDFFIIAVVIFFIGFNLHEPIMQNCASKFCKVHEKGAALGLFNAFG
                     YGGSFIGGIIGGIFLHLDTLNLLAIILVILALIWLVALFFLKNPADFKNLYLPLETPL
                     NFSTFGENLGVVDIYKNSKNLVVKFDSKLTSKEELEGKL"
     gene            9990..10592
                     /gene="rdgB"
                     /locus_tag="RJ259_000068"
     CDS             9990..10592
                     /gene="rdgB"
                     /locus_tag="RJ259_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HDV7365820.1"
                     /translation="MKIILATSNKHKVLELKEILKDFEIYAFDEVLMPFEIEENGKTF
                     KENALIKARAVFNALDEKQKKDFIALSDDSGICVDVLEGNPGIYSARFSGKGDDKSNR
                     DKLVNEMIKKGFKQSKAYYVAAIAMVGLMGEFSTHGTMHGKVIDTEKGENGFGYDSLF
                     IPKGFDKTLAQLSVDEKNNISHRFKALELAKIILKILNKG"
     gene            complement(10623..13094)
                     /locus_tag="RJ259_000069"
     CDS             complement(10623..13094)
                     /locus_tag="RJ259_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HDV7365821.1"
                     /translation="MFAKLLKFFISRPKSTFFGTLFICLFLSFFAFKLSVDASAESLL
                     LEDDADLKTFREISKHYKSDNFLLLAFKPYDEKPFSNENLAKLKKLHEELEKAPLVER
                     VFSIINAPLLQSSQNTDLKELLKNIPNIESQDINRTKAQNEILNSPFYKNNIISKDGK
                     VTGLIIYLKPDTVYNNLIEKRDLATDEKEKDQIRLAIKEHQDKQKVITKQSLDTIKSI
                     VRNYEKNKDTLYLGGVSMIADDMIAYIKSDLVLYGVSLVFLLGLALYYFFRSWRFVFL
                     PLFICFISLSAASGVFALLNFQITVISSNYVALVLIITLSVVVHLITHFIESTQNHPK
                     AKVERIVLETLLAKANPSLYAIVTTMIGFFSLILSNIEPIIKLGIMMSIGIGLALIFS
                     YLFLASILVLLKPKNYHKKEFKFNLLAFCAKTALDPKKRRMIYEISVLAIILALIGIS
                     KLRVENSFVNYFKDGSEIKKGLLVIDKNLGGTLPLEVIIRFPNNKNDQNASDTLDSFE
                     SEFENLATQETYWFDSKKTRIAKKVHEFLENKEFVGSVLSLNSLLTLGKNINDGKELD
                     DFALAFLNENLPAKFKQDLLSPFVSIENNELRFSMRIVDSDPNLRRNEFLIDLKKQLN
                     ELVKNDGVEVQITGIMVLYNNMLQSLFSSQFDTLIFVILAIFILFIIVFRDLKFSVAA
                     ILVNVIPLSVVFALMGLLGIPLDMMSITIAAIAIGIGVDDAIHYIYRFREEIKNKSLE
                     EAIMISHLSIGSALYYTTISIVLGFSVMMSSNFIPTIYFGILTVFVMILLLSGSLFLL
                     PSFLITIYSKKTKFPNQHKEHILKQ"
     gene            complement(13094..13663)
                     /locus_tag="RJ259_000070"
     CDS             complement(13094..13663)
                     /locus_tag="RJ259_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HDV7365822.1"
                     /translation="MKKIFLILTLFFNAFALQLDEISSTMQKNIDASLKLLQDNKEDK
                     KQAANGIFKLFDSIIDYKLMAKLSLSKNYSKLTPKEQEKFTTAFETSLKKSFTDKLSL
                     YKDQVLKVKNGELKNEKRYFLTTSMVVDGEEKNIIFKFYNDNNNWLIYDVDVLGVSIV
                     QTYRSQFGDILANQGFDALLQKLESIVIE"
     gene            complement(13673..14371)
                     /locus_tag="RJ259_000071"
     CDS             complement(13673..14371)
                     /locus_tag="RJ259_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HDV7365823.1"
                     /translation="MRIKFISFILIFFTIFAFAKEQNLDDFEQEYQNYQVNDPLSGYN
                     KAMTSFNVALYDYGLRPVLKGYNAITPEFIRLGARNFFDNLLAPLRFVSNVLQFKFEE
                     AGEEFKRFTANTIMGFGGLMDVASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPS
                     NLRDTLTLPATWYASFTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPF
                     LRDAYEQRRNELSK"
     gene            complement(14416..14859)
                     /locus_tag="RJ259_000072"
     CDS             complement(14416..14859)
                     /locus_tag="RJ259_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HDV7365824.1"
                     /translation="MIFYSYEEFKEDVKILAKEIKEDFNPDALLAIARGGMSLGHSLA
                     VALKTRQLFALNSIHYDNTKKLDTIEIFNIPDLSKHKKILLIDDIVDSGESLAEIKKV
                     LLEKFPHIELKITTIFYKKTALLEPDFKVKEATEWVDFYWDINLD"
     gene            complement(14873..16192)
                     /locus_tag="RJ259_000073"
     CDS             complement(14873..16192)
                     /locus_tag="RJ259_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDV7365825.1"
                     /translation="MSFFKLKENNTSFKTEVIAGLTTFLAMVYIIPVNSSIVGNTGMP
                     IEALITATALITIVASAFNAFFANTPVAMSVGMGLNAYFTFAVCLGQNIAWQSALGAV
                     FISSIIFLILSFTHFRLWVIRNIPKDLRLAICAGIGCFIAFLGLSQMGVIMHNKDTLV
                     SIGNFKSPHVLFGIFTLALIIFFWAIKLRGAFILGVLVSSIIAWIFHLDNASFPVQIF
                     SLPNFSMENGLGAIFLQLDIKSALNITMIPIILTFFITQLFDSIGTITGVGERGKIFD
                     DPKNGEKKLSKTLMADATGSALGAMTGTSTVTAFVESTTGVESGGRTGLTALVVAICF
                     AFTLFLLPLFKAIPANAIYPVLVMVGILMFMEVKNIDFKDSAIAVASFFTIIMMPFTY
                     SITTGFAFGFLSYLLVRIFKREWDKINLGIIVLSLLSLGNFLLMALQ"
     gene            complement(16202..17266)
                     /gene="mqnE"
                     /locus_tag="RJ259_000074"
     CDS             complement(16202..17266)
                     /gene="mqnE"
                     /locus_tag="RJ259_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HDV7365826.1"
                     /translation="MKNLITKLENEERLNQEEANALWDLDLFTLGKYAHKKRTKLHGK
                     KVYFNINRHINPTNICADTCKFCAFSAHRKNPNPYLMTHEEIMKIVDETVKRETKEVH
                     IVSAHNKDTTWQWYLEIFKMIKEKYPNLHVKAMTAAEIDFLHRRFKMSYEEVIEKMLE
                     YGVDSMPGGGAEIFDEEVRKKICHGKVSSENWLKIHKLWHEKSKQSNATMLFGHIEER
                     HHRIDHMLRLRDLQDQTGGFNAFIPLVWQRDKSFIQTDKIMDSEEILKTIAISRLVLD
                     NIKNIKAYWATMTLNLAMVAQEFGANDLDGTIEKESIQSAGGAKSAKGTSLKTFIDMI
                     KTSNLIPVERDSLYNELKTY"
     gene            17410..19758
                     /locus_tag="RJ259_000075"
     CDS             17410..19758
                     /locus_tag="RJ259_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HDV7365827.1"
                     /translation="MLNKELEIFKKNLSSYTQSCRKFFLKQGAFSLYHSKNMDNFIKK
                     AYDIVLKDYFDDFSPPSDNIPFCVLASKAYANNSLCFNESISLIFVYKDIKAFHLKPM
                     IKAFIEILNDAHLQIDSVILEFNGLYNASNELKTSIIQTRFICGSRILFKGIKIKFES
                     IIKENKNDFAKLLLENFKEFDIPFIKQEFNILKDFGGLNHLRSLESLLVLFKTSPKNY
                     ALNFIDEKKLSELRLAGDFLLSLKSAMNLLSAKDEDEFLLINVHDLSELMYKKAKKHF
                     GANELLVQKALQSMHTIGFYTHFLAKQIQDGLNHTLKQEYKFKTLVEVLEYLLKLEDK
                     HVIFDLNLVFALGRLKYGKKDIEKALILFEKIFYKRHSFCVLKLLLDSGILKDLCKPF
                     WTVRFLSDEEGNYSFDEQVFLMLSEFEKYEDELEILQKLKTDEKMILKLVILLSAIES
                     ENEISLAGIYRAYCSKFDLKNEILEWGLKIFKNNNALKDLVEKEDIYNPIVVSSLVSK
                     LENLENLELLYTLTWLKAKALNYNAFYFRVLDKLLENAKQGFEDENLLEESARRVKKE
                     LTLKRSKIFLEQDEILQDKIIHIKSNLFIIKNTFEDIVMISKLAKENDFKFWFSNETN
                     LSLQIVAPLHFNIAIILSSLTNLNLIFMNFFELFDDKIYLRFEYDNIISDEQKLKLCE
                     LLNSNLSGFNLKKIKKPIIKKDELKLDLNYSKMYAKLGLNTKDQQGLMAYLMNVFNEL
                     ELVLCAAKIQTIRQRTRNIFIFQKNEKLEHSEQKLVNLLISE"
     gene            19763..21559
                     /gene="glmS"
                     /locus_tag="RJ259_000076"
     CDS             19763..21559
                     /gene="glmS"
                     /locus_tag="RJ259_000076"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HDV7365828.1"
                     /translation="MCGIVGYIGNNEKKQIILNGLKELEYRGYDSAGMAVMQEGELSF
                     FKAVGKLENLANKCTDFESQGYGFAIGHTRWATHGKPTEINAHPHLGQYSCVIHNGII
                     ENYKEIKDKLEKEGVSFLSQTDTEVIVQLFEFYARNLGVFEAWQKTIKELRGAFATLL
                     VTKKDPNHVYFAKNAAPLIIGKNANKEWYFSSGDAPLIGSCDEVMYLEDLSLGYASKD
                     ELVVYENDILKSLCFSKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRIQGDEV
                     VFDELNNEDLSQVDEITLCACGTSYHAAMASAYLFERIAKVKAKVEIASEFRYREAII
                     KKDSLFIVISQSGETADTLEALKIAKEQGAKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFMAQKRNLNVSAEIKALLHTPNCVSVKQALHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKHMLYEKTKSNVEELIARDSTVLSISPLEFDLSDDFIKTNEQDHYMCEFFEM
                     MVITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            21562..24688
                     /locus_tag="RJ259_000077"
                     /pseudo
     CDS             21562..24688
                     /locus_tag="RJ259_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344753.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
     gene            24744..26135
                     /gene="fumC"
                     /locus_tag="RJ259_000078"
     CDS             24744..26135
                     /gene="fumC"
                     /locus_tag="RJ259_000078"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HDV7365829.1"
                     /translation="MEYRVEHDTMGEVKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFDGIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSQKVSEELTQLIGTKFISSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELIIPENEPGSSIMPGKVNPTQCEAVTM
                     VAVQVMGNDAAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NRAKIDHNLHNSLMLVTALNPHIGYENAAKVAKNAHKKGISLKESAMELGLVSEEDFN
                     KFVDPTKMIGPKA"
     gene            complement(26165..27208)
                     /locus_tag="RJ259_000079"
     CDS             complement(26165..27208)
                     /locus_tag="RJ259_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDV7365830.1"
                     /translation="MQNGKFFLISFILVILFLLLYLFKGFLLVIIIASLMAVATSNIN
                     AKFLNLTKGHKFLASILTTTCMVLLFFAPFVYAMIELAKALKNFDINLVTQTLDYVKN
                     YQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYASSFTKSGAKFLIDMVLICVFYF
                     FANLYGTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITI
                     FYGYDGILMGVIFAVSSLIPAIGGALIYMPVSLYEFASNNLNSALVIFIYSVIVISFI
                     ADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVST
                     LRMYVILKDKNLI"
     gene            complement(27212..28219)
                     /gene="ruvB"
                     /locus_tag="RJ259_000080"
     CDS             complement(27212..28219)
                     /gene="ruvB"
                     /locus_tag="RJ259_000080"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HDV7365831.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLS
                     EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKP
                     IGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSALKLNYEKTLFE
                     E"
     gene            28310..28720
                     /locus_tag="RJ259_000081"
     CDS             28310..28720
                     /locus_tag="RJ259_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HDV7365832.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            28721..29079
                     /gene="ssrA"
                     /locus_tag="RJ259_000082"
     tmRNA           28721..29079
                     /gene="ssrA"
                     /locus_tag="RJ259_000082"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(29164..31248)
                     /locus_tag="RJ259_000083"
     CDS             complement(29164..31248)
                     /locus_tag="RJ259_000083"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HDV7365833.1"
                     /translation="MQTSPDMFINRELSWLRFNSRVLDQCSKNLPLLEKLKFIAIYCT
                     NLDEFYMIRVAGLKQLFSAGVNASSSDEMTPLQQLKAIRKYLHQEKELLERYFNEITS
                     ELEKENLFIKHYENLDENLKQKCDEYFFSNIFPVIVPIAVDATHPFPHLNNLSFSLAV
                     KICDKAHPELVKFGMIRIPRVLPRFYEVSANIYVPIESIVHQHAEEIFPGYKLLASAA
                     FRVTRNADMVIEEEEADDFMMILEQGLKLRRKGAFVRLQIQKDADEQIVEFLNTHMKI
                     FHKDVYEYSILLNLPSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFDAVEKEDIL
                     IIQPFESFDPVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASDGKQVTVMV
                     ELKARFDEENNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKQGDKLKFYMHLSTG
                     NYNASSAKIYTDVSYFTSKAEFARDTTSFFHILSGFSKNRRLQTLSMSPNQIKEKVLE
                     MIRIETSKKNEGVIVAKMNSLVDSDIIQALYEASMEGVQIDLIIRGICCLKPDEEYSK
                     NIRVRSIIGKYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIYDERSKAKL
                     AQFLRLQLSDNVLAYELKNNGEYEKIPSSEKIIDSQQILEEYVSKIYKTLKKDTDQSR
                     ATHLASKLFKEN"
     gene            31437..31952
                     /gene="nrfH"
                     /locus_tag="RJ259_000084"
     CDS             31437..31952
                     /gene="nrfH"
                     /locus_tag="RJ259_000084"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase small subunit"
                     /protein_id="HDV7365834.1"
                     /translation="MIILRRKILKKTSNLFTIFLVLLFVFFAVGFYTFYNAKGTSYLS
                     NASESCNNCHIMNEVYNEYMAGPHSQKVKGEPRATCVDCHLPHNFVAKWIAKAQSGLG
                     HAYAFTFKLDELPTNLSATEKSRKMVQENCIRCHADFAQTAINATTNPHADKSLNCAS
                     CHKDVGHKHGI"
     gene            31967..33799
                     /locus_tag="RJ259_000085"
     CDS             31967..33799
                     /locus_tag="RJ259_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HDV7365835.1"
                     /translation="MKKNILRLGIVVLVLLIAGVLWLNNDINQKKEDEANKNAIAANA
                     DFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKATEFGGNLAYSKLIRFPQLTILW
                     AGYPFSLDFNEERGHFWVQVDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
                     LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPN
                     DMSLRLTRPAAINALVSRGYEKDPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKV
                     MGETIVDDSSKKWWNGTQKNYDEYEFWRDGNKVKEIETDGIVLTFPWSEWKKGQPFRI
                     EMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYV
                     REGAKKVTQHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSVAHDQRTAEYAIVS
                     LIMDTKKLRDELGNMEKFQSDGKADAKKISEELKEVLELHRKAQMRADFVNAENSTGF
                     HNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFEDIQKFNPGELYYKV
                     DVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK"
     gene            33935..34489
                     /locus_tag="RJ259_000086"
     CDS             33935..34489
                     /locus_tag="RJ259_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7365836.1"
                     /translation="MINKNKLFRQVHIYLSLFFLPCALLFALTGIAYIFGINQDVGLK
                     VEQYQLSKVIESGKEREALIEYLKTNGLKVPSNTNIIKSKDKGITIGGTHYSANITQN
                     STNEYNITLKTRSLLGDMIMLHKDKGAWYFSVLSVGFGITLFMLYISGLMITLFANKK
                     DRSKQFAVLGVGVVVTLLLAYLSL"
     gene            34553..34642
                     /locus_tag="RJ259_000087"
     tRNA            34553..34642
                     /locus_tag="RJ259_000087"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:34587..34589,aa:Ser,seq:gct)
     gene            complement(34715..35707)
                     /gene="ceuB"
                     /locus_tag="RJ259_000088"
     CDS             complement(34715..35707)
                     /gene="ceuB"
                     /locus_tag="RJ259_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin ABC transporter substrate-binding
                     protein CeuB"
                     /protein_id="HDV7365837.1"
                     /translation="MKKSLVFAFFAFFLSLILTACNSNSNENNASSTTKTNTATVKVL
                     PISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVVGVPAKNLP
                     KYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNA
                     NFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKIS
                     AFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVVDRNVILGNK
                     ERAQGILDNALVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK"
     gene            complement(35720..36475)
                     /locus_tag="RJ259_000089"
     CDS             complement(35720..36475)
                     /locus_tag="RJ259_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7365838.1"
                     /translation="MIKLKNITKFYDNKVIISDLSLDFHKGKITSIIGANGAGKSTLL
                     ALASRLIKPSSGEIYIDGMNLKNYKEQILAQKISILKQQNNINLRLKVEELVAFGRFP
                     HSQGRLNTNDKIKINEALEYMELSNLRNEFLDTLSGGQKQRAFIAMIIAQDTEFIMFD
                     EPLNNLDMKHSVQIMQLMKNLVKDFNKSIAVVLHDINFASIYSDEIIALKDGKLLKQG
                     SKDEIINQENLKQIYDMDIPVSQINGKKICIYF"
     gene            complement(36472..37410)
                     /locus_tag="RJ259_000090"
     CDS             complement(36472..37410)
                     /locus_tag="RJ259_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDV7365839.1"
                     /translation="MRKKMLILSFLTLNMIGIFIFVGLNGFDEYALKSRFLQIAAIII
                     VAICIAVSTVIFQTLCNNKILTPAIIGLDSLYMLLQSALIFSFGAANLSVYKNDINFL
                     ITLVCMVVFSLGLYKILFSSDRSIYLIMLLGLVFGTLFSTLSSFFEVLIDPDEFMVIQ
                     GRMFASFDNIAFDVLILAYIISFLSFIWIFRYMKFLDPLNLGKDLAINLGINYQKISK
                     QLMIIIAILTSISTALVGPITFLGLLVVNITYELFKTAKHSILLSACILISILALLGG
                     VFFVSRVFDYNATISVVINFLGGIYFIYLVLKGNKL"
     gene            complement(37403..38371)
                     /locus_tag="RJ259_000091"
     CDS             complement(37403..38371)
                     /locus_tag="RJ259_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7365840.1"
                     /translation="MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQL
                     EIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKFVSPTTAGTMDCAKFGILISLIF
                     FTGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
                     YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNL
                     GISYNGILFLGLMIVSIITSLVIVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALC
                     GALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKVYA"
     gene            complement(38457..39446)
                     /locus_tag="RJ259_000092"
     CDS             complement(38457..39446)
                     /locus_tag="RJ259_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HDV7365841.1"
                     /translation="MRKIALFLSLCVFIWASDLQQALEYEKQGDYKKAMEIYKKLALK
                     NSSVLISQEQNNSSQATQTQNSITIKKEEKQDFSRLALANYLGENESFNPLGISSYKM
                     NYFLPFAYSFNSLGVNNNKSEAKFQLSVKKRLFENLLGLDEKYYIAYTQTSWWQIYEH
                     SSPFRETNYQPEFFIDLPLYLKDYEFFNNLRVGILHESNGKGDENLQSRSWNRIYVST
                     AILYNKFLFVPRLWYRIPENKKDDDNPAILHYMGNFDVNLAYLGDDYFINLMLRNNLK
                     FHNNKGAIQVDLGYDIFNNGIYWYLQYFNGYGESLIDYNKHLQRLSTGFLISY"
     gene            complement(39443..40018)
                     /locus_tag="RJ259_000093"
     CDS             complement(39443..40018)
                     /locus_tag="RJ259_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HDV7365842.1"
                     /translation="MQLNELNCVILCGGKSSRMGQDKSKLILKNQNLTQFQVDKFSKI
                     FKNVYVSAKEDKFENHFSLIKDSLEFEVYSPMLALYSILSNFKNEFVFVLSVDSPKVG
                     ENELLKMLPFLEQNYKIIIAKTPLHKHPLCGFYHSSLAQTCKNFLEKNEQKIGLLFSE
                     IKTKFVEFEDEDAFLNLNFYEEYEKFKSKLK"
     gene            40080..41387
                     /locus_tag="RJ259_000094"
     CDS             40080..41387
                     /locus_tag="RJ259_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HDV7365843.1"
                     /translation="MKYTELLQLQTFFSRFKKIDFIKRINDNILELSFDRERFIFDLT
                     RAMSAIYTAKFNAKNYNAPFDFMLKKYFSNAFIKEVKVLEGNRILCFSVKANKAYKSY
                     ESKIYFEFTGKNTNVILTDEKDLIIEALRHIDKSYRVVKPNVILESLKPYKMDENFEE
                     IKDFADYFSRKFTSIYESKIKQIKNLKLAQVDKKIQNLQELFSSLDEENSLLLKALEY
                     RKRADVLFANLSVLKDYEREFKLDDFEGKELEFKLEFNPKQSANLYYKNAKKLEQKAK
                     NLNIQRQNLKEKLDFTLSLKELLLQAKSEIELEILLPKKNSKKNQDHKQEDLVANFYF
                     NEFKICVGKNEKGNEFLLKNAKKDDLWLHVRDIPSAHTLIVSNKQKISLDVIEFAARL
                     CVSFSKLKKGSYWVDYTLKNFVKVQQKAFVNYTNFKSINITKD"
     gene            41389..41727
                     /locus_tag="RJ259_000095"
     CDS             41389..41727
                     /locus_tag="RJ259_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7365844.1"
                     /translation="MPVSPLGNINYINQNMAYPATQASNELAKEGFAATLNMAEFNEK
                     EKTLNKLEKVNETHEIKEEIKEKAEQEEKKKKHNQEAKTSDDEKNEEDESKDPNFKDA
                     QSIHRLDISI"
     gene            41736..42461
                     /locus_tag="RJ259_000096"
     CDS             41736..42461
                     /locus_tag="RJ259_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HDV7365845.1"
                     /translation="MFNTTRIISALVMIGAIIIIALIDQFFINFIVFAVLLYLSFSEA
                     KKLFALENISIIPLAIAFILGSLSHKALLFGILVLLLVVGYLVYKKASLKPALIYIYP
                     SLPILALWQVYLDQGMFALFWLIIIVAACDSGAYFIGKLMGKTPFSPTSPNKTLEGVI
                     GGLICASVIGTILGVFVYSFWLSLLCSFFVAIFAVIGDLLESYFKREAGVKDSGDLIP
                     GHGGVLDRIDAVIIAAFVMVALL"
     gene            42458..43528
                     /locus_tag="RJ259_000097"
     CDS             42458..43528
                     /locus_tag="RJ259_000097"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HDV7365846.1"
                     /translation="MILFGSTGSIGVNALKLAALKNIPISALACGDNIALLNEQIARF
                     KPKFVSIKDSKNKHLVKHDRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKE
                     LGKNIALANKESLVVAGSFLKGAKFLPVDSEHAALKFLLEGKKNIAKLYITASGGAFY
                     RYKIKDLNQVSVKDALKHPNWNMGAKITIDSATMANKLFEIIEAYHLYDFKEIDALIE
                     PRSLVHAMCEFKNGASTAYFSKADMKLAISDAIFEKQDTPILEAVDFSKMPALKFHPI
                     STKKYPIFKLKNTFLKEPNLGVIINAANEVGVYNFLENKSGFLDIAKCIFKALDHFGV
                     PKISSIEEVFEYDFKTREYLRS"
     gene            43530..44924
                     /locus_tag="RJ259_000098"
     CDS             43530..44924
                     /locus_tag="RJ259_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deacylase"
                     /protein_id="HDV7365847.1"
                     /translation="MKFFLTILFFITSIFALELDFSVGENGKSLDDNNTVLIFGGIQG
                     DEPGGFHAASLLLSDYNITKGKIIVAPNLAFDSIIKRSRGNNGDLNRKFASISPKDPD
                     YKTVQRIKELILLPEVSMVINLHDGWGFYKPTYIDAMQNPKRWGNSSVIDTSEINASK
                     YPDLENIATQTVNSVNSSLADPKHAYHLKNTKTQELGDTEMLKALTYFVISNHKAAFA
                     NEASKNLPVNLRAYYHLLAIENYLKTAGIEFSRDFELTPQGVDKAINKELEVKLFDDR
                     ILLSLKNPRKVINYVPFPVNKELNYNTSNELTAVIAEGNSFYIQYGNRFQTRLYPEYL
                     EFSDAFNEVTFQVDGNETTVPFGTKVKVKENFLIPKIANVRVNIIGFDHSKDESGILV
                     HKKNMQTQYSLDMAGKIYRAEFYELRGANLQQLLEANINSKLIKNAKNLDLNTLKMAR
                     SKDKFLGSILVEFE"
     gene            44921..45928
                     /gene="tsaD"
                     /locus_tag="RJ259_000099"
     CDS             44921..45928
                     /gene="tsaD"
                     /locus_tag="RJ259_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HDV7365848.1"
                     /translation="MKNLILAIESSCDDSSIAIIDKNTLECKFHKKISQELDHSIYGG
                     VVPELAARLHSEALPKILTQCKEHFKNLCAIAVTNEPGLSVSLLSGISMAKTLASALN
                     LPLIPINHLKGHIYSLFLEEKISLDRGILLVSGGHTMVLYLKDDANLELLASTNDDSF
                     GESFDKVAKMMNLGYPGGVIIENLAKNAKLKNISFNTPLKHSKELAFSFSGLKNAVRL
                     EILKHKNLSDDIKAEIAYAFENTACDHIMDKLEKIFNLYKFKNFGVVGGASANLNLRS
                     RLQNLCQKYNANLKLAPLKFCSDNALMIARAAVDAYEKKEFVSVEEDILSPKNKNFSR
                     I"
     gene            45929..46444
                     /locus_tag="RJ259_000100"
     CDS             45929..46444
                     /locus_tag="RJ259_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HDV7365849.1"
                     /translation="MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEISKSLNNL
                     KTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGNFNGTKEVNFRVGDDKECLKLVF
                     IDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
                     ASKTYLLIGEM"
     gene            46444..47685
                     /locus_tag="RJ259_000101"
     CDS             46444..47685
                     /locus_tag="RJ259_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HDV7365850.1"
                     /translation="MIVSKAYEIDSCDDVELGIKRESKLEFKLWYDDEKTPEALVFVV
                     QGMGDDISSIQYVGDYMVRQFNTAVVGVNYHCIGNRPQTGSTFYLDDIDKLILKASCE
                     AADIKLPYDVDKIQDYKQMSEIFHFINYSIVQGKQKGNFTPNYFLNLHVSLQPTKNEY
                     QNFGIMQAQDLLNVTLYLKKHAPFDTMGGGIPVIMIGSSHGGYLAHLAAKIAPWLVDG
                     VLDNSAYAKFLWRVVGFGKEIDFMQCSEFSTFDFFHHIKTHCSTKTFWTSNSSSPRFF
                     SPARRKIRNLLEEDHLLEQSKCLKTCFISYHSLYDEYVSLKEKTMFYEELEKLGFDVT
                     LCSVTKESQVDGKFIKNLNHGMGIPVKLLIKKELPLMLEKIKQNSKKDYKEKCISYPC
                     EDLLYQFSEKDDKMSLKIDKI"
BASE COUNT        16748 a         6680 c         7776 g        16531 t
ORIGIN      
        1 taaaaatcac aaaggagaat ttatgtcagt tttggttatt ggtgcagatg aaatcactcc
       61 tattagagct gttttacatg atttaggtgc taaaaaaata gaacactggg atgcacgtaa
      121 tgaaaataga gttaatcgca agccgattcc ttgtgataca gaatgtatag taatgttaac
      181 aagcttttta aatcataata ctatgaaaaa aatcaaaaat gaagctaaaa agcgtaaaat
      241 tccattagtt tgtgcaaaaa gaagtgtaag ttgtgtgtat tgtgaatatt gtaaaatttt
      301 taatcttaat aaagaatttt cttgctataa aggttaaaga tgttatttgg atttgatgat
      361 aagcaagaat ttataccgca aatttatcgc tatttaaaca atcaagagct tatgttgact
      421 tttttaactc aatataatgc gagcgttgat agtgctctaa aaattcctct tttatatgca
      481 aaaaatacca agagtttaaa aatgatattt ggaaattttt tgcataatat aatgcatgtt
      541 tcatttggta agattcaaaa tataaatatc aagcttaata catacgcttt ttactttcaa
      601 aaaagaaaaa gcttgatttt taatactaaa atatctaaga atgtcgatct tttaagactt
      661 ttaagaattt atctttatgg catttgtttt gatgcgcaaa ttttatttag ctcctatgtt
      721 tatgataagg tttcttttca aaataatgga aaaaatatag atcaagatgg tgatcttatt
      781 ataatagata agaaatttgc aattttgcca ctttgcaaag agattaatac acataattta
      841 gaaattgaaa atgaaattta tgaattattg aatttaataa aagaaaataa ttttgaaaaa
      901 ttttatattg tttgtccgcg taacaaaaat ttcacacatt ttattgaaat aaaacatttt
      961 ttgtgtgatt taaacaaaac tatgttaaaa ttagttccgt ataaaatatc aaatcaaatt
     1021 ataaggagaa aataatgtca gtagcagtaa tctatggtag tgctatggga aatacagaag
     1081 gagcggctaa tacaattgct tcaaaacttg gaattagtga tgtttttaat atctcagata
     1141 ttgatgcagc taaaatgaat tcttacgata aattaatttg tggaacttca acttggggaa
     1201 gtggtgattt acaagatgat tgggatggtt ttgatttttc agggcttagt cttggtggaa
     1261 aaactgtagc tgtatttggt atgggtgata gtgaaagtta ttctgacact ttttgtggcg
     1321 gcatgggtaa attagctcaa aatttaaaag atgcaggtgc aaatttggta ggagaagttt
     1381 caactgatgg ttatacattt gaagcaagcg atgcggttgt agatggtaaa tttgttggac
     1441 ttgctcttga caatgataat caagaagatc aaactgaatc aagaattgat gcttgggtag
     1501 aacaaatcaa accttatttt gcttaataat tcttaaaatc aagagttttt atactcttga
     1561 ttgtcttttc ttaaaaataa aaaaaactca ctatttgatt tataatttta ttttctaaag
     1621 ataattgaca gcgttcttta tttccaagat aagctgttct tgcaagaaga cttgtttttt
     1681 gagaattgtg atttttagag ttgatttgta aattaacttg catagtatag tagttttcta
     1741 ccatccattc tccatcgctt tccaaaggat caaaatcata aaaaaatctt gctgaagttg
     1801 tgattttttg agcataagaa tgctttttca tatctacaag attgattaaa atttcataat
     1861 ctgcattctc ttttacttct tttaagccta aatttttaag ttttaaagcc aaatctctat
     1921 ctagagtagt ttgaagttga ctaggatttt gaaaggaaat tttaaaactt tgttgttttt
     1981 gtgatctgat aaaaatgcct tcattgcttg tttgaataaa gctttgtgtg aaagttgcat
     2041 tggtgcaagc actcataaag agtgctataa aaaagcttaa aattaaagca aatttagaca
     2101 ttaggtttat ttaataatag ttggagtagc gctaagacct aatgagcgat atttttcata
     2161 taaggaaaaa acttctttta attctgcatc acttactttt ggataatttt tgatatttgc
     2221 atcatagtat ttgtttaaaa ttgcgatttt ttctttatca ttttttgctt tttttgcttc
     2281 cttgtagatt agagcggatt tttcaaaagc agattttcca tgtactggag ttaaaatata
     2341 attaacttga tagtttttaa gttcatcatc aatttgagct aaatgttctc tacaataagg
     2401 gcattcagga tctgaaaaaa cataaattgc aggtttattt ttatctccca aagctattac
     2461 catggtttct ttttgtgcta cagctttagc attttttgta aaattttctc ttgcttcttg
     2521 aaattttttc atttcatatt cttgagcata agaaattccc gttttcaagt cgataagatc
     2581 aggggtaata agactatctt ttgtaaaaag aatgttttct tgtttttgtc catttaattc
     2641 aacgcttaca ataacacttt caaaacccgt attaccaacc ttttgacgat ttgatacact
     2701 aacggtagca tttggaaatt gtgctttaat gctttttgaa taaaaatcac taatttctga
     2761 attacttgca gcaaacaaag atgctgaaca gacaagaatt aaacttaatt ttttcatagt
     2821 ttataaatcc tttaaataaa ttatgtttaa ttctataatg attttctaaa tgtttgttaa
     2881 aaatcttttt tcagcttctt tacttacttg aggaaatttg tctaagtatt ctaaataagc
     2941 aatagcatat tttcttgaaa gattaaaata ttctttcata ctttgcacat caagactttg
     3001 attttttaat aaatttaaac attcttgcat aagtttttca agagcttgtt tttctataaa
     3061 aagattgtgt gaaagtctta caaccaagcc tttttgggta agttttttga gtatattatc
     3121 tccgcttttt ctatcaagtt ctaaaaaatc ataaagatta taaggagctt cgggtttaat
     3181 accttgtttt tttaaaattt catacatttg gttattgttt ttttcttgaa gtttttcaaa
     3241 atctatacct tttttaaaat aaattccatt ttgaaaatcc aataaatttg acatttcttt
     3301 aagcccaagt tcgcaaaaat tttcacttgc ccaagtaatc cttaaagcta aagaatgtgc
     3361 tgaaagcatg gcataaggat ttttttcaag tatgaatttg atgaaatttt taatttcttc
     3421 taggctttgt aaatgatata cattaagatt tttttcatca acaaatactt gatttaattc
     3481 ttttgctaat ttcaatgctt tttgatgaga gagtttaaat ctctgatagc ttgaaagcaa
     3541 accaaagccg tatttatgtg cgtcttttaa gaaagaaaaa gctgctttaa aatctttatt
     3601 tttcaaaaac attaaaaatt tatttttttg ttcttttttt aaaggttcgc ttaaaggatt
     3661 taaaacctta ccaccgccta taacacgatt attttgtaat aaaataaaag cctcatcaaa
     3721 acttaaaaat acatttttat caaaactaaa atgcacaaaa aattcatcat tttctagttt
     3781 ttttaatata tttattttgc attctatttg tcttgaacct acacaaaaaa tcattttgct
     3841 attttgtaaa ttttttgctt taactaaagc atcacattct ttaaaggctt taaaataacc
     3901 ttttttactt agcaaataac cttttttcaa ctctttataa tcacaattta aacttaaagc
     3961 cacacggtta caagctttga tttgctctaa attagtatcg tggttttgta tatttttaac
     4021 aatgagttct ttttgagtgt ctaaacagat gattttttca tttaaagtga tgcttccttc
     4081 attaagactg cctgtaacga cagttcctat gccttttaga gaaaaaactc tatcgatata
     4141 ataatgaaaa atcagttctt catcgttttc tttgttttct atggtataaa gataattttt
     4201 taattcttct atgccttgat tattttttat actggtgtga aatactttta aaatgggata
     4261 atctaaattt tttaactctt ctaaaatttc tacacttttt tgctctatat tttcacaaag
     4321 atcacatttg ctaagcacta aaatgatatt tttaatatca agaattttta aaatttctaa
     4381 atgttctaaa ctttgttctt ttaaaccttc gttaatatct acgacaaata aacaaacact
     4441 aaagccaaaa gctccactta ccatagtttt aaccaaatct ttatgtcctg gaacatcgat
     4501 aaaagaaatg tttttatctt ttaatttaag atttgaaaaa cttaaattaa tggtgatttg
     4561 tctttcttgt tcttctttta aactatcgcc ttcaaaacca tttaaagctt taatgagtga
     4621 agtttttcca tgatcaatat gtcctgcggt tcctataata acagatttca taagttttcc
     4681 atttgattga ttgtaagaat aagtttttga agttcatttt ctcgtatagt tctaaaatca
     4741 agaacaaatt catcattttc aatgcgtcct atgatatttt cttttctaaa tcgagtttgt
     4801 agttttaaag catctccttg aaaagttagt atataagtat ctaaactttt atcaggcata
     4861 gaacctcctc ctactaaact tttgcttttt ttaagctggg tttgaaattt taattctttt
     4921 tgcactctta aagctttttt ctctataaag gataagtcat catttaaaag ttttaaggta
     4981 ataatttttt cataatcttt ttgtaaataa gcttttaagc tttcgtttaa aaaagatagg
     5041 gttaatttat ccactcttag cattcttaaa agttgatttt gtttaagttt ttctatgagt
     5101 tctttttttc caagtataat gcccgcttgt acgctgccaa aaagtttatc tccgctaaaa
     5161 cttaaaatat cacattcttg cacgagtttt ctgattttag gttcattctt aatcagcttt
     5221 tcatttaaat tttcacacca gccagaacct agatcataat aactcaaaag ctctttttct
     5281 tttgctagtt catgtagatc ttttatattt acttcactgt gaaaacccat aagagcgaaa
     5341 ttagacttgt gggtttttaa aattagagcg gtattttcat tgatagcttg ttcatagtct
     5401 tttaagtgtg ttttattact agttccaact tcgcaaagct ttacacctgc agcttttatc
     5461 acttcaggca cacgaaaact tccgccaatt tctacaagtt ctcctcttga gcttatgact
     5521 tctttatcat aacaaagaga attaagcact aaaaaaactg ccgcagcgtt gttattgacc
     5581 actaaagcat cttcacattc aaaaagcatt ttaagttttt ctagtaccaa agcatagcga
     5641 gagcctcttt ttccattttc taaatcaaac tctacattag aataattaca aatgatatct
     5701 ttacacgctt cataaagttc ttcatggatt acacttctac caaggtttgt gtgtataacc
     5761 actccgcttg cattaatcac actttgtaaa tctttgcggt aaaaagtttt gatttctttt
     5821 ttgatttcta aaagtagttt atctttagaa atttcatctt ggaaaaaatt ttcttttagt
     5881 tttgcgacaa cttttttaca aaaaaatgct ttgatataaa aaggatagga ttttaaactc
     5941 tcatcttcaa taagagtgtt aatttgtgga aaagttctaa atttgttcat cttaagcctt
     6001 aagaaaatat ttggttattt taacatagaa tttataaaat gatgttttaa agagattaag
     6061 gaagacaatg caagattttg tttatataaa aaatgatgtt ttaatccctt tgcctgatgc
     6121 tattgaaatt ttagatcagg caaatgataa agaagcatta atttgcaatg ataaaaatca
     6181 aaaagcacaa atttatgccc ctgagattaa tttttatctt aaaaattctc aagatgaaat
     6241 tttagagcaa agtaaaaatg ttttaacgct ttatgaagca agagctagcg tttatgattt
     6301 ggggcttgat ttagaacaaa gcaaagaagt gcaaaatcgt ttgattgtcg cagatggtga
     6361 cgctcaaact gtagagtttt taaaagaaca tgaatttaag gttattgctt taagcagtgc
     6421 agaaatttta gctgtttttg gaagtgtagg ggagctttgt gctgtggtta aaaatcaagg
     6481 cgaagaagtg gaaatagatt ttgatttttt actttttaaa gctgaggatt taagcgttgt
     6541 gcgtaaagat tttacaagac aaagtggatg ttataatctt ttaaattttg aaaatcttga
     6601 agtattgttt gagtttttgc aaagcaaaag tccaaaatat cattataaaa cttatattag
     6661 ctataatgct agtgtgtgtc aataccacga aagacgcagt gagcattgtg caaaatgtgc
     6721 tgaaatttgt cctactgtgg cgattttaaa agatgatgaa aacaaacatt tggaattttc
     6781 tcaagtggat tgtttgggtt gtggaggatg tattagcgtg tgtcctagcg gatcgcttga
     6841 ttatgctcct atgccaagag aaagtttttt taccctttgt gagttttata aagataaaaa
     6901 aattttaatc attcctaaaa aaatgtcttt agaaaattta aatcttgctt taccaaaaga
     6961 tgttttaccc tttatgatag agggtgaaaa atggctttct tctatgcatt ttttaacact
     7021 tttgcaaaat agtggtgcaa atttggtttt ttatacggac tttgtatctc gtggtagcaa
     7081 tgaagccatt atgcttttaa atactttttt tgagagaaaa tttcaaaaaa aagctatttt
     7141 tgttgctaaa gatgaaaaag aattgcaaaa tgttttaaaa gagcaagaat tcatacaaga
     7201 tttaaaatat gattttcata ataacacctt aactacaaga gaaaattttg ccaaaagaat
     7261 gcaagaaatg ataaaaaatg aagattttgg tagtatagaa agtggcgaat ggttgcgtta
     7321 tggtaaggta gaaatcaatc ctaatacctg tacgctttgt ctttcttgtg tgggtgcctg
     7381 taatgtagga gctttaatcg ctgataaaca agaaaatgct ttgaaattca atgcttctct
     7441 ttgtacgact tgtgggtatt gtgagttaag ttgtgctgaa aaagatactt taaaattatt
     7501 tcgtagtgga atggagttta gagcttctta ttttgaatat caaaccatgg caaaagatga
     7561 gcttttttcc tgtatagaat gcggtaaaga atttgcgacc aaaaaagctg tagaaaaaat
     7621 agccaattta atgaagccta aatttggtaa tgatgagaat aaaatcaaaa cactttattg
     7681 ctgtgcagat tgcaaggcaa aagtgatgat aaaagcaatg attaattaag atcaagaagc
     7741 tttttcatcc acagcatagc tttagatatg acacttccat gagtttcatt tttaaaaagt
     7801 ttaaaatgag ttttacaatt agtttctttg gatatttttt cgctaagttt ttgagcattg
     7861 agcttagcta cacctttgat aatacttgaa tttgtttcca atgaacctaa tccgatgtaa
     7921 attttagggc aagtttgtaa ttttatgata ttaggtaaaa actcactatt atcccaccat
     7981 aaagaaggtg aaataataaa ataatgacta aaaatcttac tatcataaag aagtgtatca
     8041 atggcaaaaa gtcctccaaa agaatgtcca aagagaattt gatggctaaa atcaatagga
     8101 tacattttgt tgatataagg gatgagttgg gttattaaga aatttctaaa ttctttacta
     8161 cctccacctt gtttatttaa atttgttgta ggcgtataat ctttagtgcg tttttgtgta
     8221 tcaaaagcta aattattatc ataacctatt ccaataatta aaagattttc tttgacagga
     8281 gtgttgaaaa gatttaaaaa aagaggaaaa aaggcatttc catcgagtaa ataaatgatt
     8341 ttatatttat aatttgagtt ttcattcttg tttttagcta taaaaatttt atatattgtg
     8401 ccattataat taaatttgac attttctaaa ataaagtttt gttttgcttg ttttgagagc
     8461 ttgggtatct ctagacttgg ttttgcaaaa gctagaaaaa aagaacagaa taaaaataat
     8521 atttttttca taatttgcct tctaattctt ctttacttgt aagtttgcta tcaaatttaa
     8581 caacaagatt tttagagttt ttataaatat ctacaacccc taaattttca ccaaaagtac
     8641 tgaaatttaa aggcgtttct aaaggtagat aaaggttttt aaaatcagct ggatttttta
     8701 agaaaaataa tgccacaagc caaattagag ctaaaattac taaaataata gctaaaagat
     8761 ttaaggtatc tagatgtaaa aatatccctc cgataatacc acctataaaa cttccaccat
     8821 atccaaaagc attaaataac cctaatgctg cacctttttc atgaacttta caaaattttg
     8881 atgcacaatt ttgcataata ggttcgtgta aattaaaacc tataaaaaaa atcacaactg
     8941 ctatgataaa aaaatcaata gaattactaa aagcaaaaaa aagataagaa agtatgaaaa
     9001 aaacaattcc taagagtaaa atttgtttag ctaaaccttt tttttcgcct aaacttccag
     9061 caaagcccat agcgataaaa cctgctacca tagaagcgct ataaacaatc caaagtttat
     9121 cagaagcaaa gcctaaatgt tttactagaa taataggaat acttaaaaat gctatactca
     9181 taagcatttt ttgcatgaaa ttagtaagat tcataagggc taaatttttt tgtttaataa
     9241 gatgaaaaaa aggagttttt tcattttcat gagtgatttt attttcttta ggtacaacgg
     9301 tataaagtaa aattatacat aaaagagaca aagccgcact aagatcaaaa aggctagata
     9361 aaccccattt tgcactcatt aaaggagaaa ttaccataga agctgcaaaa ctaagtccta
     9421 taaaagaacc cattaccgcc atggctttac cacgattttc ttctgtgata aaatcactta
     9481 tcattgccgt agctactgct ccaatagctc ctgcaccttg gagcattctc cctaaaagca
     9541 tggtgtaaat attttctgca aaagagcaga ttaaagagcc tattataaaa ataatcagtc
     9601 caatgagcat ggttttttta cgaccaattt tatcacttaa aatcccaaaa ggcatttgta
     9661 aaatcatttg ggttaaggcg taaacaccaa ctaaaagtcc cactaaaaat tcattagcac
     9721 cttcaagttt taaagcataa aggcttaaaa ctggcaaaac tataaaaagc ccaaaaaatc
     9781 ttgttccaac tatgaaagat aagggtaaga cattatttag cattatcaat ttcctattaa
     9841 atttgaaatt taaattagga taattttact atgaaatgga ttaagcattg attaacatcg
     9901 ttttaccatt ttgtatttaa aagctacgca caaggataaa ttttataaaa tcatattttt
     9961 gtttttgata ttattttgga gcttttgtta tgaagattat cctagctacg agcaataaac
    10021 ataaagtttt agaacttaaa gaaattttaa aagattttga aatttatgct tttgatgaag
    10081 ttttaatgcc ttttgagatt gaagaaaatg gaaaaacttt taaagaaaac gccttgatta
    10141 aagcaagagc ggtttttaat gctttggatg aaaagcaaaa aaaagatttt atcgctttaa
    10201 gtgatgatag tggcatttgt gtagatgttt tagaaggaaa tccaggaatt tattctgctc
    10261 gatttagcgg taagggcgat gataaaagta accgtgataa acttgtcaat gaaatgataa
    10321 aaaaaggttt taaacaaagt aaggcatatt atgttgctgc tattgctatg gtaggtttga
    10381 tgggggaatt tagtacgcat ggaaccatgc atggaaaagt aatagataca gaaaaaggtg
    10441 aaaatggttt tggttatgat agccttttta ttccaaaggg ttttgataaa accttagccc
    10501 agcttagcgt ggatgagaag aataatatct ctcatcgttt taaagcttta gagcttgcaa
    10561 aaatcatttt aaagatttta aataaaggat aaaaatgaaa aattttttaa aatatatagc
    10621 tattattgtt ttaatatatg ctctttatgt tggtttggaa acttggtttt cttagaataa
    10681 atagtgatta aaaagcttgg taataagaac aaacttccac ttaaaagcaa aatcattaca
    10741 aaaacggtta aaattccaaa ataaattgtt ggaatgaaat tactactcat cataacacta
    10801 aaacctaaaa ctatgctaat ggtagtataa taaagtgccg aacctatact aaggtgagaa
    10861 atcataatgg cttcttctag gcttttgttt ttaatttctt ctctaaaacg ataaatataa
    10921 tgtatagcat catcaacgcc tatgcctata gcaatagcag ctatagtaat actcatcata
    10981 tccaaaggaa tacctaaaag ccccataaga gcaaaaacca cacttaaagg aataacattt
    11041 accaatatag ccgcaactga aaattttaaa tctctaaaaa caatgataaa aagtataaaa
    11101 atagctaaaa ttacaaatat aagagtatca aattgcgatg aaaaaagact ttggagcata
    11161 ttattataaa gcaccattat gcctgtgatt tgaacttcta ctccatcatt ttttacaagc
    11221 tcgttgagct gttttttaag atctattaaa aactcattac gtcttaaatt cggatcagaa
    11281 tcaacaatac gcatgctaaa tcttaactcg ttattttcta tacttacaaa aggtgaaagc
    11341 aagtcttgtt taaatttggc aggcaaattt tcatttaaaa acgcaagggc aaaatcatcc
    11401 aactcttttc catcgttaat atttttccct agggttaaaa gactattaag acttaaaacc
    11461 gaacctacaa attctttgtt ttctaaaaat tcatgaactt tttttgcaat gcgtgttttt
    11521 ttagagtcaa accaataagt ttcttgtgtg gctaaatttt caaattcact ttcaaaacta
    11581 tcaagagtat cgcttgcatt ttgatcgttt ttattatttg gaaaacgaat gatcacttct
    11641 aaaggtaagg ttccacctag atttttatca ataaccaaaa gtcctttttt gatttcacta
    11701 ccatctttga aataattgac aaaagaattt tcaactctga gttttgaaat gcctattaaa
    11761 gctaagatta tagcaagaac tgaaatttca taaatcatgc gacgcttttt aggatcaaga
    11821 gcggttttgg cgcaaaaggc taaaagatta aatttaaact cttttttatg ataatttttt
    11881 ggttttaaaa gaactaagat acttgctaaa aacaaataac taaagataag agctaaacct
    11941 atacctatac tcatcataat gccaagtttt atgataggtt cgatatttga taggattaaa
    12001 gaaaaaaatc ctatcatcgt tgtaacaatg gcataaaggc taggatttgc tttcgctagt
    12061 aaggtttcaa gcactatgcg ctcaacttta gctttgggat gattttgtgt gctttcgata
    12121 aaatgcgtga tcaaatgaac aactacactt aaggtgataa ttaaaaccaa agcaacgtaa
    12181 tttgatgaaa taaccgtgat ttgaaaattt aaaagcgcaa aaactccact agccgcactt
    12241 aagcttataa aacaaataaa aagaggtaaa aaaacaaagc gccatgagcg gaaaaaataa
    12301 taaagtgcaa gtcctagtaa aaatacaaga gaaacaccat aaagcacaag atcagatttt
    12361 atataagcta tcatatcatc agcgatcatg cttacgccac caaggtagag cgtatcttta
    12421 tttttttcat aatttcgaac tatgctttta atagtatcta gactttgttt cgtgataact
    12481 ttttgcttgt cttgatgttc ttttatggca agacgaattt gatctttttc tttttcatcg
    12541 gtagcaagat cgcgtttttc tataagatta ttataaactg tatcaggctt taagtaaata
    12601 ataagccctg ttacttttcc atcttttgag atgatattat ttttataaaa gggactattt
    12661 aaaatttcat tttgggcttt tgtgcggttt atatcttggc tttctatatt tgggatattt
    12721 tttaaaagtt cttttaaatc cgtattttgc gaactttgaa gcaaaggggc attgatgata
    12781 ctaaaaacgc gttctactaa aggggctttt tctaattctt catgaagttt ttttaatttg
    12841 gctaaatttt catttgaaaa aggtttttca tcatagggtt tgaaggctaa aagtaaaaaa
    12901 ttatcacttt tataatgttt tgaaatttct ctaaaagttt ttaaatctgc atcatcttct
    12961 aaaagtaaac tttcagcact tgcatctacg ctaagcttaa aagcaaaaaa gcttaaaaac
    13021 aggcatataa acaacgttcc aaaaaaagta ctttttggac gagaaataaa aaactttaaa
    13081 agctttgcaa acattattct atgacaatac tttcaagttt ttgaagtagg gcatcaaagc
    13141 cttggttggc taaaatatct ccaaattgtg atctataagt ttgtactata ctcacaccta
    13201 aaacatctac atcataaata agccagttgt tattatcatt gtaaaatttg aaaatgatat
    13261 ttttttcttc cccatctact accatagaag tggttaaaaa atagcgtttt tcatttttta
    13321 actcaccatt tttgaccttt aaaacctgat ctttataaag actgagttta tcggtaaaac
    13381 tttttttaag acttgtttca aaggctgtgg taaatttttc ttgttctttt ggggttaatt
    13441 tagaataatt tttcgaaaga ctgagtttcg ccatgagttt ataatctatt atgctatcaa
    13501 aaagtttaaa aattccatta gcagcttgtt ttttgtcttc tttgttatct tgtaaaagtt
    13561 ttaagcttgc atcaatgttt ttttgcatag tgctagaaat ttcatctagt tgtaaggcaa
    13621 aagcattaaa aaataaagtc aagattaaaa atattttttt cattaatttc ctttatttgc
    13681 taagttcatt gcgtctttgc tcgtaagcat cacgcaagaa tggatataaa ttaggcgtgt
    13741 tgtgataaat ttcatcaatt tcatcaagcc taaaactaag ttcattacca aatccataag
    13801 cacttatagc tatacttgcc caagtaggat caatgtaagc ggtaaaactt gcataccaag
    13861 ttgcaggtaa agtaagagtg tctctaagat tgctaggacc aagtataggt aagacaatat
    13921 gaaaaccgct tcctacaccc cagtgagcca aaacggttcc taagtccgcg ggatgttttt
    13981 taagacccat ttttgatgcc acatccataa gtccaccaaa acccatgatg gtattggcgg
    14041 taaatctttt aaattcttct ccagcttctt caaatttaaa ctgcaaaaca ttgcttacaa
    14101 aacgcaaagg agcaagtaaa ttatcaaaga aatttcttgc ccctaatctt ataaattcag
    14161 gagtgatagc gttatagccc ttaagaacgg gacgcaaacc ataatcatac aaagccacat
    14221 taaagcttgt catagctttg ttatatcctg aaagtggatc gtttacttga tagttttggt
    14281 attcttgttc aaaatcatct aaattttgtt ctttagcaaa agcaaaaata gtaaaaaaaa
    14341 ttaaaataaa agatataaat tttattctca agcaaaaact cctaaaaatt ttaaaagtaa
    14401 aattatagca aatttttaat caagatttat atcccagtaa aaatccaccc attcagtagc
    14461 ttcttttact ttaaaatcag gctctaaaag agcggttttt ttgtaaaaaa tggttgtaat
    14521 tttaagttct atatgaggaa atttttcaag caaaactttt tttatttctg ctaaactttc
    14581 tccactatct actatatcat caatgagtag aatttttttg tgcttgctta aatcgggaat
    14641 gttaaaaatt tcaatagtat caagtttttt cgtattatcg taatgaattg agtttaaagc
    14701 aaaaagttga cgcgttttta aagccactgc taaagagtgt cctaaactca tcccccctct
    14761 tgctatagct aaaagtgcat cagggttaaa atcttcttta atttctttag caagaatttt
    14821 tacatcttct ttaaattctt cataggagta aaatatcatt atatatcctt atttattgta
    14881 gtgccataag taaaaaatta cccaaagata ataaacttaa aactataatg ccaagattga
    14941 ttttatccca ttcgcgttta aaaattctta caagtaaata agaaagaaaa ccaaaagcaa
    15001 aacctgtggt gatggagtaa gtaaaaggca tcatgataat agtaaaaaag cttgctacag
    15061 ctatagcact atctttaaaa tctatatttt taacttccat aaacattaaa attccaacca
    15121 ttacaagtac ggggtatatt gcgtttgcag gaatggcttt aaaaagtggc agtaaaaaaa
    15181 gtgtaaaagc aaaacaaata gctacaacta aagctgtaag ccccgttctt cccccgcttt
    15241 caacccctgt agtgctttct acaaaagctg taactgtaga agtgcctgtc atagctccta
    15301 aagccgatcc tgttgcatct gccattaagg ttttgcttag ttttttttct ccattttttg
    15361 gatcatcaaa aatctttcct ctttcaccca cacctgtgat agttcctata ctatcaaaaa
    15421 gttgagtgat aaaaaaagta agaattatag gtatcatagt aatatttaag gcacttttga
    15481 tatcaagttg taaaaagatg gctcctaggc cattttccat gctaaaattt ggtaaagaaa
    15541 agatttgcac aggaaaactt gcattgtcta aatggaaaat ccaagcaata atagagctta
    15601 ctaatacccc caaaataaaa gctccgcgaa gttttatagc ccaaaaaaag atgattaaag
    15661 ctagagtgaa aattccaaaa agcacatgag gacttttgaa atttcctatg ctgactaagg
    15721 tatctttatt atgcatgatc acacccattt gacttaagcc taaaaaagct ataaaacaac
    15781 ctatacccgc acaaattgca aggcgtaaat cttttgggat attgcggatt acccaaaggc
    15841 gaaaatgcgt aaaagaaagt atgagaaaaa taatacttga aataaaaaca gctcctaagg
    15901 cgctttgcca agctatgttt tgacctaaac aaaccgcaaa ggtaaaataa gcatttaaac
    15961 ccattcctac actcatagct acaggagtat tggcaaaaaa agcattaaaa gcacttgcaa
    16021 ctatggtaat taaagctgtt gcggtgatta aagcttctat aggcattcct gtatttccta
    16081 ctatgctaga atttacgggg ataatgtaaa ccatagctaa aaaagtagta agtcctgcta
    16141 taacttcggt tttaaaactc gtattgtttt ctttgagttt aaaaaagctc attttttctc
    16201 cttagtaggt ttttagctcg ttgtataaac tatcgcgttc tacaggaata agatttgaag
    16261 tttttatcat atcgataaaa gtttttaaac ttgtgccttt ggcggacttt gcaccacctg
    16321 cactttgtat actttctttt tctatagtgc cgtctaaatc attagctcca aattcttgtg
    16381 ctaccatggc taaatttaaa gtcattgttg cccagtaagc tttgatattt ttgatattat
    16441 caagcactaa acgagaaatg gcaatggttt ttaaaatttc ttcactatcc atgattttat
    16501 cagtttgtat aaagctttta tccctttgcc aaactaaagg gataaaagca ttgaatccac
    16561 cggtttgatc ttgaagatca cgcagtctta acatatgatc gatcctgtga tgtctttctt
    16621 ctatatgtcc aaaaagcatg gtagcattac tttgcttgct tttttcatgc caaagtttat
    16681 gaattttaag ccaattttca ctgctaactt ttccatgaca aattttctta cgcacttctt
    16741 catcaaaaat ttcagctcca ccacctggca tggaatcaac gccgtattca agcatttttt
    16801 ctatcacttc ttcataactc attttaaaac gacgatgtaa aaaatcaatt tcagcagcag
    16861 tcatagcttt tacatgaaga ttaggatatt tttcttttat cattttaaaa atttctaaat
    16921 accattgcca agttgtatct ttgttgtgag ctgaaacgat atgcacttct ttggtttctc
    16981 gttttacggt ttcatcgacg attttcatga tttcttcatg agtcatcaaa taaggattag
    17041 gattttttcg gtgcgctgaa aaggcgcaaa atttacaggt atctgcacag atattagttg
    17101 ggttgatatg gcgattgata ttaaaataga ctttttttcc atgaagttta gtgcgttttt
    17161 tgtgagcgta tttgcctaag gtaaaaagat ctagatccca aagtgcattg gcttcttctt
    17221 ggtttaatct ttcttcattt tctagtttgg tgattaaatt tttcatttta attttactct
    17281 tttgctgttt ttaaataaag cattataatt tttgcttact gaaaaagagt ttatagaaaa
    17341 agccaaaata aaagatattt ttgttaagat tattattaaa atattaaaat tttaaagaga
    17401 gtagaaattt tgttaaataa agaattagaa atttttaaaa aaaatcttag ttcctatacc
    17461 caaagttgta gaaaattttt tcttaagcaa ggggcgttta gcttatatca ttctaaaaat
    17521 atggataatt tcataaaaaa agcttatgat atagttctta aagattattt tgatgatttt
    17581 tcacctccaa gtgataatat ccctttttgt gttttagcaa gcaaagcata tgcaaataat
    17641 agtctttgtt ttaatgaaag tatttctttg atttttgttt ataaagatat taaggctttt
    17701 catttaaaac ctatgattaa ggcttttatc gaaattttaa atgatgcgca tttgcaaatt
    17761 gattcggtta tcttagaatt taatggactt tataatgcta gcaatgagct taagacttct
    17821 ataatacaaa ctcgtttcat atgtggttct aggattttat ttaaagggat taagataaaa
    17881 tttgagagta ttataaaaga aaataaaaat gattttgcca agcttttgct agaaaatttt
    17941 aaagaatttg acattccatt tataaagcaa gaatttaata tcttaaaaga ttttggcgga
    18001 ttaaatcatt taagatcctt ggagagtttg cttgttcttt ttaagacttc tccaaaaaat
    18061 tatgctttaa attttataga tgaaaaaaaa ttaagcgagt tgcgtttagc tggagatttt
    18121 ttactttctt taaaatcagc gatgaattta ttaagtgcta aagatgagga tgaattttta
    18181 cttattaatg ttcatgattt gagtgaatta atgtataaaa aagctaaaaa acattttgga
    18241 gcaaatgagt tgttggttca aaaggctttg caaagtatgc atactatagg tttttataca
    18301 cactttttag caaagcaaat tcaagatgga ttaaatcata ctcttaaaca agaatataaa
    18361 tttaaaactc ttgtggaagt tttagaatac ttattaaaac ttgaagataa acatgttatt
    18421 ttcgatctta acttggtttt tgccctagga agattgaaat acggtaaaaa agatatagaa
    18481 aaagctttaa tactttttga gaaaattttt tataaaaggc atagtttttg tgttttaaaa
    18541 cttttgcttg atagtggaat tttaaaagat ttatgtaagc ctttttggac agttcgtttt
    18601 ttaagcgatg aagaaggaaa ttatagtttt gatgagcaag tttttcttat gttaagtgaa
    18661 tttgaaaaat acgaagatga gcttgagata ctccaaaaac ttaaaaccga tgaaaaaatg
    18721 attttaaagc ttgtgatact tttaagcgct atagaaagtg aaaatgaaat ttctttagca
    18781 ggcatatata gagcgtattg ctccaaattt gatttaaaga atgaaatttt agaatggggt
    18841 cttaagatat ttaaaaacaa taatgcctta aaagatcttg tagaaaaaga agatatatac
    18901 aatcctattg ttgtaagtag cttggtttct aagctagaaa atttagaaaa tttagagctt
    18961 ttatacactt taacttggct aaaggctaag gctttaaatt ataatgcttt ttattttaga
    19021 gttcttgata aacttttaga aaatgcaaaa caaggttttg aagatgaaaa tctacttgaa
    19081 gaaagcgcaa gaagagtaaa aaaagaatta acacttaaaa gaagtaagat ttttttagag
    19141 caagatgaaa ttttgcaaga taaaatcata catatcaaat caaatctttt tattataaaa
    19201 aatacttttg aagatattgt tatgatttct aaattagcca aagaaaatga ttttaaattt
    19261 tggtttagca atgaaacaaa tcttagtttg caaattgttg caccacttca ttttaatatt
    19321 gccattattt taagttcttt aacaaattta aatcttattt tcatgaattt ttttgaactt
    19381 tttgatgata aaatttattt aagatttgaa tatgataata ttatcagtga tgagcaaaaa
    19441 ctaaaacttt gcgagctttt aaattcaaat ctttctggtt ttaatttgaa aaaaattaaa
    19501 aagccaatca ttaaaaaaga tgagttaaaa ttagacttaa attattctaa aatgtatgcc
    19561 aaattaggtc ttaatactaa agatcagcag ggtttaatgg cgtatttgat gaatgttttt
    19621 aatgaacttg aacttgtttt atgtgcagca aaaattcaaa ccataagaca aaggacgcgt
    19681 aatattttta tttttcaaaa gaatgaaaaa ttagaacata gcgagcaaaa gttagttaat
    19741 ttattaataa gtgagtaaaa aaatgtgtgg aatcgtaggc tatataggaa ataatgaaaa
    19801 aaaacaaatt atactaaatg gacttaaaga attagaatat cgtggctatg atagtgcggg
    19861 tatggcagtg atgcaagaag gagagcttag tttttttaaa gctgtaggaa aacttgaaaa
    19921 tttggcgaat aaatgcacgg attttgaaag tcaaggttat ggttttgcta taggtcatac
    19981 aagatgggca actcatggta agcctactga aatcaacgca catcctcatt taggacagta
    20041 ttcttgtgtg attcacaatg gtattataga aaattataaa gaaatcaaag ataaacttga
    20101 aaaagaaggc gtgagttttt taagtcaaac cgatacagaa gttattgtcc agctttttga
    20161 attttatgca agaaatttgg gagtttttga agcttggcaa aaaaccatca aagaacttcg
    20221 cggtgctttt gctactttgt tggtaacaaa aaaagatccc aatcatgtgt attttgcaaa
    20281 aaatgctgct cctttgatta taggtaaaaa tgcaaataaa gaatggtatt tttcttcagg
    20341 tgatgcgcct ttgataggaa gttgtgatga ggtaatgtat cttgaagatt taagcttggg
    20401 atacgcgagt aaagatgagc ttgtcgttta tgaaaatgat attttaaaat cactttgttt
    20461 ttctaagctt tcaggcgata aggcttatgc aaaaaaagac ggctttcgtt tttttatgga
    20521 aaaagaaatt tatgaacaaa gtcgcgtgat gagtgaagtt ttaatggggc gtattcaagg
    20581 cgatgaagtc gtttttgatg agctaaacaa tgaagattta agtcaagtag atgaaatcac
    20641 gctttgtgct tgtggaacaa gctatcatgc tgcaatggca agtgcttatt tgtttgaaag
    20701 aattgctaaa gttaaagcta aagtagaaat tgcaagtgaa tttcgatacc gtgaagcaat
    20761 tataaaaaaa gattctttat ttatcgttat ttctcaaagt ggagaaacag cagacacttt
    20821 agaggcttta aagattgcaa aagagcaggg tgctaagact tttgcaattt gcaatgtgga
    20881 taattctaat atagtgcgtt tagcacatct aagtctttta actcgtgcgg gcatagaaaa
    20941 aggagttgct tcaactaaag cttttgctac tcaggtttta acactttgga tgcttgctat
    21001 ttttatggca caaaaaagaa atttaaatgt ttctgctgaa attaaagcac ttttgcatac
    21061 tccaaattgc gtgagtgtaa aacaggcttt acatgaaaaa attcatcgtt tatccaagcg
    21121 ttatttagat ggacatggct ttttctttat aggcagagat gtgttttatc ctttggcttt
    21181 agaaggagct ttgaaactta aagaattatc ttatcttcac gctgagggtt atcctgcagg
    21241 agagatgaaa catggcccta ttgctttggc tgattctaag ctttatacta tagctttaat
    21301 gccaaagcac atgctttatg aaaaaacaaa atcaaatgtt gaagagctta ttgctaggga
    21361 ttctacagtg cttagcattt cacctttaga atttgattta agtgatgatt ttataaaaac
    21421 caatgagcaa gatcattata tgtgtgaatt ttttgaaatg atggtcatta ctcaactttt
    21481 ggcgatggaa atttccataa gacttggcaa tgatgtggat atgccaagaa atttggctaa
    21541 aagcgtaacg gtagaataga aatgaaaaaa tttttttgtt taactttagt ttgtaaactt
    21601 tttgctttaa gcgaatttga acttcatcat attgataaag tacataagct agggtatagc
    21661 ggagatacta ttataatagg tgtagccgat gatgctttta atcaagatca tattagttta
    21721 aaggataaga ttttaaagtc tacttatcct actgatacag ctgggaaaca gcttatacct
    21781 gatttgaaaa aatcaacaca cggaagtcat gtagcaggta tagctgttgg agcaaagata
    21841 ggcgatagca aaccttatgg agtggcttat ggggcaaaat tttatggagc tggggtgttt
    21901 ccaaatggct cttacactca aattcctgat atttataatt ttttcaaaga tgtgagtatt
    21961 attaataata gctggggtat taatttttat ccttatttta atcttaaggc ttcaaattct
    22021 ggattagtag attgtactca aactaatcaa gggacaagct ataatatctg taatactcct
    22081 ttggaatatg ttatgaaagc agataaggtt gctaatgata tgatgaggct tagcaaggac
    22141 aagggagtat taaatgtatt tgctgctggt aatgaaggaa ttcttagccc tgctttgcat
    22201 gcgattttac caagttatga tgaatcttta agagcttggt tggctgttgg agctttggat
    22261 gcaaatgaga ttactttaga atcagatggg actttaataa ttaaaagtca aggtttggct
    22321 gattttagta atggttttaa gggagctacg aatttttctt tagttgctgc tggagtaaat
    22381 attaataatg ttgattcaag cactaatgat aagtttacaa aaaaaagtgg aacttctatg
    22441 gcagcaccta tggtaagtgg aacagcggca ctggtcaagc aaaatttccc ctttttggat
    22501 ggtaagcaaa ttgctgatat actattaagt acagcaaata aaaattataa ggctccaaaa
    22561 tttactgtta aacaagtaac cgatggaaca aatcaaccta aatttcttat tgtgtatatt
    22621 tcgcaagatc cacctgggat agaagatgaa ataaaacggg atttaaaaca gctttacaat
    22681 ggaatacaag ttcaagttaa tggacaatgg attgattata gtgattatat ttgggataat
    22741 agagatagtg cgcagtcaca aaaacttaat acttccacta ttagttctat taatggagta
    22801 gttagagttg agaaagaaga attatttgga caaggaattt tagatgcaca aaaggcgtta
    22861 aaaggactga gtattttaga tgcaaacaga ctcagtgatc aggatgtatt aaaatatgag
    22921 caagaaccta atacagctta ttatactata aacactgcag gttatgatgc tgaattttct
    22981 aatgatatta gtcaaagaaa atgggatgaa agtactcatt tatcaagtgc tattaataaa
    23041 cctacacatt tagctaatct taacataggg ttatctaaag aaggtgaagg tattttgatt
    23101 atcagtggtc aaaatactta tgagggcgca actttaatca aacaaggaga attaaagctt
    23161 aaaggaaaag ttaaaaataa tgcttatgta gaacaaaaag caatattaag cggtaatggt
    23221 attgtagggc aaaatttaaa caataaaggc atagttagac ctggaaatga agatttgaat
    23281 gatttaaccg tgcaaggaac ttatactcaa gaaggagttg attctaaatt gcaacttgat
    23341 tttggtaatt ataaaaattc taaactgatt gcaaaaactt atgatattaa gagcgggaat
    23401 ttagaatata ttcctttacc taaatactat atcttaaata agccagtgaa aattaatttg
    23461 ggagatttgg aaaaaagttt atcatctttt aatcatgttt tgatacaaaa tacctatgct
    23521 ttaaattttt gattttgttt taagtgatga tttagtgagt attaataaaa ccttaataaa
    23581 acctaattta aagccaaatg cttacgaaat tcctaataca agcttgggaa atgctttaag
    23641 acaattgcga tctagggcag acttgagtca gacttatcag gaattttttg cttctttaga
    23701 taatggaata gatgtaaaga ctaaattaaa tagaatagaa ggttcagggt atttaagcac
    23761 ttttagtaat cataatcaat ctaatttaat gcaaaataat atgttattta cccttcatcc
    23821 tcttaatatt aataattttg cacaaaacaa taatatctta cttgctagta cttatttacc
    23881 tagaattttt agcaatgaag aatatttttg gcatcttact ccaagttata aatactataa
    23941 agataaagat ttttcaggtc aaaaaacagg tgctaatatc tctttaggag aaaatttctc
    24001 atcaggcttt ttagcttatg ctttatctct ttctagcgct aaatttaatt ttaataatgg
    24061 tagtgatttg aagagttata acatggattt attgcttaat tataaccatg atttagattt
    24121 tataaaaata ttaagtggat taggtatagg tgtaggattt aatactctta atcgttttgt
    24181 agtagagcag ccaattgaag gcaaatataa aacattgcaa acttcagccc agcttggtgt
    24241 aactaaagat attattttag gtcaagattt tatttttaat cctttaatgt attttacaca
    24301 tagttttttt tatcaagaag attttaaaga aaataaaagt ccttttgcta aaaattatga
    24361 aagtttaaaa catcatagca taaatgcaaa tttaggtttt aatcttgcta aaaatataga
    24421 gcaagatgat tatcaagctt ctttttctac ttttgtaatt tttgaaaaaa gaatttatgg
    24481 aagaacttta gaaaataagg ctagttttgt tgattttcct attgctttta ttcaaaaata
    24541 taaattaaaa gataatattt taagtcaagg ttttaattca gaatttttat ataaaaacaa
    24601 tgtattttgg cagtttatgt taatgaatag attttctcat aatgcctatg aattgcattt
    24661 aatgagttca gtgggaaaac gtttttgaaa gtatttattt ttttagctta taataaataa
    24721 aattttaatc aaaggaaaaa attatggaat acagagttga acatgatacc atgggtgaag
    24781 ttaaggttcc aaatgacaaa tattggggag ctcaaactga aagaagtttt gaaaatttca
    24841 aaatcggttg tgagaaaatg ccaaaggttt taatctatgc ttttgcaaat cttaaaaaat
    24901 ctttagcttt ggtcaataac aaacttggca aacttgatga tgctaagaaa aatgctatag
    24961 ttcaagcttg cgatgagatt atcgcaggta aatttgatga taattttcca cttgcgattt
    25021 ggcaaacagg ttcaggcaca caaagcaata tgaatatgaa tgaagttatt gcaaatcgtg
    25081 ccactgaaat catgggcggg gattttcgca aagaaaagct tgtacatcca aatgatcatg
    25141 ttaatatgag tcaaagttca aatgatactt ttccaacagc tatgagtatc gttgcggttg
    25201 agcaagtaga gaaaaagctt atccctgcgc ttgatgagct tattgcaact tttgaaaaaa
    25261 aagtaaaaga atttgatggt attatcaaga taggacgcac gcatttacaa gatgctactc
    25321 cacttactct agcgcaagaa tttagtggat atctttctat gcttttacat tcaaaagagc
    25381 aaatcatcgc ttctttaccg actttaagag aacttgccat aggaggaacc gcagtgggaa
    25441 cagggcttaa tgcacatcca gaattaagcc aaaaagtaag tgaagagcta actcaactta
    25501 taggtacaaa atttatttca agtccaaata aatttcatgc tttaacaagt catgatgcga
    25561 ttaattttac tcatggagct atgaaaggtt tggctgcaaa tttaatgaaa attgcaaatg
    25621 atataagatg gttagcttca ggcccaagat gcggtcttgg tgagcttatc atccctgaaa
    25681 atgagccagg aagttcgatt atgccaggta aggtaaatcc tacccagtgt gaagctgtta
    25741 ctatggttgc tgtacaagtg atgggaaatg atgcagctat cggatttgca gcaagtcaag
    25801 gaaattttga acttaatgtg tttaagcctg tgattattta taatttcttg caaagtcttg
    25861 atttgttggc tgattctatg cattcattca atatccattg tgctgtaggc atagaaccaa
    25921 atcgtgcaaa aatcgatcat aatcttcata attctttaat gctagttacc gctctaaatc
    25981 cacacatagg ttatgaaaac gctgctaaag tagccaaaaa tgcccataaa aaaggtattt
    26041 ctttaaaaga aagcgcaatg gagcttggtt tggttagcga agaagatttc aataaatttg
    26101 ttgatcctac taaaatgata ggcccaaaag cctagaacat caaacttgcc ttttttaagg
    26161 caagttaaat taaattctta tcttttaaaa tcacatacat tcttaaagtt gatacaaaaa
    26221 aggttaaaat cgcaggacct aatataatac cccaaaaacc aaaggtagaa attcctgcta
    26281 tcatagccaa gaaaattaaa agttcattga ttttagtagg ggtttttaca agttttttgt
    26341 tgatccattt gatgattaaa ggtttgatta aagtatctgc tataaaagaa attacaatta
    26401 cagaataaat aaaaataaca agagctgagt taagattgtt tgaggcaaat tcataaagac
    26461 ttacaggcat ataaattaaa gcacctccta tagcaggtat gagagaactt acagcaaaaa
    26521 ttactcccat taaaattcca tcataaccat aaaatattgt gattaaacca aaaagcgcac
    26581 cttgaaatat cgctacaatc accatagagt aaagtacaac agccataaca ttacccacct
    26641 cgcttaaaac atcatcaagt tcttttttat caataggaat gatggattta agatagataa
    26701 caagttctgt tccatataga tttgcaaaga aataaaatac gcaaattaaa accatatcta
    26761 taagaaattt agctcctgat tttgtaaaac ttgaagcata acttagaatt tgtttagaaa
    26821 tactatttaa atctatagat gctaaaaatt ctttgatttt aggttctaaa aaattaaagc
    26881 tttcaggcaa ggtaaattga taatttttga cataatcaag agtttgtgtg actaaattaa
    26941 tatcaaaatt ttttaaagct ttggcaagtt ctatcatagc ataaacaaaa ggtgcaaaga
    27001 aaagcaaaac catacaagtt gttgtaagaa tggaagctaa aaatttatgc cctttagtaa
    27061 gatttaaaaa tttcgcattg atatttgagg tagctaccgc cattaaacta gctatgataa
    27121 ttacaagtaa aaaaccttta aaaaggtaaa gcaaaagaaa taaaatgact aaaataaagc
    27181 ttataagaaa gaattttcca ttttgcaaaa tttactcctc aaataaagtt ttttcatagt
    27241 ttagttttaa agcactataa ctttttgcac ttgctatacg cccttttgca gtgcgttcta
    27301 tatagccatt agctaataaa taaggctcga ttacatcttc tatggtattt tcatcttcac
    27361 ttaaagccgc agcaatactt gcaagcccga taggtttttg cttagcagcg gttaaaagtt
    27421 caagatatct taaatccatc gcatcaaaac caagctcatt aacccctaaa gaatttaagg
    27481 cctcattagc ccttttttct gtgataatct cttcatcatt aacatcggca aaatctctaa
    27541 ctctttttaa aagccttaga gctattctag gggttgaacg acttctttta gcgatctcaa
    27601 gtgcggcttt ttcttcgcaa gttttattaa gttttaaagc tgctttttgc aagatgaggg
    27661 caagttcgct atctttgtaa aattctaatc taaattgcat accaaaacga tcacgcaaag
    27721 gattgctaag catacctgca cgcgttgtag cccctataag agtaaatttt ggtaaatcga
    27781 tttttatggt ttgagcagct ggaccactac ctatgataat atcaaggcgg taatcctcca
    27841 ttgcagggta aagcacttct tcgatagcag gacttaagcg atgaatttca tcgataaaaa
    27901 gtatatcccc ttcgctaaga ttggttaaaa tagcggctaa atctccgctt ttttctatca
    27961 taggagcggc ggttgttttg atatttgcac tcatttcata ggagatgata ttagctagtg
    28021 ttgtttttcc aagtcctgca ggaccactaa aaagtatatg atctaaacat tcattgcgtt
    28081 ttttggctgc agctataaag acatttaaat tttttttaat gctttcttga cctatataac
    28141 catcaaaatt tgaaggacgc aacgaagttt cgtaagtttc atcaaaggag tatttttcta
    28201 tttctactat tctatccata tctttgctta tattttggaa aaattaaaat aagattttag
    28261 ctaaaatttg ctagaattta cattaaactt taatgattat ggtttaaaaa tgggaatttt
    28321 aacaaaatta gaattagatt atgaaattga cgatatagaa aaatttttac aattttttag
    28381 aaccatgtgc gataggtttg aacctttaat catcaagctt ggaagcgata gtgtgcgtta
    28441 taaagaagcc ataaaagagc ttgaaacttt agcacacaat accgcttggg cagcaagacg
    28501 cttaaatctt gaagaagtga ctgatttttg tgtattttgt gaagagatga tggcgcaagc
    28561 aaatcgcttt aatgggcctg ctagtgatga atttacggat tggatgcttt tgatgagtga
    28621 tcagtttgaa aaatattgtc gttcatatga aaatgatgat tctgttttag cggtttttaa
    28681 tcctttaatt gttaatgttc caaatattat ttctaaataa gggagcgact tggcttcgac
    28741 aggagtaagt ctgcttagat ggcatgtcgc tttgggcaaa gcgtaaaaag cccaaataaa
    28801 attaaacgca aacaacgtta aattcgctcc tgcttacgct aaagctgcgt aagttcagtt
    28861 gagcctgaaa tttaagtcat actatctagc ttaattttcg gtcatttttg atagtgtagc
    28921 cttgcgtttg acaagcgttg aggtgaaata aagtcttagc cttgcttttg agttttggaa
    28981 gatgagcgaa gtagggtgaa gtagtcatct ttgctaagca tgtagaggtc tttgtgggat
    29041 tatttttgga caggggttcg attcccctcg cttccaccag ttttaaatca atgtttattg
    29101 aaatttgaag attaataaaa attcatagtt taaagttttt aaggtgtaaa accctaaaaa
    29161 cttttagttt tccttaaaaa gtttggaagc taagtgcgtt gcacgacttt gatctgtatc
    29221 ttttttaagt gttttataaa ttttacttac atattcttct aagatttgtt gagaatctat
    29281 gattttttca gaagaaggaa ttttttcata ctctccattg tttttaagct cataagctaa
    29341 aacattatca ctaagttgca agcgtaaaaa ttgagctaat ttagctttac ttctttcatc
    29401 atatatagga gtcataagtt ctaagcgacg ctctaaattt cttggcatcc aatctgcact
    29461 cgatataaaa taatttggct cactatgttt aaaataaaat actctagcat gttctaagta
    29521 ttttcctatg atgcttctaa cgcgtatgtt tttgctgtat tcttcatcag gttttaagca
    29581 acaaattccg cgtatgataa gatcgatttg cactccttcc atacttgctt cataaagcgc
    29641 ttgtatgata tcactatcta caagagaatt cattttagct acaatcacac cttcattttt
    29701 cttgcttgtt tcaatgcgta tcatttctaa aactttttct ttgatttgat ttgggctcat
    29761 tgaaagagtt tgaaggcgac gatttttgct aaagcccgat aagatgtgaa aaaagcttgt
    29821 cgtatctctt gcaaattctg ctttgcttgt aaaataactc acatcagtat agattttagc
    29881 actgcttgca ttataatttc ccgtacttaa atgcatataa aatttaagtt tatctccttg
    29941 tttgcgtatg acttgagaaa ccttagcgtg gactttaaaa cctgtaatgc cataaataac
    30001 atgagctccg gcattttcta aagcttttgc ccaatgaaga ttgttttctt catcaaagcg
    30061 tgcttttaat tctaccatca cagttacttg ttttccatcg cttgcagcat caattaaagc
    30121 ttgaactata ttggaatttt tttcaactct ataaagtgtc attcttatgg aaattacttc
    30181 aggatctttg cttgcttctt tgataaattt ataaactgga tcaaaacttt caaaaggttg
    30241 tataatgagt atatcttctt tttctacagc atcaaaaata gataaattct catcaaaagg
    30301 tggtaaagtt ttaggcgtgt aaagtgggct taaaagatgc gtaaaggttt tatttcctgc
    30361 gatttgccaa aggctaggga gattgagtaa aatagaatat tcataaacat ctttatgaaa
    30421 aattttcatg tgagtattaa gaaattctac gatttgctca tctgcatctt tttgaatttg
    30481 caatcttaca aaagctcctt ttctgcgaag cttcaagcct tgttctaaaa tcatcataaa
    30541 atcatcagct tcttcctctt ctattaccat atctgcattt ctagtcactc taaatgctgc
    30601 tgaagctaag agtttatagc ctggaaaaat ttcttctgcg tgttgatgga ctatactttc
    30661 tataggaaca taaatatttg cacttacttc ataaaaacga ggtaaaactc ttggaattct
    30721 aatcattcca aattttacaa gttcaggatg cgctttatcg caaattttaa ccgctagtga
    30781 aaaagataag ttgtttaaat gcggaaaagg gtgagtagca tcaacagcta ttggaacaat
    30841 aacaggaaaa atattagaga aaaaatactc atcacatttt tgttttaaat tttcatctaa
    30901 attctcataa tgttttatga aaagattttc tttttctaat tcacttgtga tttcattaaa
    30961 ataacgctcc aaaagttctt tttcttggtg taaatatttg cgtatggctt ttaattgttg
    31021 taacggggtc atttcatcgc tactgcttgc attaactcca gctgaaaaaa gttgttttaa
    31081 gcctgcgacg cgtatcatat aaaattcatc taaattagtg caatatatag ctataaattt
    31141 taatttttct aacaagggta aatttttaga acattggtct aaaacacgag aattaaagcg
    31201 aagccaagaa agttcgcgat tgataaacat atcaggactt gtttgcatta atttttcctt
    31261 ttttagttgt attttatcat ttattttgaa attattgaat aaaagtttta aattttttta
    31321 ggttaattaa gagtaaatat atctttaaaa ttatattaaa ttcatctatg ttagaatcac
    31381 aaaatttatt tctgggaaat tctgtgacat tgttgtttca ttgaagattt taagaaatga
    31441 taattttaag gaggaaaatt ttgaagaaaa cttcgaatct ttttactatt tttcttgttt
    31501 tgctttttgt tttctttgcg gttgggtttt atacttttta taacgctaag ggcacatctt
    31561 atttaagcaa tgcaagtgaa tcttgtaata actgccatat tatgaatgaa gtttataacg
    31621 aatacatggc aggaccacac tctcaaaaag tcaaaggcga accaagagca acttgtgtgg
    31681 attgtcattt gccacataat tttgtagcta agtggatagc taaagcgcaa agtggtttag
    31741 gacatgctta tgcttttact tttaaacttg atgagttgcc tacaaatttg agtgcgactg
    31801 aaaaaagcag aaaaatggtg caagaaaact gcatacgctg tcatgcagat tttgctcaaa
    31861 cagctatcaa tgctacaaca aatccacatg cagacaagtc attaaattgt gcttcttgtc
    31921 ataaagatgt tggacataaa cacggaattt aataaggaga agatgaatga aaaaaaatat
    31981 tttacgctta ggtattgtcg ttttggtttt acttatagcg ggagttttat ggctaaataa
    32041 tgatatcaat caaaaaaaag aagatgaagc aaataaaaat gccattgcag caaatgctga
    32101 tttttctttg cttagcgatg atgatccaaa ttttgaaaaa tggggtaagg tttttccaga
    32161 gcaactaaaa atgtatttaa cggttgaaaa agaagagcct aaggctactg aatttggtgg
    32221 taatttagct tattcaaaat taattcgctt tcctcaatta accatacttt gggcaggata
    32281 tccttttagt cttgatttca atgaagaaag agggcatttt tgggttcaag tagatcaaat
    32341 gaaaacagca agaaacaaca aagattttct taatgcccat ggacttgctg cttttaaagg
    32401 tcaacctgca gcttgtatga attgtcatag tggatggact ccatggctta taaaaaatgt
    32461 tgctaaagga gattttactg cttttaactc tacaaattat tggactatga ttaaaaatat
    32521 cccagctgtt gatggtatag tagaaaattc acctgaacat gcaggcccac atggtggtaa
    32581 aagaatgggt gtaacttgtg cagattgtca caatccaaat gatatgagtt taagacttac
    32641 tcgtccagca gctattaatg ctttagtttc tagaggatat gaaaaagatc cagtacaagg
    32701 cgtaaaagct acaagagaag aaatgagaac tttagtttgc tctcaatgtc atgttgaata
    32761 ctattttaaa ccaacagggg aaaaagtaaa agtaatgggt gaaactattg tagatgatag
    32821 ttctaaaaaa tggtggaatg gaactcagaa aaattatgat gagtatgagt tttggagaga
    32881 tggcaataaa gttaaagaga ttgaaaccga tggtatagtt ttaacttttc cttggagtga
    32941 gtggaaaaaa ggacaaccat ttagaattga aatgctagat gattattatg ataaagttcg
    33001 tggagtattt ggagctgatt ttactcataa attaacagga gcgcaaatta ttaaaattca
    33061 acatccagaa agtgaacttt atagtggcgg tgtgcatgct gcaaatggag taagttgcgt
    33121 ggattgtcat atgccttatg ttagagaagg agctaaaaag gttactcaac acaatatcac
    33181 ttctccttta agagatatta actctgcttg taagtcttgt cataaacaaa gtgaagatta
    33241 tttaaaagct caagtgcttg acatacaaaa cagcgttgca catgatcaaa gaactgcaga
    33301 gtatgcaatt gttagtttga ttatggatac taaaaaatta cgcgatgaac taggcaatat
    33361 ggaaaaattc caaagcgatg gaaaagctga tgcgaaaaaa attagcgaag agctaaaaga
    33421 agttttagaa cttcatcgta aagctcaaat gagagcggat tttgttaatg ctgaaaactc
    33481 aactggtttc cataatcctc gcgaagcttc aagaatgtta ttgcaagctg ttgatatggc
    33541 aagaatggga caaactaaac ttgtagaaat tgcagcggca aatggaatta aagattttaa
    33601 aacttcaaat ttaggttttg aagatattca aaaatttaat ccaggagagc tttattataa
    33661 agtagatgtt aataatcata aagctggaga gcgttactat gcagatgaaa aagatgttaa
    33721 tggcaatcct ccaaaagaac ttttagagca tgataaagag cttgctcctt ataattatca
    33781 agtgattgat aaaaaataat tcttaagccc tataatcata gggctttttc ttttctttgt
    33841 tttaaaaaat ataaactttt tatttaaaat tcacttttgc ttcactttgt tttgtcaaaa
    33901 tatcacaaat tttgataatc aaaaaggagt taaaatgatc aataaaaata aattgtttag
    33961 acaggttcat atctatctta gtttgttctt tttgccttgt gctttgcttt ttgctttaac
    34021 gggtatagcg tatatttttg gtattaatca agatgtgggc ttaaaagttg agcagtatca
    34081 attgtcaaaa gttatagaaa gtggtaaaga aagagaagct ttaatagagt atttaaaaac
    34141 aaatggttta aaagtaccat ctaatacaaa tataattaaa agtaaagata aaggtataac
    34201 aataggtgga actcattata gtgctaatat aactcaaaat tctactaatg aatacaatat
    34261 taccttaaaa acaagatctt tacttggaga tatgattatg cttcataaag ataagggtgc
    34321 ttggtatttt tctgtgctta gcgtaggttt tggtattact ttatttatgc tttatatttc
    34381 agggcttatg attactttgt ttgcaaataa aaaagataga agtaaacaat ttgcagttct
    34441 tggagtaggg gttgttgtaa ctttgctttt ggcttatctt agcctttgat ttttcctagc
    34501 tttttaagct aggtattatt tatttttttg tataatcata ctttacttta ttggacagat
    34561 gggtgagtgg ctgaaaccac acccctgcta agggtgcaga tcttaacggg tctcgagggt
    34621 tcaaatccct ctctgtccgc cactaaaact ttcttgaaaa tcccaagtat tttattaagt
    34681 atcgaagcaa gagactagcc cttgcgaagt tatattattt tacagcgttt ttgatttcta
    34741 aaatcatagt ttttaaagac tctagtccat ttccacttgc taaataccag tattctggat
    34801 caagatagat gatttttttg ttttgcgctg ctttggtttt agcgacaagt gcattatcga
    34861 gtatgccttg agcacgttct ttgttgccta agatgacatt tctatcaaca acaaaaatat
    34921 aatcaggatt tttttctaat ataaattcag aattgatact ttttccgtgt gtgcctactt
    34981 ttatattctc atctaccgcg ttaatcccta aaacatcgtg aataatccca aagcgagatt
    35041 gaggaccaaa ggctgaaatt ttgttagaat ttgtaagaat gataagagct tttttatctt
    35101 catcaactat acttttggct ttttcaattt catttttaat atctgaaatt ttttctaaag
    35161 cttctttttc taaaccataa agttttgcaa cgcttaagac attgttttca aaagagctta
    35221 aaaaatttgc attatcaaga cctacaaata aagttggagc tatttctttt aatttgtcat
    35281 aaaatttact ttggcgtcca gaaatgatga taagatcagg ttttaaagca ttaatggctt
    35341 caaaatcaac ttgttgtact ccacctacac taggtttgtt tttaaattgt tgtaggtatt
    35401 ttggtaaatt tttagcagga acgccaacga ctttatcatt taattttaaa gcatcaaaag
    35461 tatctaaaat tccaagatct aagatcacta ccttagaagg atttttaggg attttatttt
    35521 ctcctagact atccttcact aaaaaactat caccctcatc gctcatacta ataggcaaaa
    35581 ctttcaccgt agcagtgttg gtttttgttg tagaacttgc gttgttttca tttgagtttg
    35641 aattacaagc tgttaagatt agacttaaaa aaaatgcaaa aaatgcaaaa actaaagatt
    35701 ttttcatatt ttctcctttt taaaaataaa tacaaatttt cttaccatta atttgactta
    35761 cgggtatatc catatcataa atttgtttta aattttcttg attgatgatt tcatcttttg
    35821 agccttgttt taaaagcttt ccatctttta aggctatgat ttcatcagaa taaatcgaag
    35881 caaaattaat atcatgtaat acaacagcta tacttttgtt aaagtctttg actaaatttt
    35941 tcattagttg catgatttgt acgctatgct tcatatcaag attgttcaaa ggttcatcaa
    36001 acattataaa ttcagtatcc tgagcgatga tcatggctat aaaagctctt tgcttttgtc
    36061 ccccgcttaa tgtatctaaa aattcatttc ttaagttgct aagttccatg tattctaaag
    36121 cttcattgat tttgatttta tcgtttgtat taagtcttcc ttgagaatgc ggaaaacgcc
    36181 caaaagcgac taattcttca acttttaatc ttaaattgat attgttttgt tgtttgagaa
    36241 tggaaatttt ttgtgctaag atttgctctt tataattttt taaattcatt ccatcgatat
    36301 aaatttctcc actactaggt tttatcaaac gacttgctag agctaaaaga gtggattttc
    36361 cagcgccatt ggctcctatt atagaagtga ttttgccttt atgaaaatca aggctaagat
    36421 ctgaaataat gactttatta tcataaaatt tggtgatatt ttttagttta atcataattt
    36481 attacccttt aatacaagat agataaaata tatcccacct aagaaattaa taaccacgct
    36541 tatagtggca ttataatcaa aaactctaga gacaaaaaac acccctccaa gcaaagccaa
    36601 aatactaata agtatacaag cgcttagcaa aatactatgc tttgcagttt taaatagctc
    36661 ataagtgata tttactacta aaagtcctaa aaaggttata ggacctacaa gtgcggtgct
    36721 aatagaagtt aaaatagcta tgataatcat caattgtttt gaaatttttt gataatttat
    36781 ccctaaattt atcgctaaat ctttgcctaa atttaaagga tctaaaaatt tcatatagcg
    36841 aaaaatccat ataaaactta aaaagctaat aatataagca agaattaaaa catcaaaagc
    36901 aatattatca aaactagcaa acattcttcc ttgtattacc atgaattcat cagggtcgat
    36961 tagtacttca aaaaaagagc ttaaagtgct aaaaagtgtt ccaaaaacta aacctaaaag
    37021 catgataaga taaatacttc tatcactact aaataaaatc ttataaagtc ctagtgaaaa
    37081 aaccaccata caaactagag tgattaaaaa attgatatcg tttttataaa cacttaaatt
    37141 agccgcacca aaagaaaaga taagagcact ttgaagcaac atatataaag aatctaatcc
    37201 tatgatagca ggggttagaa ttttgttatt gcataaagtt tgaaaaatca ctgttgaaac
    37261 agcgatacaa atagctacta taataatagc cgcaatttgt aaaaaacgac tttttaaggc
    37321 atactcatca aagccattta aacccacaaa tataaaaatc cctatcatgt taagtgttaa
    37381 aaagcttaaa attagcattt ttttacgcat aaactttcct ttttagtaaa agaaagataa
    37441 agattaaaga ccctaaaaca cctgtagtga tacttaaagg catttcaaaa ggaaagataa
    37501 caagtcttga aatgatatcg caaacaagta aaaacaaagc tccacaaagt gctatataga
    37561 taagattttt tctaagatta tcacctagat aaagagctac taaatttggg ataattagcc
    37621 ctaaaaaagg gataatccca acgcttacaa tcactaagct agtgataatg cttacaatca
    37681 ttaagcctaa aaataatata ccattataag aaattccaag atttaaagct atatcttcac
    37741 ccatgccaac tatggtgatt ttatgagcta aaaaataagc aagtataaaa agtggtaaag
    37801 aaatgtagag caattcataa tttccctgca taacatttgc catactgcct tgtagccaac
    37861 cttggatatt ttgtatataa tttaaagcat aggcaaaaaa agtggttata gcactaataa
    37921 tacctccaaa catcaagcct atcaaaggta caaaaatcac atctttgagt ttgatttttc
    37981 ttaaaatttg gataaatata aaagaaccca aaagtgcaaa tatagaagca atgatagctt
    38041 gagtgaaaaa agacgctcca gtaaaaaata ttaaagaaat aagtatgcca aatttagcac
    38101 aatccatggt ccctgctgta gttggggaaa cgaatttatt ttgcgtgagt tgttgcatga
    38161 taagcccaca tatactaaga ctcattcctg tgagtaaaat cgctataagt ctaggaattc
    38221 ttgtgagagt tatgatttct agttgagtgg agttaagatt aagaatatct tttacattga
    38281 tactgataac tcctataaat aaacttatca ttccaaagaa taaaagtaaa gctataagca
    38341 cttttaaact caatatatgc ttaaaaaaca aatctttcct tatagtaata ataattatca
    38401 aaaatgaaat tgtaatgaaa tttgttttaa gaaatgataa aactataaag gatattttag
    38461 taagaaatca aaaatccagt ggaaagtctt tgcaagtgtt tgttatagtc tataaggctt
    38521 tctccatagc cattaaagta ttgtaaatac caataaattc cgttattaaa aatatcatat
    38581 cctagatcaa cttgtatagc gcctttgtta ttgtggaatt taagattatt tcttagcata
    38641 agattgataa aataatcatc acctaaatac gctaaattca catcaaaatt tcccatataa
    38701 tgcaagatgg caggattatc atcatctttt ttgttttcag gaattctata ccaaaggcgt
    38761 ggaacaaata aaaatttatt atataaaata gcagtagata cataaattct attccatgag
    38821 cgagattgta aattctcatc tcccttgcca ttgctttcat gcaatatacc tacgcgtaga
    38881 ttgttaaaaa attcataatc tttaagatat aaaggaagat ctataaaaaa ttctggttga
    38941 tagttggttt ctctaaaagg agaagaatgc tcataaattt gccaccaaga agtttgagta
    39001 taggctatat aatatttttc atctagtcct agtaaatttt caaaaagtct ttttttaaca
    39061 ctaagttgga atttcgcctc actcttatta ttatttactc ctaaagaatt aaaactataa
    39121 gcaaaaggta aaaaataatt catcttataa gagctaatgc caaggggatt aaagctttca
    39181 ttttcaccaa gataattagc caaagctaag cgagaaaagt cttgtttttc ttcttttttt
    39241 atagtgatag aattttgcgt ttgtgttgct tgacttgagt tattttgttc ttgagaaatc
    39301 aaaacagatg aattttttaa agcgagtttt ttgtaaattt ccatagcttt tttataatcg
    39361 ccttgttttt catactctaa agcttgttgt aaatcactag cccatataaa aacgcataag
    39421 cttaaaaata aagcaatttt tctcatttta acttgctttt aaatttttca tattcttcat
    39481 aaaaattaag atttaaaaaa gcatcttcat cttcaaattc tacaaatttg gttttaatct
    39541 cagaaaataa aagtcctatt ttttgttcat ttttttctaa gaaattttta caagtttgag
    39601 ctaaagagct gtgataaaag ccacataagg gatgtttatg caaaggggtt tttgctatga
    39661 ttattttata gttttgttct aaaaaaggaa gcatttttaa aagttcattt tcacctactt
    39721 taggactatc tacacttaaa acaaaaacaa attcattttt aaaatttgaa agtatagagt
    39781 aaagcgcaag cataggagag taaacttcaa attctaaaga atcttttatc aagctaaaat
    39841 ggttttcaaa tttgtcttct ttcgcactca catagacatt tttaaaaatt ttagaaaatt
    39901 tatctacttg aaattgagtt aaattttgat ttttaagaat caatttgctt ttatcttgtc
    39961 ccatacggct agatttacca ccacataaaa tcacgcaatt tagctcatta agctgcacaa
    40021 atttcctttt taatgtaatt ctaccacaaa attcgccaaa atattttata atttctttta
    40081 tgaaatacac agaactttta caattacaaa cttttttttc tcggtttaaa aaaattgatt
    40141 ttatcaagcg tatcaatgac aatattttgg aattaagctt tgatagagaa agatttattt
    40201 ttgatcttac tcgtgcaatg agtgcgattt atacagctaa atttaatgca aaaaattata
    40261 atgcaccttt tgattttatg cttaaaaagt attttagcaa tgcttttata aaggaagtta
    40321 aagtccttga aggcaatcgt attttatgtt ttagtgtaaa agctaataag gcttataaaa
    40381 gctatgagag caaaatttat tttgaattta cgggtaaaaa taccaatgtt attcttacag
    40441 atgaaaaaga tttgatcata gaggctttaa gacacattga taaaagttat cgtgttgtaa
    40501 aacctaatgt gattttagag tctttaaagc cttataaaat ggatgaaaat tttgaggaaa
    40561 ttaaagactt tgcagattat ttttctcgca aatttacaag catttatgag agtaaaatca
    40621 aacaaataaa aaatttaaaa cttgcacaag tggataaaaa aatacaaaat ttacaagaac
    40681 ttttttctag tttagatgaa gaaaattctt tactcttaaa agctttagaa tacagaaaaa
    40741 gggctgatgt attgtttgca aatttgagtg ttttaaaaga ttatgaaagg gaatttaagc
    40801 ttgatgattt tgaaggcaaa gagcttgaat ttaagcttga atttaatcct aagcaaagcg
    40861 ctaatttata ttataaaaat gctaaaaaat tagaacaaaa agctaaaaat ttaaacatac
    40921 aaagacaaaa tttaaaagaa aagttagatt ttaccttgag tttgaaagaa ttattgcttc
    40981 aagctaagag tgagatagag cttgaaattt tactacctaa aaaaaatagc aaaaaaaatc
    41041 aagatcataa acaagaagat cttgtcgcaa atttttattt taacgagttt aaaatttgcg
    41101 tgggtaaaaa tgaaaaaggc aatgaatttt tacttaaaaa tgctaaaaaa gatgatttgt
    41161 ggcttcatgt aagggatatt cctagcgcac atactttgat tgtatcaaac aagcaaaaaa
    41221 tcagcctcga tgtgatagaa tttgctgcaa ggctttgtgt aagcttttct aagttaaaga
    41281 aaggttcgta ttgggtcgat tatactttaa aaaattttgt taaggttcag caaaaggcgt
    41341 ttgtaaatta tacaaatttt aaaagtatta atatcacaaa ggattaaaat gccagttagc
    41401 cctttaggaa atatcaatta tataaatcag aatatggctt atccagctac acaagcaagc
    41461 aatgagcttg caaaagaagg ttttgcagct acgctaaata tggctgaatt taatgaaaaa
    41521 gaaaaaactt taaacaagct tgagaaagtc aatgagactc atgaaatcaa agaagagatc
    41581 aaagaaaaag ccgaacaaga agaaaaaaag aaaaaacaca atcaagaagc taaaaccagt
    41641 gatgatgaga aaaatgaaga agatgagtct aaagatccaa attttaaaga cgcacaaagc
    41701 attcatcgct tagatattag tatataagga aaaatatgtt taatacaact agaattattt
    41761 cagctcttgt gatgataggg gctattatta ttatcgcgtt gattgatcaa ttttttatca
    41821 attttatcgt ttttgcggtt ttattgtatc tatcttttag tgaagcaaaa aaactttttg
    41881 ctttagaaaa tatctctatt atccctttgg ctatagcttt tattttggga agtttatcgc
    41941 ataaagcttt gctttttggg attttagttt tgttattagt cgttggatat ttggtttata
    42001 aaaaggcttc cttaaaacca gctcttattt atatttatcc tagtttgcct attttagcac
    42061 tttggcaagt gtatttagat cagggtatgt ttgcactttt ttggcttatc attatcgttg
    42121 cagcttgtga tagtggggcg tattttatcg gaaaacttat gggtaaaact cctttttctc
    42181 caacaagtcc aaacaaaacc ttagaaggtg ttataggtgg cttgatttgt gcgagtgtta
    42241 ttggaactat tttgggagtt tttgtttata gtttttggct ttctttgctt tgttcgtttt
    42301 ttgtagcgat ttttgcagtg attggagatt tgcttgagag ttattttaaa agagaagcag
    42361 gtgtaaaaga tagtggagat cttatccctg gtcatggggg cgtgcttgat aggatcgatg
    42421 cggtgatcat tgctgctttt gtgatggttg ctcttttatg atactttttg gaagtacggg
    42481 cagtatagga gtaaatgctc ttaaacttgc tgctttaaaa aacattccca tttctgcttt
    42541 agcttgtggg gataacatcg ctcttttaaa tgagcaaatc gcaaggttta aacccaaatt
    42601 tgtttccata aaagattcaa aaaataagca tttagttaaa cacgatagag tttttatagg
    42661 gcaagaaggt ttagagcaaa ttttaacaga atgtcaagat aagcttttac tcaatgccat
    42721 tgtaggtttt gcaggactta aaagcacttt aaaggctaaa gagcttggca aaaacatagc
    42781 tttagctaac aaagaaagtc ttgtagtagc tgggagtttt ttgaaagggg ctaaattttt
    42841 acccgttgat agtgagcatg cagctttaaa atttttactc gaaggtaaaa aaaatatagc
    42901 aaaactttat atcacagcaa gtggtggagc tttttatagg tataaaatca aagatttaaa
    42961 tcaagtcagt gtcaaagatg ctttaaaaca tcctaattgg aacatgggag caaagatcac
    43021 tatagatagt gcgactatgg caaataagct ttttgagatt atagaggctt atcatttata
    43081 tgattttaaa gaaattgatg ctttaataga accaagatct ttagtgcatg caatgtgtga
    43141 atttaaaaat ggagctagca cggcgtattt ttcaaaagca gatatgaaac tagctatttc
    43201 agatgctata tttgaaaaac aagatacgcc tattttagag gctgttgatt ttagcaaaat
    43261 gcctgcttta aaatttcatc caatcagcac aaaaaaatat cctattttta agcttaaaaa
    43321 tacattttta aaagagccaa atttaggtgt tatcatcaat gctgctaatg aagttggtgt
    43381 ttataatttt ttagaaaata aaagtggatt tttagacatt gctaaatgca tttttaaagc
    43441 ccttgatcat tttggagtgc ctaaaatttc aagcatagaa gaagtttttg agtatgattt
    43501 taaaacaaga gagtatttaa ggagttaaaa tgaaattttt tttaacaatt ttatttttta
    43561 taacaagcat ttttgcttta gagctagact ttagcgtagg agaaaatgga aaaagtctag
    43621 atgataataa tacagtttta atttttggtg gaattcaagg cgatgagcct ggtggatttc
    43681 atgcggcaag tttgcttttg agtgattata atatcactaa gggtaagatt atagtggctc
    43741 caaatttagc ttttgatagc attatcaagc gttctcgtgg gaataatggg gatttaaacc
    43801 gtaaatttgc aagcattagc ccaaaagatc ctgattataa aaccgttcaa cgcattaaag
    43861 agcttatttt acttcctgaa gttagtatgg tgatcaatct tcacgatggt tggggttttt
    43921 ataaacccac ttatatcgat gcgatgcaaa atcctaagcg ttggggaaat tcaagcgtga
    43981 ttgatacaag cgaaatcaat gcaagcaaat accctgatct tgaaaatatc gccactcaaa
    44041 ccgtaaatag tgtcaattct tcgcttgctg atccaaagca tgcttatcat cttaaaaaca
    44101 ccaaaaccca agagcttggc gatacggaaa tgcttaaagc tttaacttat tttgtgattt
    44161 caaatcacaa agccgctttt gcaaatgaag cgagtaaaaa tctgcctgta aatttaagag
    44221 cttattatca tcttttggca attgaaaatt atttaaaaac tgcaggaatt gaatttagca
    44281 gagatttcga actcactcca caaggagttg ataaagccat aaataaagag cttgaagtaa
    44341 aactttttga tgatagaatt ttactttctt taaaaaatcc aagaaaggtt atcaactatg
    44401 tgccttttcc ggtaaataaa gagttaaatt ataacacaag caatgaactt acggctgtta
    44461 tcgcagaagg aaattctttt tatatccaat atggcaatcg ttttcaaaca agattatatc
    44521 ctgagtattt agaatttagc gatgctttta atgaagtaac ttttcaagtt gatggcaatg
    44581 aaaccacagt tccttttgga accaaggtaa aagtaaaaga gaattttctt attccaaaga
    44641 tagctaatgt gcgcgtaaat atcataggct ttgatcactc aaaagatgaa agtggtattt
    44701 tagttcataa aaaaaatatg caaacacaat actctttaga catggcaggt aaaatttata
    44761 gagcggaatt ttatgagtta agaggtgcaa atttgcaaca acttttagag gcaaatatca
    44821 atagcaagtt gatcaaaaac gctaaaaatt tggatttaaa tactcttaaa atggcaagat
    44881 caaaagataa attcttaggt tctattttag tggaatttga atgaaaaatc ttatcctagc
    44941 tatagaaagt tcttgtgatg atagttctat agctatcatt gataaaaaca ccttagaatg
    45001 taaatttcat aaaaaaattt cccaagaatt agatcatagt atctatggag gagtggtgcc
    45061 tgaacttgct gcaaggcttc atagcgaggc tttaccaaag atacttacgc aatgcaaaga
    45121 gcattttaaa aatctttgtg ccatagctgt gacaaatgag cctggactta gtgtttcttt
    45181 gctcagtgga atttctatgg caaaaacctt agcaagtgct ctaaatttac ctttaatccc
    45241 tataaatcat cttaaaggtc atatttatag tctttttttg gaagaaaaaa tttctttaga
    45301 taggggaatt ttgcttgtca gtggtgggca cactatggtg ctttatctta aagatgatgc
    45361 aaacttagag cttttagcaa gcacaaatga tgatagcttt ggagaaagtt ttgataaagt
    45421 ggctaaaatg atgaatttag gttatcctgg tggggttatc atagaaaatt tagcaaaaaa
    45481 tgccaaactt aaaaatatct cttttaacac acctttaaag cattctaaag aactcgcttt
    45541 cagtttttca gggcttaaaa atgcagtgcg tttagaaatt ttaaagcata aaaatttaag
    45601 cgatgatata aaagcagaaa tagcttatgc ctttgaaaat acagcttgtg atcatatcat
    45661 ggataaatta gaaaaaattt ttaatcttta taaatttaaa aattttggcg ttgtaggtgg
    45721 agcgagtgca aatcttaact tgcgttcgcg tttgcaaaat ttatgtcaaa aatataatgc
    45781 aaatttaaaa ctagctcctt taaaattctg ctctgataat gctttgatga tagcaagagc
    45841 cgcagttgat gcttatgaaa aaaaggaatt tgtaagtgta gaagaagata ttttaagccc
    45901 taaaaataaa aatttttcaa ggatatagat gagaaaagct tttaccatat tagaacttgt
    45961 ttttgtgatt gttatcttag gaattttagc cgctattgct ttaccaaaaa tgagttcaag
    46021 caaggatgaa gcggagatta gcaagtcttt aaacaacctt aaaactttga tcaatgacat
    46081 aagcatttat actttaaaaa atgatcattt aagctctata aaaacgatga gtaatgtaag
    46141 tggggttgaa aatgtcgatc ttggcaattt caatggcaca aaagaagtaa attttcgcgt
    46201 aggcgatgat aaagaatgct taaaacttgt ttttatagat agagcggatt ttatactcat
    46261 gggaatttca agtaatgaag caagcaaaaa tgctatcatc aacgcagcca atcaaagcca
    46321 tgaagattta gaaaatatag actttacaag ctcttctagc aataaagctt gtgtgatctt
    46381 aagtaagaat gaaaatttta aaaacctagc aagtaaaact tatcttttaa taggggaaat
    46441 gtaatgatag tgagcaaagc ttatgagatt gactcttgtg atgatgtaga gcttggtata
    46501 aaaagagaat caaagcttga atttaagctt tggtatgatg atgaaaaaac acctgaagcc
    46561 ttggtgtttg tggtgcaagg tatgggtgat gatatatcat cgatccaata tgttggtgat
    46621 tatatggtaa ggcaatttaa tactgctgta gttggagtaa attatcattg tattggcaat
    46681 cgtcctcaaa ctggatcaac tttttattta gatgatatag acaagcttat tttaaaagca
    46741 agttgtgaag ctgcggatat caagcttcct tatgatgttg ataaaattca agactataaa
    46801 caaatgagtg aaatttttca ttttattaac tatagcattg tccaaggcaa gcaaaaaggt
    46861 aattttacac caaattattt tttaaatttg catgtgagtt tgcaaccgac aaaaaacgag
    46921 tatcaaaatt ttgggatcat gcaagctcaa gatcttttaa atgtcacact ttaccttaaa
    46981 aaacatgctc cttttgatac tatggggggg ggtatacccg ttattatgat aggtagttct
    47041 catgggggat atttagcaca tttggcggct aagattgcac cttggttagt agatggagtg
    47101 ttggataatt ctgcatacgc gaagttttta tggagagttg taggttttgg aaaggaaata
    47161 gattttatgc agtgtagtga attttctact tttgattttt tccatcatat taaaacacat
    47221 tgttcgacaa aaactttttg gacaagtaat tcttcatcgc ctcgtttttt ttctcccgca
    47281 agaagaaaaa ttcgaaatct tttagaggaa gatcatcttt tagaacaatc aaaatgttta
    47341 aaaacttgct ttataagtta tcattcgtta tatgatgagt atgtttcttt aaaagaaaaa
    47401 actatgttct atgaagagct tgagaaactt ggttttgatg taactttgtg ttctgttact
    47461 aaagaatctc aagttgatgg aaaatttatt aaaaacttaa atcatggcat gggaattccg
    47521 gtaaaacttt tgattaagaa agaacttcct ttaatgctag aaaaaataaa acaaaattca
    47581 aaaaaagatt ataaagaaaa atgtatctct tatccttgcg aggatttgtt gtatcaattt
    47641 agcgaaaaag atgacaaaat gtcactaaaa atagataaaa tttaaggaaa gctaatgacc
    47701 ctactagaaa aaaacataca agctttatta agtgg
//
LOCUS       DAPIWJ010000003        37138 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.003, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000003 DAPIWJ010000000
VERSION     DAPIWJ010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 37138)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37138)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37138
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.003"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            46..1574
                     /locus_tag="RJ259_000102"
                     /pseudo
     CDS             46..1574
                     /locus_tag="RJ259_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516966.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
     gene            1745..3298
                     /locus_tag="RJ259_000103"
     CDS             1745..3298
                     /locus_tag="RJ259_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HDV7365851.1"
                     /translation="MSKNVKNLDTSFFGHPKPLLSLSLTELWERFSFYGIRPLLYLFM
                     IASFEKSGMNLKPEEASAIMGIFASCLYLAALPGGWLADNYLGQKRAILLGALTIAFG
                     HLCIAFSYFNNKMIFVGMVFLVIGTGLFKTCASVMVGMLYKKNDARRDSGFTLFYMCF
                     NFGAFVAPLICGFLQKEYGWHFGFGAGGIGMLLAVIIFYLKTMPDLKEFDEKVGIDAT
                     WDRPSKKSKNAFYIIIVSGIVLLGAIFLILGGFIKLDAQVINKNIILTILACAGIYFL
                     YLFAFTSLKIEEKRNLIIFIVLFLAAALFWSVYEQQYTSFNFFAEKLTDKTILNYEIP
                     TIWFQSLGGLFVILFAPFSAFIWTICAKNNKEISSIIKFALGLLGAALAFLIMALASN
                     HAISLNGDANILRENLENSSQIILVSPWWLVSSFLLMVLGELCLSPVGLSIMTKIAPN
                     LIKSQVMGLWFVASALGNALAGFIGGKASEENIAYLPNLFYQCMWILLGAVIILLILK
                     KPINKILKN"
     gene            3314..5104
                     /locus_tag="RJ259_000104"
     CDS             3314..5104
                     /locus_tag="RJ259_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HDV7365852.1"
                     /translation="MSIYKQRVLELRRLMKENNIDAYLILSADPHLSEYLPEYYKNRV
                     FISGFKGSVGTVLITQEEGFLWVDGRYWLQAQKELEGSGILLQKQDAKNTFTKWLEKN
                     LSEDQILGIDFALLPLSLQKDLKINCKANLKHIDLISPLWKDRPTLPQEKIYEHELEY
                     CSYSRKEKLALVRQKMKNLNVTSHLISSLDDIAWLTNLRGNDVNYNPVFLSHLLILED
                     KALLFVDQKKVNSELEKKLNLDGFWLKNYDEIIMELEKLANTNLLIEPSKMTALLINS
                     LDKSVKIIQEINPSTHLKAAKNTKEIAHIQDAMIEDGVALCKFFAWLEEAIENKELIS
                     ELDIDAKASEFRAQSKYYISDSFATIAGFNENAAYPHYKATKESFAYLKKDGLLLIDS
                     GGQYKNGTTDITRVVPIGKANAEQIHDYTLVLKAHIAISSAIFPKDIAMPLLDAITRA
                     PLWKEQIDYIHGTGHGVGYFLNVHEGPQVLSYLSPVLEKTKAKEGMLTSIEPGIYKVG
                     KWGIRLENLVIHTKVENPKNKDFGEFLYFKPVTLCPFEISCIDTKMLDEKEKEWLNNY
                     HKEVFEKLSPKLGDYPKALVWLEKRTKAIF"
     gene            complement(5224..7029)
                     /gene="mrdA"
                     /locus_tag="RJ259_000105"
     CDS             complement(5224..7029)
                     /gene="mrdA"
                     /locus_tag="RJ259_000105"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HDV7365853.1"
                     /translation="MRMRLVVGFILLFFIFLLSRVYYLSIKSNVYYEELAKQNAIKTE
                     FLPPVRGQITDRNGTLLAINDLGFSISIKPYLSIKKSNKGILDKELSELTNLFPDLNA
                     SKLAEIYKRNDSYYNQDFIKVVDFIPYDEIIPHYSELNLNKTIKIDPVVKRKYPFGKL
                     ASHIIGYVGKANLQDVQENEIAKLSNYTGKSGIERYYNDILQGEKGTRVYKVNALNQE
                     VEQLSYTPAMSNDIELTIDIELQSYLTSLFEGNAGAAIIMNVNDGSILAAGSFPEYDL
                     NPFVTGISFKDWDELSNSLDHPFTNKLINGYYPPGSVVKMGVGLSFLNSKNISPSTQY
                     VCNGSIELGGRFFRCWNRSGHGPVDLKHAIKYSCDVYFYNGSLQVGIDQISETLSRIG
                     FGAKTGVDLPSEFVGTLPSKEWKMQRYRQSWFQGDTLNTAIGQGNFLATPMQIARYTA
                     QIAKGGEVIPHFLKSIENNNTTIENQMDENKKEIFTLFEKSQLPYIRDAMYAVANEQG
                     GTSYRYLHNLDVKVAAKTGTAQVVGFSQTDKNRVDEKQFEYYTRSHAWLTSYAPYSKP
                     KYVVTVLLEHGGRNITSGATVAKIYQKMIELGYFK"
     gene            complement(7030..7524)
                     /locus_tag="RJ259_000106"
     CDS             complement(7030..7524)
                     /locus_tag="RJ259_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7365854.1"
                     /translation="MRRNLSAYKAKFNGAYVFLGFFFLIYQILGSTFIYAPLLYGIFF
                     CYMFCLLEERERTFSKLDFRWYFSLFFLFFTDITYNFFIFSSWLAFFIFYYLCADWIK
                     TNLKIGKFIPVVFVLCAYGIILFLDMILSYIGDEKIKILGWAYIVSVFIECCLAYVFF
                     KGKI"
     gene            complement(7521..8117)
                     /locus_tag="RJ259_000107"
     CDS             complement(7521..8117)
                     /locus_tag="RJ259_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HDV7365855.1"
                     /translation="MIISAKFITSLVKFDENLSSNFSEVAFLGRSNVGKSSLINSLCK
                     QKNLAKSSATPGKTQLINFFEVTCKRNEEKFNINFIDLPGFGYAKVSKNLKEIWNQNL
                     DEFLKLRTSIKLFIHLIDSRHTHLEIDVNLNDYLKRFLRPDQKILKVFTKCDKLNQSE
                     KAKLKNEFKDSILVSNLNKFGLDSLEDIIINQTLGLDK"
     gene            complement(8114..8575)
                     /locus_tag="RJ259_000108"
     CDS             complement(8114..8575)
                     /locus_tag="RJ259_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HDV7365856.1"
                     /translation="MVARQIILLLVCVSVTWATQIEVKALNFYSDENKGESILSGNVE
                     VIRGDDILNSEKLIIYTDKNRKPIRYEAMQNARFKIVLKGKTYKGSGDKFIYNVIKDT
                     YEINGHAYINELGSNQKLFGDKIIVDRKANIYRVESKDQKPARFVFDLKDK"
     gene            complement(8557..9072)
                     /locus_tag="RJ259_000109"
     CDS             complement(8557..9072)
                     /locus_tag="RJ259_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7365857.1"
                     /translation="MAIKIFGILIALFTITFTILSLQDPYSLNLQTNALNFKNIEAKN
                     LKAYESNTSIIKAYYKANSWVRYADRDEFNDFITLNLDFNLSANRLEFFNKDMSKVLF
                     EGNVTYIGSNNVKIISQEVEYQPKDKILHTNTNFKALINGSIINGNTLNYDVKNKILN
                     IQGVNAWLQDK"
     gene            complement(9063..9551)
                     /locus_tag="RJ259_000110"
     CDS             complement(9063..9551)
                     /locus_tag="RJ259_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HDV7365858.1"
                     /translation="MTELIFLDVDGCLTDGKIIYTSNGEFIKEFDVKDGAAIEAWLKL
                     GKKIAIITGRNCPCVEKRAKDLKIKILYQGIKDKLACAKEILQKLNLDFSQCAAIGDY
                     FNDKALLESVGLSFKPKDGHKDLNVDIVLSKKGGKAAVAQMIEILVEKNHLEEEWNKL
                     WL"
     gene            complement(9557..10384)
                     /locus_tag="RJ259_000111"
     CDS             complement(9557..10384)
                     /locus_tag="RJ259_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HDV7365859.1"
                     /translation="MQIKTITLKLSAVSLGALFFSGCLGTSFFSSLDNAQVYYPSNDF
                     KSSPSSSGTKGTMKPYTINGKTYYPTVVAVGETADGIASWYGPGFHGKKTSNGETYNQ
                     NALTAAHKTLPMNTILKVTNLNNNRQVTVRVNDRGPFVNNRIIDLSKGAASQIDMIAS
                     GTAPVRLEVIGFGSSNSGNNIVHSNVNYGNSGEIANNGQIYEGGNFMVQIGAFKNPAG
                     AQTIAARYKTYRTYSSTIRTSSVDGLNRVFLTGFRSEDEARDFAASGAFAGAFVVRE"
     gene            complement(10344..11462)
                     /locus_tag="RJ259_000112"
     CDS             complement(10344..11462)
                     /locus_tag="RJ259_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HDV7365860.1"
                     /translation="MKKILLCFLICFNFLFAQINTPEFYERQMNVLRNLDINPSFISD
                     LIFVQTQQDIKSKHAQTLIDSMQNFSKVTPMIRKILAQQEVPDEILYLAMVESGLKTH
                     SVSNAKAVGVWQFMQPTARNLGLRIDAYVDERRDPVKSTYAATNYLKELKEEFGKWYL
                     ALLAYNCGNGKLRQAIKQAGSDDLSVLLNPDKKYLSLETRNFIRKILTLAFLANDRDF
                     LLDKDASLMNYALSNEFAKVDVPSSASLKEIAKNLNMDLATFKKYNPQFKHNFTPPGK
                     GYYMYIPLNKVAFFDKNFKAEKLAKVDTTIPMTRTYTVKSGDSLYKIAKNYNISVDEI
                     REFNKIAKNHLSINQKLIIPIKENKNANKNNYTKVVSR"
     gene            complement(11462..12277)
                     /locus_tag="RJ259_000113"
     CDS             complement(11462..12277)
                     /locus_tag="RJ259_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HDV7365861.1"
                     /translation="MFLNLDFQDGLRIVDTHCHLDSEAFKDDLDETLNRAFKNGIEKI
                     IIPGADIKDLPYAATIAHKYKNIFFAAGVHPYEIDNYDEKILRQYLCDEKCVAVGECG
                     LDYFRFKSDLAEEIQKEKENQKKIFIAQLELAIEFKKPVIIHSREANHDTYEILHGYS
                     KDLVGGVLHCFNASEHLLTLFEEGFYFGIGGVLTFKNAKKLVEILPKIPKDKLLLETD
                     APYLTPEPYRGKRNEPLLTQFVVNKMCEVLNLSRKELLEICFNNSEKLFFKGY"
     gene            complement(12268..13512)
                     /gene="cbrR"
                     /locus_tag="RJ259_000114"
     CDS             complement(12268..13512)
                     /gene="cbrR"
                     /locus_tag="RJ259_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile resistance response regulator CbrR"
                     /protein_id="HDV7365862.1"
                     /translation="MNKKILIIDDNKMLGKLLAKKIQMTLDYEVDIAFGFAEAKELMN
                     NDYFLAFVDLCLPDAPNGEVVDYVIEKKIPAIVLTASGDKATKEKFMDKDILDYIFKE
                     SETCIDEIISSIVKLNQYAKTKVILAMSKLPERNEIKKILTQRQFNVLAAAHGEEAMS
                     YLNDNNDVKLIIADVNMPVISGFELLTQVRERFSDDELGVILLGDHNDSFEANSFKNG
                     VNEYLFKPLSKESFNCRLDRCLSYMDDKKFLSTYNVLDPVSGVKNYNALIDGIDDYFN
                     EIATKDEEFAFAFLDIDNLQMINDEYGREVGDEVIKICANEIVNETKGRDLVGRYSAE
                     KICILLKNISQERAIKIFSRIRVNIKKAGVLVNLDEVFFTASIGVVFGKSGDKIDSLA
                     DKASKILSQAKDNGKDRVEVCS"
     gene            complement(13618..15141)
                     /locus_tag="RJ259_000115"
     CDS             complement(13618..15141)
                     /locus_tag="RJ259_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7365863.1"
                     /translation="MINRIFMKENLGFKKAELEISKGLTVFTGLSGAGKSVLFKGILS
                     AFSLSESEAKIVEIELDDKLDLESFGIESEEENVFKLLKEKNTKYFINNQSIAKKSLQ
                     NLSKTFIKYLSAKENNEFGNEKFLNLLDALEMQENTNFVSFLEDFKKDFNAYSQISNE
                     INAILEEEKKVEELKELARAQIEKISSINPKIGEYEELLILKKKLSKKDKLEEAWSKA
                     ERIFELEKVVIEALNLSEVDASFFSECLNELRVICENQKMEDLDFDVEALLDRIENLS
                     YLIKRYESIENALEVLKQKKYELEHYENLSFEKKELEKKFQELKQKLEEKAQILTQTR
                     KKNLKKLEKCLNNYLKDLYMKDASLTLKENEKISILGKDEIMLDINLAHLKNLSSGEL
                     NRLRLAFIATECNILNTGKGILFLDEIDANLSGKEAMSIAKVLEELSKFYQIFAISHL
                     PQLSSKAHNHFLVEKNGEESKVKKLDQEERIKELARMVSGELVSDEAIEFAKTLFKN"
     gene            complement(15141..16001)
                     /locus_tag="RJ259_000116"
     CDS             complement(15141..16001)
                     /locus_tag="RJ259_000116"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HDV7365864.1"
                     /translation="MQNKIDYKNIKKIGLVTRPNVSLDKEILKLQSILSIYKVELVLL
                     KESSEILDLPKYGLDDLFKISDFVISLGGDGTLISLCRKACEYDKAVLGIHAGHLGFL
                     TDFKVDEAENFFQAFFQGEFRIEKPYLLSVFLEDKQGKILEKLAFNDVVISKNNQASM
                     AHIEVFRKEKKFNEYFGDGLIVATPAGSTAYNLSANGPIVYTLAQAFILTPVCSHSLT
                     QRPIVLPKGFEIEIMAKDCILCIDGQENYKMNDFKSIKVGLSDKNVALIHPKNRDYFQ
                     ILKEKLHWGN"
     gene            16092..17843
                     /gene="aspS"
                     /locus_tag="RJ259_000117"
     CDS             16092..17843
                     /gene="aspS"
                     /locus_tag="RJ259_000117"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HDV7365865.1"
                     /translation="MRSHYNTDLGISHVGQSVKLCGWVNSYRDHGGVIFIDLRDRSGI
                     IQLVCDPNDSKEAHEIASNARNEFVLIAEGTIRPRGEGLINPKLKTGEIEVVVSKLTI
                     ENESAVPPFAIADESVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFL
                     EVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCF
                     RDEDLRADRQPEFTQIDIEMSFCEQKDVINVAETFLKDIFKACGKEIQTPFRQMQYKD
                     AMENYGSDKPDLRFDLKFIDVIDIFTKSNNEIFANIAKDTKKNRIKAIRVPKGDTIFS
                     KRQMQRFEEFVRKFGAQGLAFIQVKKDGLKGPLCKFFSEEDLNELSKRCELEVGDVVF
                     FGAGAKKTVLDYMGRFRIFLANELKLIDPNALEFLWVVDFPMFEQNDDGSYSAMHHPF
                     TMPKNIDETDLEEISSIAYDVVLNGVELGGGSIRIHKNDIQQKVFKLLNIDEEQQKEK
                     FGFLLDALSFGAPPHGGIAIGLDRLIMLVTGANSIREVIAFPKTQRAQCLMTDAPSPA
                     SNEAMRELGIKLRENIK"
     gene            17840..18418
                     /locus_tag="RJ259_000118"
     CDS             17840..18418
                     /locus_tag="RJ259_000118"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HDV7365866.1"
                     /translation="MKELFLIIGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVA
                     SGSELGKTIDSFISKGNLVPLDVVINTIVYALKAAPTKTIIIDGYPRSVEQMMEFDKV
                     LSEQNEICLKGVIEVRVSEEVAKERVLGRNRGADDNEEVFYNRMKVYTEPLNEILDFY
                     QKKKLHFIIDGERTIEPIVADMKELIKKIQSI"
     gene            18428..18946
                     /gene="ppa"
                     /locus_tag="RJ259_000119"
     CDS             18428..18946
                     /gene="ppa"
                     /locus_tag="RJ259_000119"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HDV7365867.1"
                     /translation="MNLSKIKIGDIPNKINAVIEIPYGSNIKYEIDKDSGAIMVDRVM
                     ASAIFYPANYGFIANTLADDGDPVDILVLNEYPIQAGAVIPCRLIGVLIMEDESGMDE
                     KLLAVPNSKIDARYDNIKTYTDLPQATLNKIKNFFETYKILEPNKWVKVQDFKDEKAA
                     IEILEKAIKNYK"
     gene            18987..19484
                     /gene="msrA"
                     /locus_tag="RJ259_000120"
     CDS             18987..19484
                     /gene="msrA"
                     /locus_tag="RJ259_000120"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDV7365868.1"
                     /translation="MKNIVLGGGCFWCVEAVFERLKGVINTEVGYSGGKPNPSYESVC
                     NGDGNIEVVKINYDEKQISLLEILTLFFKIHDPTSIDKQGGDIGIQYRSIIFYENEED
                     KILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPDQGYCQAVIAPKLQ
                     KIQSD"
     gene            complement(19660..20499)
                     /locus_tag="RJ259_000121"
     CDS             complement(19660..20499)
                     /locus_tag="RJ259_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HDV7365869.1"
                     /translation="MQNILSSFAQEKNVCVFANTLKTSIEELEKEFLKQNLKFKKINV
                     YCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQSVLDMCAAPGGKSI
                     NLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKIL
                     LDAPCSTFAKIGFDLEKSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEEN
                     EEVIENALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDYDGFFIAKLR
                     KLC"
     gene            complement(20528..20911)
                     /gene="ruvX"
                     /locus_tag="RJ259_000122"
     CDS             complement(20528..20911)
                     /gene="ruvX"
                     /locus_tag="RJ259_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HDV7365870.1"
                     /translation="MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKN
                     LLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLEFDKEICFVDESGTSKEALGYGV
                     ANTRKKDGKLDSLSAFIMIKDYFAL"
     gene            complement(20908..21681)
                     /locus_tag="RJ259_000123"
     CDS             complement(20908..21681)
                     /locus_tag="RJ259_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HDV7365871.1"
                     /translation="MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSR
                     RMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITASMAAMPNTIGIFANGLDQIYPR
                     TNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
                     AKLALELNKPLYVLPQRLEESTGTNFLLKENKSKLICDFKEFVSEFASIDINQDEFLE
                     FCKKGVSVDEALKIYGQKVYEYELEGKISIEGLFIRVLA"
     gene            complement(21671..22753)
                     /locus_tag="RJ259_000124"
     CDS             complement(21671..22753)
                     /locus_tag="RJ259_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HDV7365872.1"
                     /translation="MSKKKLVQIQRYLIIAILFLLCIALALGILVKYQNSQDVSSVKP
                     DYFIDKQEDLISLNKDHYEIGIFQENEFDNNKSVSILEQKIQEIDDLNTSLNEQNLSS
                     VEQNLSLEQNQSLEQNFILKDTNLTQDQNLTFNEDIHLNKISKKPKLAIIIDDMANAS
                     QVRGLKALNLKLNPSFFPPDKNHSETPKLALKFDFYMVHLPLAAINYNKPEIDTLNPN
                     DSKERIFKKIKQIKKDFKDLRYINNHTGSLFTSNEEAMRKLYEALKNQNIFFVDSKTI
                     GNSKANKIAKELSMPYIQRDVFLDNEDDVNYVKKQLESAVKLAQKKGFVIAIGHPRKN
                     TFKALEQSKDLLKGVDLVYLSEIYGK"
     gene            complement(22757..23779)
                     /gene="ilvC"
                     /locus_tag="RJ259_000125"
     CDS             complement(22757..23779)
                     /gene="ilvC"
                     /locus_tag="RJ259_000125"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HDV7365873.1"
                     /translation="MAITVYYDKDCDLNLIKSKKVAIIGFGSQGHAHAMNLRDNGVNV
                     TIGLREGSVSAVKAKNAGFEVVSVSEASKIADVIMILAPDEIQADIFNVEIKPNLSEG
                     KAIAFAHGFNIHYGQIVVPKGVDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESK
                     NAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCGGLSALIQAGFETLVEA
                     GYEPEMAYFECLHEMKLIVDLIYQGGIADMRYSISNTAEYGDYITGPKIITEETKKAM
                     KGVLKDIQNGVFAKDFILERRAGFARMHAERKNMNDSLIEKTGRNLRAMMPWISAKKL
                     VDKDKN"
     gene            23898..25832
                     /locus_tag="RJ259_000126"
     CDS             23898..25832
                     /locus_tag="RJ259_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacB/RNase II family 3'-5' exoribonuclease"
                     /protein_id="HDV7365874.1"
                     /translation="MKEFLNSLSYGISSHEVNNEFKQIFRELLTNHIIKEHKNKYYLN
                     NGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPS
                     AKVILVLKRANETSLMITKRYGQAVLGMNIKTGLSTALKASQKSLKALPLGTILKIEN
                     ENNNIIEVLGHIDDESVDEKISLALFNKNNEFSDACIKEALANGDSVDASMYENRMDL
                     RALPFCTIDPIHAKDFDDAIYFDTQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIY
                     FPHIAIPMLPRPLSENICSLKPHLDRLAYCFKITLNHENKVIKEELFEGIINSKRRFN
                     YDEVDEILIQKPDLKELSWLYELFEITKNLRKMRLKNAFEFRTEELRMNLDENLSLKS
                     TVFEKDTPSHNLIEDCMLLANKAAAKLIDIGVFRNHLSADVRKIDKLLNELRELGIDV
                     NFKPNLPELIRDIQALADELNLRAEVDKLIIKAQKKAEYSSVNAGHFGLGFDKYSHFT
                     SPIRRYSDLILHRLLKAKQKNDEKLFNYLLLNIESTCENLSTLEREADKVAFDFMDRK
                     FARWAAKNIGKKFKALVVQNDGVCIAKLDDEIKGADIILYDTRVNLLENVEVQIMEAD
                     IVMAKIYAKITQRLIKEENV"
     gene            25825..26790
                     /locus_tag="RJ259_000127"
     CDS             25825..26790
                     /locus_tag="RJ259_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HDV7365875.1"
                     /translation="MYRKELQILLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDE
                     TLKLFFEEYNFTRASDFLSAGSLFSEKKLLEIKTSKKIPTKDLKVLVDLCKNNADNFF
                     LLELYDESSKQSDIEKIFSPHFVRFFKANGAKEGVELLSIKAKQLGVEITQNALFTLF
                     TSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNTGSFESFFEKILKKQDFKSELEK
                     ILDNFNEIALINSLYNSFYRLFKIALYAKVNGKIDFKDLLGYTPPPQVGQNLSSQAFS
                     LKIEQYKEIFTLLLKSEYELKTNSKLVKKEFLISNLLKLARILKS"
     gene            26883..27926
                     /locus_tag="RJ259_000128"
     CDS             26883..27926
                     /locus_tag="RJ259_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction enzyme HsdR N-terminal
                     domain-containing protein"
                     /protein_id="HDV7365876.1"
                     /translation="MDFENQLNAIVETIAERKTLVNTEEATKMTFIMPFLKTLGYDVF
                     NPSIVVPEYTADIGTKKGEKVDYAIFKDSKPFILIEAKNHTENLDNHNNQLVRYFNTN
                     PSIKFAILTNGIEYRFFTDIEQQNLMDKIPFLVVNLEKLKPRDIKDLKRFICTDLNLD
                     EILSIAMEKKYYRSIQEIFKSEIENPSDEFTSFFAKQMTEKRMTSAVLEEFKNYIKKS
                     FKEIINDLAYEKITSIKNNLQNINDDENDEQIDESKDIVTTEEELQGFYIVKSILASV
                     SANLEDVSYKDTLSYFSILYQGKVTKWICRLYFNTSKKSISFPDGASYNIEKLEDIYQ
                     YKADIIKAFESRK"
     gene            complement(27948..28292)
                     /gene="hypA"
                     /locus_tag="RJ259_000129"
     CDS             complement(27948..28292)
                     /gene="hypA"
                     /locus_tag="RJ259_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HDV7365877.1"
                     /translation="MHELSIVESLIELCEENALNNKACNVQEIYVKIGRLSGIEVDLF
                     KRCFETFKENSNICKNAKLFIELAPLEILCLKCDQTSILEENVFKCPKCQSIEYKITQ
                     GEDLHLMRLVME"
     gene            complement(28292..29266)
                     /gene="hypE"
                     /locus_tag="RJ259_000130"
     CDS             complement(28292..29266)
                     /gene="hypE"
                     /locus_tag="RJ259_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HDV7365878.1"
                     /translation="MKNISLAHGGGGEEMNELLTKLFKIFDNEILNANNDAAILGNLA
                     LSTDSFVLSPIFLDEEVNIGKLCVCGSINDVLMVGAKPKYLSLGLILEEGFELEKLER
                     ILKSIKEECEKCGVMLVCGDTKVVPKGKADEIYINTTALGEIISKKESKNIKAGLSIL
                     LSGDIGRHGASVLIKRNELEANVKSDCKALDKEVLELLEKDIKVVAMRDATRGGLSAV
                     LNEWAKQSGNDLLIFEEKIIVQDEVLGLCELFGYEAYELANEGTFILCVEKEDGLKAL
                     EILKKYNVNASIIGEVLEEKKARVILQNAYGAKRFLESPKGELLPRIC"
     gene            complement(29263..30354)
                     /gene="hypD"
                     /locus_tag="RJ259_000131"
     CDS             complement(29263..30354)
                     /gene="hypD"
                     /locus_tag="RJ259_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HDV7365879.1"
                     /translation="MNFIDEFRDKKSILALKKLIEQELKNPINIMEICGGHTHSIMKY
                     ALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKDTIFCTLGDLLRVPGSEISL
                     LDLRAKGADVRALYSPLEVLEIAKQNLNKNIIFFAIGFETTTPMSALLLQKLIEEKIN
                     NVFFHINHITVPAPVEAIMNDENVKINAFLGPSHVSVITGYGIYEPLAAKFKTPIAVS
                     GFEPVDILESVLNIIKQSNEGTFKVYNQYKRAVSKEGNVKAQNLVKKYFKVCDFEFRG
                     LGLIKDGGLELKEEFSAYDASKKFDCAVQSKNESKACICGQILRGLAKPYDCKVFGKA
                     CTPRSPIGSCMVSGEGACAAYYKYSKVNA"
     gene            complement(30338..30619)
                     /locus_tag="RJ259_000132"
     CDS             complement(30338..30619)
                     /locus_tag="RJ259_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HDV7365880.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFHR"
     gene            complement(30619..31362)
                     /gene="hypB"
                     /locus_tag="RJ259_000133"
     CDS             complement(30619..31362)
                     /gene="hypB"
                     /locus_tag="RJ259_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HDV7365881.1"
                     /translation="MCKDCGCSINSSHTHDHHHDHHHENPSLKESKTIEVISKILSKN
                     DEEAKHNRAHFNETNTLCINLMSSPGSGKTTLLESTIKALKNELKIAVIEGDLETNND
                     AIRVKNAGALAYQITTGQSCHLDAFMVHEALHHLAIDDVDLLFIENVGNLVCPASYDL
                     GEHLNVVLLSVTEGSDKPQKYPVMFKKADIVLITKADLAHHFDFDVKEATRLIKELNP
                     RADIITLDAKNDTNMELWYKVLKLKKELF"
     gene            complement(31439..33628)
                     /gene="hypF"
                     /locus_tag="RJ259_000134"
     CDS             complement(31439..33628)
                     /gene="hypF"
                     /locus_tag="RJ259_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HDV7365882.1"
                     /translation="MCHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGVE
                     IILACTQKECENFIENLKNHLPPLARIDQLIITQISISNYENFSITPSLENTKSTPML
                     SDFALCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRAHTSMQELLMCEF
                     CKSEYEDPKNRRFHAQPISCPKCKINVFLKNPKGEILAKDQEAFIQSAKFLKEGKILA
                     IKGMGGFHLMCDAFNEEALKTLRLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLG
                     GVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFKGSLVATSANLSGESI
                     IKDEFNLRQKLDKVFDFYLDYDREIINASDDSIAQVVNGKTMFLRTSRGLNPFYLERN
                     FNKKGTFLALGAELKNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLK
                     FDAILCDKHPHFSYAKEFEERIKISHHYAHFCAAYFEYEENFAKDEKALAFICDGTGY
                     GEDGKIWGGEVFVGNLKEYERIAHFENFTLINSDIKNIQNLALSLIFHYDLEDKAKDF
                     LAKIPKIKLKNLKKIYSHSNLQTSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYD
                     KNLDFSYKLFVEKGQVNFKNLILGALQDEKTKAITGMFNALANFIIDFSKDYDLKVLL
                     SGGVFQNKTLLEILKAKNFDFFVPLKYPCNDSSIALGQMVHFLNLEK"
     gene            complement(33609..35129)
                     /locus_tag="RJ259_000135"
     CDS             complement(33609..35129)
                     /locus_tag="RJ259_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7365883.1"
                     /translation="MTLDFDFIYNADNDIFEYLLRFYAKNYNYTLSKEENTYHFSIDA
                     DEENLKTFCDSLNLMSHSVFLKKFDVKAGQDFNPCIPEDKEFSKFSYITHLNSNAYQE
                     KKLLNKNEWGVFCECEFSSNLSEFEKINEENFNTFLNLAFDLLSQEKKIYLKDKNGIY
                     EFSLFKNEFIGDFLLPCDIKAINSVFVCSNENLKLLASLEKPLMKLRLNAIFRKNHNL
                     DFNDFKIRLARDLFCFALGLKLFENEYKFLSVKKIEEYQKDFYISALDEQVVVLEGFE
                     FINAKARELIFSKEDKNMARISYLVSRYKEKAFILELSKDDEDILLINKELNLLKLCL
                     PKHSKELYEEIKKDEIGARLLENFSKEFPLLDENFELQNNFYSLFGLVGRVLNLGKNL
                     QESVSELLKIADESKMPRGVKIDYRLKEDKSFDYTRTLRSAMSFMLAGVDSANIAYGA
                     VESLAYFLRDTYDELREKKQSDLALISGSLFEHKSLLKNTLKHLKNCQLSDVPLRI"
     gene            complement(35171..35818)
                     /locus_tag="RJ259_000136"
     CDS             complement(35171..35818)
                     /locus_tag="RJ259_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HDV7365884.1"
                     /translation="MARQSSSLKSFIYKDECYFYSKKRIKTLRLRINERGEFVLSIPY
                     FCTFKSVYEFLDKSSSWMNEAKKRFEKKVLKDDELIFLAKKYKIIFDENVKKTYFDKD
                     KIICQNKAKLDLFLRQNAKKIFTFYLKKWSQKTGLFYTHLSIKNMKTRWGSCNHNKAY
                     INLNLKLIQKSLRAIEYVILHEICHLKFPNHSKEFYDFIEYFMSDFRQREKEFLS"
     gene            complement(35794..37110)
                     /locus_tag="RJ259_000137"
     CDS             complement(35794..37110)
                     /locus_tag="RJ259_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HDV7365885.1"
                     /translation="MAKKQLSLTRLSFPIFWDLLSKYLTVIINTAMVSHYSNFLVGAM
                     GAGNQILDLFITIFSFLSVGCSVVIAQAIGAKDHVLARKVIHQSLFLNALLGFVCGVL
                     ILWHGEYLLYLLKIPQELLKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYWVMLI
                     GFLMDIVVICGNYYVLHYTKSELFGVGLSNIFARIVAIVALLVILFYKLKIHLKIKEM
                     IKLEKEVLKKVLNIGGFSAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIM
                     LIGQATSIANEIIVGKLVGARYENIAYKHAWRALYFSVIASALVALLNYLCQDFTMQI
                     LGLKEELKNLMIPLFALSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLP
                     VGYVLCFHFNLGILGVWIGFCADEFLRGMVNSYRWKSKKWQGKALV"
BASE COUNT        13009 a         6299 c         4895 g        12935 t
ORIGIN      
        1 tattagttaa aatattttaa gcataaaaaa gaaaggtatt gggaagtgac taaacaagaa
       61 atacaaaaac tcgatacaaa tttcctaggt catcccaagc ctttattctc tctatcaatg
      121 gtagaacttt gggaaagatt tgctttttat ggcatacgat ctttacttgt gcttttcatg
      181 gcaacaacca taagcaaagg tggacttgga ataagcactg aatacgcctc ggcaatttat
      241 ggcatttttg caggatgctt gtatttagca gcacttcctg gaggctggat tactgataat
      301 tatttagggc aaaaaaaggc tttatttcta ggttctttta ttatagcttt aggacatatt
      361 agcatagcct tatctattct aagcacacct atatttttcc taggacttac ttttatcgtt
      421 attggtactg gattttttaa aactagcgct tctgtaacag ttggaatgtt gtataaacaa
      481 aatgatacaa gatgcgatac tggctatacg attttttata taggaattaa cattggagca
      541 ttcattgctc ctcttatatg tggttttgtt caagcaaaat ggaattatca tttaggattt
      601 ggcataggag gtttaggtat gctaatctct ttgcttattt tatattttaa agctacccct
      661 gaacttgaag aatttcataa aaattgtact ttaaagcaaa actgggaaca accatttaaa
      721 aaaagtaaaa atttaactct tatactaagt ataagcttgt taagtattat tggatttttt
      781 ctaattttta ttaatcttgc agatattaat cccataatac tatcaaaaaa acttctaatt
      841 gtaattttac tatgtttggt aatttatttc atatatcttt ttgtttttaa aaccttaaat
      901 aaaagagaaa aacagcaatt aacaatttta attgttttat tctttgcagc catttttttt
      961 ggagcacttt tgaacaaaaa cctaccgctt ataatctttt tgcgcaagat tttacaaata
     1021 gaaatatttt tgattggaaa attccaacaa actggtttca atcttttaat ccaattttta
     1081 tcatcgtact tgctcctata gcaagttata tttggatatt tttagagaaa aaaaatatat
     1141 atttttcttc cattggaaaa tttactttag gaatattatt tgccggtatt ggttttatga
     1201 tgatgacctt tgcttcacaa aatctaataa acaacaatgg tttaccaata tccatggctt
     1261 ggattatcat aagtatattc tttttaacac ttggggaatt atgcgtgtct cctattggac
     1321 tctctataat ggctaagatt gcccctgatt taatcaaaaa tcaaatcatg ggactttggt
     1381 ttgtagcaag tgcacttgga aattttgttg caggacttat agggggaaat gtcaatatta
     1441 aaaacatcga tcaacttcct aatatttttg gacaatgcat gtggatgctt tttgttgtag
     1501 cgcttttact ttttattgct aaaaaaccaa tttataaaat tcttaacgaa aaaaataagc
     1561 aattatctaa ctaaacttaa aatacaaaat acaccaaagt tgaaaattga tcttaatatt
     1621 tcttttttta tatttgcaaa aaagtaacat tatgatataa atcatttaaa aatattacaa
     1681 agttatacat attttttaat ttcttgtcta taatttataa ataaaaatac acaaaggata
     1741 taaattgagt aaaaatgtaa aaaatttaga tacttcattt tttggacatc caaaaccact
     1801 tttatctctt tcacttactg agctttggga aagattttct ttttacggaa ttcgtccctt
     1861 gctttacctt tttatgatag caagttttga aaaaagtgga atgaacttaa aacctgaaga
     1921 agcaagtgca attatgggaa tttttgcaag ttgtttatat cttgctgctt tgccaggtgg
     1981 atggcttgcg gataattact taggacaaaa aagagcaatt ttactaggtg ctttaactat
     2041 agcatttgga catttgtgca tagccttttc ttattttaac aataaaatga tttttgttgg
     2101 tatggttttt ttggttatag gtacaggact ttttaaaact tgtgcttctg taatggttgg
     2161 aatgctttat aaaaaaaatg atgcaaggcg tgactctggt tttactcttt tttatatgtg
     2221 ctttaatttt ggtgcttttg tagctccttt aatttgcggc tttttacaaa aagaatacgg
     2281 atggcatttt ggttttggtg caggtgggat tggtatgctt ttagcggtaa ttattttcta
     2341 cctaaaaact atgcctgatt taaaagaatt tgatgaaaaa gttggcatag acgctacttg
     2401 ggatagacca agcaaaaaaa gcaaaaatgc attttacatc atcattgtat caggtattgt
     2461 tttacttgga gcaatatttt taatccttgg tggttttata aaattagatg cacaagttat
     2521 taataaaaat attattctaa ctatcttagc ttgtgctgga atttattttt tatatctttt
     2581 cgcttttact tctttaaaaa tagaagaaaa aagaaattta attattttta ttgttttatt
     2641 tttagcggct gcgttatttt ggtcagtata tgagcaacaa tacacttctt ttaatttttt
     2701 tgcagaaaaa ttaacagata aaaccatatt aaattatgaa attcctacaa tatggtttca
     2761 atctcttgga ggtttatttg ttatactttt tgcacctttt agtgctttta tatggactat
     2821 atgtgccaaa aataataaag aaatttcatc tattattaaa tttgcattag gacttttggg
     2881 tgcagctttg gcatttttaa taatggcttt agcttcaaat catgcaatta gtttaaatgg
     2941 cgatgctaat atattaagag aaaatttaga aaattcatca caaattattt tagtttcacc
     3001 ttggtggctt gtcagtagct ttttgcttat ggttttagga gagctttgcc tttcccctgt
     3061 gggactttct ataatgacaa aaattgcacc taatttaatt aaatctcaag tcatgggact
     3121 ttggtttgta gcaagtgcat taggcaatgc tttagctgga ttcataggtg gtaaagcaag
     3181 tgaagaaaat atagcttatt tgccaaattt attttaccaa tgtatgtgga tattacttgg
     3241 tgctgttata attttactta tactcaaaaa acctatcaat aaaatactaa aaaattaata
     3301 ttaaggagaa aatatgagta tttacaaaca aagagtatta gaacttagaa gattaatgaa
     3361 agaaaataat attgacgcct atctcatctt aagcgcggat ccgcatttga gcgaatattt
     3421 accagaatat tacaaaaaca gagtctttat cagtggcttt aagggttctg ttggaacagt
     3481 tcttatcaca caagaagagg gctttttgtg ggtagatgga agatattggc ttcaagcaca
     3541 aaaggaatta gaaggtagtg gcatactttt acaaaagcaa gatgctaaaa atacttttac
     3601 caaatggttg gaaaaaaatt taagcgaaga tcaaatttta ggcatcgatt ttgcactttt
     3661 acctttatct ttgcaaaaag atttaaagat taattgcaag gcaaatttaa aacatataga
     3721 tttgataagt ccactttgga aagatcgtcc cactttacca caagaaaaaa tttatgaaca
     3781 cgaactagaa tactgctctt actcaagaaa agaaaaatta gcattagtgc gtcaaaaaat
     3841 gaaaaattta aatgttacct ctcatttaat ctccagcctt gatgatatag cttggcttac
     3901 aaatttaaga gggaatgatg taaattataa tcctgtattt ttaagtcatt tgctaatctt
     3961 ggaagacaaa gctttgcttt ttgttgatca gaaaaaagta aattcagaac ttgaaaaaaa
     4021 attaaattta gatgggtttt ggcttaaaaa ttatgatgaa atcatcatgg agcttgaaaa
     4081 acttgcaaat acaaatttgc ttattgaacc ttcaaaaatg accgctttac tcataaattc
     4141 tttagacaaa agcgtaaaaa tcattcaaga aattaatcca agcactcact taaaagcagc
     4201 taaaaataca aaagaaatag cgcatataca agatgctatg atagaagatg gagtggcttt
     4261 atgtaaattt tttgcatggc ttgaagaagc gatagaaaat aaagaattaa taagcgaatt
     4321 agacatagat gctaaagcaa gcgaatttag agcacaaagc aagtactaca taagtgatag
     4381 ttttgccact atagcaggct ttaacgaaaa tgcagcatat ccacattata aagccacaaa
     4441 agagagtttt gcttatctta aaaaagatgg gcttttactt attgattctg gtggacaata
     4501 taaaaacggc acaacagata ttacacgcgt tgtaccaata ggaaaggcta atgcagaaca
     4561 aattcatgac tataccttgg ttttaaaagc acatattgcc atttccagtg caatttttcc
     4621 aaaagatata gctatgccct tacttgatgc aatcacacgc gcacctttat ggaaagaaca
     4681 aattgactat atacacggca caggacatgg cgtgggatat tttttaaatg tccatgaagg
     4741 tccacaagtt ttatcttatc tatcccctgt gcttgaaaaa acaaaagcca aagaaggtat
     4801 gctaacctcc atagaaccag gtatttataa agtaggtaaa tggggtataa gacttgaaaa
     4861 tttagttatt cataccaaag tagaaaatcc taaaaataaa gattttggag agtttttata
     4921 ctttaaacct gttactcttt gtccttttga aatatcttgt attgatacaa aaatgttaga
     4981 tgaaaaagaa aaagaatggt taaacaatta tcacaaagaa gtatttgaaa aactttctcc
     5041 taagctaggt gattatccaa aagctctagt ttggcttgaa aaaagaacaa aagctatctt
     5101 ttaagatact tttattaaca tagataaatt ttccttgtat taaacttata atttgtttaa
     5161 tacaaggttt ttaaaccaat tgctaaaaaa gtttttttga aaaactcaat ttacaactaa
     5221 aaattattta aaatatccaa gttcaatcat tttttgataa attttagcta cagttgcccc
     5281 tgaagtaata tttctcccac catgttccaa aagaacggta actacatatt ttggcttaga
     5341 ataaggagca taagaagtaa gccacgcatg agatctagta taatactcaa attgtttttc
     5401 atcgacccta tttttatctg tttgtgaaaa tcccacaacc tgagcagttc ctgtttttgc
     5461 tgcaactttc acatcaagat tatgcaaata acgataagag gttcctcctt gctcattagc
     5521 aacagcatac attgcatctc ttatataagg caattgactc ttttcaaata aagtaaaaat
     5581 ttctttttta ttttcatcca tttgattttc tatagttgta ttattatttt ctatgctttt
     5641 taaaaaatga ggtataacct ctccaccttt tgcgatttga gctgtatatc tagcaatttg
     5701 cataggtgtt gcaagaaaat taccttgacc tatagctgta tttaaagtat caccttgaaa
     5761 ccaagattgt ctatatcttt gcatcttcca ttctttgctt ggtaaagttc ctacaaattc
     5821 actaggtaaa tctacccctg ttttcgctcc aaagccaatg cgagataaag tttcacttat
     5881 ttgatcgatt ccaacttgca aactgccatt ataaaaataa acatcacaac tatattttat
     5941 cgcatgtttt aaatccacag gtccatggcc tgatcgattc caacatctaa aaaacctacc
     6001 tccaagctca atgcttccat tgcaaacata ttgagttgat ggactaatat ttttagaatt
     6061 taaaaaagaa agccctactc ccatttttac aacagaacct ggaggataat atccatttat
     6121 aagtttattt gtaaaaggat ggtcaagact atttgaaagc tcatcccaat ccttaaaaga
     6181 aatccctgtt acaaaaggat taagatcata ttcagggaaa ctccctgcag ctaaaataga
     6241 tccatcattt acattcataa ttatagcagc tccagcattc ccttcaaaca atgaagttaa
     6301 ataagattga agctctatat ctatcgtaag ttctatatca ttagacatag caggagtgta
     6361 agaaagctgt tctacttctt gatttaaggc attaacctta taaaccctag ttcctttttc
     6421 tccttgtaaa atatcattat aatagcgttc tataccactt tttcctgtat aattagaaag
     6481 ttttgctatt tcattttctt gaacatcttg caaatttgcc ttacctacat acccaataat
     6541 atgcgaagcc aattttccaa aaggatattt tctttttaca acaggatcta tttttattgt
     6601 tttattaaga tttaactctg aataatgcgg aataatctca tcatagggta taaaatctac
     6661 tactttaata aaatcttgat tatagtaaga atcatttctc ttataaattt ctgctaattt
     6721 actagcattt aaatcgggaa ataaatttgt aagttcagat aattctttat ctaaaattcc
     6781 tttatttgac tttttaatac tcaaataagg tttaatagaa atactaaaac ccaaatcatt
     6841 aatagccaat aaagttccat ttctatctgt aatttgaccc ctaacaggtg gtaaaaattc
     6901 agtttttatg gcattttgtt tggcaagttc ttcataatat acatttgatt ttatactcaa
     6961 ataatacaca cgacttaata aaaatataaa aaacaatagt ataaatccaa caactaaacg
     7021 cattctcatt taaattttac ctttaaaaaa cacataagct aaacaacatt ctataaaaac
     7081 tgaaacaata tacgcccatc ctaaaatttt aattttttca tctccaatat aagacaatat
     7141 catatccaaa aacaaaataa tgccgtaagc acaaagcaca aaaacaacag ggataaattt
     7201 accaattttt aaatttgtct taatccaatc tgcacaaaga taataaaaaa taaaaaatgc
     7261 caaccaagat gaaaaaataa aaaaattata agttatatca gtaaaaaata aaaaaaataa
     7321 agaaaaatac catctaaaat caagctttga aaaagttctt tctctctctt ctagtaagca
     7381 aaacatataa cagaaaaaaa tcccataaag taacggagca tatataaaag tcgaaccaag
     7441 aatctgatag attagaaaaa aaaatcctaa aaagacataa gctccattaa attttgcttt
     7501 ataagcactt aaatttcttc tcatttatca agacctaaag tttgattgat aataatatct
     7561 tctaaagaat caaggccaaa tttattcaaa tttgaaacta aaatagagtc tttaaattca
     7621 ttttttaact tagctttttc actttgattt aatttatcgc atttggtaaa aacttttaaa
     7681 attttttgat caggtcgtaa aaatcttttc aaatagtcat ttaaatttac atcgatctct
     7741 aaatgagtat gtcttgagtc gattaaatgt ataaataact ttatcgaggt tcttaatttt
     7801 aaaaattcat ctaagttttg attccatatt tcttttaaat ttttagaaac ctttgcataa
     7861 ccaaaccctg gcaaatcgat aaaattgata ttaaattttt cttcatttct tttgcaagtt
     7921 acttcgaaaa aatttataag ctgagttttt ccaggagttg ccgaactttt ggctaaattt
     7981 ttttgtttac acaaagaatt gattaaagaa ctttttccga cattggagcg ccccaaaaat
     8041 gctacttcgc taaaatttga gctcaaattc tcatcaaatt tcactaaaga agtgataaat
     8101 ttagcactaa ttatcatttg tctttaagat caaatacaaa acgagcaggt ttttgatcct
     8161 tgctctctac tcgataaata ttagcttttc tatcgactat tattttatca ccaaaaagtt
     8221 tttgattgct tccaagctca tttatataag catgaccatt aatctcgtaa gtatctttaa
     8281 taacattata aataaattta tctccactac ctttataagt tttacctttt aaaacaatct
     8341 taaacctagc gttttgcatt gcttcataac gaataggttt gcgattttta tccgtataaa
     8401 taatcaattt ttcagaattt aaaatatcat cacccctaat tacttctaca tttccactaa
     8461 gaatactttc acccttattt tcatctgaat aaaaatttaa agcttttact tcaatttgag
     8521 ttgcccaagt tacacttaca caaactaaca ataaaattat ttgtcttgca accacgcgtt
     8581 tactccttgg atatttaaaa ttttgttttt tacatcatag tttaaagtat ttccgttaat
     8641 aatacttcca ttgatcagag ctttaaaatt agtatttgtg tgtaaaattt tatccttagg
     8701 ttggtattct acctcttgag aaataatttt gacattatta gaacctatat aagtaacatt
     8761 tccttcaaac aaaaccttgc tcatatcttt attgaaaaac tctaaacgat tcgcgctaag
     8821 attaaaatct aaatttaaag taataaaatc attaaattca tctctatctg catatctcac
     8881 ccaagaattt gccttataat atgccttaat tatactagta ttactctcat aagctttcaa
     8941 atttttagcc tcaatatttt taaaatttaa agcattagtt tgcaaattca aagaatacgg
     9001 atcttgcaaa cttaaaatcg taaaagtaat tgtaaaaaga gcaattaaaa ttccaaaaat
     9061 ttttatagcc aaagcttatt ccattcttct tctagatgat ttttttctac taaaatttct
     9121 atcatctgtg ctacagcagc cttaccacct tttttgctaa gcactatgtc tacatttaaa
     9181 tctttatgac catcttttgg cttaaaacta agtcctacac tttcaagcaa agccttatcg
     9241 ttaaaataat ctccaatagc cgcacactga gaaaaatcta aattaagttt ttgtaaaatt
     9301 tcttttgcac aagctaactt atccttgata ccttgatata aaatttttat ttttaaatct
     9361 ttagctcttt tttcaacaca aggacaattt ctacctgtaa taatagcaat ttttttacca
     9421 agctttagcc aagcctcgat agccgctcca tcttttacat caaattcttt aataaattct
     9481 ccattagaag tataaataat cttcccatca gttaaacagc catctacatc caaaaaaatc
     9541 aattctgtca taatttctac tctcttacaa caaatgcacc tgcaaatgca ccacttgcag
     9601 caaaatccct tgcttcatct tcacttctaa agcctgttaa gaaaacgcga tttaacccat
     9661 ccactgagct tgtgcgtata gtagagctat aagttctata agttttatat cttgctgcta
     9721 tcgtttgtgc tccagctggg tttttaaagg ctccaatttg aaccatgaaa tttccacctt
     9781 cataaatttg tccattattt gcaatctctc cactatttcc atagtttaca ttagaatgta
     9841 caatattatt acccgaatta cttgatccaa accctataac ctcaagcctt actggagctg
     9901 ttcctgaagc aatcatatca atttgactag cagctccttt tgataaatct ataatacgat
     9961 tatttacaaa aggacctcta tcattcacac gaacggtaac ttgacgattg ttatttagat
    10021 tggttacttt taagatggta ttcataggta aagttttatg agccgcggtt aaagcatttt
    10081 gattataggt ttcgccatta gaggttttct tgccgtgaaa gcctggccca taccaactcg
    10141 caataccatc agcagtttcg cctactgcta caacagtagg ataataagtt ttaccgttga
    10201 tagtataagg cttcattgtt cctttagtcc ctgaagaact aggactgctt ttaaaatcat
    10261 ttgaaggata atacacttga gcattatcca agctagaaaa aaaactagtg cctaaacaac
    10321 cactaaaaaa taaagcccct agactaacgg ctgacaactt tagtgtaatt gtttttattt
    10381 gcatttttat tctccttgat tggtataatt aatttttgat taatgctaag atgatttttt
    10441 gctattttat tgaattctcg aatttcatca acacttatat tataattttt tgctatttta
    10501 tataaagagt caccagactt aacggtataa gttcttgtca taggtatagt tgtatcaacc
    10561 ttcgcaagtt tttctgcttt aaaattttta tcaaaaaatg ctactttatt aagtggtata
    10621 tacatataat accctttacc aggaggcgta aaattatgtt taaattgtgg attatatttc
    10681 ttaaaagttg caagatccat atttaaattt ttagctattt cttttaaaga tgcagaagaa
    10741 ggcacatcaa cttttgcaaa ttcattgctt aaagcataat tcattaaaga cgcatcttta
    10801 tctagtaaaa aatccctatc attagctaaa aaagcaagcg ttaaaatctt tcttataaaa
    10861 tttctagttt ctaaagaaag atatttctta tcagggttca ataaaacact taaatcatca
    10921 cttcctgctt gcttgatagc ttgtcttagc ttgccatttc cgcaattata agctaaaagt
    10981 gctaaatacc atttgccaaa ttcttctttt aactctttta aataatttgt agcggcataa
    11041 gttgacttga ccggatcacg cctttcatca acataagcat cgattcttaa acccaaattt
    11101 ctagctgttg gttgcataaa ttgccaaacc cctacagcct tggcattaga aacactatga
    11161 gttttcaagc ctgattcaac catagctaga tacaaaatct catcaggaac ttcctgctgg
    11221 gctaaaattt ttcttatcat aggagtaact tttgaaaaat tttgcatact atctattaaa
    11281 gtttgagcat gttttgattt tatatcttgt tgagtttgca caaaaatcaa atcactaata
    11341 aaacttggat taatatctaa atttcttaaa acattcattt gtctttcata aaattcagga
    11401 gtattaattt gcgcaaaaag aaaattaaaa catattaaaa aacacaataa aatttttttc
    11461 attaataacc tttaaaaaat aatttttcag aattgttaaa acaaatttct agaagctctt
    11521 ttcttgataa attcaatact tcacacattt tgtttactac aaattgagtt aacaaaggtt
    11581 catttctttt accacgataa ggctctggag taagatatgg agcatcagtt tcaagtagta
    11641 gtttatcttt tggaatttta ggcaaaatct caactaattt cttagcattt ttaaaagtta
    11701 aaactccccc aataccaaaa taaaatccct cttcaaaaag agttagcaaa tgttcgcttg
    11761 cattaaagca gtgtaaaact cctcctacaa gatccttaga atacccatgt aaaatctcat
    11821 aagtatcatg atttgcttct cttgagtgaa tgataacagg ttttttaaat tcaatagcaa
    11881 gctcaagctg tgcaataaaa atcttttttt gattttcttt ttctttttga atttcttcag
    11941 caagatcact tttaaaacgg aaataatcaa gcccacattc acctacagct acacactttt
    12001 catcgcataa atactgtctt aaaattttct catcataatt atcaatttca taaggatgca
    12061 cccctgctgc aaaaaaaata tttttatatt tatgagcaat tgtagctgca taaggcaagt
    12121 cttttatatc agcaccaggt atgatgattt tctctatacc atttttaaaa gcacgattta
    12181 aagtttcatc taaatcatct ttaaatgctt cactgtctag atggcaatgc gtatcaacaa
    12241 tccttaaacc atcttgaaaa tcaagattta agaacatact tcaactctat ccttgccatt
    12301 atcttttgct tgagacaata ttttacttgc tttatcagcc aaagaatcaa tcttatctcc
    12361 actttttcca aaaaccacgc ctatagaagc tgtaaaaaag acttcatcta aattaactaa
    12421 aacaccagcc ttttttatat ttactcgtat acgagaaaag attttaatcg ctctttcttg
    12481 ggatatattt ttaagcaaaa tacaaatttt ttctgcacta tatctaccta caagatctct
    12541 tcctttagtt tcattgacta tttcattggc gcagatttta attacttcat caccaacttc
    12601 acggccgtat tcatcgttaa tcatttgaag attatctata tctaagaaag caaaagcaaa
    12661 ttcctcgtct tttgttgcta tttcgttaaa ataatcatct attccatcga ttaaagcatt
    12721 ataattttta accccagata caggatctaa aacattataa gtgcttaaaa attttttatc
    12781 atccatgtaa gataaacaac gatctaagcg acaattaaaa ctttctttgc ttaaaggctt
    12841 aaacaaatac tcattaactc catttttaaa agaattcgct tcaaatgaat cattatgatc
    12901 ccccaaaaga atcacaccta attcatcgtc actaaaacgt tctcttactt gagtcaaaag
    12961 ctcaaaaccg ctaattactg gcatattgac atctgctata ataagcttaa catcattatt
    13021 atcatttaaa taactcattg cttcttcacc atgagctgca gctaaaacat taaattgtct
    13081 ttgagtaagt atttttttaa tttcattacg ttcaggtagc ttgctcatag ctaaaatcac
    13141 tttagttttt gcatattgat taagttttac aatagaacta ataatctcat caatgcaagt
    13201 ttcactttct ttaaaaatat aatctaatat atctttatcc ataaattttt ctttagtagc
    13261 cttatcacca ctagccgtaa gaacaatagc aggaattttc ttttctataa cataatccac
    13321 aacttcacca tttggggcat ctggcaagca taaatccaca aaagctaaaa aataatcatt
    13381 attcattaac tccttagctt cagcaaaacc aaaagcaata tctacctcat agtctaaagt
    13441 catttgaatt tttttagcca aaagtttgcc gagcatttta ttgtcatcaa taattaaaat
    13501 tttcttattc atagtgtgta aaataccttt atatctaaaa ttttttatta tatttgtttc
    13561 aaaagaaagg aaatttttat agttatatat tttaacatag caaaataaaa aatccgctta
    13621 attcttaaat aaggtcttag caaattcgat cgcttcatca ctaacaagct ctccacttac
    13681 catcctagca agttctttaa ttctttcttc ttgatcaagc ttttttacct tactttcttc
    13741 accatttttt tcaactaaaa aatgattatg tgccttagag gaaagttgag gcaaatgaga
    13801 aatagcaaaa atttgataaa acttagaaag ttcctctaaa accttagcta tactcatagc
    13861 ctcttttcca cttaaatttg catcaatttc atctaaaaat aatatccctt tgcctgtatt
    13921 taaaatatta cattctgtgg ctataaaagc aagtcttaag cgatttaatt cacccgaact
    13981 taaatttttt aaatgagcta aattaatatc tagcattatc tcatctttgc ctaaaattga
    14041 aattttttca ttttctttaa gcgtcaaact tgcatctttc atataaagat ctttaagata
    14101 attatttaaa catttttcta attttttaag gtttttcttt cttgtttgag ttaaaatttg
    14161 tgctttttct tctaattttt gttttaattc ttgaaatttt ttttcaagtt cttttttttc
    14221 aaaacttaaa ttttcataat gctctagctc atattttttt tgttttaaaa cttctaaagc
    14281 attttctatg ctttcataac gcttgataag ataggataaa ttttcaatgc gatctaaaag
    14341 cgcctccaca tcaaaatcca aatcttccat tttttgattt tcgcaaatca cacgcaattc
    14401 attcaaacat tcactaaaaa aactcgcatc aacttcgctt aaatttaaag cttcaataac
    14461 aactttttca agctcaaaaa tacgctctgc cttactccaa gcttcttcta atttatcttt
    14521 tttagaaagc ttttttttaa gtattaaaag ctcttcatac tcacctattt taggattaat
    14581 gcttgaaatt ttttcaattt gcgctctagc tagttctttt aattcttcta cttttttttc
    14641 ttcttctaaa attgcattaa tctcattaga aatttgacta taagcattaa aatctttttt
    14701 aaaatcttct aaaaaggaaa caaaatttgt attttcttgc atctccaagg catctaagag
    14761 atttaaaaat ttttcatttc caaattcgtt attttccttt gcgcttaaat acttaataaa
    14821 agttttactt aaattttgca aacttttttt cgctatgctt tgattgttaa taaaatattt
    14881 tgtgtttttt tcttttaaaa gcttaaaaac attctcctct tcactttcta taccaaaact
    14941 ttctaaatcc aacttatcat ctagttctat ttcgacaatt ttagcctcac tttcactcaa
    15001 agaaaatgcg gataaaattc ctttaaacaa aactgatttt ccagctccac ttagccccgt
    15061 aaaaacggta agccctttag aaatttcaag ttcagccttt ttaaaaccaa gattttcttt
    15121 cataaaaatt ctatttatca tcaatttccc cagtgtaatt tttcttttaa aatttgaaaa
    15181 taatccctat tttttgggtg aattaaagcc acatttttat cacttaaacc cacttttata
    15241 cttttaaaat cattcatttt ataattttct tgcccatcaa tgcaaagtat acaatccttt
    15301 gccataatct ctatttcaaa accttttggt aagacaatag ggcgttgtgt taaagaatga
    15361 gaacaaacag gagttaagat aaaagcttga gctaaagtat aaactatggg cccatttgca
    15421 cttaaattat aagctgttga acccgcagga gttgcaacaa taagcccatc tccaaaatat
    15481 tcattaaatt tcttttcttt tctaaaaact tctatatgag ccatagaagc ttgattgttt
    15541 ttactgatga ccacatcgtt aaaagctaat ttttctaaaa tttttccttg cttatcttct
    15601 aaaaaaacac ttaacaaata aggcttttct attctaaatt ctccttgaaa aaaagcttga
    15661 aaaaaatttt cagcttcatc aactttaaaa tctgttaaaa aacctaaatg tccagcatga
    15721 attcctaaaa ctgctttatc atattcacaa gctttacggc ataaagaaat caaagttcca
    15781 tctccaccta aagaaataac aaaatcggat attttaaaca aatcatccaa tccatacttt
    15841 ggcaaatcta aaatttcaga actttcttta agcaatacaa gttcaacttt atatatagat
    15901 aaaatcgatt gaagttttaa aatttcctta tctaaactca cattgggtcg cgtaacaagt
    15961 ccaatttttt taatattttt ataatctatt ttattttgca taaaaaatta tatcaaatct
    16021 tagcaaagca aaagaataaa aatactataa ttttgctcat tatcttaaaa aatctttttc
    16081 aaggaataaa tttgcgaagt cattataata cagacttggg aatttcccat gttggtcaaa
    16141 gcgttaaact ttgcggttgg gtaaatagct accgcgatca tggtggagtt atttttatag
    16201 atttaagaga tagaagtggt attatccaac ttgtttgtga tccaaatgat agcaaagaag
    16261 ctcatgaaat cgcttccaat gcaagaaatg aatttgtact tattgcagaa ggcactattc
    16321 gtccgcgtgg cgaaggactt ataaatccta aattaaaaac aggagaaatc gaagtagttg
    16381 tttctaaact taccatagaa aatgaaagtg ccgtacctcc ttttgctatc gctgatgaaa
    16441 gtgtaaatga agaattacgc ttaaaatatc gctttttaga tttaagaaat cctaaacttt
    16501 atgaaaattt tgccttgcgt tctaaagctt gtatagcagc tagaaattct ttggcaaata
    16561 tgggattttt agaagttgaa acccctattc ttaccaaagc tactcccgaa ggcgcaagag
    16621 attatctcgt gccttctcgt gtgcatcagg gtgaatttta tgctcttcca caaagccctc
    16681 agcttttcaa acaactttta atgtgtagcg gttttgatcg ttattttcaa atcgcaaaat
    16741 gttttagaga tgaagattta agagctgatc gccaacccga attcacacaa attgatattg
    16801 aaatgagttt ttgcgaacaa aaagatgtaa tcaatgtagc tgaaactttt ttaaaagata
    16861 ttttcaaagc ttgcggcaaa gaaattcaaa ccccttttag acaaatgcaa tacaaagacg
    16921 ctatggaaaa ttatggctct gataagccgg atttaagatt tgatcttaaa tttattgatg
    16981 tgattgatat tttcactaag tcaaataatg aaatttttgc aaatattgcc aaagatacaa
    17041 agaaaaatcg catcaaagcc atacgcgttc caaaaggcga tactattttt tcaaaaagac
    17101 aaatgcaaag atttgaagaa tttgtgcgta aatttggcgc ccaaggctta gctttcatac
    17161 aagttaaaaa agatgggctt aaaggtccac tttgtaaatt ctttagcgaa gaagatttaa
    17221 atgagctaag caaacgctgt gagcttgaag taggagatgt ggtatttttc ggtgcaggag
    17281 ctaaaaaaac cgtgcttgat tatatgggaa gatttagaat tttcttagcc aacgagttaa
    17341 aacttataga tccaaatgcc ttggaattct tatgggttgt tgattttcct atgtttgagc
    17401 aaaatgatga cggaagttat tctgcgatgc accatccttt taccatgcca aaaaatattg
    17461 atgagactga tttagaagaa atttcatcta ttgcttatga tgtagtgtta aatggcgttg
    17521 agctaggtgg aggtagtata agaatccata aaaatgatat tcaacaaaaa gtatttaaac
    17581 ttttaaatat cgatgaagaa caacaaaaag aaaaatttgg tttcttgctt gatgctttaa
    17641 gttttggcgc tccaccacat ggaggcatcg ctataggact tgatagactc atcatgctag
    17701 ttacaggagc aaacagcata agagaggtta tagcctttcc aaaaacccaa agagcgcaat
    17761 gcttaatgac agatgcgcca tcgcctgcta gcaatgaagc aatgagagaa ttaggaatca
    17821 aattaaggga gaatataaaa tgaaagaatt gtttttaatc ataggtgcac caggtagtgg
    17881 aaaaactacc gatgctagtt taatcgcaca agcagatgcg acaaatatca cacactattc
    17941 aacaggggat cttttaagag ctgaagtagc aagcgggagt gagcttggaa aaactataga
    18001 tagttttatc tccaaaggca atcttgttcc tttagatgtt gttataaata ctatagttta
    18061 tgctctaaaa gctgctccaa ctaaaactat catcatcgat ggctatccaa gaagcgtaga
    18121 acaaatgatg gaatttgaca aggttttaag tgagcaaaat gaaatttgtc ttaaaggtgt
    18181 catagaagta agagtaagcg aagaagttgc caaagaaaga gttttaggca gaaatcgtgg
    18241 tgcagatgat aatgaagaag tgttttataa tagaatgaaa gtttatacag aacctttaaa
    18301 tgaaatttta gatttttatc aaaagaaaaa acttcatttt attatcgatg gggaacgcac
    18361 tatcgaacct atcgttgcag acatgaaaga actgattaaa aaaattcaaa gtatataagg
    18421 agaaaaaatg aatttaagca aaatcaaaat cggagatatt ccaaataaaa tcaatgccgt
    18481 aatcgaaatt ccatacggct caaatatcaa atacgaaatc gataaagata gtggtgctat
    18541 catggtagat cgcgttatgg ctagtgcgat attttaccca gcaaactatg gttttattgc
    18601 caatactttg gctgatgatg gtgatcctgt agatatttta gtgcttaatg aatatcctat
    18661 ccaagctgga gccgtgattc cttgccgctt aatcggtgtt ttaatcatgg aagatgaaag
    18721 cggaatggat gaaaaacttc ttgcggttcc aaattcaaaa atagatgcaa gatatgacaa
    18781 tataaaaact tacacagatt taccacaagc aactttaaat aaaatcaaaa atttctttga
    18841 aacttataaa attttagaac caaataaatg ggttaaagtg caagatttca aagatgaaaa
    18901 agctgcaatt gaaattttag aaaaagcaat caaaaactac aaataatcct agcccttcaa
    18961 agggctaaac tcaaggaaaa ctcgcaatga aaaatatcgt tttaggtggt ggttgttttt
    19021 ggtgtgttga agccgtattt gaacgcctaa aaggtgtaat caatactgaa gttggatata
    19081 gcggaggaaa accaaatcct agctatgaaa gcgtgtgtaa tggtgatggc aacatagaag
    19141 ttgtcaaaat aaattacgat gaaaaacaaa tctctcttct tgaaatctta acactctttt
    19201 ttaaaattca tgatccaaca agtatagata aacaaggtgg agatattggt atacaatatc
    19261 gctcaataat cttttacgaa aatgaagaag ataaaatttt agctcaaaat ttcatcgaag
    19321 aacagcaaaa aatatttagc aaaaaaatag ttactaaaat ttcaagattg caaacttatt
    19381 acaaagctga aaactatcat caacattatt ttataaataa tcccgatcaa ggatattgtc
    19441 aagctgtaat agctccaaaa ctgcaaaaaa tacaatcaga ctaatttcat ctttttaagg
    19501 ttaaaaaaat ttcaacttta ttcacagcct tttcacgctg tgattttctt ttcaaagtac
    19561 ttaaaaatag aactttaagc tttaaaataa agaaaaaatt atttattgtt ttttaagttt
    19621 ttttatgaat ttgtatttaa atgtgaataa ttttatcaat taacataatt tcctaagctt
    19681 agctataaaa aatccatcat agtctaagct tggtaaaatc cgtctgcatt ttgaaatttc
    19741 agcaaattct tcactttgcc ctgctttagc ctcaacattt tccaaatcaa tatctaaaag
    19801 ctctaattta aactcacttt ttaaagcatt ctctatcact tcttcatttt cttccttggt
    19861 aaaggtgcaa gtactatata caagctctcc gcctattttt aatgccttta aagcagaatg
    19921 tagaagtttt ttttgagttt ttgcaatatt tttgatttct ttataacttt tttccaaatc
    19981 aaaacctatt ttagcaaaag ttgaacaagg tgcatcaagt aagattttat caaattttaa
    20041 agggcataaa ttgcctatat ttttaccatc tttcataaaa actttagcat tcacgccgta
    20101 atttttaaga tttttttgca aaataaaaaa tctatcccta ctcatctcat tgcaagctaa
    20161 ataacctgta ttttgcataa aatttgcaag attgatactt ttgccacccg gagctgcaca
    20221 catatcaaga acactttgcc ctgctttgac ctctaaattt aaagcacaca aataagaaga
    20281 ataattttgt atataaaagt gcgcctcatt aaaagctttc atagaactta agatagcctt
    20341 atctttggca tcaaacaaat aacaataaac attgatcttt ttaaatttta aattttgttt
    20401 taaaaattct ttttctaatt cttcaatgct agtttttaaa gtatttgcaa atacacaaac
    20461 atttttttct tgagcaaaag aagataaaat attttgcatt tcatctttgg tataaagttt
    20521 ttctattcta gagagcaaaa taatccttta tcatgataaa agcggataaa gagtctaatt
    20581 taccatcttt tttgcgtgta ttggctacgc cgtatcctaa agcttctttg cttgttccgc
    20641 tttcatctac aaagcaaatt tctttatcaa attcaagcaa agaaacaaaa tgcttaatgc
    20701 gtcttgtcat ttcttcttca cttgatccac ccttaggaat gcctacaatg agtaaagaaa
    20761 tttcaagtat tttaagtaaa tttttgattt cattagcggc ttgattgcga ttttttctta
    20821 aaactgcatc taaaggcaaa gcgatctttt tatctatgca aagcgctaca cctatgcgtt
    20881 ttaaacctac atctaaagcc aaagctctca tgctaaaacc cttataaaaa gcccttctat
    20941 ggaaattttt ccctcaagtt catattcata aactttttgt ccataaattt ttaaagcctc
    21001 atcaacactc acaccttttt tacaaaactc taaaaactca tcttgattta tatctatact
    21061 tgcaaactca cttacaaatt ctttaaaatc acaaattaac tttgatttat tttcctttaa
    21121 aagaaaatta gttcctgtgc tttcttctag tctttgtggt aaaacatata aaggtttatt
    21181 gagttctaaa gcaagttttg cactctgcat agaaccactt tttatatctg cttgtgcaac
    21241 cacaacggcc ttgcttaaag caataaccaa acgatttctt agtaaaaagt cataattttt
    21301 tggcaaataa tcatcttcgt attcacttaa agctaaagca ttttcataaa tttgtttaat
    21361 gattttttca ttagttcttg gataaatttg atctaaacca ttggcaaaaa tacctatagt
    21421 atttggcata gctgccatac ttgcggtgat atccacaccc aaagcaccgc cacttaccac
    21481 gcaaagatga gcatttttaa gcatactcgc taaggaaaaa acacaatttt tcgtataaac
    21541 actcatacgc cttgaaccta taatagcgat tttatcttgt tttaataaag ataaatttcc
    21601 tttatagtgt aattttttag gaggcttttt taaatcttta aaaagttcta aaaattcatc
    21661 aggcaaaatt tcacttgcca taaatttcac tcaaatacac aagatcaacg ccttttaaca
    21721 aatccttact ttgctctaaa gctttaaaag tatttttcct aggatgtcct atggctataa
    21781 caaaaccttt tttttgtgca agttttaccg cactttcaag ttgtttttta acataattaa
    21841 catcatcttc attatccaaa aacacatctc tttgtatata aggcatactg agttctttag
    21901 cgattttatt tgccttagaa tttcctatag ttttagaatc tacaaaaaat atattttgat
    21961 tttttaaagc ctcgtaaagc tttctcatag cttcttcatt gcttgtaaat aaacttcctg
    22021 tgtgattatt gatatatctt aaatccttaa aatctttttt aatttgcttg atttttttaa
    22081 aaattctttc tttgctatca tttggattta aagtatcaat ttctggttta ttgtaattaa
    22141 ttgctgctaa aggtaaatgc accatataaa aatcaaattt taaagcaagt tttggcgttt
    22201 cgctatggtt tttatctggc ggaaaaaaag aaggatttaa ctttaaattt aaagctttta
    22261 aacctctaac ctgacttgca tttgccatat catcgataat aatggcaagt tttggttttt
    22321 tagaaatttt atttaaatga atatcttcgt taaaagttaa attttgatct tgggttaaat
    22381 ttgtatcttt tagaataaaa ttttgttcta aactctgatt ttgctctaaa cttaaattct
    22441 gctccacact gcttaaattt tgctcattta aacttgtatt taaatcatca atttcttgaa
    22501 ttttttgctc taaaatactt acagatttat tattatcaaa ctcattctct tgaaaaatac
    22561 caatttcata atgatcttta tttaatgaaa ttaaatcttc ttgcttatca ataaaataat
    22621 ccggcttaac agaagaaaca tcttgggaat tttgatattt tactaaaatt cccaaagcta
    22681 aagctatgca aagtaaaaaa agtatagcta tgattaaata acgctgaatt tgaactaatt
    22741 ttttctttga caatgtttag ttcttatctt tatctactaa ttttttagca ctgatccaag
    22801 gcatcatagc acgcaaattg cgtcctgttt tttctatcaa agaatcattc atatttttgc
    22861 gttctgcatg cattctagca aaacctgcac ggcgttctaa gataaaatct tttgcaaaaa
    22921 caccattttg tatatctttt aaaacacctt tcatcgcttt tttagtctct tcagtgataa
    22981 tctttggccc tgtgatgtaa tcgccgtatt ctgcagtatt tgaaatagaa taacgcatat
    23041 ctgcaatacc accttgataa atcaaatcca caatgagttt catttcatgc aaacactcaa
    23101 aataagccat ttcaggttca taacctgctt caaccaaagt ttcaaaacct gcttgaatca
    23161 aagcactaag tccaccacaa agcacagctt gctcaccaaa aagatctgtt tctgtttcgg
    23221 ctttaaaggt tgtttctata atacctgtac gtccaccccc gatcgcactt gcataactta
    23281 aggctaaatt tttagcattt ttgctttcat cttgatggat agctattaaa caaggagtgc
    23341 caccacctag agtaaattca tttcttactg tatgacctgg tgctttaggt gctatcatga
    23401 taacatctac accttttgga acaacaattt gaccataatg gatattaaaa ccgtgtgcaa
    23461 aagctatagc cttgccttca cttaaatttg gttttatttc gacattaaaa atatctgctt
    23521 gaatttcatc aggagctaaa atcataatca catccgctat cttagaagcc tcactcacac
    23581 tcaccacttc aaaaccagca ttttttgctt taacagcact tacactacct tcacgaagtc
    23641 cgatagttac atttacgcca ttatctctta aattcatcgc atgagcgtgc ccttgagagc
    23701 caaagcctat aattgctact ttttttgatt tgattaaatt taaatcacaa tctttatcat
    23761 aatatactgt aatagccata ttcactcctt aaaaattcaa aaattaaagg tattattata
    23821 gcaattaaag tataaatttc atattttttt tataaacttt atgtaagaat tttacaaaaa
    23881 atcataaagt atcaaaagtg aaagaatttt taaacagtct tagttatggc attagctctc
    23941 acgaagtaaa caatgaattt aaacaaattt tcagagaact tttaactaat catatcatta
    24001 aagaacacaa aaacaaatac tatcttaaca atggttttgc ctttggagta cttgatattt
    24061 cgagtaaagg cacaggtttt ttacaatgct ttgatgaaag tttcaaaaaa gatcttttga
    24121 tagaaaacaa aaacctaaaa ggcgcaaact ataaagatat agtcgcagta aaacttctac
    24181 ctttaaagaa aaaacgcccc agtgcaaagg tgattttggt tctaaaaaga gccaatgaaa
    24241 cctctttaat gatcaccaaa aggtatggcc aagccgtgct tggaatgaat atcaaaacag
    24301 gattaagcac tgccttaaaa gcttctcaaa aatccttaaa agcactgcct ttagggacaa
    24361 ttttaaaaat agaaaatgaa aataacaata tcatagaagt tttaggacat atcgatgatg
    24421 aaagcgtaga tgaaaaaatc tccttagctc tttttaataa aaataacgaa tttagcgacg
    24481 cttgcatcaa agaagctcta gcaaacggcg atagtgttga tgcgagtatg tatgaaaatc
    24541 gcatggattt aagagccttg cctttttgca ccatagatcc tatacatgca aaagattttg
    24601 atgatgcgat ttattttgac actcaaaaac gagaaattta tgtagctatt gctgatgtta
    24661 gcgaatatgt ttatgcttat agtgctatag ataaagaagc aagaaatcgt ggattttcta
    24721 tttattttcc acatattgct atacctatgc tacctcgtcc tttaagtgaa aatatctgtt
    24781 ctttaaaacc tcatttagat cgcttagcgt attgttttaa aatcacactc aatcatgaaa
    24841 ataaagtcat aaaagaagaa ctttttgaag gtattatcaa ctcaaaacgc cgttttaatt
    24901 atgatgaagt tgatgaaatt ttaatacaaa aacctgattt aaaagagctt tcatggcttt
    24961 atgagctttt tgaaatcaca aaaaatttac gcaaaatgcg tcttaaaaat gcctttgaat
    25021 ttcgcaccga agaattaaga atgaatttag atgaaaattt aagtctaaaa agtacagttt
    25081 ttgaaaaaga cacgccttcg cataatttga tcgaagattg tatgctttta gccaataaag
    25141 ccgcagcaaa actcatagat ataggtgttt ttagaaatca cttaagtgct gatgtaagaa
    25201 aaatcgataa gcttttaaat gaattacgcg aattaggcat cgatgtaaat tttaagccca
    25261 atcttcctga gctcatacgc gacatacaag ctttagctga tgagttaaat ttaagagcag
    25321 aagtagataa actcatcatc aaagcacaaa aaaaagcgga atattctagc gtcaatgcgg
    25381 gacattttgg cttaggtttt gataaatact cacattttac aagccctata agaaggtatt
    25441 ctgatcttat tttgcacaga cttttaaaag ccaagcaaaa aaacgatgaa aaacttttta
    25501 attatctact tttaaacata gaaagcactt gtgagaatct tagcacactt gaaagagagg
    25561 cggataaggt tgcttttgat tttatggata gaaaatttgc tagatgggca gctaaaaata
    25621 taggcaaaaa atttaaagct ttagttgtcc aaaatgatgg agtttgcata gccaaactag
    25681 atgatgaaat caaaggagcg gatataatcc tttatgatac gcgtgtaaat ttgctagaaa
    25741 atgttgaagt acaaatcatg gaagcggata tagttatggc aaaaatttat gctaaaatca
    25801 cccaaagact tataaaggaa gaaaatgtat agaaaagagc ttcaaatctt actttctaaa
    25861 gattcaatac ctaatttttt ctttctttat ggagcagata attttcaaag cgaactttat
    25921 gctgaattta taaaagaaaa atataagccc gatgaaactt tgaaactttt ttttgaagaa
    25981 tacaacttca ctcgtgcgag tgatttttta agcgcaggat cgctttttag cgaaaaaaaa
    26041 ttactagaaa tcaaaacttc taaaaaaatt ccaacaaaag atcttaaagt tttagtagat
    26101 ctttgtaaaa acaatgcgga caatttcttt cttttagagc tttatgatga aagttctaaa
    26161 caaagcgata tagaaaaaat tttctctcct cattttgtaa gatttttcaa agctaacgga
    26221 gctaaagaag gcgtggaact tttaagcata aaagcaaaac aactaggggt tgaaatcact
    26281 caaaatgctt tatttactct ttttacaagt tttgatgaaa acttatatct tgctgcgagt
    26341 gagcttaata aatttagtgg tttaagagta gatgaaaaaa ccatagaaca atactgctat
    26401 agtttgaata caggaagttt tgaaagcttt tttgagaaaa ttttaaaaaa acaagacttt
    26461 aaaagcgaac ttgaaaaaat tttagataat tttaatgaaa ttgctttaat caactctttg
    26521 tataattctt tttatcgttt gtttaaaatc gcactttatg ctaaagtcaa tggtaaaatt
    26581 gactttaaag atcttttagg ctatactcca cctcctcaag tgggacaaaa tttaagctct
    26641 caagccttta gtttaaaaat cgaacaatat aaagaaattt tcactctttt gcttaaaagc
    26701 gaatacgagc ttaaaaccaa ttctaagctc gtaaaaaaag aatttttgat ttcaaatttg
    26761 cttaaacttg caaggatttt gaaaagctaa atagtaaaat tataaaaatt aaaatcactt
    26821 tttttattat aaaactaaaa aatgttgcta taatactttt aataaaaaca aaaggaatga
    26881 aaatggattt tgaaaatcaa ttaaatgcta tcgttgaaac aatagctgaa cgcaaaacac
    26941 ttgtcaatac tgaagaagct acaaaaatga cttttataat gcctttttta aaaacattag
    27001 gttatgatgt ttttaaccct agtattgttg tgccagaata tacagcagat ataggaacta
    27061 aaaaaggcga aaaagtggat tatgctattt tcaaagattc aaaacctttt attttaattg
    27121 aagctaaaaa tcatactgaa aatttagata atcataacaa tcagcttgta agatatttta
    27181 acactaatcc tagtattaaa tttgccattc ttaccaatgg tattgaatat agatttttta
    27241 cagatattga acaacaaaat cttatggata aaataccatt tttagttgtt aatcttgaaa
    27301 aacttaaacc tagagatatt aaagatctaa aacgttttat ttgcactgac ttaaacttag
    27361 atgaaattct aagcattgct atggagaaaa aatattaccg aagtatacaa gaaattttta
    27421 aaagtgaaat agaaaatcca agcgatgaat ttacaagttt ttttgctaaa caaatgacag
    27481 aaaaaagaat gactagtgct gttttagaag aattcaaaaa ttacattaaa aaatctttta
    27541 aagaaattat taatgattta gcttatgaaa aaatcacaag cattaaaaac aatcttcaaa
    27601 acataaacga tgatgaaaat gatgagcaaa ttgatgaaag taaagatatt gtcacaacag
    27661 aagaagaatt acaaggtttc tatatagtaa aatcaattct tgctagtgtc agcgccaatc
    27721 ttgaagatgt aagttacaaa gatactttaa gctattttag tattttatat caaggcaaag
    27781 ttactaagtg gatatgtaga ttatatttta atacaagcaa aaaatctatt agttttccgg
    27841 atggagcaag ttataatata gaaaaattag aagatattta tcaatataaa gcagatatta
    27901 tcaaagcatt tgaaagcaga aagtaaaatc atttattgat tttactttca ctccatcaca
    27961 agtcgcataa gatgtaagtc ctcaccttgt gtgattttat attctatact ttgacattta
    28021 ggacacttaa aaacattttc ttctaaaata cttgtttgat cgcattttaa gcataaaatt
    28081 tcaagcggag caagttctat aaaaagttta gcatttttac aaatatttga gttttcttta
    28141 aaagtttcaa aacaacgctt aaaaagatca acttctatac cgcttaaacg cccgattttt
    28201 acataaattt cttgcacatt acaagcctta ttgtttaagg cattttcttc acaaagttcg
    28261 attaaagatt ctactatact taattcgtgc attagcaaat tcttggtaaa agttcgcctt
    28321 tagggctttc taaaaagcgt tttgctccat aagcgttttg taagatcacg cgtgcttttt
    28381 tctcttctaa aacttctcct ataatactcg catttacatt gtattttttt agaatttcca
    28441 aggcttttaa cccatcttct ttttccacac aaagtataaa agtgccttca tttgcaagct
    28501 cataggcttc ataaccaaaa agctcgcaaa gtcctaaaac ctcatcttga acgatgattt
    28561 tttcttcaaa gatcaaaaga tcatttccac tttgctttgc ccactcattt aaaaccgcac
    28621 taagtccccc acgagtagca tctctcattg ctacaacctt tatatctttt tctaaaagct
    28681 ctaaaacctc tttatctaaa gccttacaat cacttttaac attagcttct aactcatttc
    28741 ttttgattaa aacactagct ccatgccttc ctatatcacc tgaaagaagt atgctaagcc
    28801 ctgctttgat atttttactt tcttttttag aaataatttc acctaaggct gtagtgttga
    28861 tataaatttc atctgcttta cccttaggaa caactttagt atcgccacaa actaacataa
    28921 ctccacattt ttcacattct tctttaatgc tttttaaaat gcgttctagt ttttctagct
    28981 caaaaccttc ttctaagata agccctaagc ttagatattt tggcttagca cccaccatca
    29041 aaacatcatt aatagaacca caaacacaaa gtttacctat attaacctct tcatctaaaa
    29101 aaatcggact taaaacaaaa gaatccgtgc ttaaagccaa atttcccaaa atcgctgcat
    29161 cattatttgc gtttaaaatt tcattatcaa agatcttaaa aagcttagtt aaaagctcat
    29221 tcatctcttc tccaccgcct ccgtgggcta aggaaatatt tttcatgcat tcacctttga
    29281 gtatttataa tacgccgcac aagcaccctc gccagaaacc atacaacttc ctataggact
    29341 tcttggcgta caagccttgc caaaaacttt acaatcataa ggcttggcca aacctcttaa
    29401 aatttgccca caaatacagg ctttgctttc atttttgctt tgcaccgcgc aatcgaattt
    29461 tttactcgca tcataagcgc taaattcttc ttttaactcc aagcctccat ctttaataag
    29521 tcctaagcca cgaaattcaa aatcacacac cttaaagtat ttttttacta aattttgtgc
    29581 tttaacatta ccttctttac ttacggctct tttgtattga ttatacactt taaaagtgcc
    29641 ttcattgctt tgttttatga tatttaacac actttctaaa atatcaactg gttcaaaacc
    29701 actcaccgct ataggggttt taaactttgc tgctaaaggc tcataaatac cataacctgt
    29761 aatcacactc acatgagaag gacctaaaaa agcattgatt tttacatttt catcattcat
    29821 gatcgcttct acaggtgctg gaactgtgat atgattgata tggaaaaaga cattatttat
    29881 tttctcttct ataagctttt gaagaagtaa agcactcata ggcgtagtgg tttcaaaacc
    29941 tatagcaaaa aagatgatat ttttgtttaa attttgctta gcaatttcca aaacctcaag
    30001 cggagaataa agcgctctaa catcagcccc tttagctctt aaatccagta aagaaatttc
    30061 acttccaggc acccttaaaa gatctcctaa agtacaaaaa atcgtatctt tcatagaggc
    30121 taacttgata gctgtatcaa tgcgaactct tggcataaca caaacaggac atcctggccc
    30181 atggatgaag ttaatttcct ttggcaaaat agaaggcagg gcatatttca tgatgctatg
    30241 cgtatgccca ccgcaaattt ccatgatgtt gataggattt ttaagttctt gttctatgag
    30301 tttttttaaa gctaaaatgc tttttttatc tctaaattca tcgatgaaat tcatttaaac
    30361 ctaaatcccc ctcatcactt tttatctctc cactattcat tttttctact atttcttgat
    30421 aggttttaat gctttctagt gcagcttctt tgtcgatttt ttccatggca acgcctacat
    30481 ggattaagac ataatcgcct tgttttaaag gctcatcaat caaatctaaa ttcacttttc
    30541 ttttcacgcc taaagtttgc actaaagcat tgtttaactc atcgatttct aaaatttcag
    30601 aaggtataga caaacacatt aaaaaagctc ctttttaagt ttaagcacct tataccaaag
    30661 ctccatattg gtgtcatttt ttgcatcaag ggtgataata tctgctctag gatttaattc
    30721 tttaatcaac ctagtcgcct ctttaacatc aaaatcaaaa tgatgagcta aatctgcctt
    30781 tgtgattaaa actatatcag cctttttaaa catcacaggg tatttttgcg gtttatcact
    30841 tccttcagtt accgaaagca aaaccacatt taaatgctct cctaaatcat aacttgcagg
    30901 acagactaaa tttccaacat tttctataaa aagcaaatcc acatcatcaa tggctaaatg
    30961 atgcaaagcc tcatgcacca taaaagcgtc caaatgacag ctttgccctg tagtgatttg
    31021 atacgctaaa gctccagcat tttttactct tatagcgtca ttattggttt ccaaatcccc
    31081 ttcaatcaca gcgattttaa gctcattttt caaagccttg atcgtgcttt ctaaaagcgt
    31141 agtttttcca ctacctggag aactcattaa attgatacaa agcgtgttgg tttcattaaa
    31201 atgtgcccta ttgtgcttag cttcttcatc atttttgctt aaaattttag aaatcacttc
    31261 tatggtttta ctttctttta agcttggatt ttcatggtgg tgatcatgat gatgatcatg
    31321 cgtatggctt gaatttatag aacagccgca atctttacac attttctttc ctttatattt
    31381 tttgtttcat tttaacctta aaagcattaa aaaattatga gtttttagaa tatttgcttt
    31441 atttttctaa atttaaaaaa tgtaccattt gtcctaaggc tatggagcta tcattgcaag
    31501 gatattttaa aggtacaaaa aaatcaaaat ttttagcttt taaaatttca agcaaggttt
    31561 tgttttgaaa aactcctcca cttaaaagca cttttaaatc ataatctttg ctaaaatcta
    31621 tgataaaatt tgctaaggca ttaaacatac ctgtaattgc cttagttttt tcatcttgca
    31681 aagcccctag gattaaattt ttaaaattaa cctgcccttt ttctacaaaa agcttataag
    31741 aaaaatcaag atttttatca taaaaagctt cacacattaa gccaacttga gcttcataag
    31801 aacttttttc taagttaaaa acaatacttc caaaagcatc gataatgcgt cctaaagaac
    31861 ttgtttgtaa gttagaatga gaataaattt ttttaagatt tttaagttta atttttggaa
    31921 tttttgctaa aaaatcctta gccttatctt ctaaatcata atgaaaaata agacttagag
    31981 ccaaattttg tatattttta atatcactat ttataagagt gaaattttca aaatgtgcaa
    32041 ttctttcata ttcttttaaa tttcctacaa aaacttctcc accccaaatt ttaccatctt
    32101 cgccataacc tgttccatca caaataaaag ctaaagcctt ttcatctttt gcaaaatttt
    32161 cttcgtattc aaaataagcc gcacaaaaat gcgcataatg atgagaaatt ttaatccttt
    32221 cttcaaattc ttttgcatag ctaaaatgcg ggtgtttatc gcacaaaatc gcatcaaatt
    32281 tcaaatcata attttgttta aaaaattcta aaagtttaaa aaatctctca tgcacatcaa
    32341 gacttttcaa atcccctata taaggagaaa ttaaaagttt attttcataa aaaatcacaa
    32401 attcattttt aagttccgca cccaaagcta aaaaagtgcc ttttttatta aaatttcttt
    32461 ccaaataaaa gggatttaaa ccccttgaag tgcgtaaaaa catagttttg ccatttacca
    32521 cttgagctat gctgtcatca cttgcattga taatttccct atcataatcc aaataaaaat
    32581 caaaaacttt atcaagtttt tgacgcaaat taaactcatc tttaatgata ctttctccgc
    32641 ttaaatttgc actcgttgct acaaggcttc ctttaaaata ctcaaaaagc aaaagatgta
    32701 aaggtgtata agctaacata atgccgattt tatcaacatc aggagcgatt aaagaaaagg
    32761 ctttttttgc ctttaaaatc acaataggag ctaaaacccc accaagcaaa gcttcttctt
    32821 tttcatctat aaaggcaagt tctttagcac tttgtaaatc tttacacatc aaagcaaaag
    32881 gttttttagg gcgatttttt ctaagtctta gagtttttaa agcttcttca ttaaaagcat
    32941 cacacatgag atgaaaaccg cccatgcctt taatggctaa aattttacct tcctttaaaa
    33001 acttcgcact ttgtataaaa gcttcttgat ctttggctaa aatttcaccc tttggatttt
    33061 taagaaaaac attgatttta cacttaggac aactaatagg ctgggcatga aaacgcctat
    33121 ttttaggatc ttcgtattcg cttttacaaa actcacacat caataattct tgcatggaag
    33181 tatgggctct atcataagga agacttttta taatactaaa gcgtggccca caatgtgtgc
    33241 aagtgataaa gggatacaaa aagcgtggat ttttttcatc aaaaaattct tttttacact
    33301 ccttacaaag cgcaaaatcg cttaacatag gcgtgctttt tgtattctct aaagaaggag
    33361 taatgctaaa attttcatag tttgaaatag aaatttgcgt gattataagc tgatctattc
    33421 ttgctaaagg cgggagatga ttttttaaat tttctatgaa attttcacat tctttttgag
    33481 tgcaagcaag gatgatttct accccaaaac catcatttct tacttctcca aaaagctttg
    33541 atttcaaagc tagttcataa actaaggggc gaaaacccac cccttgaact agacctgaaa
    33601 ttttgatctt atatcctaag tggcacatcg cttaactgac aatttttaag atgttttaaa
    33661 gtatttttaa gtaaagattt atgttcaaac aaagagccgc ttataagcgc taagtcgctt
    33721 tgctttttct ctcttaattc atcataagta tcacgcaaga aataagccaa actctcaacc
    33781 gctccataag cgatattagc actatccaca cctgctaaca taaaactcat agcagatctt
    33841 aaagttcttg tataatcaaa acttttatct tctttcaaac gataatcaat ctttactcca
    33901 cgaggcattt ttgactcatc agcgattttt aaaagctcgc taacactctc ttgtaaattt
    33961 ttacccaaat ttagcactct tcctactaag ccaaacaagg aataaaaatt gttttgaagc
    34021 tcaaaatttt catctaaaag aggaaattcc ttgctaaaat tttctaaaag ccttgcacca
    34081 atttcatctt ttttgatctc ttcataaagc tctttgctgt gttttggtaa gcaaagttta
    34141 agcaaattaa gctctttgtt gataagcaaa atatcttcat catctttact tagctctaaa
    34201 ataaaagcct tttctttata acggcttaca agataagaaa ttcttgccat atttttatct
    34261 tctttagaaa aaataagctc tcttgcctta gcattgataa attcaaagcc ttccaaaacc
    34321 accacttgct catctaaagc actgatataa aaatcttttt gatattcttc tatctttttt
    34381 acgcttaaaa atttatattc attttcaaaa agttttaaac ctaaagcaaa acaaaacaaa
    34441 tccctagcaa gtctgatttt aaaatcatta aaatcaagat tgtgattttt tctaaatatg
    34501 gcattaagcc ttagcttcat caaaggtttt tccaaacttg caagaagttt taaattttca
    34561 tttgaacaaa caaaaactga atttatagct ttaatatcac aaggaagtaa aaaatctcct
    34621 ataaattcgt tcttaaacaa agaaaattca taaatgccat ttttatcttt taaataaatc
    34681 tttttttctt gacttaacaa atcaaaagca agatttaaaa aagtattgaa attttcttca
    34741 ttgatttttt caaattctga taaattgctt gaaaattcac actcacaaaa cacaccccat
    34801 tcatttttgt ttaaaagttt tttttcttga taggcattag aatttaaatg agtaatataa
    34861 gaaaattttg aaaattcttt atcttctggt atacaagggt taaaatcttg tcccgctttt
    34921 acatcaaatt ttttcaaaaa aacgctatga ctcattaaat tcaaagaatc acaaaaagtc
    34981 tttaaatttt cttcatctgc atcgatagaa aaatgataag tattttcttc tttactaagg
    35041 gtgtaattat aatttttcgc ataaaaacgc aataaatatt caaaaatatc attatccgca
    35101 ttataaataa aatcaaaatc caaagtcata ttatgccttt tttgaaaaat aaactataaa
    35161 tataacattt ttaacttaaa aattctttct ctctttgcct aaaatcactc ataaaatact
    35221 caataaaatc gtaaaattct ttgctgtgat tagggaattt taagtggcat atttcatgca
    35281 aaatcacata ttcaatagcc cttaaactct tttgaatgag ttttaaattt aaattaatat
    35341 aagctttatt gtgattacat gaaccccaac gcgttttcat atttttaatg cttaagtgcg
    35401 tgtaaaataa acctgttttt tgactccatt ttttaagata aaaagtaaaa atctttttag
    35461 cattttgtct taaaaataaa tctaattttg ctttattttg acaaattatt ttatctttat
    35521 caaaataagt ttttttgaca ttttcatcaa aaataatttt atatttttta gctaaaaaga
    35581 ttaactcatc atcttttaaa actttttttt caaatctttt ttttgcctca ttcatccaag
    35641 aacttgattt atctaaaaac tcataaacac ttttaaaggt gcaaaaataa ggaatgctaa
    35701 gaacaaattc acccctttca ttgatcctta atcttaaagt ttttatgcgt tttttagaat
    35761 aaaaatagca ctcatcttta taaataaaag attttaaact agagctttgc cttgccattt
    35821 tttacttttc catctgtatg aatttaccat tccacgcaaa aactcatccg cacaaaatcc
    35881 tatccaaacc cctaaaattc caagattaaa atgaaaacaa agcacataac ccacaggtaa
    35941 agataccccc atcataaaaa caagtccact aaaaaatgga aacttagcat cgccacttgc
    36001 gcgcaaggaa ttaaccataa ctatattaaa agttcgtgaa atttcaagaa agattgaaag
    36061 agcaaataaa ggtatcatta aattttttaa ctcttcttta agccctaaaa tttgcatagt
    36121 aaaatcttga caaagatagt tcaaaagcgc tactaaagca ctcgctatta cgctaaaata
    36181 taaagcacgc caagcatgtt tataagcgat attttcatat ctagcaccga ctaatttacc
    36241 tactataatt tcattagcta tgctcgtagc ttgtcctata agcatgataa gcattgaaat
    36301 ttgaaaataa atcgtttgta cactcaagct tgcttcacct aagcttgcta caaaagcaaa
    36361 ggctatagtg tattggacta tccacaaaag attttcccct gctgaaaatc cgcctatatt
    36421 taaaaccttt tttaatacct ctttttcaag ttttatcatt tctttgattt taagatgaat
    36481 tttaagttta taaaaaagta tcacaagtaa agccactata gcaacaatac gggcaaaaat
    36541 attactaagc cctactccaa aaagttctga ttttgtataa tgcaaaacat aataatttcc
    36601 acaaatcacc actatatcca tcaaaaaacc tataagcatg acccaataag ccatattata
    36661 aacccttaca atagcagcta aaacaattcc tatggcatca aaaaacaaac aaattgcaag
    36721 catatgtaag taaatttcgc tatctttgag caattcttgt gggattttta aaagataaag
    36781 caaatactcc ccgtgccata aaataagcac accgcataca aagcctaaaa gtgcatttaa
    36841 gaacaaactt tgatgaatca cttttcttgc taaaacatga tcttttgcac caattgcttg
    36901 tgcgatcacc acactacaac ccacacttaa aaatgaaaaa atagtgataa aaagatctaa
    36961 aatttgattt ccagccccca tagcaccgac aagaaaatta gaataatgcg acaccatagc
    37021 ggtattgata atcacggtta aatacttaga aagcaaatcc caaaatatag gaaaactaag
    37081 tcttgttaaa gagagttgtt tttttgccat gatattatct tatctctttt tttaaata
//
LOCUS       DAPIWJ010000004        35457 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.004, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000004 DAPIWJ010000000
VERSION     DAPIWJ010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 35457)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35457)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35457
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.004"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..974
                     /locus_tag="RJ259_000138"
     CDS             <1..974
                     /locus_tag="RJ259_000138"
                     /inference="COORDINATES: protein motif:HMM:NF019310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7365886.1"
                     /translation="FNMEKSLLFHFRRIGVEFIIFSVYAVFSISWAATGSLMPLISND
                     LALNTQQATLITSMIVVAKIFGASFTAFLVYKFGLKKGYFLGCILMSSGIFLSFVDSY
                     SGILIIRFLTGLGSACALVCLVPIAQQWFEKKALHFVISFNITSNLVGITLGLVLAES
                     ISNYFGNWRDSLSFYAWINLILLILWLFVGKDENKKEEKKNNAKDLIYALKSRVTWGM
                     IIFYIGPILFLNSLFTFLPTFYAQYAGFSKELADFAKKEIPALANFAIIFGPYLGLFF
                     KRKNISFKIMLLSGGACIFICGFCMLFLQNLVLIQIFAVLSGIFYSM"
     gene            1041..1229
                     /locus_tag="RJ259_000139"
     CDS             1041..1229
                     /locus_tag="RJ259_000139"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7365887.1"
                     /translation="MSAFWSITFVILSFNLWVVSWSVDKTHSFTLGFVYIFALIFISA
                     ILAQFVLPRREKFIQGEK"
     gene            1231..2382
                     /locus_tag="RJ259_000140"
     CDS             1231..2382
                     /locus_tag="RJ259_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDV7365888.1"
                     /translation="MNLIPEILDLQGEFEKIRHQIHENPELGFDELCTAKLVAQKLKE
                     FGYEVYEEIGKTGVVGVLKKGNSDKKIGLRADMDALPLQECTNLPYKSKKENVMHACG
                     HDGHTTSLLLAAKYLASQNFNGALNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGW
                     HNMPFGSDKKFYLKKGAMMASSDSYSIEVIGRGGHGSAPEKAKDPIYAASLLIVALQS
                     IVSRNVDPQNSAVVSIGAFNAGHAFNIIPDIATIKMSVRALDNETRKLTEEKIYKICK
                     GIAQANDIEIKINKNVVAPVTMNNDEAVDFASEVAKELFGEKNCEFNHRPLMASEDFG
                     FFCEMKKCAYAFLENENDIYLHNSSYVFNDKLLARAASYYAKLALKYLK"
     gene            complement(2386..3126)
                     /locus_tag="RJ259_000141"
     CDS             complement(2386..3126)
                     /locus_tag="RJ259_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaaA family protein"
                     /protein_id="HDV7365889.1"
                     /translation="MKILFSPSESKNENCVKNPINENSFIFKELFPYRMEALKHYEEF
                     IKNASLQNLQELFGIKNENEIDKFKHDLKQAPTQEAILLYTGVSYEYLNFKALDKKSQ
                     AYILENTLIFSNLFGIVRANDTLPFYKFKQGAKIGNFAIEKFYKEHFSKALDEYLENE
                     EILDLRAGFYDKFYTPKKKFYTYKFVKNGKVISHFAKAYRGILLSISAKNQVKNNKEL
                     LANLPSNLKLKEIQIKGLKEEIVLEILD"
     gene            complement(3218..4336)
                     /locus_tag="RJ259_000142"
     CDS             complement(3218..4336)
                     /locus_tag="RJ259_000142"
                     /inference="COORDINATES: protein motif:HMM:NF027978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="JlpA-like lipoprotein"
                     /protein_id="HDV7365890.1"
                     /translation="MKKGIFLSIGIAVLFSACGNSIDEKTVKKYENQLNQTVKQEIAS
                     LSQDSGIKIEFSDFKCNADGDFIACLSPNFKTLTKDNNDEYQELFQAKNIKIRSNEIY
                     KGEANASISIKEYYNDLFKNQKSIQSNLVFEDFKLGEKVVSDINASLFQQDPKISSFI
                     NKLSSDSYTLSFDNSINKQENNYLDNLDIKFYNAKLNFNTNLNINLKEDLLNYLDSKG
                     IKFNTQTLVMDKQAINELLNIANYEQASDFSNTIQKYIILNNFKIDSTLKTEGVFSSY
                     IATAKENLQTLKAQSQNEEQALIFDKALAILNNITQNDDYKLNLDLKFKNIPVSDYST
                     QGIDSIEKLSINNQDATEALKIILPFIMFSMLMGGASF"
     gene            4555..5394
                     /locus_tag="RJ259_000143"
     CDS             4555..5394
                     /locus_tag="RJ259_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine ABC transporter substrate-binding
                     protein"
                     /protein_id="HDV7365891.1"
                     /translation="MKKILLSVLTAFVAVVLAACGGNSDSKTLNSLDKIKQNGVVRIG
                     VFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKV
                     DIILANFTQTPQRAEQVDFCLPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTAD
                     AYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELG
                     NKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIEG
                     GKI"
     gene            5435..6682
                     /locus_tag="RJ259_000144"
     CDS             5435..6682
                     /locus_tag="RJ259_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7365892.1"
                     /translation="MQKKYKNIIYASLGGILEFYDFVLFAFFLDIFTKVFFPQNDAFW
                     MQINAYIAFGAAYLARPFGSIVMAHFADRYGRKNIFYISMLLMVLPSFALAFLPSYES
                     IGIFATLILFTIRILQGLAVGTEVSGAWIYVSEFVKGRQIPLALGFISATLTIGLLLG
                     NIATLGIRSYFTPEEVQSYAWRIPFIIGGFFGILALFLRNKLSETPEFIKVQNEKKIL
                     SFPLFEALKTHKMSMLVCFLMTMVLTSGVATLMILPKYFESLLAMSKTSALWVQNFAI
                     LAVIFGALFQGFLASKWGSYRICFIFSIAFIIFGVLFSFYDENFLFYFLLACFAQGII
                     TFAPVFMTQIFKSELKFSGLSFAYNISYAILGFLTPFIVNAFYKEYLGIYLAIVGSCS
                     LLCVFLLKRVFARSKIKELSIVF"
     gene            complement(6665..7933)
                     /locus_tag="RJ259_000145"
     CDS             complement(6665..7933)
                     /locus_tag="RJ259_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HDV7365893.1"
                     /translation="MQNVIENFKQLCKIPHCSYETEQMKEFLSSYAKDKGFKVSVDKA
                     GNIHAIKGKPKICLQSHYDMVCMGDAPNLEVYEENGFLRAKNSSLGADNGIGIAIMMS
                     AMAEFENLECLFTNDEEVGLMGVNSLEHTLESKMLLNLDHESDDEIMIGCAGGVDIEA
                     SLSFNTLRKKGKIYELCAQNFKGGHSGINIIRNEKSSIKEMAKFIQENEGEIISFEGG
                     ERINSIPKHAKALVHFKNEVKSNDWIKCEFKEENEFEICDQSKKLLSLINSFTHGVRA
                     YDENLGIVQTSINLATLRMQDKQIKFALFARSNILDGLKQVEFETLEFFKAFDFKVRS
                     FNFYPPWEGKPNALSDMVFKALKKVSPNVKVSAIHAGLECGIIEKKQELLCTSIGPNI
                     HNPHSTDEHCEIASVEKISKVVFEVLKDNA"
     gene            8001..8528
                     /locus_tag="RJ259_000146"
     CDS             8001..8528
                     /locus_tag="RJ259_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HDV7365894.1"
                     /translation="MRINYKKIFNLRKLLSDPKKLFSVLIFTLVVVFIQNYIAQNSSF
                     EGKVVRIIDGDTIEVNHENKLARIRFFGIDAPELKQSFGKQSKEALSRILSGKQVEII
                     YKNKDTYGRIVAIVKLNDVDINRFLVSKGYAWADTYYSNAYTKEQENAKKNHLGLWKE
                     SNPIEPYKWRKHNKF"
     gene            8537..8710
                     /locus_tag="RJ259_000147"
     CDS             8537..8710
                     /locus_tag="RJ259_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7365895.1"
                     /translation="MKKYTLMVLLALGISGCFVNERGISNRFYDDCKEYYDGSGTYHK
                     DCPKNWVDIKMTP"
     gene            complement(8711..9289)
                     /locus_tag="RJ259_000148"
     CDS             complement(8711..9289)
                     /locus_tag="RJ259_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7365896.1"
                     /translation="MAKKDNFEEYAQLEEYASAEDISRVRAELLTCPELNTSLAGTII
                     EIDKNYAKSILITTSEMVADDQGLIFDAFIFAAANYVAQASINKEFSVIIGSKCFFYA
                     PLKLGDVLELEAHALFDETSKKRDVKVVGHVKEVKMFEGTIQVVSTDEHIFKLKRPPL
                     NTVKPTENQEQGAKINNPEAVAAALMASVGGK"
     gene            complement(9362..10252)
                     /gene="cmoB"
                     /locus_tag="RJ259_000149"
     CDS             complement(9362..10252)
                     /gene="cmoB"
                     /locus_tag="RJ259_000149"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HDV7365897.1"
                     /translation="MSRIKMQENLLEKQFLNHPLYAKIQELKALNLACNFSLGDSVNL
                     STNSQAKDEILAIAKELKPWRKGPFKIDDLFIDTEWQSFIKFNILKPFMNEISQKCVA
                     DIGCNNGYYMFKMLEFNPAKLIGFDPSIKYRLQFELINALAKTPIKYELLGVEDLPSY
                     SLKFDVIFCLGVIYHRSDPIKMLKDLKAGLNKNGVVFLDTMYIEDEREIALVPNKTYS
                     KIPNIYFVPSISALKNWCERAGFKEFEVLATKKTDENEQRKTEWIDSFSLENFLDPKD
                     KNLTIEGYEAPKRVYIRIKI"
     gene            complement(10348..12072)
                     /locus_tag="RJ259_000150"
     CDS             complement(10348..12072)
                     /locus_tag="RJ259_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HDV7365898.1"
                     /translation="MLEQSPYKEDANSKNYNNTLKVKDGVIIIDHSNTSDDNNSKTIN
                     TKKNTQKNQPNLSNDNTLKTKTPNSNTPSLKNTSKEESIHKVSFSFHITNKNINFKDL
                     GLDEQVLQEALNDYKKESISVQDLQDIANIISYYVQVSGYPAATAYIPQQELKDQIQI
                     NITLGVLGKYVVQNNSSVRDYAIESKLPNHKGEIITTKLVEDAVYKVNEMYGIQTLAS
                     LKAGDNPGETDVVIETTPSDSFVSVLFYGDNYGIKESGRYRDGASMSFNNIAHQGDSL
                     NAYLQRSDEAQTNYSISYTTFLGNLKITPSYSKRNYALGGAYKNANFIGTSENLGIDL
                     KYPLWITTYNSFYLTSSYYHKKLSNSRLNIMTIDKSSDTISFSIEGVYNGISNDSFSY
                     SANVSYGNVKDGGTTILGMSSKTDGDGFGKFAKLNVNLNNAYFFNDTFTHLFSLNYQQ
                     VVNGATLDSSETISLGDPYGVRAYNNGDGEGDNAVVASFGLRMATPLKDFYITPFYNI
                     GYSWYENDSKLYRASETNYMDAYGLQLLYNKTGNFYVKLDLARALKKYKLDDDYSSKA
                     YVSFGKYF"
     gene            complement(12130..12270)
                     /locus_tag="RJ259_000151"
     CDS             complement(12130..12270)
                     /locus_tag="RJ259_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7365899.1"
                     /translation="MLKMIKIQKVKSLLDLVKKLKNKQSLKIKNQTNTKENLNKTHYL
                     TI"
     gene            complement(12258..13897)
                     /locus_tag="RJ259_000152"
                     /pseudo
     CDS             complement(12258..13897)
                     /locus_tag="RJ259_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865998.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
     gene            complement(14266..16554)
                     /locus_tag="RJ259_000153"
     CDS             complement(14266..16554)
                     /locus_tag="RJ259_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7365900.1"
                     /translation="MEKFCFKLSIVTFLSINAFAATQANTTDNRNFNIPEHYFNDNEL
                     YDKTNSTYKKLQGINYYAKSSKQYINNITLIYNNPKPNITNINDLNFKHYLLTPDMRE
                     DEVLSFKARHGVNTAGHSIKTVRVLPFLITAKTDHADASYNKLILEQGELSSVFYLKP
                     KDTHIKNPSNSKSNQRMNFLMSSTFTHYGNASYNQTILQKDAHISMGVENTYDLALNG
                     APYLIGAIATYGDSTNNSLNIEAGSSVEFFTSLPKKDKNGNNTFDERITHLVGGLAYQ
                     GNVKNNKIFIKDANMIIHGPSKAYASLAAAHISAGYIDSGTDKNFQASKNLLDIDGFN
                     LDMYMNHDKQPLAYNSVLFADFWGGKTEQGQALDNTINLKDIKNLKKDKNNENIFAQA
                     LFNFYAGASNNGEANYNTLNIELKHPLEIANNFLGYNQHSFYGGFATKGANHNTINIK
                     NDLTTTDLSQSYKDALNIVAARTLEGSADYNKVYINNSMSTLPVYIYTAKKNILNNQD
                     FYPSSANNNEVVIKDFASFRNLTVLTEAKEASYNTINYNNVQSITDVSNIDKGSKIII
                     RALDKANHNTIDIKNYSSNAADNAYLIMAYNEAAYNKIIINDTLFGVASDKREGILSI
                     IAGLSNNAHDNTLIINNLNLDEYKNNNSIFIAPSAITGLSEAKSYNNTLYIGGNLNIF
                     KNTFIDILAGALVHYEDNYSASNAAAPSDISLSKNNRLILNTKVEARIINNFEHYYLI
                     VSNKINTTPLLKSYDAPINISS"
     gene            16697..17071
                     /locus_tag="RJ259_000154"
     CDS             16697..17071
                     /locus_tag="RJ259_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HDV7365901.1"
                     /translation="MKMRVYYEDTDAGGVVYHSNYLKFCERARSEIFFNKKVDIFDAS
                     KGHFLLAKANCNFLKPAKLGDMIEIKTKILEVKNASVEILQEIYKDEILLFKMELTLA
                     FIKNEKPARMDMQLKKLFEELF"
     gene            complement(17063..18253)
                     /locus_tag="RJ259_000155"
     CDS             complement(17063..18253)
                     /locus_tag="RJ259_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7365902.1"
                     /translation="MKKIFLIFFLSCFLLNAKEQKLVDVKPVENFYPKLSVQECNTNC
                     LFDLLESRLYLSFLSEFADQNDQFLSNVYAKLLNSITDFEKNVQKITSVKLAIIIPEK
                     TIKSYSNTIINSSIAYLLRQRAEIKVKVFLTGTEDNDKIRAALDAAQAQGYQYAIAGF
                     TLKGANELKNYSGNMKIFIPTIHKNNIQISNQNIIFGSIDYDAQIATLLSKSNANIAI
                     FSDGSALSSNLNSRILAQNNNARIYTIEGEKLDFSRLLRSQGGVNNASIFFNTPLIKT
                     ALASSQLRIYNIHPYVLLSTQINYNPTFLSLTQQGDRENFIIANSINNHDDNLVYLNE
                     IFNQSIDYNWIAYATSIGVDYFYTEFLNKKSESLFDEKIKNSQVDYKVRLMQGKQASF
                     EELK"
     gene            complement(18250..18858)
                     /locus_tag="RJ259_000156"
     CDS             complement(18250..18858)
                     /locus_tag="RJ259_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HDV7365903.1"
                     /translation="MIRSLYYLKAMGFNFVDTHTNHFEQVQNFQELKQLVSSCTLCQF
                     SKTRKFSLMEPKIKNAKLLILDVFGQKSENESGILLNSKKGEKLKHYIYQILGLCDED
                     FYFSYLFKCFCNGKFDDFSLQSCLPFFWNELKLIQPAFLLCLGEYTFKSLGFKDYHIL
                     KGEVFAYKNFFIMPSYDLDFIEKNPSYEKNFIQDLKKIKGFL"
     gene            complement(18855..19334)
                     /locus_tag="RJ259_000157"
     CDS             complement(18855..19334)
                     /locus_tag="RJ259_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7365904.1"
                     /translation="MSEFKIIDLRQEDLDILQEMIIEFAKYEDMLDFLQCTKEKLEHS
                     LLKNKFARAFLLKENEKTIGYMIYFYTFSSFWGSGGIYLEDIYIREDFRKKGYGKAVF
                     KFLGEICKKENLKRLDWVCLNDNILGINFYESLNAKHLKQWRNYRLSGENLEKLCDL"
     gene            19465..19599
                     /gene="rpmH"
                     /locus_tag="RJ259_000158"
     CDS             19465..19599
                     /gene="rpmH"
                     /locus_tag="RJ259_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HDV7365905.1"
                     /translation="MKRTYQPHGTPRKRTHGFRVRMKTKNGRKVINARRAKGRKRLAV
                     "
     gene            19596..19922
                     /gene="rnpA"
                     /locus_tag="RJ259_000159"
     CDS             19596..19922
                     /gene="rnpA"
                     /locus_tag="RJ259_000159"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HDV7365906.1"
                     /translation="MKNFDKFSTNEEFSSVYKVGKKWHCEGVIIFYLNSYEKKIAVVA
                     SKKVGKAVVRNRSKRILRALFAKFERYLQDGKYIFVAKNEITELSFSRLEKNLKWGLK
                     KLECFK"
     gene            19919..20260
                     /gene="yidD"
                     /locus_tag="RJ259_000160"
     CDS             19919..20260
                     /gene="yidD"
                     /locus_tag="RJ259_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HDV7365907.1"
                     /translation="MICLKILRFYQKFLSPLKPAACRYYPSCSEYALWQFQKKNFFLA
                     FFSTFFRILRCNPFFKGGFDYPRVSKNFYPINLCFKPIFLAEKQLCFLYIPYKNKSFY
                     LIKIIFKRTNQ"
     gene            20257..21843
                     /gene="yidC"
                     /locus_tag="RJ259_000161"
     CDS             20257..21843
                     /gene="yidC"
                     /locus_tag="RJ259_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HDV7365908.1"
                     /translation="MNNSNNIFQQKRILLAVVISFLFFVIYDYFFIPKQPLKIEQNIT
                     QKNQQNTSINNTPNIQNATTNTPSAALVSQDSVISKVQSKHFEAQIDSFGRISAFYLK
                     DRKYQNEKGEFINLVSKENSPYPLEMRFSDPSINSEAFKIPYVANASNLFVDENGSQV
                     LKLTQNLSGLKIEKDITFYPKGNYEIEVKLSKNANYFISPGYRPNIAVDSYTVHGALV
                     MDNKETIETYKDGDVEKDESANNVVMTSAFDRYYATFFYNFDKPLNVAISKDANQNPI
                     VFAYSDNEFKAGGYIGSKEHVILRSIDPRLEAVVEYGWFTFIAKPMFEFLNFLHQYIG
                     NWGWAIVVMTLIVRIILFPLTYKSMISMNKLKDLAPKMKDIRERYKGDPQKMNMHMME
                     LYKKHGANPMSGCLPILLQIPIFFAIYRVLLNAIELKAAPWAFWIHDLSVMDPYFILP
                     ILMGATMFLQQLITPMTIQDPMQAKIMKFLPVIFTFFFITFPAGLTLYWFVNNLCSLV
                     QQWVINKIFAKEHHKKTSGA"
     gene            21847..22665
                     /locus_tag="RJ259_000162"
     CDS             21847..22665
                     /locus_tag="RJ259_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Jag N-terminal domain-containing protein"
                     /protein_id="HDV7365909.1"
                     /translation="MKIEAIDLQSALTEASRSLECSVMDLEYEIIQHPRKGFFGFGRK
                     KAIIEAKAKKRILKKNPKKEFTSSKNHKPETHEPKQENKIEIKNEKNKSQKEKYTVKS
                     DEIFDSFHRESKGVRNTQDILDEIRIQLVKLLESSQFKIELSELRMYDEDCVLIRLDG
                     EDAALMIGKEAHRYKAISYLLHNWINLKYNLLVRLEIAQFLENQIQGMQLYLQSVIEK
                     IKIHGRGQTKPLDGVLIKIALEQLRAEFPDKYVGIKQNNDQRFVVINDFFKKDE"
     gene            22658..23986
                     /gene="mnmE"
                     /locus_tag="RJ259_000163"
     CDS             22658..23986
                     /gene="mnmE"
                     /locus_tag="RJ259_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HDV7365910.1"
                     /translation="MSDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRH
                     ATFTKLFNQNNEIIDEAIMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSLGAR
                     LALAGEFSKRACLNGKMTPLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTD
                     LVKTLAFVETSIDYADDDLPSDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIA
                     IVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEENFKLGTHLLRIIDTAGIRESK
                     DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDL
                     ENVFKNTQNKNFIKLSAQKDITLLKEELQNYLNSFDSEGIMVSSLDLINACKISSEAI
                     FRAKGLLEESSLEFFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK"
     gene            23997..26183
                     /gene="purL"
                     /locus_tag="RJ259_000164"
     CDS             23997..26183
                     /gene="purL"
                     /locus_tag="RJ259_000164"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HDV7365911.1"
                     /translation="MDKETIKAHKISDEEYAQILEILGREPNLLELGVISAMWSEHCS
                     YKSSKKYLNGFPTKAPWVIQGPGENAGVIDIGQGMAAVFKVESHNHPSFIEPFAGAAT
                     GVGGILRDVFTMGARVVAGLNSLKFGDIHDEKCGKHQKYLVKGVVNGISHYGNCMGVP
                     TIGGECAFDECFNGNILVNAFALGVCKSEDIFYAKAEGVGNPVIYVGSKTGRDGLGGA
                     VMASDSFNEESKSLRPTVQIGDPFSEKLLMEACLELFKTDYIVGIQDMGAAGLTSSSF
                     EMAGRSGSGMKLYLDKTPMRESGMTPYELMLSESQERMLICAKKGYEDKVIEIFKKWD
                     LDAVVMGEVTNTGKMELFWHDELVGLIPIEPLSEKAPILSRPTSEPKYLSEIKNYKFE
                     LKSSVQELFIQMLQNENINNKAFIYDQFDSSVQTNTIKADGRLGASVIRIKENGASVA
                     MAIECNSRLNYVNPKIGAALAVASAGRKVACTGAKPLAISDCLNYGNPQNPEVMWQFA
                     QGCEGIKEACKELNTPVVSGNVSLYNETEGVSIYPSPTIVSVGVLEDANKTLKASFEK
                     ENLSVYLLGESLGEFSGSMVMKIQDKKVSGSLKELDYKAELALWDLLYKANQNSLLEC
                     ANSVGIGGIAMTLAKMFAISSVGANLTSDFDDEKMIFDESASRAIIGLSKENEEAFLN
                     LAKEFGVKAYKLGVSTSQKHFKLDSIELSKAELDKLYFESFKEQIQ"
     gene            26180..26950
                     /locus_tag="RJ259_000165"
     CDS             26180..26950
                     /locus_tag="RJ259_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family molecular chaperone"
                     /protein_id="HDV7365912.1"
                     /translation="MTLVLIILVVLVFYWYYKTWGKQDFLNSATRGAKGFAKGFARGV
                     MEERMDEFKRRMNYYVIALLAKIAKSDGRVSENEAEMIKDLLDANAKDEKERAFLKAS
                     FNEHKENLSDAFYVAKDFLKEVPLPKNERFNVLRVLVFMALIDADFNAKKREILEQIA
                     KAFDIAKSELDAFIASLSNLKSTKKELSLDEAFAILELPNNADLNAVKKQYRNLAKKY
                     HPDILNANNVSEEELKIGVEKFQKINEAYEKVKKHLER"
     gene            26953..28485
                     /gene="purH"
                     /locus_tag="RJ259_000166"
     CDS             26953..28485
                     /gene="purH"
                     /locus_tag="RJ259_000166"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HDV7365913.1"
                     /translation="MRALLSVSDKEGIVEFGKELENLGFEILSTGGTFKLLKENGIKV
                     IEVSDFTKSPELFEGRVKTLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYP
                     FKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKKGQND
                     ENFRLNLMIKAYEHTANYDAYIANYMNERFNGGFGASKFIVGQKVFDTKYGENPHQKG
                     ALYEFDAFFSANFKALKGEASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIK
                     ENLVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEKALAVF
                     EGKKRIKIFTQESPFLIRSFDKYDFKHIDGGFVYQNSDEVGEDELKNAKLMSQREASK
                     EELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKAAIAKAKEMGLDLQ
                     GCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGMALYFTGVRHF
                     LH"
     gene            28584..29312
                     /locus_tag="RJ259_000167"
     CDS             28584..29312
                     /locus_tag="RJ259_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7365914.1"
                     /translation="MFKTIGFKVSAAIFVVLLISFIVMQVILNLDFKNTANKMSRANL
                     DTVSTSVFQTMRMAMNLGDPEKIKEAIEDAKSIEGISDIKIYPSKDTIDLFEMKAPQI
                     SNDKRIIEQFSNPKIQALEENVNGVVHLRLIRPLIADESCVACHANANVGSVIGVMDI
                     SHSLEGVQKDISKTSQSYIVIFTIALIFTLCVVFLMLKVVVGKPVLELLNHAKELAQG
                     SGNLKARISVKGQDEIALACGYIN"
     gene            29502..30170
                     /locus_tag="RJ259_000168"
     CDS             29502..30170
                     /locus_tag="RJ259_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002930723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HDV7365915.1"
                     /translation="MSNKANSANEKSFLLLEQMLKSLFNVANKVSTVSQNENELAKKV
                     ENMVNQAGNIQKATQMMDEIADKTNLLSLNAGIEAARAGAFGRGFSVIAEDVRQLAQN
                     SEEFLGNVAQITKELLQSINEVSAELKKNAQSVQALNDDTALLVDDANEVKLCNEDAR
                     ALVTQCTEKIKISQENIQNLLSRMQENVEVSEKNEEISKILLQVADELKIVCHNLESE
                     LNQF"
     gene            30186..30620
                     /locus_tag="RJ259_000169"
     CDS             30186..30620
                     /locus_tag="RJ259_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HDV7365916.1"
                     /translation="MKKMLQIALAATFFAGCASTSLTSSTSKGNNELVQNQLFKIEKI
                     IVNGKIFDPKNAEESPNISFENNKFYGYSGCNRFFGSYQTKADTLQIEGDRVASTQML
                     CHPMDVMDFENSFLSNFKGTFKISNENGKLVLSNDEMKIFFK"
     gene            30719..31696
                     /locus_tag="RJ259_000170"
     CDS             30719..31696
                     /locus_tag="RJ259_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agamatine deiminase"
                     /protein_id="HDV7365917.1"
                     /translation="MIKSIPEWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKVVS
                     EFQKVLLIAPKQSDFENFKDIKNVEFFKCDTNDTWIRDFGAIDIVENGRLKALDFTFN
                     AWGNKFQSELDNAVNSKLFKEKFKEELKKVDFILEGGSIDFNGEGVMLTSSHCLLNEN
                     RNSHLNKTQIDTKLKEIFGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHCICE
                     DEEDEHYLPLQKMKEELKKTGFDLLELPIPKPLYYEERRLGATYANFVFINNALIVPF
                     YKDKNDEIIAKRLSKALPNHKIIGVDARVFLRQNGSLHCSCQNRFKGLR"
     gene            31693..32580
                     /locus_tag="RJ259_000171"
     CDS             31693..32580
                     /locus_tag="RJ259_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HDV7365918.1"
                     /translation="MSLQKKATLVASLCAIVLALVKFIVGLTSGSVAVLSSAIDSLMD
                     FAISAFNFLALKKSSQKANENYNFGFSKIEALMGLLEGVFIVGVGIFIFYESILKIYY
                     KEEIKDLNSSIYVMIFALIMTFFLVLFLNYVAKKTKSLIIESDALHYKTDCLTNACTL
                     GALVLIYFTNLHIIDAIFGIVISLYTAFSAFKIIKKALAFLMDEALPKEQVDKICTLI
                     SNNPEIISYHELKTRKTPSCNYLSVHLVFCPIISLLNAHKISDEIEEGVRKMFENEKW
                     DIQIHLDPYDDAEQERQRQ"
     gene            32577..33449
                     /locus_tag="RJ259_000172"
     CDS             32577..33449
                     /locus_tag="RJ259_000172"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidohydrolase"
                     /protein_id="HDV7365919.1"
                     /translation="MKIALIQQKFHLNKEQTIKKTCEFIEEASKQGAELVCLGELHQS
                     EYFCQSENVDFFDYANDYEKDVKFWANIARKNQIVLIASLFEKRSAGLYHNTAVVFEK
                     DGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFEPINTSLGKLGVLICWDQWYPEAARI
                     MALKGAEILIYPTAIGWFDKDKDEEKQRQLNAWLGVQKGHAIANGLYVVAINRVGFEK
                     DVSGVEEGIRFWGNSFVFGPQGEELCLLDSQNECVKIIEIDKKRSENVRRWWPFLRDR
                     RIEYFTDLTKRFID"
     gene            complement(33461..34807)
                     /locus_tag="RJ259_000173"
     CDS             complement(33461..34807)
                     /locus_tag="RJ259_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7365920.1"
                     /translation="MKSCLYFTFIVLFLTACSTKNLTSLHRENLEQKNENQHYVKLEY
                     EQNVNILPQFAYDINFDAKRYKKYFFNPWHDSFKNYKGQNIFWSFPLYLNSKNTYYFF
                     NKQIIPLSWFKNAINNANIQEFGKLNQKALIIQNTIIKNLPTQRAILKNPFFENEGIP
                     FDYASDGILNTGAPVLISHFSKDKRYAFVLGEAGFGFVESKNLEFFSNDRAKIYENLN
                     FITPLKEKFAIYSEDGKFLFESRIGAIYPYYKEDKNYFYGKIGSKKYKISKKDVSKFP
                     LQFNDKNLKNQLSQVLNLPYGWGGYNFERDCSLLTRDIFSAFGLYLPRNSAAQKNSFN
                     HFDISTLSNSQKKDFLNRFGKAYLSLLYLPGHIMLYAGQITDNNIAIHNIWGLRKDAT
                     QRLLISSSVITSLEIGKNEILEDNLLLSRLKEISFINLNEQEKEQIKSYLENIQNK"
     gene            34856..>35457
                     /gene="pif1"
                     /locus_tag="RJ259_000174"
     CDS             34856..>35457
                     /gene="pif1"
                     /locus_tag="RJ259_000174"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HDV7365921.1"
                     /translation="MFDKLEKILAYDNVFLSGGAGVGKSFLTNELIKSYRKQKKLAIA
                     LGSSALSAFNIGGVTLHSFFCLGYCDDMMKLSVLDRNQKQKEKLTKLKELLKTIELII
                     IDEISMVSANVFEMIGFRLKNSQFNGKILVVGDFFQLPPVIKEKKETLFNHSYYAFSS
                     FFWQDLNFKNIKLSQPKRTQNMEFYNHLSLIRQGFLDKKI"
BASE COUNT        11981 a         4673 c         5995 g        12808 t
ORIGIN      
        1 attttaatat ggaaaaatca cttttatttc attttagacg cattggagtt gaatttatca
       61 tttttagtgt ttatgctgtt tttagtatct cttgggcagc aacagggtct ttaatgcctt
      121 tgatttcaaa cgatcttgcc ctaaatactc agcaagctac tttaatcact agcatgatag
      181 tggttgcgaa aatttttggt gcttcattta ctgctttttt ggtttataaa ttcggattaa
      241 aaaagggata ttttttaggc tgtattttaa tgagttcggg tatattttta agttttgtag
      301 atagttatag tggtattttg attataagat ttttaacagg gcttggttca gcttgtgctt
      361 tagtttgctt agtgcctatt gcacagcaat ggttcgaaaa aaaagcttta cattttgtaa
      421 ttagttttaa cataacttca aatttagtag gcattaccct aggacttgtt ttagctgaaa
      481 gcatctcaaa ttattttgga aattggagag attctttatc attttatgct tggattaatt
      541 tgattttatt gattttgtgg ctttttgtag gtaaagatga gaataaaaaa gaagaaaaaa
      601 agaataatgc aaaagatctt atttatgctc taaaatctcg tgttacttgg ggtatgatta
      661 ttttttacat agggcctatt ttatttttaa attctctttt tactttttta ccaacttttt
      721 atgcacaata tgcaggtttt agtaaagaat tagctgattt tgctaaaaaa gaaattccag
      781 ccttggctaa ttttgctatt atttttggtc cttatcttgg attatttttt aaaagaaaaa
      841 atatttcttt taaaataatg ctattgtctg gaggagcgtg tatttttata tgcggatttt
      901 gtatgttatt tttacaaaat ttagtattga tacagatttt tgctgtgtta tcaggcattt
      961 tttattctat gtagtttcca tttttcttta atttaccttc agaactaaaa aattccaatc
     1021 caaatcaaac tgcttatatt atgagtgctt tttggagtat tacctttgtt atactatcat
     1081 ttaatctatg ggtagtatct tggagtgttg ataaaaccca tagttttact ttgggttttg
     1141 tttatatttt tgctttgatt tttatttcag cgatcttagc acaatttgtt ttacctagaa
     1201 gagaaaaatt tatacaagga gaaaaataga atgaatttaa ttccagaaat actagactta
     1261 caaggcgaat ttgaaaaaat tcgtcatcaa attcatgaaa atcctgagct tggttttgat
     1321 gaattatgta ctgcaaaatt agtggcgcaa aaattaaaag aatttggtta tgaggtttat
     1381 gaggaaatag gaaaaacagg cgttgtgggg gttttaaaaa agggaaatag cgataaaaaa
     1441 ataggacttc gtgcagatat ggatgctttg cctttacaag aatgcacaaa tttgccttat
     1501 aaaagcaaaa aagaaaatgt aatgcatgct tgtggtcatg atggacatac tacttcttta
     1561 ttgcttgctg caaaatattt agcaagtcag aattttaatg gcgctctaaa tctttatttt
     1621 caacctgctg aagagggttt gggtggtgct aaggcaatga tagaagatgg attgtttgaa
     1681 aaatttgata gtgattatgt ttttggatgg cacaatatgc cttttggtag cgataagaaa
     1741 ttttatctta aaaaaggtgc gatgatggct tcttcggata gttatagtat tgaagttatt
     1801 ggaaggggtg gtcatggaag tgctccagaa aaggcaaaag atcctattta tgctgcttct
     1861 ttgcttattg tggctttaca aagcatagta tctcgcaatg ttgatcctca aaattcagca
     1921 gttgtaagca taggagcttt taatgcagga catgctttta atatcattcc agatattgca
     1981 acgattaaaa tgagtgttag agcattagat aatgaaacta gaaagctaac tgaagaaaaa
     2041 atttataaaa tttgtaaagg tattgcgcag gctaatgata tagagattaa aatcaataaa
     2101 aatgttgttg caccagtgac tatgaataac gatgaagctg tggattttgc tagtgaggtt
     2161 gcaaaagaat tatttggcga aaaaaattgt gaatttaatc atcgtccttt aatggcaagt
     2221 gaggattttg gatttttttg cgaaatgaaa aaatgtgcct atgctttttt agaaaatgaa
     2281 aacgacattt atttacataa ttctagttat gtttttaatg ataagctttt agctagggct
     2341 gcaagttatt atgcgaagct agctttaaaa tacttaaaat aaaaactaat ctagaatttc
     2401 aagcacaatt tcttccttta aacctttgat ttgaatttct ttgagtttta ggtttgaagg
     2461 aaggtttgct aaaagctctt tattgttttt tacttggttt tttgcactta tggagagtaa
     2521 aattccccta taagctttag caaaatgact gatgacttta ccatttttta caaatttata
     2581 agtataaaat ttcttttttg gggtgtagaa tttatcataa aatcctgctc taaggtcaag
     2641 tatttcttca ttttctaagt attcatctaa ggctttacta aaatgttctt tataaaattt
     2701 ctctatggca aaatttccta ttttagcccc ttgcttgaat ttataaaagg gtagggtatc
     2761 attagctctt acaatgccaa aaagattaga aaatataaga gtattttcta aaatataagc
     2821 ttgacttttt ttatctaaag ctttaaaatt aagatattca taacttaccc cagtataaag
     2881 caatatagct tcttgggtgg gagcttgttt taagtcgtgt ttaaatttat caatttcatt
     2941 ttcattttta atgccaaaaa gttcttgtaa attctgtaaa cttgcgtttt tgataaattc
     3001 ttcataatgc tttaaagctt ccattctata aggaaataat tctttaaata taaatgagtt
     3061 ttcattgata ggatttttta cgcaattttc atttttactt tcgctagggg agaataaaat
     3121 tttcatttta gccttttttg ttaatattat gaaaacatta agagcaaaga atttaatctt
     3181 gcttttaatg tttttgaagt ttttatcatt ttaaaattta aaatgacgct ccgcccatta
     3241 acatagaaaa catgataaat ggaagtataa tttttaacgc ttctgtggcg tcttgattgt
     3301 tgatgcttag tttttctatg ctgtcgattc cctgtgtgct atagtcacta acagggatgt
     3361 ttttaaattt taaatcaaga ttgagtttat aatcatcatt ttgagtgata ttgtttaaaa
     3421 tagctaaagc tttatcaaag attaatgctt gttcttcatt ttgactttga gcttttaagg
     3481 tttgtaaatt ttccttagca gttgctatat agctactaaa tacgccttcg gttttaagag
     3541 ttgaatcaat tttaaaatta tttaagatga tgtatttttg gattgtattg ctaaaatctg
     3601 aagcttgttc gtagtttgct atattaagaa gttcattgat agcttgttta tccataacta
     3661 aagtttgagt gttaaatttt atacccttag aatcaaggta attaagcaaa tcttctttta
     3721 gatttatatt tagatttgta ttgaaattta attttgcgtt ataaaatttt atatcaagat
     3781 tatctagata attgttttct tgtttgttta tggagttatc aaatgataaa gtataagaat
     3841 ccgagcttaa tttattgata aaggagctga tttttggatc ttgttgaaat aagcttgcat
     3901 tgatgtcact aacaactttt tctccaagtt taaaatcttc aaaaaccaaa tttgattgta
     3961 tgcttttttg gtttttaaaa agatcgttgt aatattcttt aatgctaatt gatgcatttg
     4021 cttcgccttt gtaaatttca tttgagcgaa ttttgatatt ttttgcttga aatagttctt
     4081 gatactcatc gttattatct tttgtaagag ttttaaaatt tggacttaaa cacgctataa
     4141 aatcaccatc tgcattgcat ttaaaatcag aaaattcaat ttttattcca gaatcctgag
     4201 aaaggcttgc aatttcttgt ttaactgttt gatttagttg attttcatat tttttaactg
     4261 ttttttcatc tatggaattt ccgcaagctg aaaacaaaac agctattcca atagagagaa
     4321 aaataccttt tttcatagtt ttctccttaa aaatttaaaa aaagattata tcttttttta
     4381 cttaaaattt aaacaatgct aaaagagagt gtgagattaa ttacattttt acacatagga
     4441 aaatcttttt agtttgtttc aaatgcatta tttataattt taagtataat taactttgca
     4501 attattatat atttttgcaa tagcttaaag cttattttta aagaaaggaa atgtatgaaa
     4561 aaaatacttc taagtgtttt aacggccttt gttgcagtag tattggctgc ttgtggagga
     4621 aattctgact ctaaaacttt aaattctctt gataagatca agcaaaatgg agttgttagg
     4681 attggggtat ttggcgataa accacctttt ggttatgtgg atgaaaaagg caacaatcaa
     4741 ggctatgata tagctttagc taaacgcata gcaaaagaac tttttggcga tgaaaataag
     4801 gtgcaatttg ttcttgttga agctgcaaat agggttgagt ttttaaaatc aaataaagta
     4861 gatattattt tggctaattt tactcaaact ccgcaaaggg cagagcaggt tgatttttgc
     4921 ttgccttata tgaaagtagc tttaggcgta gctgtaccaa aggatagtaa tataactagc
     4981 gtagaagatt taaaagataa aaccttgctt ttaaacaaag gcacaacagc agatgcttat
     5041 tttacgcaaa attatcctaa tattaaaact ttaaaatatg atcaaaatac cgaaaccttt
     5101 gccgctttga tggataaaag aggcgatgct ttaagtcatg ataatacctt gctttttgct
     5161 tgggtgaaag atcatcctga ttttaaaatg ggtatcaaag agttaggtaa caaagatgtt
     5221 atcgcaccag cggttaaaaa aggcgataaa gaacttaaag aatttatcga taatttgatc
     5281 attaaactag gccaagagca gttttttcac aaggcttatg atgaaacttt aaaagctcat
     5341 tttggagatg atgttaaggc tgatgatgta gtgattgaag gtggaaaaat ttaataaagg
     5401 gctttttgcc ctttatattg atttaggata aaatatgcaa aaaaaataca aaaatattat
     5461 ttatgcttct ttgggtggaa ttttagaatt ttatgatttt gtgctttttg cctttttttt
     5521 ggatattttt actaaggtat tctttccgca aaatgatgct ttttggatgc agataaatgc
     5581 ttatatagcc tttggtgctg cttatttagc gcgtcctttt ggttctattg tgatggcaca
     5641 ttttgctgat agatatggaa gaaagaatat tttttatatt tctatgcttt tgatggtttt
     5701 gcctagtttt gctttagctt ttttgccaag ttatgaaagt ataggtatat ttgctacttt
     5761 gattttattt actatacgca ttttgcaagg tttagccgtt ggaactgagg tgagcggagc
     5821 ttggatttat gtgagcgaat ttgtcaaagg gcgtcaaatt cctttggctc ttggttttat
     5881 ttcagcgact ttaaccatag gtttattgct aggaaatatt gccactttag gcataagatc
     5941 ttattttacc ccagaagaag ttcaaagcta tgcttggaga attcctttta tcataggagg
     6001 attttttgga attttagctt tgtttttaag aaataaactc agcgaaactc cagaatttat
     6061 aaaagttcaa aatgaaaaga aaattttaag ttttccattg ttcgaagctt taaaaactca
     6121 taaaatgagt atgcttgttt gttttttaat gaccatggtt ttaacaagcg gtgtggcaac
     6181 tttgatgatt ttacctaagt attttgaaag tcttttagct atgagtaaaa cttctgcttt
     6241 atgggtgcaa aattttgcta ttttagcggt gatttttgga gctttatttc aaggtttttt
     6301 agcaagcaaa tggggaagct ataggatttg ttttattttt agtatagctt ttattatttt
     6361 tggtgtgctt tttagttttt atgatgagaa ttttttattt tattttttac tggcttgttt
     6421 tgcacaaggt attattactt tcgcgcctgt ttttatgaca caaattttta aaagtgaact
     6481 gaaatttagc gggcttagtt ttgcttataa tatttcttat gcgattttag gttttttaac
     6541 cccttttata gttaatgctt tttataaaga gtatttgggt atttatcttg ctatagtggg
     6601 atcttgttcc ttgctttgcg tgtttttgtt aaaacgcgtt tttgcaagaa gcaagattaa
     6661 agaattaagc attgtctttt aaaacttcaa aaacaacctt agatattttt tcaactgaag
     6721 cgatttcaca atgctcatca gttgaatgag gattatggat atttgggcct atagaagtgc
     6781 ataaaagctc ttgttttttc tctataatgc cacactcaag ccctgcatgg atagctgaaa
     6841 ctttgacatt aggcgatact tttttaagtg ctttaaaaac catgtcgcta agtgcgtttg
     6901 gtttaccttc ccaaggtgga tagaaattaa aacttcttac tttaaaatca aaagccttga
     6961 aaaattctaa agtttcaaat tctacttgct taagtccatc aagtatatta gatcttgcaa
     7021 aaagtgcgaa tttgatttgt ttatcttgca ttcttaaagt agctaggtta atgcttgttt
     7081 gaactatacc tagattttca tcataagctc taactccatg agtaaaagaa tttataaggc
     7141 ttaaaagttt tttactttga tcgcaaattt caaattcatt ttcttcttta aattcgcatt
     7201 ttatccagtc gttgctcttt acttcatttt taaaatgcac taaagctttg gcgtgtttag
     7261 gtatagaatt gattctttct ccgccttcaa aagaaatgat ttctccttca ttttcttgta
     7321 tgaatttagc catttctttg atggaacttt tttcattgcg tatgatattt atgcctgagt
     7381 gtccaccttt aaaattttgc gcacaaagct cataaatttt accctttttt ctaagggtat
     7441 taaaagacaa acttgcttct atatctactc cacctgcaca gcctatcatg atctcatcat
     7501 cgctttcatg atctaaattt aaaagcattt tagattctaa agtgtgctcg agtgaattca
     7561 ctcccatgag tcctacttct tcatcgtttg taaaaagaca ttctaaattt tcaaattcag
     7621 ccatagcact catcatgatg gctataccta tgccattatc tgcaccaaga cttgaatttt
     7681 tggctcttaa aaagccattt tcttcataaa cttctaagtt tggtgcatcg cccatacaga
     7741 ccatatcata atggctttgt agacaaattt ttggtttgcc ttttatggca tgaatatttc
     7801 ctgctttatc tacactcact ttaaagcctt tatctttagc ataagagctt aaaaattctt
     7861 tcatttgttc tgtttcataa ctgcaatgag gaattttgca taattgttta aaattttcta
     7921 taacattttg cattttatct cctttgtttt gataaaatta tggcatattt tttaaaattt
     7981 aaaggcaaaa tgattaaaaa atgagaataa attataaaaa aatatttaat ctaagaaaat
     8041 tattaagtga tccaaaaaaa cttttttctg tattaatctt cactcttgta gttgttttta
     8101 tccagaacta tattgcccaa aattctagtt ttgaaggaaa agtagttaga attattgatg
     8161 gagatactat agaagttaat catgaaaaca aactcgctag aataagattt tttggtatag
     8221 atgcaccaga acttaaacaa agttttggaa agcaatcaaa agaagcttta agtagaattt
     8281 taagcggcaa acaagttgaa attatttata aaaataaaga tacttatggt agaattgttg
     8341 ctattgtaaa gcttaatgat gttgatatta atcgattttt ggtaagcaaa ggctatgctt
     8401 gggctgatac ttactatagt aacgcttata ccaaagaaca agaaaatgct aagaaaaatc
     8461 atttaggtct ttggaaagag agtaatccta tagagcctta taaatggaga aaacacaata
     8521 aattctaagg aaaaacatga aaaaatatac tttaatggtg ctattagctt taggaatttc
     8581 tggatgtttt gtaaatgaaa gagggatttc aaatcgtttt tatgatgatt gtaaagagta
     8641 ttatgatgga agcggaactt atcataagga ttgcccaaaa aattgggtag atattaaaat
     8701 gactccttga ttattttcca cccacagagg ccattaatgc agctgctaca gcttctggat
     8761 tgttgatttt ggcaccttgt tcttgatttt ctgtaggttt aacagtgtta agtggcggac
     8821 gcttgagttt aaatatatgc tcatcggtgc taacaacttg tatcgttcct tcaaacattt
     8881 taacttcttt aacatgtcca accactttta catctctttt tttggaggtt tcgtcaaaaa
     8941 gtgcatgagc ttcaagttct aaaacatcgc ctaatttaag cggagcataa aaaaaacatt
     9001 ttgatccaat aatcactgaa aattctttat tgatagaggc ttgtgctaca tagtttgctg
     9061 cagcgaaaat aaaggcatca aaaatcaatc cttgatcatc tgctaccatt tcgcttgtgg
     9121 ttattaaaat tgatttggca tagtttttat caatttcgat aatggttcca gcaagtgagg
     9181 tgtttaattc aggacaagtg agtaattctg ctctaacgcg agatatatct tctgcagatg
     9241 cgtattcttc aagttgtgca tattcttcaa aattatcttt ttttgccata tctaaccttt
     9301 aaattctact tatctacttc aaaatatcta aaattcaata tcggcaaaaa ataaaaagaa
     9361 tttatatttt aatgcgtata taaactcttt tgggtgcttc atagccttca atggtaagat
     9421 ttttatcctt tggatctaag aaattttcca gcgaaaaaga gtctatccat tctgtttttc
     9481 tttgttcgtt ttcatcggtt ttttttgtag ccaaaacttc aaattcttta aatcctgctc
     9541 tttcacacca gttttttaat gcactaatgc ttggtacaaa ataaatattt ggaattttag
     9601 aataagtttt attaggcaca agagcgattt ctctctcatc ttctatatac atggtatcta
     9661 aaaaaacaac tccattttta ttaagtcctg cttttaaatc ttttagcatt tttataggat
     9721 cacttctatg ataaatcacc ccaagacaga aaatcacatc aaatttcaag ctatagcttg
     9781 gaagatcttc tacgcctaaa agttcgtatt ttataggagt tttagctaaa gcgttaatga
     9841 gttcaaattg caaacggtat ttgatagaag gatcaaaacc tatgagtttt gcaggattaa
     9901 attcaagcat tttaaacata taataaccat tattacagcc tatatcagca acgcattttt
     9961 gagaaatttc gttcatgaaa ggctttagaa tgttgaattt aataaaactt tgccattctg
    10021 tatcgatgaa aagatcgtct attttaaaag gaccttttct ccatggttta agttcttttg
    10081 ctatagctaa gatttcatct ttggcttgag aatttgtaga taaattcacg ctatcgccta
    10141 aagaaaaatt acaagcaaga ttgagagctt taagttcttg aattttagcg tataaagggt
    10201 gatttagaaa ttgtttttca agtaaatttt cttgcatttt tatccttgac atttgctttt
    10261 aatgctaaat tataacatta aaagctttta tggcaatata aatctcatat gcattaagta
    10321 tttgatcaaa aataaatttt taaaaactca aaaatacttc ccaaagctta cataagcttt
    10381 agaactataa tcatcatcta gtttatattt ctttaaagct ctagctaaat caagcttgac
    10441 ataaaaattc cctgttttat tataaagcag ttgtaaacca taagcatcca tatagtttgt
    10501 ttcacttgct ctatatagtt tagaatcatt ctcataccaa gaataaccta tattataaaa
    10561 aggagtgata taaaaatctt ttaaaggagt agccattcta agtccaaagc tagccactac
    10621 agcattatct ccttctccat ctccattatt ataagccctt actccataag gatctcctaa
    10681 agatatagtt tcactactat ctaatgtagc tccattgaca acttgttgat aatttaaact
    10741 aaaaagatga gtaaaagtat cattaaagaa ataagcattg ttaagattga cattgagttt
    10801 agcaaatttt ccaaagccat ctccatctgt tttagaactc attcctaata tagtagttcc
    10861 cccatcttta acattaccat agcttacatt agcactataa gaaaaactat cattactaat
    10921 gccattataa actccttcta tactaaagct tatcgtatca gagcttttat ctatagtcat
    10981 gatatttaat cttgaattac taagcttttt atgataataa cttgaagtta aataaaaaga
    11041 attataagtc gtaatccaca aaggatattt taaatctata cctagatttt cagaagttcc
    11101 tataaagttt gcatttttat aagctcctcc taaagcatag tttcttttag aataacttgg
    11161 agtgattttt aaattcccta agaaagtagt atagcttata ctatagttag tttgtgcttc
    11221 atcgcttctt tgcaaataag cattaagact atctccttga tgagctatgt tattaaaact
    11281 catactggca ccatccctat atctgcctga ttcttttata ccgtaattat ccccataaaa
    11341 caatacagaa acaaagctat cactaggggt agtttctatc actacatctg tttcacctgg
    11401 attatctcct gcttttaaag aagcaagggt ttgtatgcca tacatttcat tgactttata
    11461 aactgcatct tctactaatt tagtagtgat gatttcacct ttgtgattag gtaatttact
    11521 ttctatagca taatctctta cactagaatt gttttgaacc acatatttac ctaaaacacc
    11581 taaggtgata ttgatttgaa tttgatcttt tagttcttgt tgtgggatat aagctgtagc
    11641 agcaggataa ccactaactt gaacataata agaaatgata ttggctatat cttgtaagtc
    11701 ttgaactgaa atactttctt ttttgtaatc gtttaaggct tcttgtaaaa cttgctcatc
    11761 taaacctaga tctttaaagt ttatgttttt attggtaata tgaaagctaa agctaacttt
    11821 atgaattgat tcttctttag aagtattttt taaagaagga gtgtttgaat ttggggtttt
    11881 agtttttaaa gtattatcat tagacaagtt aggttgattt ttttgagtgt ttttctttgt
    11941 gttgatggtt tttgaattat tatcatcact agtattagaa tgatctatga taatcactcc
    12001 atcttttact tttaaagtgt tgttgtagtt ttttgagtta gcatcttctt tataaggaga
    12061 ttgttctaac atttgtatgg ttttttatta tctttagtat cactagcata aaggcttaag
    12121 atagctaaac tagatagtaa gataatgcgt tttatttaaa ttttccttag tgtttgtttg
    12181 atttttaatc tttaaacttt gtttgttttt taatttttta acaagatcca aaaggctttt
    12241 aaccttttgg attttaatca tcttgagcaa ggatttcctg ctttaaaatt atccgatact
    12301 atacaacatt accactttct tgagtactgg cttcatctat acttgcttgt ttatcatctt
    12361 cattgatatt tggatcttca tctgtagttt gtataaaaag ctgtagcaat gccaggttct
    12421 tgttgtccta tggtatcatt tgggttatta ttagaaccgt tgttgttgct attgttaata
    12481 tcacctgaat cggttccatc gtttctgttg ttggagttgt tagatcctaa atttataatg
    12541 gatactggct tatagtttgc actatatttt cattgactgt aagatgacta gttccattta
    12601 tgctcgcact tgctaaggtt ttattagaat tttctaaact agaattagta ctcgctgtag
    12661 cgatttgaag agctattgta gcttgttgta aatcactaga aactttatct acagcttgtt
    12721 ttaaacctgc aataacttta tcgccattat tacctgttat accacttaga gctgtattgt
    12781 aagctttaac tgcttcatta taagcatttg cagcagtatc gtaagttttt tgagcgtttt
    12841 cttgcccttc ggtcatttta ggaattttga gaaagaattt cctttgtttt aataatggct
    12901 tgtttagctt ttcctagatc accataagaa tttcccaata cttcctttaa agcgtttgca
    12961 aatgttgcat tattgctatc ttgagtttgt ccatataaag cagtaataaa atccatactt
    13021 tgattaatgc ttgttagttc atcagctgtt aatatttttc catctttata aaatttactt
    13081 aagtcgctaa tatcaacact agaattaaat ttcaagtcat taaatataga atttaaaact
    13141 tcatttgaga tgttatcttt agcaataaga tcgctagttt ctttatagcc tattgtgtct
    13201 gttggatctc ctcctggtcc agttaagcct ttattagatc ttatactcaa tattacagag
    13261 tcttcttttt tattgtattt gatgcaggac cacgaatgac aaatgtatca ttactataga
    13321 cattaagata gacggtattg gattgttctt ttttatttgt aaaaatgaat ttaccataat
    13381 cagtgccacc atatttcata tttgaaactt gattgcctgc catagcaact ctttctccta
    13441 ccgttatagt ttctaaattt ataacatttc ctgcattgga tttaattaca ggtgatattg
    13501 ttttaggatt tcctttaaat gctgaaagtt ttccatcttt tgtaaactcc ttcatctcct
    13561 tatcacctat tgatgaagca gacagaacaa tttttttcca cctttaccca ctactatgcc
    13621 attaggattg attaaaaaga tattattgct tccactattg agtgttccat ctataatgag
    13681 agcttttaga accatagaca atatttaaat aattttggtt agtttttcct tgtccaaaat
    13741 ttacagtttc attacttgct atattaaaac caccactaac acttatactt ccacttgttc
    13801 catgagtgaa cttaccccca cttggtaaag catagctttg tgtaaaaagt aaagaaccta
    13861 caactaaaga caaagaaagt ttatttaact ttttcatgac ttgctccttt ttgtaagatt
    13921 aagatttaag aatcttttgt ttatatttat aaaaatacaa ataaatcatt cctatcttaa
    13981 aaataggaat gatttatttt atccttgcat aaatgttttt gtcatcttga gatattcttg
    14041 cttcataaga aagcttttgt aggttcatat tttctaatct atctatagaa cttagtttaa
    14101 aatcttcttt gttttttgca ttttttcaat aaagctttga agttcttctt gatttaaaat
    14161 attagagttt tcatctataa aaccttgctc actttataag attaagattt ctttattttt
    14221 aatatagggg tattactctt tgagggtgta aagagctaat actccctagc tagaaatatt
    14281 aataggagca tcgtatgact tcaaaagggg agttgtgttg attttattgg atacaataag
    14341 ataataatgc tcaaagttat taataattct agcttcaact ttagtattta aaatcagtct
    14401 attgttttta cttaaactga tatctgaagg agctgcagca ttagaagcac tataattatc
    14461 ttcataatgc accaacgctc ctgctaatat atctatgaaa gtgtttttaa atatatttaa
    14521 attcccacct atatataagg tattattata agatttagct tcacttaaac ctgtaatggc
    14581 tgaaggagct ataaaaatag aattgttatt tttgtactca tcaagattaa gattgtttat
    14641 gattaaggta ttatcatggg cattgtttga aagtccagct ataatactta aaattccttc
    14701 tcttttatct gaagctacac caaataaagt atcattgata atgattttat tataagcagc
    14761 ttcattataa gccataatca aataagcatt atcagctgca ttagaagaat agttttttat
    14821 atctatagta ttatgattgg ctttatctaa agctcttatg atgattttag aacctttatc
    14881 tatattactt acatcggtaa tgctttgaac attgttataa tttatagtat tataagaggc
    14941 ttctttagct tctgttaata cagttaaatt tctaaaagaa gcaaagtctt taatcactac
    15001 ttcattgtta ttagcactac taggataaaa gtcttggtta ttaagaatgt ttttcttagc
    15061 tgtataaatg tatacaggta aggttgacat agaattatta atataaactt tattataatc
    15121 cgcactgcct tctaaggttc tagcagctac aatatttaaa gcatctttat agctttgaga
    15181 aagatcggtt gtggtaagat cgtttttaat gttaatggta ttatgattag ctcctttagt
    15241 tgcaaagcca ccataaaaag aatgttggtt ataacctaag aagttattag cgatttctaa
    15301 aggatgtttt aattctatgt ttaaggtatt ataatttgct tctccattat tagaagctcc
    15361 tgcatagaag ttaaacaaag cttgagcaaa aatgttctca ttgtttttat ctttttttag
    15421 gtttttaata tcttttaaat tgatagtatt atctaaggct tgtccttgtt cggtttttcc
    15481 accccaaaaa tcagcaaata aaacagaatt ataagctaag ggttgtttat catggttcat
    15541 atacatatca agattaaaac catctatgtc taaaaggttt ttactggctt gaaagttttt
    15601 atctgttcca ctatctatat aacctgcgct aatatgagca gcagctaaac tagcataagc
    15661 tttgcttgga ccatggataa tcatattagc atctttgata aagattttat tgttttttac
    15721 attaccttga taagctaaac cacctacaag gtgagtgatt ctttcatcaa aggtattatt
    15781 accattttta tcttttttag gtaaggaagt aaaaaactct acactgctac ctgcttctat
    15841 atttaaacta ttatttgtag aatctccata agtggctata gctccgatta aataaggagc
    15901 accatttaag gctaaatcat aagtgttctc aactcccata ctaatatggg catctttttg
    15961 aagtatggtt tggttatagc ttgcattacc ataatgagta aaggtagaac tcattaagaa
    16021 attcatgcgt tgattgcttt tagaattact agggtttttt atatgagtat ctttaggttt
    16081 aagataaaaa actgaactaa gttctccttg ttctaatata agtttattat aacttgcatc
    16141 agcatgatcg gtttttgctg tgattaaaaa aggaagcact ctaactgttt ttatactatg
    16201 accggctgta ttaacaccat gccttgcttt aaaagaaaga acttcatctt ctctcatatc
    16261 aggagtaagt aaataatgtt taaaatttaa atcgtttata tttgtaatat ttggtttagg
    16321 attgttatat attaaagtaa tattgttaat atattgttta gaactcttag cataataatt
    16381 tataccttgg agttttttat aagtagaatt ggttttatca taaagttcgt tatcattaaa
    16441 ataatgctct ggaatattga aatttcgatt gtctgtagta tttgcttgag tggctgcaaa
    16501 agcgttgatg cttaagaagg taacaataga aagtttaaaa caaaatttct ctataccccc
    16561 tccccgtgaa gttaaaaagc tttattaaat taagattggg cggaattttt taatataaac
    16621 taaaaagcga tatcaaagaa tttccgttgt ataatctaat gttttttaaa tgtaaaatat
    16681 tttttaaggt aaagcgatga aaatgcgtgt gtattatgaa gatactgatg cgggtggagt
    16741 ggtgtatcat agtaattatt taaaattttg cgagagagca agaagtgaaa tttttttcaa
    16801 taaaaaagta gatatttttg atgcgtctaa gggacatttt ttgcttgcaa aagcaaattg
    16861 caatttctta aaacctgcaa aacttggaga tatgatagag attaaaacaa aaattttaga
    16921 agtcaaaaat gcttctgtgg aaattttaca agaaatttat aaagatgaaa ttttgctttt
    16981 taaaatggaa ttaactttag cttttattaa aaacgaaaaa ccagctagaa tggatatgca
    17041 gttaaaaaag ctctttgaag aattatttta attcttcaaa gcttgcttgt ttgccttgca
    17101 taagacgcac tttgtaatca acttgagaat ttttgatttt ctcatcaaat aaactttcgc
    17161 tttttttatt taagaattcg gtataaaagt aatcaactcc tatactagta gcataagcaa
    17221 tccagttata atctatactt tgattaaaaa tttcattaag atagactagg ttatcatcgt
    17281 ggttattgat agaattagca atgataaaat tttctctatc tccttgttgt gttaaactta
    17341 aaaatgttgg attatagttg atttgagtgg ataaaagcac ataaggatga atgttataaa
    17401 ttcttagctg agaacttgct agagctgttt tgatcaatgg agtgttaaaa aatattgagg
    17461 cattattaac tccaccttgt gatcttaaaa gcctgctaaa atcaagcttc tcgccttcta
    17521 tggtatatat tctagcatta ttattttgag caagaattct tgaatttaga ttgcttgata
    17581 aggcagagcc atcgctaaat attgcgatat tagcatttga tttgcttaaa agtgtggcaa
    17641 tttgagcatc atagtcaata cttccaaaaa taatattttg atttgaaatt tgtatgttgt
    17701 ttttatggat agtcggtatg aaaattttca tatttcctga gtaatttttc aactcattag
    17761 caccttttaa ggtaaatcca gctatggcat actgatatcc ttgagcttgt gctgcatcaa
    17821 gcgcggctcg aattttatca ttatcttctg tgccggttaa aaaaactttt actttgattt
    17881 cagctctttg tcttaaaaga taggctatgc ttgaatttat tatagtattt gagtagcttt
    17941 ttatggtttt ttctgggata attatcgcaa gtttaacaga agtaattttt tgaacatttt
    18001 tttcaaaatc agtaatggaa tttaataatt ttgcataaac attagataaa aattgatcgt
    18061 tttgatctgc aaattcactt aaaaaactaa gatacaatct tgattctaaa agatcaaaaa
    18121 gacaatttgt gttgcattct tgaacgctta atttaggata aaaattttca actggtttta
    18181 catcgactaa tttttgctct tttgcattaa gcaaaaagca agataagaaa aatattaaaa
    18241 atattttttt cataaaaatc ctttaatttt ttttaaatct tgtataaaat ttttttcata
    18301 acttggattt ttttctataa aatctaaatc ataacttggc attatgaaaa aatttttata
    18361 agcaaaaact tcacctttta aaatgtgata atctttaaat cccaagcttt taaatgtata
    18421 ttctcctaga caaagtaaaa aagcaggttg aatcagtttt agttcgttcc agaaaaatgg
    18481 taagcaagat tgtagcgaaa aatcatcaaa ttttccatta caaaaacatt taaataaata
    18541 agaaaaataa aaatcttcat cgcaaagccc taaaatttga taaatatagt gttttaattt
    18601 ttcacctttt tttgaattaa gtaaaattcc gctttcattt tcactctttt gcccaaaaac
    18661 atcaagaatt agcaatttgg cattttttat cttaggctcc ataagactaa attttcttgt
    18721 tttggaaaat tggcataagg tgcaagatga aacaagttgt tttaattctt gaaaattttg
    18781 tacttgttca aagtggtttg tatgtgtatc aacaaagtta aatcccatag cttttaaata
    18841 ataaagactt cttatcataa atcacataat ttttctaaat tttctccact tagacgataa
    18901 tttctccatt gtttaagatg tttagcgttt aaactttcat aaaaattaat acctaaaata
    18961 ttatcattta agcaaaccca gtcgagtctt tttaaatttt cttttttgca aatttctcct
    19021 aaaaatttaa aaacagcttt tccataacct tttttacgaa aatcttctcg tatataaata
    19081 tcttcaagat aaattccacc gctgccccaa aaagacgaaa aagtataaaa ataaatcata
    19141 tagcctatag ttttttcatt ttcttttaac aaaaaagcac gagcaaattt attttttagt
    19201 aaagaatgtt ccagtttttc tttcgtgcat tgaagaaaat ctaacatatc ttcgtatttt
    19261 gcaaattcta tgatcatttc ttgtaaaata tctaaatctt cttgtcttaa atcaataatt
    19321 ttaaattctg acatttttaa ccttttaaaa ataatttcaa aatttatcaa aagaatttaa
    19381 aaattactct taatcaaaag caatttataa gtaagattaa gataaaatac aagtttattt
    19441 tataattttt taaggaaaaa tcaaatgaaa agaacttatc agccgcatgg tactccaaga
    19501 aaacgcactc atggtttccg tgttcgtatg aaaactaaaa atggtcgcaa agtgatcaat
    19561 gcaagacgcg ctaaaggtag aaaaagactt gctgtgtgaa aaattttgat aaatttagca
    19621 caaacgagga attttcatct gtatataaag taggcaaaaa atggcattgc gaaggtgtga
    19681 tcatttttta tctgaatagt tatgaaaaaa aaatagcagt tgttgctagt aaaaaagttg
    19741 gaaaagcagt ggttagaaat cgttcaaaac gaattttaag agctttgttt gctaagtttg
    19801 aaagatatct tcaagatggc aaatatattt ttgtagctaa aaatgaaatc actgaacttt
    19861 ctttttctag gttagaaaaa aatctaaaat ggggattgaa aaaactagaa tgtttcaaat
    19921 gatatgccta aaaatactcc gtttttatca gaaattctta agccctttaa aacccgctgc
    19981 ttgtaggtat tatcctagtt gttctgagta tgcgctttgg cagtttcaaa aaaagaattt
    20041 ttttctagct tttttttcta ctttttttag aattttaaga tgcaaccctt tttttaaagg
    20101 gggttttgat tatcctagag tttctaaaaa tttttatcct ataaatttat gttttaagcc
    20161 tatattttta gcagaaaaac aactttgttt tttatatata ccttataaaa ataaaagttt
    20221 ttatcttata aaaatcatct ttaaaaggac aaatcagtga ataattcaaa taatattttt
    20281 cagcaaaagc gtatactttt agctgttgtg atttcttttt tattttttgt tatttatgat
    20341 tattttttca ttccaaagca acctttaaaa atagaacaaa acattacaca aaaaaatcaa
    20401 caaaacacaa gcataaataa cactcctaat atacaaaatg ccaccacaaa tactccaagt
    20461 gcggctttag tttcgcaaga tagtgtgata tctaaggttc aaagcaagca ttttgaagca
    20521 caaattgact cttttggtag aatttctgct ttttatttaa aagatagaaa ataccaaaat
    20581 gagaaaggag aatttataaa tcttgttagc aaggaaaata gtccttatcc tttagaaatg
    20641 cgttttagtg atccaagtat taactcagag gcttttaaaa ttccttatgt tgctaacgct
    20701 agcaatcttt ttgttgatga aaatggaagt caagttttaa aactcactca aaatctttct
    20761 ggattgaaaa tcgaaaaaga tattactttt tatccaaaag gaaattatga gatagaagtt
    20821 aaactcagca agaatgcaaa ttattttata agtccaggat atcgtccaaa tattgccgta
    20881 gatagttata cagttcatgg tgctttggta atggataata aagaaaccat cgaaacttat
    20941 aaagatggag atgtagaaaa ggatgaaagt gctaataatg tcgtaatgac ttcggctttt
    21001 gatagatact atgcaacttt cttttataat tttgataaac ctttaaatgt ggcaatcagc
    21061 aaggatgcta atcaaaaccc tatagttttt gcttatagtg ataatgaatt taaagcaggg
    21121 ggctatatag gctctaaaga acatgtgatt ttaagaagta tagatccacg ccttgaagca
    21181 gttgttgaat atggttggtt tacttttatt gctaagccta tgtttgagtt tttgaatttc
    21241 ttgcatcagt atataggaaa ttggggttgg gctatcgttg tgatgacttt aattgtgcgt
    21301 attattttat tcccgctaac ttataagtct atgatttcta tgaataaact taaagatctt
    21361 gctcctaaaa tgaaagatat tagagagcgt tataaaggcg atccacaaaa aatgaatatg
    21421 cacatgatgg agctttataa aaaacatggt gcaaatccta tgagtggttg tttgcctata
    21481 cttttacaaa ttcctatttt ctttgctatt tatcgcgttt tgcttaatgc tattgagcta
    21541 aaagcagctc cttgggcgtt ttggatacat gatttatcgg taatggatcc ttattttatt
    21601 ttgcctattt taatgggtgc aacgatgttt ttacaacagc ttattacacc tatgactata
    21661 caagatccta tgcaagctaa gattatgaaa tttttaccag tgatttttac ttttttcttt
    21721 atcactttcc cagcaggact tacgctttat tggtttgtaa ataacctttg ttctttggtt
    21781 caacaatggg ttatcaataa aatatttgct aaagaacatc acaaaaaaac aagcggagca
    21841 tgaaaaatga aaatcgaagc cattgatctt caaagtgcct taacagaagc ttcaagaagt
    21901 ttagaatgtt ctgtgatgga cttagaatat gagattattc agcatccaag aaaaggtttt
    21961 tttggatttg gaagaaaaaa ggcaattata gaggctaaag caaaaaaaag gattttgaaa
    22021 aaaaatccta aaaaagaatt tacaagttca aaaaatcaca aaccagaaac acatgagcca
    22081 aaacaagaaa acaagattga aataaaaaat gaaaaaaata aaagtcaaaa agaaaaatac
    22141 acagtaaaaa gtgatgaaat ttttgatagt tttcatcgag aaagcaaagg agtgcgtaat
    22201 actcaggata ttttagatga gattcgtatt cagcttgtaa aacttttaga aagctcccag
    22261 tttaaaatag agcttagtga acttagaatg tatgatgaag attgtgtttt gattcgattg
    22321 gatggggaag atgctgcttt gatgataggc aaagaagcac atcgttacaa ggctatttct
    22381 tatcttttgc ataattggat caatttaaaa tataatcttt tagtgcgcct tgagatcgct
    22441 caatttttag aaaatcaaat tcaaggtatg cagctttatt tacaaagcgt gattgaaaaa
    22501 attaaaattc atggacgcgg acaaaccaaa cctttagatg gggttttgat aaaaatcgct
    22561 ttagagcagt taagagctga atttccagat aagtatgtag gaattaagca aaataatgat
    22621 caaagatttg ttgtaataaa cgactttttc aaaaaagatg agtgatacta tagcggctat
    22681 tgccacagct catggtgtgg gttcgatttc tattgtaaga ttaagcggtg aaagggcttt
    22741 agaatttgcc ttaaagctta gccacaaaac caaacttacc ccgcgccatg ctacttttac
    22801 aaaacttttt aatcaaaata atgaaattat cgatgaagct ataatgatat attttaaagc
    22861 cccttatagt tttacagggg aagatatagt agagtttcaa actcatggag gatttagtgt
    22921 gagtgaagtt ttactcgaag aacttgtgag tttaggagca agacttgctt tagcagggga
    22981 atttagcaaa agagcgtgtt taaatggcaa aatgactcct ttaaaagctt taaatataca
    23041 agatctcata ctttcaaaat ctgcacttgc agctaaaatt atagcacgca acatgcaagg
    23101 aaacttagga gaacttttag aaaaaattcg cacagatttg gttaaaacct tggcttttgt
    23161 agaaactagc attgattatg ctgatgatga tttaccttct gatttattag agcaaatttc
    23221 tactatgtgt gaagaaaatt ctaaaatttt aaaagaaatt tatacgcttt ctcaaagcaa
    23281 aaaaggactc atagaaggtt ttaaaatcgc tattgtaggt aagccaaatg taggcaaatc
    23341 ttcgctttta aatgccttgc tttcttatga aagagctatt gtttcagata tagcaggcac
    23401 cactcgtgat actatagaag agaactttaa attaggaacg catttattac gcattataga
    23461 tacagcgggt attagggaaa gtaaagatgt tatagaacaa atcggcgtag ctttaagtaa
    23521 aaaaagttta gaagatgcag atattatttt ggcagtcttt gatgcttcaa gagtgcaaga
    23581 taaagaagat gagaaaattt ttgacttatt agcaaatact gataaaaaaa tcttttggat
    23641 tttaaataaa agtgatttag aaaatgtttt caaaaatact caaaataaaa attttatcaa
    23701 gcttagtgct caaaaagaca ttactttgtt aaaagaagaa ttgcaaaatt atcttaattc
    23761 ttttgatagc gaaggtatta tggtaagttc tttagatctt attaatgctt gtaaaatttc
    23821 aagtgaagcg atttttagag ctaaggggct tttagaggaa agttctttag agttttttgc
    23881 ttttgagctt aatttagcta ttaatgaact tgcaagattt accaaagatt ttcaaagaga
    23941 tgaaatttta gacgaaatgt ttggtaattt ttgtttagga aaatgaaagg atagaaatgg
    24001 ataaagaaac cataaaagca cataaaatca gcgatgaaga atatgcacaa attttagaaa
    24061 ttttaggacg tgagccaaat ttattagaac ttggggttat ttctgcgatg tggagtgagc
    24121 attgctctta taaatccagt aaaaaatatc ttaatggttt tccaactaaa gcaccttggg
    24181 tgattcaagg tccaggtgaa aacgcagggg ttattgatat cgggcaaggt atggcagcgg
    24241 tttttaaagt ggaaagtcac aatcacccta gttttatcga accttttgca ggtgcggcta
    24301 caggagtagg gggaattttg cgtgatgttt ttactatggg tgcaagagtg gttgcggggc
    24361 taaattcttt aaaatttggc gatattcatg atgaaaaatg cggcaaacat caaaaatacc
    24421 ttgttaaagg cgtggtaaat ggaatttctc attatggaaa ttgcatgggt gtgccaacta
    24481 taggcggaga atgtgctttt gatgagtgtt ttaatggaaa tatcttagtt aatgcctttg
    24541 ctttaggggt ttgtaaaagt gaagatatct tttatgctaa ggctgaaggt gtaggaaatc
    24601 ctgtgattta tgtgggttca aaaacagggc gtgatggact tggtggagcg gttatggcaa
    24661 gtgatagctt caatgaagaa agcaaatctt tgcgtcctac agtgcaaatt ggcgatcctt
    24721 tcagtgaaaa acttcttatg gaggcttgtt tagagctttt taaaaccgat tatattgtgg
    24781 gtattcaaga tatgggtgct gcagggctta cttcaagttc ttttgaaatg gcaggaagaa
    24841 gtggcagtgg catgaaactt tacttagata aaactcctat gcgtgaaagc ggtatgactc
    24901 cttatgagtt aatgcttagc gaatctcaag aaagaatgct tatttgtgcg aaaaaaggct
    24961 atgaagataa ggttatagag attttcaaaa aatgggattt agatgctgtg gttatgggtg
    25021 aagttaccaa tacaggaaaa atggagcttt tttggcatga tgagcttgta ggacttattc
    25081 ctatcgagcc tttaagtgaa aaagcgccga ttttaagtcg ccctacaagt gaaccaaaat
    25141 atttaagtga aattaaaaat tataaatttg agttaaaatc aagcgttcaa gagcttttta
    25201 tacaaatgct tcaaaatgaa aatattaata ataaagcttt tatttatgat caatttgatt
    25261 caagtgtgca aaccaatacc ataaaagctg atggaagatt aggtgctagt gttattcgta
    25321 tcaaagaaaa tggtgcaagt gtggctatgg ctatagaatg taattcacgc ttaaattatg
    25381 taaatcctaa aataggagca gctttagcag tagcttctgc aggaagaaaa gttgcttgta
    25441 cgggggctaa acctttggca ataagcgatt gtttaaatta tggaaatccg caaaatcctg
    25501 aagtgatgtg gcaattcgca caaggttgcg aaggtattaa agaagcttgt aaagagttaa
    25561 ataccccagt agtaagcggc aatgtttcgc tttataatga aactgaaggc gtaagtattt
    25621 atccaagtcc tactatagta agtgtagggg ttttagaaga tgcaaataaa accctaaaag
    25681 ctagttttga aaaagaaaat ttaagcgttt atcttttggg tgaaagttta ggagaattta
    25741 gtggatctat ggtaatgaaa atccaagata aaaaagtatc aggaagtctt aaagagcttg
    25801 attataaagc tgaacttgca ctttgggatt tgctttataa agccaatcaa aattctttac
    25861 ttgagtgtgc caatagcgta ggaatagggg gtattgctat gactttggca aaaatgtttg
    25921 ctatttctag tgtgggtgca aatttaacaa gtgattttga tgatgaaaaa atgatttttg
    25981 atgagagtgc aagtcgtgct ataatagggc ttagtaaaga aaatgaagaa gcttttttaa
    26041 atttagctaa agaatttgga gtaaaagctt ataaattagg tgtgagtaca agccaaaaac
    26101 attttaaact tgatagcatt gagttaagca aggctgaact tgataagctt tattttgaaa
    26161 gttttaaaga gcaaatccaa tgactttagt tttaattata ctcgttgttt tggtgtttta
    26221 ctggtattat aaaacttggg gaaaacagga ttttttaaac tcagctacaa gaggagccaa
    26281 aggctttgct aagggttttg ctcgtggggt tatggaagaa agaatggatg agtttaaaag
    26341 gcgtatgaat tactatgtta tcgcactttt ggcaaaaatt gcaaaaagcg atggcagggt
    26401 aagtgaaaat gaagctgaaa tgatcaaaga tcttttagat gcaaatgcca aagatgaaaa
    26461 agaaagagct tttttaaaag caagttttaa cgaacataaa gaaaatttaa gcgatgcttt
    26521 ttatgtggca aaagattttt taaaagaagt gcctttgcct aaaaatgagc gttttaatgt
    26581 cttgcgtgtg cttgttttta tggctttaat cgatgcagat tttaatgcta aaaagcgtga
    26641 aattttagag caaatcgcta aagcctttga tatagcaaaa agcgaactag acgcttttat
    26701 agcaagtctt tcaaatttaa aaagtactaa aaaagaatta agtcttgatg aagcttttgc
    26761 tattttagaa cttccaaata atgcggattt aaatgcggta aaaaaacaat accgcaattt
    26821 ggcaaaaaaa taccatcctg atattttaaa tgcaaacaat gttagcgaag aagagcttaa
    26881 aatcggcgta gagaaatttc aaaaaatcaa cgaagcttat gaaaaagtta aaaaacattt
    26941 agaaaggtaa aaatgagagc attacttagt gtgagtgata aagaaggcat agtagaattt
    27001 ggcaaagagc ttgaaaattt aggttttgag attctttcaa ctggggggac ttttaagctt
    27061 ttaaaagaaa atggaataaa agttatagaa gtgagtgatt ttacaaagag tcctgagctt
    27121 tttgaagggc gtgtgaagac tttgcaccct aagattcacg gtgggatttt gcataaaaga
    27181 agcgatgaaa atcatatcaa acaagcaaaa gaaaatgaaa ttttaggcat tgatctagtt
    27241 tgtgtaaatt tatatccttt taaaaaaact accattatga gcgatgattt tgatgaaatt
    27301 atagaaaata tcgacatagg cggacctgcg atgataagaa gtgcagcaaa gaactataaa
    27361 gatgtgatgg tgctttgcga tccacttgat tatgaaaaag tgattgagac tttaaaaaaa
    27421 ggtcaaaatg atgagaattt tcgtttaaat ttgatgataa aagcttatga gcatacagca
    27481 aattacgatg cttatattgc aaattatatg aatgaacgct ttaacggagg ttttggagcg
    27541 agtaaattta tagtaggaca aaaagtattt gatacaaaat atggagaaaa tccacatcaa
    27601 aaaggggctt tatacgagtt tgatgccttt tttagcgcaa atttcaaagc ccttaaaggc
    27661 gaagcaagtt ttaacaatct aaccgatatt aacgcagctt taaatttagc tagtagtttc
    27721 gataaagctc cagctattgc tatagtaaaa catggaaatc cttgcggttt tgctataaaa
    27781 gaaaatttag tacaaagcta tatacatgct ttaaaatgcg atagcgtcag tgcttatgga
    27841 ggagtggttg caatcaatgg aactcttgat gaggctttag caaataaaat caatgaaatt
    27901 tatgtagaag taatcattgc agccaatgta gatgaaaaag ctttagccgt gtttgaaggt
    27961 aaaaaacgca ttaaaatttt cactcaagaa agtccgtttt taatccgcag ttttgataaa
    28021 tatgatttta aacatattga tgggggtttt gtgtatcaaa acagtgatga agtgggcgaa
    28081 gatgagctta aaaatgcaaa gcttatgagt caaagagagg caagtaagga agaattaaaa
    28141 gatcttgaaa tcgctatgaa aatagcagcg tttaccaaat caaacaatgt tgtttatgta
    28201 aaaaatggcg ctatggtggc tataggtatg ggtatgacaa gtagaatcga tgcagcaaag
    28261 gcagcaatcg ctaaagctaa agaaatggga cttgatttgc aaggttgcgt tttagcaagt
    28321 gaagcctttt ttccttttag agatagcata gatgaagcaa gtaaagtagg ggttaaagct
    28381 atagtagaac caggcggaag tataagagat gatgaagtgg taaaggcggc tgatgagtat
    28441 ggtatggcgc tttattttac aggagtaaga catttcttac attaagttta atggaatgtt
    28501 atgtttttta cacataattc aataaaaatt aaataaatta tgtgtaaaat atttccgaaa
    28561 aattttattt ttaggaaact atgatgttta aaactatagg atttaaggtt tctgctgcaa
    28621 tttttgtggt gttgcttata agttttattg taatgcaagt gattttaaat ttggatttta
    28681 aaaatactgc caataaaatg agcagggcaa atttagatac cgtaagtact tctgtttttc
    28741 aaacaatgag aatggctatg aatttaggag atcctgaaaa aattaaagaa gccattgaag
    28801 atgcaaaaag tatagagggt attagtgata ttaaaattta tccttcaaaa gatactatag
    28861 atctttttga gatgaaagcc cctcaaattt caaatgataa gcgtattata gaacaatttt
    28921 caaatcctaa aattcaagct ttagaagaaa atgtaaatgg tgttgtgcat ttaagattga
    28981 tacgcccttt gattgcagat gaaagttgtg ttgcttgtca tgcaaatgct aatgtaggga
    29041 gtgtgattgg ggttatggat atatcacatt ctttagaagg tgttcaaaaa gatataagca
    29101 aaaccagtca atcttatatt gtaatattta ctattgcttt gatttttacc ctttgtgtgg
    29161 tttttttaat gcttaaagtt gttgttggaa agcctgtttt agagctttta aatcatgcta
    29221 aagaattagc tcaaggaagt ggcaatttaa aagctcgtat ttcagttaaa ggtcaagatg
    29281 aaattgcttt agcttgtgga tatatcaatt aatttatcga aaaaactcat aaggcagtta
    29341 gcggtgcaag tcataattca aaaaatgtag aaaaacaaag caatctttta aattcaaatg
    29401 ctatttcttt aagtgatatc agttcacaaa gtcataagca aatagatcaa agttttaaac
    29461 ttggtgcaaa tgttggcaat gaacttggag aacttgctag tttgtcaaat aaagcaaata
    29521 gtgccaatga aaaatccttt ttattattag aacaaatgct taaatctttg tttaatgttg
    29581 ctaataaagt atcaacagta tctcaaaatg aaaatgaatt ggctaaaaaa gttgaaaaca
    29641 tggtcaatca agcaggtaat atacaaaaag caactcaaat gatggatgag atcgcagata
    29701 aaaccaattt actatcccta aatgctggca tagaagcagc tagggctggt gcatttggac
    29761 gaggtttttc tgtaattgct gaggatgtta ggcagttggc tcagaacagt gaagaatttt
    29821 tgggaaatgt agctcaaatt acaaaagagc ttttgcaaag tattaatgag gttagcgcag
    29881 aattaaagaa aaatgctcaa agtgtacaag ctttaaatga tgacaccgct ttattggttg
    29941 atgatgctaa tgaggttaaa ttatgcaacg aagatgctag ggctttggta actcaatgta
    30001 ctgaaaaaat aaaaatttcc caagagaata tacaaaattt actttctcgt atgcaagaaa
    30061 atgttgaagt aagtgaaaag aatgaagaaa tttctaaaat tctgcttcaa gttgcagatg
    30121 agttaaaaat agtgtgtcat aatcttgaaa gcgaacttaa ccaattttaa atttaaagga
    30181 ataaaatgaa aaaaatgctt caaattgctt tagctgcaac tttttttgcg ggttgtgcta
    30241 gtacttctct tacttcatct acttctaaag gtaataatga acttgtgcaa aatcagcttt
    30301 tcaaaataga aaaaattata gtaaatggca aaatttttga tccaaaaaac gcagaggaaa
    30361 gtccaaatat cagttttgaa aataataaat tttatggtta ttcaggatgc aatcgttttt
    30421 ttggttctta tcaaactaag gcggatactt tacaaatcga aggtgatcgc gtagcttcaa
    30481 ctcaaatgct ttgtcaccca atggatgtaa tggattttga aaattctttc ctttcaaatt
    30541 tcaaaggaac ttttaaaatt tcaaatgaaa atggaaaact tgttttaagc aatgatgaaa
    30601 tgaaaatctt ttttaaataa tgccctaaag cctcgaaata tcgaggcaat cttcttaaat
    30661 ttgacaaaag tctaaaaaat gatacaatta taattttatt atcaaaaaag gtagttaaat
    30721 gataaaatca attcctgaat ggagtgagca agaatacctc atgctttctt taccccatga
    30781 aaaaagcgat tggaatccct acttagagga aattttgcaa agttataaag aatttgtaaa
    30841 agtggtaagt gaatttcaaa aagttttact tatagctcct aaacagagtg attttgaaaa
    30901 ttttaaagat ataaaaaatg tagagttttt taaatgtgat accaatgata cttggatacg
    30961 cgattttgga gctatagata tagtagaaaa tggtcgttta aaagctcttg attttacttt
    31021 taatgcttgg ggaaataaat ttcaaagcga gcttgataat gctgtaaatt ctaagctttt
    31081 taaagaaaaa tttaaagagg agcttaaaaa ggttgatttt attttagaag gaggaagtat
    31141 tgactttaat ggagagggtg tgatgcttac aagctctcat tgtcttttaa atgaaaatag
    31201 aaattctcat ctaaacaaaa ctcaaattga tacaaaatta aaagaaattt ttggtttaaa
    31261 gcaaattatt tggctagaaa atggtttcat aaaaggtgat gatacggatc atcatatcga
    31321 taccttagca agatttatag ataaaaatac catagcgcat tgtatttgtg aagatgaaga
    31381 ggatgagcat tatttgcctt tgcaaaaaat gaaagaagag cttaaaaaaa caggctttga
    31441 tttattagaa cttcctatac ctaagccttt atactatgaa gaaagaagat taggagcgac
    31501 ttatgcgaat tttgttttta taaataatgc tttaattgtg cctttttaca aggataaaaa
    31561 tgatgaaatc atagctaaaa gactttctaa agctttacct aatcataaaa ttataggagt
    31621 agatgcaaga gtgtttttac gacaaaacgg ttctttgcat tgttcttgtc aaaatcgttt
    31681 caaaggttta agatgagttt gcaaaaaaaa gcaactcttg tagcaagttt atgtgctatt
    31741 gttttagcct tggttaaatt tatagtaggc ttaacaagtg gttctgttgc agtactttca
    31801 agtgcgattg attctttaat ggattttgct atttctgctt ttaatttttt ggctcttaaa
    31861 aaaagctcac aaaaggcgaa tgaaaattat aattttggtt tttctaaaat tgaagcttta
    31921 atgggtttgt tagaaggtgt ttttatagtt ggcgtgggga tttttatttt ttatgagagt
    31981 attttaaaga tttattataa agaagaaatt aaagatttaa attcaagcat ctatgtgatg
    32041 atttttgctt taattatgac tttttttctt gtactttttt taaattatgt agctaaaaaa
    32101 accaaaagtt tgattataga aagtgatgct ttgcattaca aaacagattg cttaaccaat
    32161 gcttgtactt taggggcttt ggttttgatt tattttacaa atttacatat tattgatgct
    32221 atttttggga tagtgatcag tctttatacg gcattttctg cttttaaaat cattaaaaaa
    32281 gctttagctt ttttaatgga tgaggcttta cctaaggaac aagtggataa aatttgtact
    32341 ttgatttcta ataatcctga aataatttcc tatcatgaat taaagacgcg taaaactcca
    32401 agttgtaatt atttaagcgt gcatttggtt ttttgcccta taatttcgct tttaaatgcg
    32461 cataaaattt cagatgaaat agaagaaggt gtgcgtaaga tgtttgaaaa tgaaaaatgg
    32521 gatatacaaa ttcatttaga tccttatgat gatgcagaac aagaaaggca aagacaatga
    32581 aaatcgcttt aatacaacaa aaatttcatt taaataaaga acaaactata aaaaaaactt
    32641 gcgaatttat agaagaagcc tctaaacaag gagctgagct tgtttgctta ggagaacttc
    32701 atcaaagtga gtatttttgt caaagtgaaa atgtggattt ttttgactat gctaatgatt
    32761 atgaaaaaga tgtgaaattt tgggcaaata tagctagaaa aaatcaaata gtgcttattg
    32821 cttcattgtt tgaaaaacga agtgccggac tttatcataa tactgcagtg gtttttgaaa
    32881 aagatggttc tatagcaggc aaatatcgca aaatgcacat acccgatgat ccttgttttt
    32941 atgaaaaatt ttattttact cctggagatt tgggttttga acctataaat acaagtttag
    33001 gtaagcttgg agtgcttatt tgttgggatc agtggtatcc tgaagcagca agaattatgg
    33061 ctttaaaagg agctgagatt cttatttatc ccacggcaat tggttggttt gataaggata
    33121 aagatgaaga aaaacaaaga cagctcaatg cttggcttgg cgtacaaaaa ggacatgcta
    33181 tagctaatgg tttatatgta gtagctatca atagagtagg ttttgaaaaa gatgtaagcg
    33241 gggtagaaga gggcattaga ttttggggaa attcttttgt ttttggccct caaggtgaag
    33301 aactttgtct tttagattct caaaacgaat gtgtaaaaat catagaaata gataaaaaaa
    33361 gaagtgaaaa tgtgcgtcgt tggtggcctt ttttgcgaga tagacgcata gaatatttta
    33421 cagatttaac taaaagattt attgattaaa tcaataaatc ttatttgttt tgtatatttt
    33481 caagatagct ttttatttgc tctttttctt gttcgtttaa atttataaaa cttatttctt
    33541 taagtcttga taaaagcaaa ttatcttcta aaatttcatt ttttcctatt tctaaagaag
    33601 tgatgacgct agaacttatg agaagtcttt gggttgcatc ttttcttaag ccccatatat
    33661 tatgtatggc aatattatta tctgtaattt gccctgcata aagcataata tgtccaggta
    33721 aataaagtaa actaagataa gctttcccaa agcggtttaa aaaatctttt ttttgagaat
    33781 tactaagagt gcttatatca aaatgattaa aagaattttt ttgtgcagct gaatttcttg
    33841 gtagataaag tccaaaagct gaaaagatat cacgagttag taaagaacaa tctctttcaa
    33901 aattataacc gccccagcca taaggcaaat ttaaaacttg tgaaagttga ttttttaaat
    33961 ttttatcatt gaattgtaaa ggaaatttag atacatcttt tttagaaatt ttatattttt
    34021 tagaacctat ttttccataa aaatagtttt tatcttcttt gtagtaagga tagatagcac
    34081 caattctact ttcaaataaa aatttaccat cctcgctata gatagcaaat ttttctttta
    34141 gtggtgtgat aaagttgaga ttttcataga ttttcgctct atcgtttgag aaaaattcca
    34201 aatttttact ttcaacaaat ccaaatccag cttcacctaa aacaaaagca taacgcttat
    34261 ctttactaaa atgtgaaatt aagacagggg ctccagtatt taaaatgcca tcgcttgcat
    34321 agtcaaaagg aattccttca ttttcaaaaa aaggattttt taagatagct ctttgggttg
    34381 gaagattttt aatgattgta ttttggataa ttaaagcttt ttgattaagt ttaccgaatt
    34441 cttggatatt tgcgttattt atagcgtttt taaaccatga aagtggaata atttgtttat
    34501 tgaaaaaata ataagtattt tttgaattta aatataaagg aaaggaccaa aaaatatttt
    34561 gtcctttgta atttttaaat gaatcatgcc aagggttaaa gaaatatttt ttatatcgtt
    34621 ttgcatcaaa attaatatcg taagcaaatt gtggcaaaat gtttacattt tgttcgtatt
    34681 caagttttac ataatgttga ttttcatttt tttgttctaa attttcacga tgaagtgaag
    34741 ttaaattttt tgttgaacaa gctgttaaaa atagcactat aaaagtaaaa tataaacaag
    34801 atttcataat caacctttta gaaaaaatag ttataattaa agccaaggaa atataatgtt
    34861 tgataaacta gaaaaaattt tagcttatga taatgttttt ttaagtggtg gtgctggagt
    34921 tggtaaaagc tttttgacaa atgagcttat caaatcttat agaaaacaaa aaaaattagc
    34981 catagctctt ggttctagtg ctctatcggc gtttaatata ggcggtgtta ctttacacag
    35041 ctttttttgt ttagggtatt gtgatgatat gatgaaatta agtgtattgg atcgcaatca
    35101 aaaacaaaaa gaaaaattaa caaaacttaa agagctttta aaaacgattg agcttattat
    35161 tatcgatgaa atttccatgg ttagtgcaaa tgtttttgaa atgataggct ttagacttaa
    35221 aaattctcaa tttaatggaa aaattttagt tgttggagat ttttttcaac tgcctccagt
    35281 aattaaagaa aaaaaagaaa ctttatttaa ccattcttat tatgcttttt cttcattttt
    35341 ttggcaagat ttaaatttta agaatattaa actttctcaa cctaaaagaa cgcaaaatat
    35401 ggaattttat aaccatttat ctttgattag acaaggtttt ttagataaaa aaatttt
//
LOCUS       DAPIWJ010000005        29033 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.005, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000005 DAPIWJ010000000
VERSION     DAPIWJ010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 29033)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29033)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29033
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.005"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..333
                     /locus_tag="RJ259_000175"
     CDS             <1..333
                     /locus_tag="RJ259_000175"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HDV7365922.1"
                     /translation="NSSFQNFLRLLIENSRLECIPQIVKELERQKAFKENIFVGIVYS
                     KEKLSQENLKDLEVKLNKKFDANIKLNNKISQDDSVKIGLEELGYELSFSMKALQNKL
                     NEYILKII"
     gene            347..1852
                     /gene="atpA"
                     /locus_tag="RJ259_000176"
     CDS             347..1852
                     /gene="atpA"
                     /locus_tag="RJ259_000176"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HDV7365923.1"
                     /translation="MKFKADEISSIIKERIENFDLNLEIEETGKIISVADGVAKVYGL
                     KNIMAGEMVEFENGDKGMALNLEESSVGIVILGKGEGLKEGASVKRLKKLLKVPVGEA
                     LIGRVVNALGEPIDAKGVINANEYRFVEEKAKGIMARKSVHEPLHTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAVDTIISQRGQGVICIYVAIGQKQSTVAQVVKRLEEHGAM
                     EYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLI
                     LRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNV
                     ISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQVSGTLRLDLAQYREL
                     QAFAQFASDLDEASRKQLERGQRMVELLKQPPYSPLSVEKQVVLIFAGTKGFLDDIAV
                     SRIKEFEDGIYPFIEAKHPDIFEQIRSKKALDSDLEEKLAKAINEFKANHL"
     gene            1861..2745
                     /locus_tag="RJ259_000177"
     CDS             1861..2745
                     /locus_tag="RJ259_000177"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HDV7365924.1"
                     /translation="MSNLKEIKRKIKSVHNTQKTTNAMKLVSTAKLKKAEEAAKRSKI
                     YAQKIDEILSEISFQINKIVHNEDDVRLSLFHKKEQIKTVDLIFITADKGLCGGFNIK
                     TLKTVSEMLKEYEAKNINIRLRAIGKTGIEYFNFQKIELLEKYFHLSSSPDYEKACEV
                     IHAAVDDFLNGNTDEVILVHNGYKNMITQELKINHLIPVEPKSIEQTHNSLLELEPEG
                     TELLEDLMKTYFEYNMYYALIDSLAAEHSARMQAMDNATNNAKARVKQLNLAYNKARQ
                     ESITTELIEIISGVESMK"
     gene            2771..4168
                     /gene="atpD"
                     /locus_tag="RJ259_000178"
     CDS             2771..4168
                     /gene="atpD"
                     /locus_tag="RJ259_000178"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HDV7365925.1"
                     /translation="MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLE
                     VAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGE
                     EISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
                     IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGA
                     RNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLA
                     SEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRAIAEKGI
                     YPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKL
                     VVERARKIEKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMV
                     GNIDEAIAKADKLKG"
     gene            4172..4561
                     /locus_tag="RJ259_000179"
     CDS             4172..4561
                     /locus_tag="RJ259_000179"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HDV7365926.1"
                     /translation="MNDLINFEIVTPLGVIYQGEVKSVTLPGSEGEFGVLKGHAALVS
                     SLKSGVIDIEKADLNHELVAIDAGHAKVDEDKICVLAKGAIWVCGSDESEIERNLAQA
                     KDLIKSMSSDNAALAATFSKLDNARMH"
     gene            4561..5115
                     /locus_tag="RJ259_000180"
     CDS             4561..5115
                     /locus_tag="RJ259_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HDV7365927.1"
                     /translation="MNFEAIFHFFNSSSIITYIVLLWLSLYFILAFSILFARLTYLAT
                     WRNKEKESLETLLLGEKDLSRTDSILRKCNDTTSNHLEIYKNLASRRASAGLTWLSII
                     ASTSPFIGLFGTVISILETFGGLGTQNSLSLIAPKISEALVATGCGILVAIPAYTFHL
                     IIKRKAFELLSIIDSEIKVISSSK"
     gene            5124..5513
                     /locus_tag="RJ259_000181"
     CDS             5124..5513
                     /locus_tag="RJ259_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HDV7365928.1"
                     /translation="MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQG
                     SQKNTSAPTVKSLIISINAKKEIFLNQEKYDFISFADNLAQRKAQFNTEDPVFIRADK
                     SLKYDDVISVLRSVKNLGFNKVALQTE"
     gene            5516..6295
                     /locus_tag="RJ259_000182"
     CDS             5516..6295
                     /locus_tag="RJ259_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HDV7365929.1"
                     /translation="MKNYGLSNLNSFLLALAIYVGIVILVFFRLVSEVEPAIQYTDIK
                     DSFVDIELAEPSKQVITQSNTPKEIQKSTEQIDIEKLFAQTTNKTVKTEDIDQKASNF
                     NELFGNIKEIQEEKTTKIQSSAKSGISSAPKPQASELVKQLNDSLLQEESSTQGESTK
                     AQKIGIYDEFLGKVVRIITQRWTQYYPNSEKISVKVKIFIDENGKFGYTSVEKSGNPL
                     YDAKVAEFLESQKGKFITYPPQNKNISITMNLRDEVKVKND"
     gene            6305..7513
                     /gene="tolB"
                     /locus_tag="RJ259_000183"
     CDS             6305..7513
                     /gene="tolB"
                     /locus_tag="RJ259_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HDV7365930.1"
                     /translation="MKKIVAIFLVFLGSLWAEDPVIDVVNSGVVLPKIIVKDNSNLSD
                     ENLKKSFYNIIVNDLKVSSNFEVVANVTETSNYIFEYTLNKNGNTLSLNVKIKAGGSD
                     KSEQTYTLNGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSSKKSQIIMAD
                     YTLTYQKVIVDGGLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSSGG
                     MVVASDVNVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSK
                     VVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNNSAVSTYKDFLVYSSREPNQAGVFNI
                     YLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNANKTFYFPL
                     RVGKIQSIDW"
     gene            7590..8087
                     /gene="pal"
                     /locus_tag="RJ259_000184"
     CDS             7590..8087
                     /gene="pal"
                     /locus_tag="RJ259_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HDV7365931.1"
                     /translation="MKKILFISIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGW
                     DIDSKISQLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW
                     GTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
                     FKLSR"
     gene            8091..9038
                     /locus_tag="RJ259_000185"
     CDS             8091..9038
                     /locus_tag="RJ259_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDV7365932.1"
                     /translation="MKKIFTVALLGATLLYAESSAFGAGDITSNSSYGLTSNEKLFKE
                     KLDNLNNENIQTNARINEINERIEGLQSTLEGINSQYAKSNSRLSQVEENNQNIENNF
                     TSEIQKLKAYVEESRKIQEANNKQVKKVLAELSSLVDAINANYVSKNELNDANLSVKT
                     ITPSVVVSTTDSNSTIENNNTQNTQDDKAKQIDESWKKKKNNEILELAIKDVDKNAFE
                     DSKAKLNFLITKQYKPARANFWLGEIEYKQKNYNNAIVYYKKSSSLSTKGDYFPKLLY
                     HTAISLDKTGDTKTANGFYKALKTNYPNSPEAKASPNRK"
     gene            9053..9622
                     /locus_tag="RJ259_000186"
     CDS             9053..9622
                     /locus_tag="RJ259_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDV7365933.1"
                     /translation="MAIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILE
                     SLEEEVMKLDCPSNADVVIKKEKGLGEYDENAVQTLPKEQFAGIDLKVGMELFGEGEN
                     GETVRVTVKEIGENDVTIDYNHPYAGRDLLFSLNIVDARAASEDEILTGIIAGSHSCG
                     CGSGHGHDHHHGHGHGGGGCCGGGGCGCH"
     gene            9622..10542
                     /gene="fabD"
                     /locus_tag="RJ259_000187"
     CDS             9622..10542
                     /gene="fabD"
                     /locus_tag="RJ259_000187"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HDV7365934.1"
                     /translation="MNAAFIFPGQGSQSLGMGKDFYENSIKAKELLQNASDFCKIDFK
                     HLLFEENEKLNQSEFTQPAIVLNSLMAYSVLLEKKPDLSSKFALGHSLGEFSALAVNG
                     AFDFLEALSLVNKRGLFMQEDCAKVEAGMMVVLGLDDEKVEELCQKAQKENKQIFAAN
                     YNCDGQIVVAGLKPDLASYESVFKEAGAKRAMLLNMSVASHCPLLENASAKLCVELEK
                     VLKPNFKAVISNANAKIYTSKEEALELLKAQLISPVLYKQSIKACENEVDYFIEFGAS
                     VLKGLNKKITSKETYALTNMNDIDEFLKVV"
     gene            10539..11228
                     /gene="pfs"
                     /locus_tag="RJ259_000188"
     CDS             10539..11228
                     /gene="pfs"
                     /locus_tag="RJ259_000188"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HDV7365935.1"
                     /translation="MMKIAILGAMSEEITPLLETLKDYTKIEHANNTYYFAKYKNHEL
                     VLAYSKIGKVNSTLSASVMIEKFGAQALLFTGVAGAFNPELEIGDLLYATKLAQYDLD
                     ITAFGHPLGFVPGNEIFIKTDEKLNNLALEVAKELNIKLRAGIIATGDEFICDEAKKA
                     KIREIFNADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKIS
                     ANFVLKMCEKL"
     gene            11225..11980
                     /locus_tag="RJ259_000189"
     CDS             11225..11980
                     /locus_tag="RJ259_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HDV7365936.1"
                     /translation="MINLSKKLIRQVAQANAKFGLIKDGDRVLLGLSGGKDSLALAHL
                     LNRMQAHAPFKFELEAVTLSYGMGEDYSHLHAHCEEHGIKHSVLDSNIYEVSGDTIRE
                     NSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDAAESFFMNFIHNGALRTLAPIY
                     QSKRGITVIRPLIFVRERQLRDNATQNELSVIGNEFCPGMKLSEKNVKFPHAREEAKQ
                     LLANLEKDHPKLFTSLKTAFTNLHTESFWLQKA"
     gene            11985..12506
                     /locus_tag="RJ259_000190"
     CDS             11985..12506
                     /locus_tag="RJ259_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HDV7365937.1"
                     /translation="MKKAFVLVDYQNDFIDGSLGFDKALKIKENILKALNQIDFNNTH
                     LLLTYDTHDEHYLQSKEGLNLPVKHCIKESLGWQMPKEFEPFLQKAHKIFYKNTFGSL
                     ELANFIQKSDYEELHFAGLVSHICVFCNIILAFGAKPNARIILHQNLSASFDENLEKS
                     AFDILRAYGIEIV"
     gene            12506..13120
                     /gene="recO"
                     /locus_tag="RJ259_000191"
     CDS             12506..13120
                     /gene="recO"
                     /locus_tag="RJ259_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecO"
                     /protein_id="HDV7365938.1"
                     /translation="MQGFILHTQKVKDEDLIVYILSPKMLIKAYRFYGLRHSSILSGY
                     KIDFALEENPSFLPRLKDVLHLGFLWIMQRDKMLIWQEFIRLLYRHLKDVEELDSFYF
                     DLLDECVKRFEKQNPKRVIVDAYLKILEFEGRLHKDFFCFACDEKIQNSITLLRAFLP
                     SHSQCALGFEFEEKKLKQFYSSKNCAIFDDEEIENLYHLIKEGL"
     gene            13117..13524
                     /gene="ybeY"
                     /locus_tag="RJ259_000192"
     CDS             13117..13524
                     /gene="ybeY"
                     /locus_tag="RJ259_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HDV7365939.1"
                     /translation="MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQD
                     KTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGF
                     DHENDNGEMREKEKELIEHFNLPKSLIVRTLED"
     gene            13648..14337
                     /locus_tag="RJ259_000193"
     CDS             13648..14337
                     /locus_tag="RJ259_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7365940.1"
                     /translation="MIVFPLSSFNRYFGNNPLQTLTKIRDESIENGNPELTKKQREEL
                     GNDLIDLYKISKKFSDKIELVEGSIEDKLRNNELPESEVKNLFQWMDENAKHPRWMHI
                     DGVSYDEAYVKIFHTSKSIDEFKEKYLELQKKYFVDFNNIDSSQKKLQETSEEDKKAF
                     KPIQVESKSETYKDDNKMNELLRKLLETKFGTSDELEILFGMNFSNDNAGEFNKILSQ
                     NTSAKIIDIKA"
     gene            complement(14362..15288)
                     /locus_tag="RJ259_000194"
     CDS             complement(14362..15288)
                     /locus_tag="RJ259_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HDV7365941.1"
                     /translation="MIDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNAL
                     VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNK
                     VVKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGV
                     DFISIHGRTRKQLYSGKADYGSIASAKASVKIPVIANGDINAQNAKEVYKITKCDGLM
                     IGRASVGNPWIFYEIKSGKSVDEKLKKEIILTHFDEMIKHYKDQGVSIFRKHLHEYSK
                     GHKDASAFRDTVNRIDNVEEMRKKIEEFFSLT"
     gene            complement(15285..16271)
                     /locus_tag="RJ259_000195"
     CDS             complement(15285..16271)
                     /locus_tag="RJ259_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7365942.1"
                     /translation="MKIKLFLLASFIYIALIFAFAWHLELGSYTLNISTYTFELPIMI
                     WLVIPLFIYMILAVLHIAFYGFLRYLKFKHFFKDAAKFEAYTQDLLLEKDLKTTFQTK
                     EFRSVAQLFKTIKTHEKIPHSNKINEILDLIDGLNKNEFFNLSKFKLENNNVLYLQNE
                     KNHLKNDANYAYNKLKNLNEIKDEFEEIAFNTLIEKASYEQIKNVKIPKKPSEVLTLI
                     KRFKEGNLELSVAEYEVLLSHNILSEKDYLNAAKLSTKLLNPDAILGIFNKIKNEKSE
                     ALRAYLYLLAEFGLLDELREQIHNDDKKFNDFKAFLALREKNIKIDLNQLIQ"
     gene            complement(16261..16623)
                     /gene="dksA"
                     /locus_tag="RJ259_000196"
     CDS             complement(16261..16623)
                     /gene="dksA"
                     /locus_tag="RJ259_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK suppressor DksA"
                     /protein_id="HDV7365943.1"
                     /translation="MKKNEIQNFKNILEERKKAILENLQSNSNEIEALHNSVPSDSVD
                     FSVIETGSQIDFAISTNLKEELIEIEDSLDKIKNGTYGICESCDDEIDSQRLKVKPHA
                     RYCITCRQIAEQGKKHEN"
     gene            complement(16635..17084)
                     /locus_tag="RJ259_000197"
     CDS             complement(16635..17084)
                     /locus_tag="RJ259_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HDV7365944.1"
                     /translation="MQVNIFCIQKSDEFKTCSEKYSKLISKYATLKEINVFNKKIALA
                     QNLNAIEAKKSYEEAFMPYKKGYCIALDEKGKDLTSIEFAKLIQDKNELSFFIGGAYG
                     LREEFNQSLDFRLSLSKLTLAHQFVKTLLLEQIYRAFCINNNHPYHK"
     gene            complement(17086..17928)
                     /locus_tag="RJ259_000198"
     CDS             complement(17086..17928)
                     /locus_tag="RJ259_000198"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HDV7365945.1"
                     /translation="MNFADIFSKIRRQQPSIKEAPNHWVKCQSCHALMYYKEIESCFN
                     VCPKCNYHMRISADERIKLLSDEGSFIEYDANLEAIDPLKFVDSKSYKKRLSEGESKT
                     GRKSSVISGECEINGLKTQLVVFDFSFMGGSLGSVEGEKIVRAIQRAITSKTSLVIVS
                     ASGGARMQESTYSLMQMSKTSAALKLLSKEKLPYISILTDPTMGGVSASFAWLGDLII
                     AEPEALVGFAGARVIKQTIGADLPEGFQKAEFLLEHGLIDAIVERGEQKQYLSDVLKF
                     FSGK"
     gene            complement(17937..18659)
                     /locus_tag="RJ259_000199"
     CDS             complement(17937..18659)
                     /locus_tag="RJ259_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HDV7365946.1"
                     /translation="MKEFLDACLNANLQIRKYLNNIPQNDLKLCSKLGYDKNQGYELD
                     LKCEQIFIKYLSCFGQIFSEESGLIGKASPKQMILDPLDGSSNFVSKIPFYGTSIALM
                     EKDQAKSAFVCNLVSQEIFAFNNKQAFKSNLSDPKYSPLTPNLFSKIGIVEKISLYPE
                     LLDFLTKNQLKFRSLGATALSLAYASYFSFVLILGKTRIFDTAAALAIHQNLYIEKNE
                     NFLLLSQDKKIFDIILEFLKNN"
     gene            complement(18659..20878)
                     /gene="bamA"
                     /locus_tag="RJ259_000200"
     CDS             complement(18659..20878)
                     /gene="bamA"
                     /locus_tag="RJ259_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HDV7365947.1"
                     /translation="MKKHLISICALVAMANAATIKDIKFIGLNHLSNTSAINIAGLKI
                     GEEINPAKINTAILNLYKQNYFENIAVENNNGILEIIVTEKPTIAKVSITGIASNDRK
                     QVESILGIKRGTLLDEGSIKEAIERIKAYYEAKSYFDTIVEYKKKTLENTDGLELEFI
                     VNRGENIIIDNVHLSGAKKFSYSDIEPAVVNKEKEFMGWMWGRNDGKLKVFELSNDSS
                     RIADEYMKKGYLDVQVSSPYLKTYTDTYQANLTYFIKEGKPYKIKSISIENPLFDDKQ
                     NAQTVKDLRSSAGKTINIEDIRKDVKTIETQSADLGYAFVEVYPDIQKNDQTQEATVV
                     FKVIPHDKVYIRNVIISGNSRTVDRVIRRELYITEGNLYNRTDLSESKNALKRTSYFD
                     DVNIKEEKVDNTHIDLIVDVKEASTGAISGGIGYGSSDGILLNASLSDTNIFGSGIKS
                     SVSVDKSDDTLSGRISLVNPRVLDSQYSLGGTLYSNDYEWDNYSEKNYGFDITVGRQF
                     ARYYNVSLTYNLEQSDIYHLSPTLLRTGYELGKSIKSSITPAITFNNTDDYYLPRSGI
                     IASTSLEYAGLGGDQEFISSSSKFNFYQGLQDYIGYDLIYRYKASFYKVWDEGYLPIN
                     QRIYLGGIRSIRGFESRTVSPKNQWGDEVGGTIAFANSVELSFPLIDRIKLRGSVFFD
                     YGMIGRKNLDEIKRMSTGIGIEWITPIGPLQLVFAKPLNDKKGDDTNSFEFNLGTRF"
     gene            20955..21782
                     /locus_tag="RJ259_000201"
     CDS             20955..21782
                     /locus_tag="RJ259_000201"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HDV7365948.1"
                     /translation="MKIAIIGLGLMGGSLGLCLKENKLISCVYGMDLSKENEKDALQL
                     GLIHELIEFKDLALCDMIFVATPVDAIIAILQKLVDLPSNVTIIELGSTKRKIIESLP
                     KNLIKQTLFAHPMTGTENSGPKAAFKELYKDAVCVLCDSEIADDLHQKRAVEIFSHLG
                     MKIVFMDSKAHDHHAAIISHLPHVISFSLANFVMKEEDKRNIVHLAGGSFKGMSRIAK
                     SSPQMWESIFLQNKDNLLSSIDFFQQELERCKQMIQLDKNDELREWMKQANTLREIL"
     gene            21862..23235
                     /locus_tag="RJ259_000202"
     CDS             21862..23235
                     /locus_tag="RJ259_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HDV7365949.1"
                     /translation="MAKRKGKTYLSVLILVLIAILIFFISRLSIFEKNPPQILMPDVV
                     YTDLKKPILVHIKDDESSIKNVQIILHKDDNTSAMVIADEKISNLKDITLQVALPKFG
                     YKENVKSFVLEAIAKDSSFWNFFSGNEARKQIAVLVDNTAPKINIISNSYQIEQGGAG
                     AVVFKADDANLDKVYIETNKGKIFKATPYVKEGYYAALIAWDARDEEFRAFVIATDKA
                     GNISKERIRYYFVNRKYRVSNINLTDKFLDGKIENLANQYAPKDNNLNRYEKFKFVNE
                     TLRNSNEKLIHEITSKVPEEKIDNFDLNLFLPLKNGMKVADFADHRYYSYNGQFVSDS
                     YHMGLDLASVAQAPIISNNAGKVVFAAENGIYGLNLIVYHGFGVYSLYGHCSSKNVDL
                     DEMINKQSIIGKTGTSGLALGDHLHFGVLVQGVETRPEQWQDKKWIENNIYNVLNDGK
                     KIILGKN"
     gene            23235..24119
                     /locus_tag="RJ259_000203"
     CDS             23235..24119
                     /locus_tag="RJ259_000203"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HDV7365950.1"
                     /translation="MKQLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVFFRSDLN
                     ASYKASPENVINTQMATVLGDERGFISTIEHLMSAINAYGIDNVRIVLNANEAPVMDG
                     SSISFCMMLDEAGVKELDVPKKIMVIKKPIEVRDGNKFVRLTPTKEPRINYTIKFDNA
                     VIGEQSYNFEFSKKNYIENIARARTFGFLKDVQALRSMNLALGGSLENTIVVDENRIL
                     NPEGLRFKDEFVRHKILDAIGDLTLLGYRVFGDYTSYAGSHHLNHLLTKEVLKDKDAY
                     EIVSLEKTTQKAYEKVFA"
     gene            24158..24559
                     /locus_tag="RJ259_000204"
     CDS             24158..24559
                     /locus_tag="RJ259_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine biosynthesis
                     protein TsaB"
                     /protein_id="HDV7365951.1"
                     /translation="MIGIYQDDKLIKTYKSEEKASEFLPKILDELLKEYDFTSLIYAN
                     GPGSYMGIKISYVSLSTLSIVKNIPLFAVSAFELNGYKPISANKNFCFVYKEGEICLE
                     QNIPAEFFLPKNLQELKLNNDNLPFYFLDAI"
     gene            24568..25446
                     /locus_tag="RJ259_000205"
     CDS             24568..25446
                     /locus_tag="RJ259_000205"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HDV7365952.1"
                     /translation="MKILVPATSANLGPGFDCLGLSLKLFNETQIQKSGVFSISIGGE
                     GSDNIFLKKNNIFVNIFYEIYEKLSGKKDNFRFIFQNNIPLSRGLGSSSAVIVGAIAS
                     AYYMSGFKVEKERILDEALIYENHPDNIAPATLGGFVCSLVEKNKVYSIKKEIDKDLA
                     AVVVIPNLAMSTEQSRQALAKNLSFNDAVFNLSHASFLTACFLEKKYEFLKFASQDKL
                     HEINRMKNLPELFEVQKFALENKALMSTLSGSGSSFFSLAFKDDALALAKKIQTKFKD
                     FRVQYLEFDDNGFEIC"
     gene            25471..25728
                     /locus_tag="RJ259_000206"
     CDS             25471..25728
                     /locus_tag="RJ259_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HDV7365953.1"
                     /translation="MKKHIPIRMCIVCKNRFEQNMLFRFKVVLGDIVPKAEHGRSGYL
                     CQNCIEREDKVLQKAFSKICKNLNTKITQQGLKEIFLNGKD"
     gene            25715..28342
                     /gene="infB"
                     /locus_tag="RJ259_000207"
     CDS             25715..28342
                     /gene="infB"
                     /locus_tag="RJ259_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HDV7365954.1"
                     /translation="MAKIRIHEIAKELGYDSKEIIEKANELGLGIKTASNAVEPEIAA
                     AIYEYIQTREIPEAFKKNIKTPTAKKPKKENIKEQEKLNESEKKEPKKEPKKEEKLKQ
                     EVKKEELKIEKENAKEEEKQEIIDAHKPQSLASATLAKRRGLVIVKKKKDEEEIQVKK
                     EEVKNSNDISINNEERLSLKTMFSNADESLKKKKKEKKSFVASKKESTEKMNFLDEHD
                     FGDISLDDEDEVVLPDFSVKEQEKPQNINKKQPNFIRQAVGNSAGFGLEGGIQRRSRK
                     KPSKKIEKKEVEEVGSVAISKEIRVYEFADKIGKSTSEVISKLFMLGMMTTKNDFLDE
                     DAIEILAAEFGIEINIINEADEFDYVKDYEEETDEKDLVTRAPVITIMGHVDHGKTSL
                     LDYIRKSRVASGEAGGITQHVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASITDIV
                     IIVVAADDGVKPQTKEAINHAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIMPVE
                     WGGSYEFVGVSAKTGMGIEDLLEIVLLQADILELKANPKSFAKASIIESSVQKGRGAV
                     ATIIVQNGTLTIGSTVVAGEAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVADAGE
                     ILIAVKTDKEAREYANKRHEYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILKADV
                     QGSLEALKASLEKLRNDEIKVNIIHSGVGGITQSDIELASASENSIVLGFNIRPTGEV
                     KERAKDKGVEIKTYNVIYNLLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKIGQI
                     AGCMVTEGVINRGAKIRLIRDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEGCDD
                     MRVGDYIESYKEVEEQASL"
     gene            28339..28701
                     /gene="rbfA"
                     /locus_tag="RJ259_000208"
     CDS             28339..28701
                     /gene="rbfA"
                     /locus_tag="RJ259_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HDV7365955.1"
                     /translation="MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKG
                     RYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEY
                     QNHMDALFEKIKKDKNES"
     gene            28691..>29033
                     /gene="rimP"
                     /locus_tag="RJ259_000209"
     CDS             28691..>29033
                     /gene="rimP"
                     /locus_tag="RJ259_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HDV7365956.1"
                     /translation="MNLEALCKEAGLSFYDDELVSENGKKIYRIYVQKEGGVNLDDCA
                     RLSEILSPIFDVESPVNGEYFLEVSSPGLERKLSKIEHFAKSIGELVKITTNEKEKFE
                     AKIIAVDDENIT"
BASE COUNT        10333 a         3811 c         5233 g         9656 t
ORIGIN      
        1 aattctagtt ttcaaaattt tttaagactt ttgattgaaa attcaagatt agaatgcatt
       61 cctcaaatag ttaaagaact tgaaagacaa aaagctttta aagaaaatat ttttgttggt
      121 attgtatatt ctaaagaaaa attaagtcaa gaaaatctta aagatcttga agtcaaactt
      181 aacaaaaaat ttgatgcaaa tattaaacta aataataaaa tcagtcaaga tgatagtgtt
      241 aaaataggat tagaagaatt aggttatgaa ctttcttttt ctatgaaagc tcttcaaaat
      301 aagctaaacg aatatatatt gaaaattatc taaggagaaa aagtaaatga aatttaaagc
      361 tgatgagatc agttcaataa tcaaagaaag aattgaaaat tttgatttaa atcttgaaat
      421 tgaagaaaca ggaaagatta tttctgtagc tgatggtgtt gctaaggtat atggacttaa
      481 gaatattatg gctggagaaa tggtagaatt tgaaaatggt gataaaggaa tggccttaaa
      541 ccttgaagag tcgagtgtag gtattgttat acttggaaaa ggagaaggtt taaaagaagg
      601 tgcttctgta aaaagactta agaaattact taaagttcca gtaggtgagg ctttgattgg
      661 ccgtgttgta aatgctttag gtgagccaat tgatgctaaa ggtgtgatca atgctaatga
      721 atatcgtttt gttgaagaaa aagcaaaagg tattatggcg agaaaaagtg ttcatgagcc
      781 tttacataca ggaattaaag ctattgatgc gcttgtgcca attggtcgtg gtcaaagaga
      841 gcttatcata ggtgatagac aaacaggtaa aactactgtt gctgttgata ctattatatc
      901 tcaaagaggt caaggagtta tctgtatata tgttgcaatt ggtcaaaagc aaagtacagt
      961 ggcacaagtg gttaaaagac tagaagaaca tggtgctatg gaatatacta ttgttgtaaa
     1021 tgccggtgct tcagatcctg cggctttaca gtacttagct ccatatactg gtgtaaccat
     1081 gggtgaattt tttagagaca acgcaaaaca tgctttaatt gtttatgatg atttgagcaa
     1141 gcatgctgta gcttatcgcg aaatgtcttt gattttacgt cgtcctccag gtcgtgaagc
     1201 ttatccaggc gatgtttttt accttcattc aagattgctt gaaagagcaa gcaagctaaa
     1261 tgatgaatta ggtgctggtt ctttgacggc attgccgata attgaaacac aagcaggaga
     1321 tgtttctgct tatattccaa ctaatgttat ttcaattaca gatggacaaa ttttcttaga
     1381 aactgattta tttaactcag gaattcgtcc tgcaattaat gttggtttat cagtatctcg
     1441 tgtaggtggg gctgctcaaa ttaaagctac aaaacaagtt tcaggcacat taagacttga
     1501 ccttgctcaa tatagagagc ttcaagcttt tgcacaattt gctagtgatt tagatgaggc
     1561 aagtagaaaa caacttgaac gtggacaaag aatggttgaa ctcttaaaac aaccacctta
     1621 ttctccgctt agcgttgaaa aacaagtagt tttaattttt gcaggaacca aaggtttctt
     1681 agatgatatt gctgtttcta gaattaagga atttgaagat ggaatttatc cttttattga
     1741 ggcaaaacat ccagatattt ttgagcaaat tcgctctaaa aaagctttag attctgattt
     1801 ggaagaaaaa ctagctaaag ccattaatga gtttaaagca aatcatttat aaggtctttt
     1861 atgtctaatt taaaagaaat taaaagaaaa attaaaagtg ttcataacac tcaaaagact
     1921 acaaatgcta tgaagctagt ttctactgct aagttaaaaa aagcagaaga agcagctaaa
     1981 agatcaaaaa tttatgcaca aaaaatcgat gaaattttga gtgaaatttc atttcagatc
     2041 aataaaattg ttcacaatga agatgatgtg cgtttatctt tgtttcataa aaaagaacaa
     2101 attaaaaccg tagatttaat atttatcact gcagataaag gcttatgcgg tggttttaat
     2161 attaagactt taaaaacagt aagtgaaatg ctaaaagaat atgaagcaaa aaatattaat
     2221 attcgtctta gagctatagg taaaactggg attgaatatt ttaattttca aaaaatagaa
     2281 ttgttagaga aatatttcca tcttagttct agtcctgatt atgagaaagc atgtgaagta
     2341 attcatgctg ctgtagatga ttttttaaat ggaaatacag atgaagtgat tttagttcat
     2401 aatggttata aaaatatgat tacccaagaa cttaaaatta atcatcttat tccagttgag
     2461 ccaaagagta ttgaacagac tcataattct cttttagagc ttgaaccgga aggaactgag
     2521 cttttagaag atttaatgaa aacgtatttt gagtataata tgtattatgc gttaatcgat
     2581 tctttggcgg cagagcatag cgcaagaatg caagctatgg ataatgcaac taataacgca
     2641 aaggcaagag tgaaacaact aaatttagct tataacaaag caagacaaga atccattact
     2701 actgagctta tagagattat cagtggtgtt gaatcaatga aatagtaaaa ttttaaggag
     2761 aagataaata atgcaaggat ttatttcaca ggtattaggt ccggttgttg atgtagattt
     2821 taacgactat ttacctcaaa ttaatgaagc aattgttgta aattttgaaa gcgaaggaaa
     2881 aaaacataaa cttgttttag aagtagcagc tcatttagga gataatagag ttagaactat
     2941 tgctatggat atgacagatg gtttggtaag gggcttaaaa gctgaggctt taggtgctcc
     3001 tattagtgtt cctgttggtg agaaagtttt aggaagaatt ttcaatgtta ctggagattt
     3061 gatcgatgaa ggtgaagaaa tttcttttga taaaaaatgg gcaattcata gagatccacc
     3121 agcttttgaa gatcaaagca caaaaagtga gatttttgaa acagggatta aagttgtaga
     3181 tttacttgct ccttatgcaa aaggtggtaa agtaggtctt tttggtggtg caggtgttgg
     3241 taaaactgtt attattatgg agcttattca caatgttgca tttaagcata gcggctattc
     3301 tgtatttgca ggtgtgggtg agagaactcg tgaaggaaat gacctttata atgaaatgaa
     3361 agaaagtaat gttttagaca aagttgctct atgttatgga caaatgaatg aaccaccagg
     3421 ggcaagaaat cgtattgctt taacaggttt aacaatggct gagtatttta gagatgaaat
     3481 gggtcttgat gtgcttatgt ttattgataa tatctttaga ttttcacaat caggttctga
     3541 aatgtcagca cttttaggaa gaattccatc agctgtgggt tatcaaccaa ccttagcaag
     3601 tgaaatgggt aaattccaag aaagaattac ttcaactaaa aaaggctcaa tcacttcagt
     3661 tcaagctgtt tacgttccag ctgatgactt aaccgaccca gctccagcaa ctgtttttgc
     3721 tcacttagat gctacaacgg ttttaaatag agctattgct gaaaagggta tttatcctgc
     3781 agttgaccca cttgactcaa cttcaagaat gcttgaccca aatatcattg gagaagaaca
     3841 ttataaagtt gctcgtggtg ttcaatcagt gcttcaaaaa tacaaagatt tacaagatat
     3901 catcgccatt ttaggtatgg atgagcttag cgaagaggat aaacttgtag ttgaaagagc
     3961 aagaaagatt gaaaaattct tatcacaacc atttttcgtt gcagaagttt tcacaggtag
     4021 cccaggaaaa tatataagcc ttgaagatac aatagcagga tttaagggaa ttttagaagg
     4081 taaatatgat catttaccag aaaatgcttt ctatatggtt ggaaatatag atgaagctat
     4141 tgcaaaagcg gataaattaa aaggttaatt tatgaacgat ttgattaatt tcgagatagt
     4201 tacgcctttg ggtgtaatct atcaaggaga agtaaaatct gttactttac caggtagtga
     4261 aggagaattt ggtgtgctta aaggacatgc tgctttggtt tcttctttaa aatctggagt
     4321 aattgatatt gaaaaagctg atttaaatca tgagttagtt gctattgatg ctggacatgc
     4381 aaaggtagat gaagataaga tttgcgtgtt agcaaagggt gcgatttggg tttgtggaag
     4441 tgatgaaagt gagattgaaa gaaatcttgc tcaagcaaaa gatttgatta aatctatgag
     4501 ttctgataat gcagctttag cagcaacttt ttcaaaactt gataatgcaa ggatgcatta
     4561 atgaattttg aagctatatt tcattttttc aatagttcaa gtattattac ttatatagtt
     4621 ttattatggc tttctttata ttttatttta gcatttagta ttttgtttgc tagattgact
     4681 tatttggcta catggagaaa caaggagaaa gaaagtttag aaactttgct cttgggtgag
     4741 aaggatttaa gtcgtactga ttcgatttta agaaaatgta atgatacaac ttcaaatcat
     4801 ttagaaatct ataaaaattt agcaagtcgc cgcgcttctg ctggacttac ttggcttagt
     4861 attattgctt caacttcacc ttttataggt ctttttggga cagttatttc tatacttgaa
     4921 acttttggtg ggcttggaac tcaaaattct ttaagtctca tagctcctaa aatcagtgag
     4981 gctttagttg ctacaggttg tggtatttta gtagcaattc ctgcttatac atttcatctc
     5041 atcattaaaa gaaaagcttt tgaactttta agcattattg atagcgagat taaagttata
     5101 agttcgagta aataaggtta aaaatgccat ttgatgatga aaaacctgaa cttaatatca
     5161 cacctttagt agatattatg cttgtattgc ttgcgatttt aatggtaaca gctccaagca
     5221 ttacttatga agaaaaaatt aatcttccac aaggtagtca aaaaaatact agcgctccaa
     5281 ctgttaagag tttaattatt agtattaatg caaaaaaaga aattttttta aatcaagaaa
     5341 aatacgattt tataagtttt gctgacaatc ttgctcaaag aaaagcacaa tttaataccg
     5401 aagatccggt ttttatacgc gctgataaaa gcttaaaata tgacgatgtt atttcagtct
     5461 taagaagtgt aaaaaattta ggatttaata aagttgcttt acagactgaa taatcatgaa
     5521 aaattatggt ttgagtaatt taaattcgtt tttacttgct ttagcaatat atgttggtat
     5581 agtaattctt gtttttttta gacttgtaag cgaggttgaa cctgctatac aatataccga
     5641 tataaaagat agttttgtag atattgaact tgctgaacca tcaaaacaag ttattactca
     5701 aagcaacact cctaaagaaa tacaaaaatc aacagagcaa attgatatag aaaagctttt
     5761 tgctcagact acaaataaaa cagttaaaac cgaagatatt gaccaaaagg caagtaattt
     5821 taatgagctt tttggaaata ttaaagaaat acaagaagaa aagactacaa aaattcaatc
     5881 aagtgctaaa tcaggaattt ctagtgcccc aaaacctcaa gcttctgaac ttgtaaaaca
     5941 acttaatgat agcttgcttc aagaagaaag ttcaacacaa ggtgaaagta caaaggcaca
     6001 aaaaattgga atttatgatg aatttttagg gaaagttgtg cgtattatca ctcaaagatg
     6061 gactcagtat tatccaaata gtgaaaaaat ttctgttaag gtaaaaattt ttattgatga
     6121 aaatggaaaa tttggctata cttcagttga aaaaagtggg aatcctttat atgatgctaa
     6181 agtggctgaa tttttagaaa gtcaaaaagg taaatttatt acttatcctc cgcaaaataa
     6241 aaatataagc attactatga atttaagaga tgaagtgaaa gttaaaaatg attaggagaa
     6301 aaaaatgaaa aaaattgtag caattttttt agtcttttta ggaagtcttt gggcagaaga
     6361 tccagtgatt gatgttgtta attctggtgt agttttacca aagattattg ttaaagacaa
     6421 ttcaaattta agtgacgaga atttaaagaa aagcttttat aatatcattg tgaacgattt
     6481 gaaagtaagt tcaaactttg aagttgttgc taatgtaact gagacaagta attatatttt
     6541 tgaatacact ttaaataaaa atggtaacac tttgagttta aatgtaaaaa taaaagctgg
     6601 cggttctgat aagtcagagc aaacttatac tttaaatggt ttagagcaat atccattttt
     6661 ggcacataaa agcgtcaaag cttctgtaaa tgcgttagga cttgcacctg ttgattggat
     6721 ggatcataaa attttgatcg cgagaaattc tagctctaaa aaaagtcaaa ttattatggc
     6781 tgattatact ttaacttatc aaaaagttat tgttgatggt ggacttaatt tatttccaaa
     6841 atggggaaat aaagaacaaa ctctatttta ttatacagct tatgatcatg ataagccaac
     6901 tttataccgt tatgatttaa ataccaataa agctagtaaa attttatcaa gtggcggtat
     6961 ggttgtagca agtgatgtga atgtagatgg aagtaaacta cttgttacca tggctccaaa
     7021 agatcagcct gatgtttatt tatatgactt aaataccaaa aatctaacac aattaactaa
     7081 ttattctggt attgatgtta atggaaattt tattggctca gatgatagta aagtggtatt
     7141 tgtaagcgat cgtttaggat atcctaatat ttttatgcaa gatttaaata gcaatagtgc
     7201 tgaacaagtt gtttttcatg gtagaaacaa ttcggctgtt tcgacttata aagatttttt
     7261 ggtttattca agtcgtgaac caaatcaagc aggtgttttt aatatttatt tgatgtcaat
     7321 taatagtgat tatattcgtc aacttacagc aaatggaaaa aatttatttc caagattttc
     7381 tagtgatggt ggaagtatag tatttatcaa atatttaggt gcgcaaagtg ctttgggtgt
     7441 tattcgtgta aatgcaaata agacttttta ttttcctctt agggttggaa aaattcaatc
     7501 aattgattgg taaaaatttc aattttaggt taaaattaat taaaaattag atataataat
     7561 aagaatttat taactttgaa aggtcataaa tgaaaaaaat tctttttatt tcaattgcag
     7621 ctcttgcagt tgttattagt ggttgtagca caaaaagcac tagcgtaagc ggtgatagta
     7681 gtgttgattc aaatcgtggt tcaggtggaa gtgatggttg ggatattgat tcaaaaattt
     7741 ctcaacttaa tgatacttta aataaagtat attttgattt tgataaattc aacattcgtc
     7801 ctgatatgca aaatgttgta agcacaaatg ctaatatttt taacactgaa gtaagcggtg
     7861 taagtattac tgttgaagga aactgcgatg agtggggaac cgatgaatat aaccaagctc
     7921 taggtttaaa aagagcaaaa gctgtaaaag aagctttaat cgctaaaggt gtaaatgctg
     7981 atagaattgc tgttaaaagc tatggagaaa caaatcctgt gtgcactgaa aaaactaaag
     8041 cttgcgatgc gcaaaataga cgtgctgaat ttaaattatc aagataatta atgaaaaaaa
     8101 tattcacagt agctcttctt ggagctactt tactttatgc agaaagctca gcttttggtg
     8161 caggagatat aacaagcaat tcttcttatg gtttaacttc aaatgaaaaa ttatttaaag
     8221 aaaagttaga taatttaaat aatgaaaata tacaaacaaa tgctagaatt aatgaaatta
     8281 acgaaagaat cgagggttta caaagcactt tagaaggtat aaattctcaa tatgctaaat
     8341 caaattctag attaagtcaa gttgaagaga ataatcaaaa tattgaaaat aattttacta
     8401 gtgaaattca aaaattaaag gcttatgttg aagaaagtag aaaaattcaa gaagctaata
     8461 ataagcaagt aaaaaaagtt ttagccgaac ttagttcttt agtagatgct attaatgcaa
     8521 attatgtttc taaaaacgaa ttaaatgatg caaatttaag cgttaaaact attacaccta
     8581 gtgttgttgt ttcaactaca gattcaaata gtaccattga aaacaataat actcaaaata
     8641 cccaagatga taaagcaaaa caaattgatg aatcttggaa aaagaaaaaa aataatgaaa
     8701 ttttagaatt agcgataaaa gatgttgata aaaatgcttt tgaagattcc aaagcaaaat
     8761 taaattttct cataacaaag cagtataaac ctgcaagagc aaatttttgg ttaggggaga
     8821 tcgagtataa acaaaaaaat tataacaatg ctattgttta ttataaaaaa agttcttctt
     8881 tgagtacaaa aggagattat ttcccaaaac ttttatatca tactgccatt tcattggata
     8941 aaacaggtga tacaaaaaca gcaaatggtt tttataaagc tttaaaaact aattatccaa
     9001 attcacccga agcaaaagct tcacctaata gaaaataaat taaggagata aaatggctat
     9061 agaaaaaaat agtgtagttt caatgtttta tgagttaaaa gatgcaaata caaatgaagt
     9121 tttagaatca aatttatatt ctcaacctat ttcttttatt ttaggcaaag gtcagatttt
     9181 agaaagctta gaagaagaag tgatgaagct tgattgccct agcaatgctg atgtggtaat
     9241 taaaaaagaa aaaggtttag gcgaatacga tgaaaatgcc gttcaaactt taccaaaaga
     9301 gcaatttgca ggtattgatt taaaagtagg tatggagctt tttggcgaag gtgaaaatgg
     9361 cgaaaccgtt cgtgtaactg taaaagaaat tggtgaaaat gatgtcacaa ttgattataa
     9421 tcatccttat gcgggtcgtg atttgctttt ttctttaaat atcgtagatg ctagagctgc
     9481 gagtgaagat gaaattctta caggtattat cgcaggaagt catagttgtg gttgtggaag
     9541 cggacatgga cacgatcatc atcacggaca tggacatggt ggcggcggtt gctgtggtgg
     9601 tggcggttgc ggttgtcatt aatgaatgct gcgtttatat ttccaggtca aggctctcaa
     9661 agtcttggca tgggaaaaga tttttatgaa aactctataa aagccaaaga actccttcaa
     9721 aacgcaagtg atttttgtaa gattgatttt aaacatttgc tttttgaaga aaacgaaaaa
     9781 ctcaatcaaa gtgaatttac tcaacccgcc atcgttttaa attccttaat ggcttatagt
     9841 gttttacttg aaaaaaaacc tgatttaagt tcgaaatttg ctttagggca ttctttggga
     9901 gaattttcag ccttagctgt caatggtgct tttgattttt tagaggctct ttctttggtc
     9961 aataaaagag ggcttttcat gcaagaagat tgtgcaaaag ttgaagcagg tatgatggtg
    10021 gttttggggc ttgatgatga aaaggttgaa gagctttgtc aaaaagcaca aaaagaaaac
    10081 aagcaaattt tcgctgcaaa ttataactgc gatggacaaa tcgttgtagc aggtttaaaa
    10141 cctgatttag caagttatga aagtgtattt aaagaagcag gagctaaaag agctatgctt
    10201 ttaaatatga gcgtggcaag tcattgtcct cttttggaaa atgcttcagc taagctttgt
    10261 gtggagcttg aaaaggtgtt aaaaccaaat tttaaagccg taatttctaa tgcaaatgcc
    10321 aaaatttata caagcaaaga agaagccctt gagcttttaa aagcacaact tatctctcct
    10381 gtgctttata aacaaagcat taaggcatgt gaaaatgaag tagattattt catagaattt
    10441 ggcgcaagtg tgcttaaggg tttgaataaa aaaatcactt caaaagaaac ttatgcttta
    10501 acaaatatga atgatattga tgaattttta aaggttgtat gatgaaaata gcaattttag
    10561 gagccatgag tgaagaaatc actcctttac ttgaaacact taaagattat acgaaaatag
    10621 aacacgctaa caatacttat tattttgcaa agtataaaaa ccatgaactt gttttagcgt
    10681 attctaaaat tggcaaggta aattctactc ttagtgctag tgtgatgata gaaaaatttg
    10741 gcgcacaagc tttgcttttt acaggagttg caggtgcttt taatcctgaa cttgaaattg
    10801 gcgatttgct ttatgcaaca aaattagctc aatacgatct tgatattact gcttttggac
    10861 atcctttggg ttttgttcca ggtaatgaaa tttttatcaa aaccgatgag aaattaaaca
    10921 atcttgcttt agaagttgct aaggaattaa atatcaaact gcgtgcaggc attattgcaa
    10981 cgggtgatga gtttatttgc gatgaagcaa aaaaagcaaa aattagagaa attttcaatg
    11041 cggatgcttg tgaaatggaa ggcgcaagcg tggctttggt ttgtgatgct ttaaaggtgc
    11101 cttgttttat cttaagagct atgagtgata aagcagggga aaaggctgaa tttgattttg
    11161 atgagtttgt gatcaattca gctaaaattt cagccaattt tgtgcttaaa atgtgcgaga
    11221 aattatgata aatcttagca aaaaactcat acgccaagtt gcacaagcta atgctaaatt
    11281 tggacttatt aaagatggag atagggttct tttagggctt agtggcggaa aagattcttt
    11341 ggctttagcc catcttttaa atcgtatgca agctcacgct ccttttaaat ttgaacttga
    11401 agcggtaact ttgagttatg gtatgggcga ggattattct catcttcatg cacattgtga
    11461 agaacacggc attaaacata gcgtgcttga ttcaaatatt tatgaagttt caggcgatac
    11521 cataagagaa aattcaagtt tttgtagtta tttttcgaga atgcgtcgtg gagctttata
    11581 tacttacgct cttgaaaaag gttttaacaa gcttgctata gctcatcatt tagatgatgc
    11641 agcagaaagc ttttttatga attttattca taatggagct ttaagaacct tagcgcctat
    11701 ttatcaaagc aaacgcggta taactgtgat acgccctttg atttttgtgc gagaaagaca
    11761 gcttagggat aatgctacgc aaaatgaact tagcgtgata ggaaatgaat tttgtcctgg
    11821 tatgaaactc agcgaaaaaa atgtgaaatt tccacacgct agagaagaag ctaaacagct
    11881 tttagcaaat ttagaaaaag atcatcctaa gctttttaca agcttaaaaa ctgcttttac
    11941 aaatttacac acagaaagtt tttggcttca aaaggcataa aagcatgaaa aaagcttttg
    12001 ttttagtgga ttatcaaaat gattttattg atggaagttt aggttttgat aaggctttaa
    12061 aaatcaaaga aaatattctt aaagccttaa atcaaatcga ttttaataac acgcatttgc
    12121 ttttaaccta tgatacgcat gatgagcatt atctacaaag taaagaaggt ttaaatttac
    12181 ctgtaaaaca ttgcattaaa gagagtttgg gttggcaaat gccaaaggaa tttgaacctt
    12241 ttttacaaaa agctcataaa attttttata aaaatacttt tggtagctta gaattagcta
    12301 atttcataca aaaaagtgat tatgaagaac ttcattttgc agggcttgtt tctcatattt
    12361 gtgtgttttg taatattatt ttagcttttg gtgctaagcc taatgcaagg ataattttac
    12421 accaaaattt aagtgcaagt tttgatgaaa atttagaaaa atccgctttt gatatactta
    12481 gggcttatgg tattgaaatt gtttaatgca aggctttata cttcatactc aaaaagttaa
    12541 agatgaggat ttgattgttt atattttaag tcctaaaatg cttattaagg cttatcgttt
    12601 ttatggactt agacattcta gtattttaag cggctataaa atcgactttg ctttagaaga
    12661 aaatcctagt tttttaccaa gacttaaaga tgtattgcat ttgggatttt tatggattat
    12721 gcaaagggat aaaatgctta tttggcaaga atttatccgt cttttatata ggcacttaaa
    12781 agatgtagaa gagcttgata gtttttattt tgatttactt gatgagtgtg tgaaaaggtt
    12841 tgaaaaacaa aatccaaagc gtgttattgt tgatgcttat ttaaaaattt tggaatttga
    12901 aggaagattg cataaagatt ttttttgttt tgcctgtgat gagaaaattc aaaattccat
    12961 tacattgcta agggcttttt taccttcgca ttctcaatgt gctttaggat ttgagtttga
    13021 agagaaaaaa ctaaaacaat tttatagtag taaaaattgt gcgatttttg atgatgaaga
    13081 aatagaaaat ttatatcatt tgattaagga aggtttatga tattaagtga tgaaaaatgt
    13141 gattttttag aatctatagc aagtttttta agtcctaaag atgtggagct tgtctttgtg
    13201 gatagtaaag aaatgcaaga aattaactta gagcaaagaa aacaagataa aaccactgat
    13261 gtactttctt ttccacttga aaatatcgat gagagtttgc ctttgggttc tgttgtgatc
    13321 aatgtggatt tggcaaaaga aaaggctaaa gagttagggc atagctatga agaagaaata
    13381 agcttgcttt ttatccacgc tatgcttcat ttgttaggtt ttgatcatga aaatgataat
    13441 ggagaaatga gagaaaaaga gaaagaactt atagagcatt ttaatttacc taaaagtttg
    13501 attgtaagga ctttggaaga ttaagtaaga tttttttcaa gggctagaag acttgcgctt
    13561 tatattttaa atatatgagt aaaaatatta aaaaaaatca tttttgccga tttactttag
    13621 aataaaattt attccaaggt gataaagatg atagtatttc ctctaagctc ttttaataga
    13681 tattttggaa acaatccttt gcaaacactt accaaaataa gagatgaaag tattgaaaat
    13741 ggaaatcccg agcttacaaa aaaacaaaga gaagaattag gtaatgattt gatagatttg
    13801 tataagattt ctaaaaaatt cagcgataaa atagaattag tcgagggttc aatagaagat
    13861 aagcttagaa acaatgaatt accagaatca gaagttaaaa atttatttca atggatggat
    13921 gaaaatgcta aacaccctcg ttggatgcat attgatggcg tgagttatga tgaagcttat
    13981 gttaaaattt ttcacacaag caaaagtata gatgaattta aagaaaaata tcttgagctt
    14041 caaaaaaaat attttgttga ttttaacaat attgattcat cgcagaaaaa actgcaagaa
    14101 acttcagaag aagacaaaaa agctttcaaa cctatacaag tagaaagtaa aagcgaaacc
    14161 tacaaagatg ataataaaat gaatgagctt ttaagaaaac tactagaaac taaatttggc
    14221 acaagcgatg agctagaaat tctttttggt atgaatttta gcaatgataa tgcaggggaa
    14281 tttaataaaa ttctttctca aaacacttca gcaaaaatta tagatattaa ggcttaagat
    14341 tttttaaatt ataaaaatca atcaagttaa actaaaaaat tcttctattt tttttcgcat
    14401 ttcttcgaca ttgtcgatac gattaacggt atctctaaag gctgaagcgt ctttatgccc
    14461 tttagaatac tcgtgtaaat gcttgcgaaa tatacttacg ccttgatctt tgtagtgttt
    14521 tatcatttca tcaaaatgag tgagtatgat ttcttttttg agtttttcat ctacactttt
    14581 accgcttttg atttcataaa atatccaagg atttcctacg cttgcacgcc ctatcatgag
    14641 tccatcacat tttgtgattt tataaacttc tttagcgttt tgtgcgttaa tatcgccatt
    14701 tgcaatcaca ggaattttca cgctcgcttt agcactagca atggatccat aatcggcttt
    14761 tccgctataa agctgttttc ttgtgcgtcc gtggatactt ataaaatcca cccccaagct
    14821 ttcacaaatt ttagccattt tttcaggata tttttcatta aatcctagtc gaaatttcac
    14881 acttgtaagg ctttttttat tgttttcttt aatcactcct acaagatttt taaaaagctc
    14941 taaattttct agcaaagcac tgccagcaca ttgtttaaca actttattta cagggcaacc
    15001 gcaattaaaa tcgatcccat ctacaaaatc catttcattt agcatttgca ctgctttttt
    15061 tagcacttct ttatctccac ctgcaatttg gactatataa ggattttcta attcagctct
    15121 ttctagcata tgtaaagttt tagaactttc ataaactaag gcattagaac ttatcatttc
    15181 acttatggta atatcagcac caaatttttt tactacatta cgaaaaggca gatctgaaaa
    15241 acctgccata ggggctaaaa acaggggttt tttgctaaaa tctatcattg tatgagttga
    15301 tttagatcga ttttgatatt tttttcacgc aaggctaaaa aggctttaaa atcattaaat
    15361 tttttatcat cattgtgaat ttgttctctt aactcatcta aaagtccaaa ttcagccaaa
    15421 agatataaat atgctcttaa agcttcgctt ttttcatttt taattttgtt aaaaattcct
    15481 aaaatagcat caggatttaa aagtttagta cttagttttg ctgcattaag atagtctttt
    15541 tcgcttaata tgttgtgtga aagtaaaact tcatattctg ctacactaag ttctaaattt
    15601 ccttctttaa aacgcttgat aagtgtgaga acttcagaag gctttttagg gatttttaca
    15661 tttttaattt gctcataact agctttttct ataagagtgt taaaagcaat ttcttcaaat
    15721 tcatctttga tttcattaag gtttttaagt ttgttatagg cataatttgc atcatttttg
    15781 agatgatttt tttcattttg caaatataaa acattgttat tttcgagttt aaatttgcta
    15841 aggttaaaaa attcgttttt atttaaacca tcaataagat ctaaaatttc attgatttta
    15901 tttgagtgtg gaattttttc atgtgttttt atggttttaa aaagttgtgc tacagatcta
    15961 aattcttttg tttgaaaagt ggttttaaga tctttttcaa ggagtaaatc ttgagtataa
    16021 gcttcaaatt tagctgcatc tttaaaaaaa tgcttaaatt ttaaataacg caaaaatcca
    16081 taaaatgcta tgtgtaaaac ggctaaaatc atataaataa ataaaggaat aacaagccat
    16141 atcataatag gtagttcaaa ggtataagtg ctgatattta gagtatagct tcctagttct
    16201 agatgccaag caaaggcaaa aataagtgct atataaataa aacttgcaag taagaagagt
    16261 ttaattttca tgtttttttc cttgttctgc aatttgacgg caagtgatac aatatcttgc
    16321 gtgaggtttg acttttagtc tttgagagtc gatttcatca tcgcaagatt cgcaaattcc
    16381 ataagtgccg tttttgattt tatctaaaga atcttcgatt tctataagtt cttctttgag
    16441 attggtgctg atagcaaagt caatttgaga gcctgtttct atgacagaaa aatctacact
    16501 atcgcttggg acgctattgt gaagagcttc gatttcattt gaattgcttt gcaaattttc
    16561 taagatagct ttttttcttt cttctaaaat atttttgaaa ttttgtattt catttttttt
    16621 cattttaaaa ctttctattt gtgataaggg tgattgttgt tgatgcaaaa tgcacgataa
    16681 atttgttcta aaagtaaggt tttaacaaat tgatgtgcta aagtaagttt gcttaatgat
    16741 agtctaaaat ccaaactttg attaaattct tctcttaaac cataagcacc tcctataaaa
    16801 aaacttaatt catttttatc ttggatgagt tttgcaaatt ctatacttgt aagatctttc
    16861 cctttttcat caagagcgat acaatagcct tttttataag gcataaaagc ttcttcatag
    16921 cttttttttg cttctatggc atttaaattt tgagctaagg ctattttttt attaaaaaca
    16981 tttatttctt ttaaagtggc gtatttggag atgagtttag agtatttctc actacaagtt
    17041 ttaaattcat cacttttttg aatacaaaag atattaactt gcaaattatt ttccactaaa
    17101 aaattttagt acatcgctaa gatattgttt ttgttctcct ctttcaacta tggcatctat
    17161 aagtccatgt tctaacaaga actctgcttt ttgaaaacct tcaggtaaat ctgctcctat
    17221 agtttgttta ataactcttg caccagcaaa acctactaaa gcttcaggtt cagcgatgat
    17281 taaatctcca agccaagcaa aagaagcact tactccaccc atagtaggat cggttaaaat
    17341 gctaatataa ggaagttttt ctttgctaag aagtttaagt gcagcactag ttttgctcat
    17401 ttgcattaaa gaataagtac tttcttgcat tctagctcca ccgcttgcac ttacgatgac
    17461 aagagaagtt ttgcttgtga tagctctttg tatagctcta acaatttttt ctccttcaac
    17521 agaacctaaa gatccgccca taaaagaaaa atcaaataca acaagttggg tttttaaacc
    17581 attgatttca cattctccac tgataacaga actttttcta cctgttttac tttcaccttc
    17641 gctaaggcgt tttttatagg atttgctatc aacaaatttt aaaggatcta tagcttctaa
    17701 atttgcatca tactcaataa aactgccttc atcgcttaaa agtttaatac gttcatcagc
    17761 tgaaattctc atgtgataat tgcatttagg acaaacatta aaacaagatt ctatttcttt
    17821 ataatacatc aaagcatgac aactttggca ctttacccag tgatttggag cttctttaat
    17881 actaggttgt tgtcttctta tttttgaaaa aatatctgca aaattcatat attcacctaa
    17941 ttatttttta aaaattctaa gattatatca aaaatttttt tgtcttggct taggagaagg
    18001 aaattttcat ttttttctat atataaattt tgatgaattg ctaaagcagc tgctgtatca
    18061 aaaattcgtg tttttccaag aattaataca aaactaaaat acgaagcata agcgagactt
    18121 aaggctgttg cacccaaaga gcgaaatttt aattgatttt ttgttaaaaa atcgagaagt
    18181 tctggataaa gtgaaatttt ttcaactata cctattttag aaaatagatt aggtgttaag
    18241 ggtgagtatt ttggatcgga aagattggat ttaaaggctt gtttgttatt aaaagcaaaa
    18301 atttcttgac tgacaagatt gcaaacaaaa gcgctttttg cctgatcttt ttccataaga
    18361 gctatagaag ttccataaaa tggtatttta gaaacaaaat ttgaacttcc atccaaagga
    18421 tcaagaatca tttgttttgg gctagctttt ccgatcaatc cgctttcttc agaaaaaatt
    18481 tgtccaaaac aactaagata ttttatgaaa atttgttcac attttaagtc aagctcatag
    18541 ccttgatttt tatcatagcc taatttagag caaagtttaa gatcattttg tgggatattg
    18601 tttagatact tgcgtatttg caaatttgca ttcaagcaag catctaaaaa ttctttcatt
    18661 aaaagcgtgt tccaagatta aattcaaaac tattagtatc atcacctttt ttatcattaa
    18721 gaggtttggc aaatacaagt tgtaaaggtc caataggtgt aatccattca atgcctatac
    18781 ctgtactcat tctttttatt tcatctaaat ttttacgccc tatcatacca taatcaaaaa
    18841 acacgctacc acgaagtttg attctatcaa tcaaaggaaa actaagttct acggaattgg
    18901 caaaagctat agttccacct acttcatctc cccattgatt tttaggactt actgttctgc
    18961 tttcaaaacc gcgtatcgat ctaataccac ctaaataaat tctttggtta attggtaaat
    19021 aaccttcatc ccatacttta taaaaactcg ctttatagcg ataaataaga tcatatccta
    19081 tatagtcttg caaaccttga taaaagttaa atttagagct tgatgaaata aattcttgat
    19141 ctccgccaag tccagcgtat tctaaactag ttgaagcaat aatacctgat cgtggcagat
    19201 aataatcatc tgtattgtta aaggtgattg ctggagttat agagctttta atacttttgc
    19261 caagttcata tcctgttctt aaaagagttg gacttaagtg atatatatcg ctttgttcaa
    19321 gattataagt taagcttaca ttatagtatc ttgcaaattg gcgtccaact gttatatcaa
    19381 agccgtaatt tttttctgaa taattatccc attcatagtc atttgaataa agtgttccac
    19441 ccagactata ttgactatca agaacgcgtg gatttacgag actaatcctt cccgataaag
    19501 tatcatcgct tttatctacg cttacagagc tttttattcc tgaaccaaag atatttgtat
    19561 ccgataaaga agcgttaagc aaaataccat cgcttgatcc atagccaatg cctccagaaa
    19621 tagctcctgt agaagcttct ttaacatcaa caatcaaatc aatatgtgta ttatcaactt
    19681 tttcttcttt gatatttaca tcgtcaaaat aagaagttct ttttaaagca ttttttgact
    19741 cgcttaagtc tgttctattg tataaattac cttctgttat atataattct cggcgtatga
    19801 cgcgatctac ggtgcgtgaa tttcctgaaa taataacatt tcttatataa actttatcgt
    19861 gagggattac tttaaataca acggtggctt cttgagtttg atcatttttt tgaatatcag
    19921 gatagacttc tacaaacgca taacccaaat cagcactttg tgtttctatg gttttaacat
    19981 cttttctaat gtcttcgata ttgatagttt tgccagcgct tgatcttaaa tcttttacgg
    20041 tttgtgcatt ttgcttatca tcaaataaag gattttctat gcttatactt ttaattttat
    20101 aaggctttcc ttctttgata aaataagtca aatttgcttg ataagtatct gtgtaggttt
    20161 taagataagg ggaggatact tgaacatcta aatatccttt tttcatatat tcatcagcaa
    20221 ttcttgaact atcgttacta agttcaaaaa cttttaattt tccatcattg cgtccccaca
    20281 tccatcccat aaattctttt tctttgttaa caacagcagg ttctatatca gaatatgaaa
    20341 atttctttgc tccacttaaa tgaacattat caataatgat attttcacca cgatttacta
    20401 taaattcaag ctctagtcca tcagtatttt ctaaagtctt ttttttgtat tctacaatag
    20461 tatcaaaata actttttgct tcataataag ctttaatgcg ttcaatagct tcttttatac
    20521 ttccttcatc aagtagtgta cctcttttaa tccctaaaat actttcaact tgttttctat
    20581 cattggaagc tatacctgtt atactaacct ttgctatagt tggtttttca gtaactataa
    20641 tttccaaaat tccattgttg ttttctactg caatattttc gaaataattt tgtttataaa
    20701 gattaagaat agcagtgttg atttttgcag gatttatttc ctcgcctatt ttaagccccg
    20761 cgatatttat agcgcttgtg ttcgataaat gatttaatcc gataaattta atatctttaa
    20821 tggttgctgc attggccata gcaactaaag cacaaatact aataagatgt tttttcattg
    20881 attttttacc taaagcttta ttaaaagctg tataatagca aaaaaaattt aacaaaaaaa
    20941 ctaaggtaga aagtatgaaa atagcaatta tagggcttgg gcttatgggt ggatctttag
    21001 ggctttgttt gaaagaaaat aagcttattt cttgtgttta tggtatggat ttaagcaaag
    21061 aaaatgaaaa agatgccctg caattaggtc ttattcatga gcttatagaa tttaaagatt
    21121 tagctttatg tgatatgatt tttgtcgcaa ctcctgttga tgctattata gcaattttgc
    21181 aaaagttagt tgatttgcct tctaatgtaa caattataga gcttggaagt acaaaaagaa
    21241 aaattataga aagtttgcct aagaatttaa tcaaacaaac tctttttgct catcctatga
    21301 caggaactga aaattcaggt ccaaaagcag cttttaaaga gctttataaa gatgcagttt
    21361 gtgttctttg tgatagtgaa atagctgatg atttacatca aaaaagagcg gtagaaattt
    21421 tttctcattt agggatgaaa attgttttta tggatagtaa agcccatgat catcatgctg
    21481 ctattatttc tcatttgcct catgttataa gtttttcttt ggcaaatttt gtaatgaagg
    21541 aagaagataa aagaaatata gttcatttag ccggaggatc ttttaaaggt atgagcagaa
    21601 ttgccaaatc atcgccacaa atgtgggaaa gtattttttt acaaaataaa gataacttat
    21661 taagttctat tgattttttt caacaagaat tagagagatg taaacaaatg atacaattag
    21721 acaaaaacga tgaattaaga gaatggatga aacaggctaa taccctaaga gaaattttat
    21781 aaatttgcta gatatttact gaaaatataa tagaatttat attaaaagca acaaaaacat
    21841 tgaaaatttt taaggaaggt tatggcaaaa agaaaaggca aaacttattt atctgtttta
    21901 attttagttt taatagcaat tttgattttt tttatttcaa gattaagtat ttttgaaaaa
    21961 aatcctcctc aaattttaat gccagatgtt gtatatactg atcttaaaaa acctatttta
    22021 gtgcatatta aagatgatga aagttctatc aaaaacgtac aaattatatt gcataaagac
    22081 gacaatacta gtgcaatggt tatagcagat gaaaagattt ctaatttaaa agatattacc
    22141 ttacaagttg ctttgccaaa atttggttac aaagaaaatg taaaatcttt tgttttggag
    22201 gcgatagcta aagattctag tttttggaat ttttttagtg gcaatgaagc aagaaaacaa
    22261 attgcggtat tagtagataa tacggctcca aaaatcaata tcataagcaa ttcttaccaa
    22321 atcgagcaag gtggtgctgg ggcagttgtt tttaaggctg atgatgctaa tttagataag
    22381 gtgtatatag aaacaaataa aggtaaaatc tttaaagcca caccttatgt aaaagaagga
    22441 tattatgcgg ctttgattgc ttgggatgca agagatgagg aatttcgtgc atttgttatc
    22501 gctacggata aagcgggcaa tatttcaaaa gaacgtataa ggtattattt tgttaatcgt
    22561 aaatatcgtg tttcaaatat caatctaacg gataaatttt tagatggaaa gattgagaat
    22621 ttagcaaatc agtacgctcc aaaagataat aatctcaatc gttatgaaaa atttaagttt
    22681 gtcaatgaaa ctttaagaaa tagcaatgaa aaacttatcc atgaaatcac ttcaaaagta
    22741 cctgaggaaa aaattgataa ttttgatttg aatttatttt tacctcttaa aaatggtatg
    22801 aaagtagcgg attttgctga tcataggtat tattcttata atgggcaatt tgtgagtgat
    22861 tcttatcata tggggcttga tctagcaagc gtagcacaag ctcctatcat aagtaataac
    22921 gcaggcaagg ttgtttttgc tgctgaaaat ggaatttatg gtttaaattt aattgtttat
    22981 catggttttg gagtatatag tctttatggg cactgttctt ctaaaaatgt tgatttagat
    23041 gaaatgatta ataaacaaag cattataggc aaaacaggaa caagtggttt agccttaggc
    23101 gatcatttgc attttggagt tttggttcaa ggggttgaaa cgcgtcctga acaatggcaa
    23161 gataaaaaat ggatagaaaa taatatttac aatgttttaa atgatggtaa aaagataatt
    23221 ttaggaaaaa attaatgaaa caattaactt tagcaaaaac tgtcaaaggc gtaggtatag
    23281 gacttcataa gggtgaaccc atagaaatta ctttagagcc tttagaagca aatagtggta
    23341 tagtattttt tagaagtgat cttaatgcaa gctataaggc aagtcctgaa aatgtgatca
    23401 atactcaaat ggcaactgtt ttaggagatg aaagagggtt tatttctaca atagagcatt
    23461 taatgagtgc gattaatgct tatggaatcg ataatgtacg cattgtttta aatgcaaatg
    23521 aagctcctgt tatggatgga tcaagtatta gtttttgtat gatgcttgat gaagcagggg
    23581 taaaagaact tgatgtgcct aaaaaaatta tggtaattaa aaagcctata gaagtaagag
    23641 atggtaataa atttgtgcgt ttaactccta ctaaagaacc ccgtattaat tacacaatta
    23701 aatttgacaa tgctgtcata ggtgaacaaa gttacaattt tgaattcagc aaaaaaaatt
    23761 atatagaaaa catagcaagg gctagaactt ttggtttttt aaaagatgtt caagctctta
    23821 ggagtatgaa tttagcacta ggtggaagtt tagaaaatac tatagtagta gatgaaaatc
    23881 gtattttaaa tcctgagggt ttgcgtttca aagatgagtt tgtaagacat aaaattttag
    23941 atgcaattgg agatttaacc ttacttggat atcgtgtttt tggagattat acttcatatg
    24001 ctgggagtca tcatttaaat catttactta ctaaagaagt tttaaaagat aaagatgctt
    24061 atgaaattgt aagccttgaa aaaacaaccc aaaaagctta tgaaaaggta tttgcataaa
    24121 aacttctctt ttacttaata ctttatctaa gcctttaatg atcggaattt atcaagatga
    24181 taaacttata aaaacttata aaagtgaaga aaaagcaagc gaatttttac caaaaatttt
    24241 agatgaattg cttaaagaat atgattttac aagtttaatc tatgctaatg gtccaggttc
    24301 ttatatgggg attaaaattt cttatgtaag tttgagtact ttaagtatag taaaaaatat
    24361 tcctttattt gcggtgagtg cttttgaatt aaatggctat aaacccataa gtgcaaataa
    24421 aaatttttgt tttgtatata aggaaggtga aatttgttta gagcaaaata tcccagcaga
    24481 gtttttttta ccaaaaaatt tacaagagct taaactaaat aatgataatc ttccctttta
    24541 ttttttagat gcaatttagg atgaaatttg aaaattttag ttccagctac gagtgcgaat
    24601 ttagggccag gttttgattg tttaggactt agtttaaagc tttttaatga aactcaaatc
    24661 caaaaatcag gtgtttttag cattagtatt ggaggcgagg gaagtgataa tatttttctt
    24721 aaaaaaaaca atatatttgt aaatattttt tatgaaattt atgaaaaact aagcggaaaa
    24781 aaagataatt ttcgttttat ttttcaaaat aacattcctc tttcaagagg attaggaagc
    24841 tcttcagctg tgattgttgg agctattgcc agtgcttatt atatgagtgg atttaaggta
    24901 gaaaaagaac gtattttaga tgaagcttta atttatgaaa accatccaga taatatcgct
    24961 ccagctactc ttggtggttt tgtgtgttct ttggttgaaa aaaataaagt ttatagtatc
    25021 aaaaaagaga ttgataaaga tttagctgct gtggttgtga tcccaaattt ggcaatgagc
    25081 acggaacaat cacgccaagc tttggccaaa aatttaagtt ttaatgatgc ggttttcaac
    25141 ctttctcatg cttcattttt aaccgcttgt tttttggaga aaaaatatga atttttaaaa
    25201 tttgcaagtc aagataagct ccatgaaatc aatcgtatga aaaacttacc cgagcttttt
    25261 gaagtgcaaa aatttgcctt agaaaataaa gctttaatga gcacactttc aggttcggga
    25321 tcgagctttt tttctttagc ttttaaagat gatgctttag ctttagcaaa gaaaatacaa
    25381 acaaaattta aagattttcg tgtgcaatat ttagaatttg atgataatgg ctttgaaatt
    25441 tgctaaaaaa tataaaaaaa agatataatt ttgaaaaaac atataccaat tagaatgtgc
    25501 atagtgtgta aaaaccgctt tgagcaaaat atgttattta gatttaaagt tgttttagga
    25561 gatattgtgc ctaaagcaga acatggaaga agcggatatt tatgtcaaaa ttgtattgag
    25621 agagaagata aagtcttaca aaaagcattt tctaaaatat gtaaaaattt aaatactaaa
    25681 attactcagc aaggacttaa ggagatattt ttaaatggca aagattagaa ttcatgaaat
    25741 cgcaaaagaa ttaggttatg atagtaagga aattattgaa aaggcaaatg aattaggact
    25801 tggaattaaa acagcatcaa atgctgtaga acctgagatt gcggcagcta tttatgagta
    25861 tatacaaaca agagaaattc cagaagcttt taagaaaaat atcaaaactc ctacagcaaa
    25921 aaagcctaaa aaagaaaata taaaagaaca agaaaagcta aatgaatctg aaaaaaaaga
    25981 acctaaaaaa gaacctaaaa aagaagaaaa gcttaaacaa gaagttaaaa aagaagaatt
    26041 aaaaattgaa aaagaaaatg caaaagagga agaaaaacaa gaaattattg atgctcataa
    26101 gccacaaagc cttgctagtg caactttagc caaaagacgc ggacttgtta ttgttaaaaa
    26161 gaaaaaagac gaagaagaaa ttcaagttaa aaaagaagaa gtaaaaaatt caaatgatat
    26221 atctatcaat aatgaagagc gcttaagttt aaaaactatg ttttcaaatg ctgatgagag
    26281 tttaaagaaa aagaaaaaag aaaaaaaatc ttttgttgcg agtaaaaaag aaagtaccga
    26341 aaaaatgaat tttttagatg aacatgattt tggtgatatt tctttagatg atgaagatga
    26401 ggtagtatta cctgatttta gtgtaaaaga acaagaaaaa ccacaaaata tcaataaaaa
    26461 acaacctaat tttataagac aagctgttgg aaattctgcg ggttttgggc ttgaaggtgg
    26521 aattcaaaga agaagtcgta aaaaaccatc taaaaagatt gaaaaaaagg aagtagaaga
    26581 agtaggtagc gttgctattt ctaaagaaat tcgtgtgtat gaattcgctg ataagatagg
    26641 aaaaagcact agtgaagtga tttcaaaact tttcatgctt ggaatgatga caacaaaaaa
    26701 tgatttctta gatgaagatg cgattgaaat tttggctgct gaatttggta tagagatcaa
    26761 tatcattaac gaggctgatg agtttgatta tgtaaaagac tatgaagaag agactgatga
    26821 aaaagattta gtgactagag cacctgtgat taccatcatg gggcatgttg atcatggtaa
    26881 aacttctttg ttagattata ttagaaaatc acgcgttgca agtggtgaag cagggggtat
    26941 tactcagcac gtgggtgctt atatggtaga aaaaaatgga cgtaaaatta cttttattga
    27001 tactccaggt cacgaagctt ttactgctat gcgtgcaagg ggtgcaagta tcactgatat
    27061 tgtaatcatc gttgtagccg cagatgatgg ggtaaaacca caaactaaag aagcgataaa
    27121 tcatgctaaa gcagcaggtg tgcctattat tattgctatt aataaaatgg ataaagaagc
    27181 agcaaatccc gatatggtaa aaactcaact cgcagaaatg gaaatcatgc cagtagaatg
    27241 gggcggatct tatgaatttg taggagtttc ggctaaaaca ggaatgggga ttgaagattt
    27301 gcttgaaatc gtgcttttac aagctgatat tttagaactt aaagccaatc caaaaagttt
    27361 tgctaaagca agcattatag aaagttctgt gcaaaaaggg cgtggtgcgg tggctactat
    27421 catcgtgcaa aatggaacac ttactatagg aagtaccgtg gttgcaggcg aggcttatgg
    27481 aaaagtgcgt gcgatgagcg atgatcaagg taaagcctta aaagaaatta aaccaggcga
    27541 atgtggggtt atcgtagggc ttagtgaagt agcagatgca ggtgaaattt taatcgcagt
    27601 aaaaaccgat aaagaagcaa gagaatatgc taataaacgc cacgaataca atcgccaaaa
    27661 agaacttagc aaatccacta aagttagcat tgatgagctt ggagctaaga tcaaagaagg
    27721 taatctaaaa gccttgcctg ttattttaaa agctgatgtg caaggatctt tagaagcctt
    27781 aaaggcaagt ttagaaaaac ttagaaatga tgagattaaa gtgaatatca ttcatagtgg
    27841 agtaggagga atcacgcaaa gtgatataga gcttgcaagt gcgagtgaaa actctatagt
    27901 actaggtttt aacatacgcc caacagggga agttaaagag cgtgctaagg ataaaggcgt
    27961 agaaattaaa acttataatg taatttataa tcttttagac gatgtaaaag ccttacttgg
    28021 tggtatgatg agcccgatta tttctgaaga gcaattagga caagcagaga ttagacaagt
    28081 gatcaatgta ccaaaaatcg gacaaattgc aggttgtatg gtaactgaag gggtgattaa
    28141 ccgtggagct aaaattcgtc ttatccgtga tggagttgtg gtttatgaag gcaatgtgag
    28201 ttcactcaaa cgctttaaag atgatgctaa agaagtggca aaaggctatg aatgtggcgt
    28261 aggtatagaa gggtgtgatg atatgagagt gggtgattat atagaaagct ataaagaagt
    28321 agaggaacaa gcaagtctat gaacccaagt gagattaaaa aactacgcac tgaaagtatc
    28381 ttaaaagagc tgatccctga agctttagca aatttagatg atgaaaattt gaaaaatttg
    28441 tgtgtagtgg atgtagagtg taaaaaaggc agatacgatg cttttgtgta tcttgataag
    28501 atgtttttta atgttcatga gcaagaaaaa attttatctt ctttaaaaaa ggcaagtaga
    28561 gctttgcaaa attactgcat gagtgagcag ggctggtata ggtgtccgaa ttttcatttt
    28621 aaatttgatg ataggcttga gtatcaaaac catatggatg cactttttga aaaaataaaa
    28681 aaggataaaa atgaatcttg aagccctttg caaagaagca ggacttagtt tttatgatga
    28741 tgagctagta agtgaaaatg gtaaaaaaat ttatagaatt tatgtacaaa aagaaggcgg
    28801 ggtaaatctt gatgattgtg caaggcttag tgaaatttta tcgcctattt ttgatgtaga
    28861 gtcacctgta aatggagagt attttttaga agtatcttca ccaggacttg aaagaaaact
    28921 tagcaagata gaacattttg caaaaagtat aggtgaactt gtgaagatca caaccaatga
    28981 aaaagaaaaa ttcgaagcaa aaatcattgc tgtagatgat gaaaatatca ctt
//
LOCUS       DAPIWJ010000006        29008 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.006, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000006 DAPIWJ010000000
VERSION     DAPIWJ010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 29008)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29008)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29008
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.006"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            85..858
                     /locus_tag="RJ259_000210"
     CDS             85..858
                     /locus_tag="RJ259_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDV7365957.1"
                     /translation="MKQGDFTKVAKHYHNRPAYSPFLLEKLVACINDKNKNLKDLNIV
                     EVGAGTGKLTKMLGEMFGCQISAVEPNDNMREEGQKFTQNLSNISWHKGSGEETCMSN
                     NQADWVIMASSFHWTDPKKSLPEFNRILTGGGYFTAIWNPRHIVEGSVFDEIEKEIKH
                     IVPDLARVSSGTQNVKKWEEILVSTGDFTDCFFMECDYKEFWDKERYLGAWHSVNDIQ
                     AQAGEKRWKEILEMIEAKISHMQSIEIPYKIRAWTARKA"
     gene            910..1671
                     /locus_tag="RJ259_000211"
     CDS             910..1671
                     /locus_tag="RJ259_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HDV7365958.1"
                     /translation="MQKLVEQVWDYTKHAKFYSYRPNYAPKTIDMLISLVGKKDIKVA
                     DIGAGTGNLSIMLLERGCKVVSVEPNDAMREIGIERTKDQKIDWVRATGLNSTLQNSE
                     FDWVTFGSSFNVMDRNEALEEAHRLLKSEGYFSCMWNHRDLNDPVQKIAEDTIVEFVP
                     NYTRGTRREDQRPIIESRKDLFDNIVYIEEDFYFHQSIENYINAWKSVKNPYWDLETD
                     EGNELFNKISNKISQRLPKEFSIKYTTRCWSAKKI"
     gene            1686..4025
                     /locus_tag="RJ259_000212"
     CDS             1686..4025
                     /locus_tag="RJ259_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7365959.1"
                     /translation="MAELKFKTKAQNLKNLQTKLKKAKVLPLVLTSLEELISNEDKVL
                     QDIQTLKANRLIIRSSSLSEDSMKNSNAGAFLSLANIKADSKDELLKALYEVANSMPS
                     KSDEILVQPMLENITLCGVGFSVDKDNFSPYFCLQYDENGSNSSITDGSSKSAKTYYH
                     YRNYLEFKDIRLQKIIELIKELEVLYDCHFLDVEFAFAIQDDKEELFCLQVRPLVMHE
                     KNNLFHSLPKEALYRFYKRFESLKESRSRVLGDKAIFGVMPDWNPAEIIGLRPKRLAF
                     SLYKEIITDNIWAYQRDNYGYRDLRSHPLIHSFLGIPYVDVRLSFNSFIPKKLDENIA
                     QKLVNFYLDKLNKNHELHDKIEFNIVYSCYDFNSSKKLEELLNHGFNENEIKRLEFSL
                     LELTNKIINPRSGFYLKDIQKAYKLKERYDGIINSNFSLIDKIYWLIEECKRYGTLPF
                     AGVARAAFVAMQLLNSLVEIDFITKEEKDDFLNSLNTVSKNLSKQTNHLNFHNKDQFL
                     KDFGHLRAGTYNILSPRYDEDFELYFDADQKDSKVYLQDKAFVFSKEKTRALNALLKE
                     HGLEINACEFFDFLKQAIEGRELVKFEFTRLLSKAIVYIEELGKYYDIEKEDLAHLDI
                     KSILNLYSSLYSINPKEQFIEEINRNKKEYELTQAIKLPSLLCNADEIFSFYNHSIIP
                     NFITQKSITAFTAKENDKDLEGKIVLIYAADPGYDYLFTKNIAGLITCYGGANSHMAI
                     RASELGMPAVIGVGEENFEKYLKAKKINIECESEQIFCL"
     gene            4016..4618
                     /locus_tag="RJ259_000213"
     CDS             4016..4618
                     /locus_tag="RJ259_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HDV7365960.1"
                     /translation="MFIGITQRLICNDSYHEKRECLALDWGKLFNKDLFKNFTPLPLS
                     YEIDFSYYKHLIKAVILSGGNDLSFYSPNVLSKKRDLYEKQVIEICLEEKIPLLGICR
                     GAQMIAHYFNSHISPCENHIGKHEVFFSKEKFISNSFHNFAIEKLGEDLVELCLAKDN
                     TIEAFKHKYENIFGIMWHIERENGLNNIQILKEWFSLIKE"
     gene            4620..5381
                     /locus_tag="RJ259_000214"
     CDS             4620..5381
                     /locus_tag="RJ259_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP:phosphoglutamine cytidylyltransferase"
                     /protein_id="HDV7365961.1"
                     /translation="MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSA
                     GINEIAVVGGYLNDVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFILKCIEEKQ
                     DLIISYADIVYFQDCVQKLINAKEELAIVVDKSWRKLWSKRFANPLEDAETLKMTNGY
                     IIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYGMLDRDILYDNKNFENMYMTSF
                     LQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIDK"
     gene            5371..5883
                     /locus_tag="RJ259_000215"
     CDS             5371..5883
                     /locus_tag="RJ259_000215"
                     /EC_number="2.7.1.224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine diphosphoramidate kinase"
                     /protein_id="HDV7365962.1"
                     /translation="MINSPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDEL
                     REILGHYAYDRQGRIDMALKRAKFAKFLNDQGMMVIVTTISMFNEIYDYNRKQLKNYY
                     EIYIECDMHELIQRDQKGLYTKALNKEIDNVVGVDIEFDKPEADLVINNSCRNNLEEK
                     VELIIKKLAL"
     gene            5880..7949
                     /locus_tag="RJ259_000216"
     CDS             5880..7949
                     /locus_tag="RJ259_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HDV7365963.1"
                     /translation="MKYYSISKKLIANVRNFYTISLYKKNLKIKKDDLFFGWGRKKSG
                     LKAMNLAKKYKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATMPSKLENLL
                     NTCEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDNYFQKDEKRVLIITQTANDASL
                     EFGLAKDFKTLDMIKDAIKENPKSTIYIKIHPDVLSGKKQSDLDLNSLPKECILITEN
                     FNPIALLEFFDKVYTKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRMQKR
                     SLEEVFYAAYILYAEYFNPYLNQKSNIFDTIQTLAKYKDIEKANSNRLFFFGFSKWKR
                     KFVKPFFIAKNNEIIFLDFLDCLKNIQLKENDKFFIWGKRIDYNALKTTLIKKAQDEN
                     LLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEELLQNEIFD
                     ENMLNRAKNIIKILLENRFSKYNGLKHEDLKINVKTGQKIILIPAQVEDDASMILGGF
                     GLSTLDLLKEVRSKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSA
                     IKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRTRKLSLEELV
                     AGALIAYPRYINPKTKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRF
                     YEFLAKK"
     gene            7946..9130
                     /gene="kpsS"
                     /locus_tag="RJ259_000217"
     CDS             7946..9130
                     /gene="kpsS"
                     /locus_tag="RJ259_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide modification protein
                     KpsS"
                     /protein_id="HDV7365964.1"
                     /translation="MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKL
                     NFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHTKAIKVAKE
                     LGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
                     MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIY
                     NLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRG
                     YKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTK
                     VCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFL
                     DK"
     gene            9203..10324
                     /locus_tag="RJ259_000218"
     CDS             9203..10324
                     /locus_tag="RJ259_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF829 domain-containing protein"
                     /protein_id="HDV7365965.1"
                     /translation="MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKVDLSKIE
                     KNEQFPFFQISCEGVQTTYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIK
                     FGKESIYQLITGYYPFFYVLFSLLFSLVVAFGSFAFLQNYMHFSLAIIIGCFLGFLLN
                     HFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYE
                     LVLVAHSVGTIVCIEVLECILRQNLDLSLLHKLKILTLGECIPLVSYQKKADEFRKKL
                     EFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKI
                     KRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI"
     gene            10321..11682
                     /locus_tag="RJ259_000219"
     CDS             10321..11682
                     /locus_tag="RJ259_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HDV7365966.1"
                     /translation="MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYV
                     KMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRE
                     LLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMS
                     SKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRAKAGDVIRQVLS
                     DIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSL
                     TWTLYLLSLYPKEQEKAYEEITQVLQGGAIEISHLRQFKYLTNIFKESLRLYPPVGFF
                     AREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPF
                     GVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSK
                     RKL"
     gene            11679..12098
                     /locus_tag="RJ259_000220"
     CDS             11679..12098
                     /locus_tag="RJ259_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7365967.1"
                     /translation="MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLG
                     YLFIVIIGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVI
                     KITDFFQKDHCKRANKREQPVVDFIISRNLDKQTIGK"
     gene            complement(12099..12446)
                     /locus_tag="RJ259_000221"
     CDS             complement(12099..12446)
                     /locus_tag="RJ259_000221"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HDV7365968.1"
                     /translation="MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLA
                     GLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSIS
                     HDNGFAIAIVAIV"
     gene            complement(12446..12982)
                     /gene="fliL"
                     /locus_tag="RJ259_000222"
     CDS             complement(12446..12982)
                     /gene="fliL"
                     /locus_tag="RJ259_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HDV7365969.1"
                     /translation="MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSS
                     SSDESEVKEAPKEEAKADKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVK
                     CTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINE
                     ILTDGFIKNVYFTDFVVS"
     gene            13104..14474
                     /gene="pgmL"
                     /locus_tag="RJ259_000223"
     CDS             13104..14474
                     /gene="pgmL"
                     /locus_tag="RJ259_000223"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase PgmL"
                     /protein_id="HDV7365970.1"
                     /translation="MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVS
                     VGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSH
                     NPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILSLYVKFMCE
                     QFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAKPDGQFPNHAPDPTEEE
                     NLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTYVFCGDELCYLFAKNIPNPRILGE
                     VKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDG
                     IYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGAL
                     KGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESTVFSLFNEI
                     KARLKN"
     gene            14522..14899
                     /locus_tag="RJ259_000224"
     CDS             14522..14899
                     /locus_tag="RJ259_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 family protein"
                     /protein_id="HDV7365971.1"
                     /translation="MKKILVLLLLCAFAFGASECDRKIDRINKEISFSKAHNDTARTL
                     SLELALKQVQNDCAKDPMFYDKKLEAKKLKEQEVEKIEKELDALKEQKDYMSKAEYKA
                     KKEALKEQKEKIKKEIKEYIDNL"
     gene            complement(14930..15829)
                     /gene="nadD"
                     /locus_tag="RJ259_000225"
                     /pseudo
     CDS             complement(14930..15829)
                     /gene="nadD"
                     /locus_tag="RJ259_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009651038.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
     gene            15889..16887
                     /gene="gap"
                     /locus_tag="RJ259_000226"
     CDS             15889..16887
                     /gene="gap"
                     /locus_tag="RJ259_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HDV7365972.1"
                     /translation="MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYL
                     FKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLT
                     MAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCR
                     VLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVM
                     PELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDD
                     ERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA"
     gene            16890..18092
                     /locus_tag="RJ259_000227"
     CDS             16890..18092
                     /locus_tag="RJ259_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HDV7365973.1"
                     /translation="MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIP
                     TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKT
                     KAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAI
                     TKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDK
                     LIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPAC
                     SQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKG
                     SIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVK
                     ALRSKENE"
     gene            18089..18760
                     /locus_tag="RJ259_000228"
     CDS             18089..18760
                     /locus_tag="RJ259_000228"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HDV7365974.1"
                     /translation="MIFAANLKCNHTRASFKIYAKILNKTMGVKCDDIIVFPPSIAFL
                     ENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKF
                     DFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGV
                     SAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFI
                     KLIKG"
     gene            18764..19588
                     /gene="fabI"
                     /locus_tag="RJ259_000229"
     CDS             18764..19588
                     /gene="fabI"
                     /locus_tag="RJ259_000229"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HDV7365975.1"
                     /translation="MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALK
                     KRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENS
                     FLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVA
                     KAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNV
                     SIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG"
     gene            19592..21085
                     /locus_tag="RJ259_000230"
     CDS             19592..21085
                     /locus_tag="RJ259_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HDV7365976.1"
                     /translation="MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLS
                     LGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHE
                     TLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKA
                     KAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFAL
                     FGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKG
                     PYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEE
                     LKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYTFIEQ
                     NFDENPMPSKDFWKYLEISFILVKGEFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAE
                     KPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKTFGDNITKISSLKAS"
     gene            complement(21082..22923)
                     /gene="feoB"
                     /locus_tag="RJ259_000231"
     CDS             complement(21082..22923)
                     /gene="feoB"
                     /locus_tag="RJ259_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HDV7365977.1"
                     /translation="MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAK
                     TFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSA
                     ELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKII
                     ILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIH
                     KFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNTLGEFVKNNISNTFIASALADGI
                     IAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGF
                     GCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGI
                     YILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAG
                     TFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKGIEPIFQPLELDWKL
                     SVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIY
                     NPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN"
     gene            complement(22920..23144)
                     /locus_tag="RJ259_000232"
     CDS             complement(22920..23144)
                     /locus_tag="RJ259_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HDV7365978.1"
                     /translation="MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSS
                     LKNATIMVELDTSCVILRSDEAKTIEVNLI"
     gene            complement(23224..24564)
                     /locus_tag="RJ259_000233"
                     /pseudo
     CDS             complement(23224..24564)
                     /locus_tag="RJ259_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
     gene            complement(24573..25940)
                     /locus_tag="RJ259_000234"
     CDS             complement(24573..25940)
                     /locus_tag="RJ259_000234"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDV7365979.1"
                     /translation="MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKA
                     QAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFRVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQA
                     LPITFGHKVAIWLSELDRHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLE
                     NLGLEVPNISWQSTRDRFIELGFVLGNINATFNKIAHQLLILSHNEIDEVAEPFGKGQ
                     VGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMF
                     LMLSVVLANMKFALSDLEVKKDKMLKNLDTLKGFVLAERVMFALSDHYGKQHAHEIVY
                     ENAMLGIEQQKTFKEVLLADTRVSQVLKEKDIDALLDATSYVGYAPKLVDEFLAKIKN
                     SAILK"
     gene            complement(25950..27112)
                     /locus_tag="RJ259_000235"
                     /pseudo
     CDS             complement(25950..27112)
                     /locus_tag="RJ259_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
     gene            complement(27125..28564)
                     /gene="dcuC"
                     /locus_tag="RJ259_000236"
                     /pseudo
     CDS             complement(27125..28564)
                     /gene="dcuC"
                     /locus_tag="RJ259_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
     gene            complement(28568..28930)
                     /locus_tag="RJ259_000237"
     CDS             complement(28568..28930)
                     /locus_tag="RJ259_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDV7365980.1"
                     /translation="MSNYPKAIGPYSAYREVNGLLFISGQLPINPASGEIESSDIKEQ
                     TKQSLKNIGAILEENGISYDKVIKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAV
                     KDLPKKAKVEIEIIAQKG"
BASE COUNT        10151 a         3954 c         5052 g         9851 t
ORIGIN      
        1 atggtgatat ctatgaaaaa gacttgtaaa ttaataaaaa aaagttataa ttaatattat
       61 gtaatttaga gaaaggaagt aattatgaaa caaggggatt ttacaaaagt tgcaaaacat
      121 tatcacaata gacctgctta tagtccgttt ttacttgaaa aacttgtagc ttgtatcaat
      181 gataaaaata aaaatttaaa agatttaaat attgttgaag taggagctgg aactggaaaa
      241 cttactaaga tgttgggaga aatgtttgga tgccaaatta gtgctgtgga accaaacgat
      301 aatatgcgtg aagaagggca aaaatttaca caaaatttgt caaatatttc ttggcataaa
      361 gggagtggcg aagaaacctg catgagcaat aatcaagctg attgggtcat catggctagt
      421 tcttttcatt ggacagatcc taaaaaatct ctcccagaat ttaatcgtat attgacaggg
      481 ggggggtatt ttactgcgat ttggaatcct cgccacattg tagagggttc ggtttttgat
      541 gaaattgaaa aggagattaa acatattgtt ccagatcttg ctcgtgtaag cagtggcact
      601 caaaatgtta aaaaatggga agaaattctt gtttcaacag gagatttcac agactgcttt
      661 tttatggagt gtgactataa agagttttgg gataaagagc gttatcttgg agcttggcat
      721 tctgtaaatg atatacaagc acaagcaggt gaaaaaagat ggaaggaaat tttagagatg
      781 atagaagcta aaatttctca tatgcaaagt atagagattc cttataaaat aagagcatgg
      841 acagctagaa aagcataaaa tacctccttt tttcatcaag cttgtcaaag atgagaaaaa
      901 ggaaataaaa tgcaaaaact agtagaacaa gtgtgggatt ataccaagca tgctaaattt
      961 tatagctata gaccaaatta tgctccaaaa actatagata tgcttattag cttagttgga
     1021 aaaaaagata ttaaagttgc tgatatcggt gcaggaactg gaaatttaag cattatgctt
     1081 ttagaaagag gatgtaaggt agtatctgta gaaccaaatg atgcgatgcg tgagatcggg
     1141 atagaaagaa ccaaggatca aaagattgac tgggttagag caacaggctt aaactcaaca
     1201 ctccaaaata gtgaatttga ttgggtgact tttggtagta gttttaatgt aatggataga
     1261 aatgaagcct tagaggaagc gcatcgctta ttaaaatcag agggatattt ttcttgtatg
     1321 tggaatcaca gggatttaaa cgatcctgtg caaaaaatag ctgaagatac tattgtagaa
     1381 tttgtaccaa attatacaag gggaacaaga agagaagatc aaagaccaat tatagagagt
     1441 cgaaaggatc tttttgataa tattgtttat attgaagagg atttttattt tcatcaaagc
     1501 attgaaaatt atattaatgc atggaagagt gttaaaaatc cttactggga tttggagact
     1561 gatgaaggaa atgaactttt taataaaatt agtaataaaa tttcacaaag acttcctaag
     1621 gaatttagca taaaatatac cactcgttgt tggagtgcta aaaaaatata aaactaagga
     1681 aaaacatggc ggagttaaaa tttaaaacca aagcacaaaa tttaaaaaat ttacaaacaa
     1741 aattaaaaaa agcaaaagtt ctacctttgg ttttaacttc gcttgaagaa ttaatatcaa
     1801 atgaagataa agttttacag gacattcaaa ccttaaaggc taatagactc attataagaa
     1861 gttcttcttt aagtgaagat agcatgaaaa actccaatgc aggtgctttt ctttctttgg
     1921 caaatattaa agctgattct aaagatgagt tattaaaagc tttatatgaa gttgccaatt
     1981 ctatgccatc aaaaagtgat gaaattttag ttcaacctat gcttgaaaac attactcttt
     2041 gtggagttgg ttttagtgtt gataaggata atttttcccc ttatttttgt cttcaatatg
     2101 atgaaaatgg ttcaaatagc tctattacag atggaagcag taagagtgca aaaacttact
     2161 atcattacag aaattattta gaatttaaag atattagact tcaaaaaatt atagaactta
     2221 taaaagaatt agaagtttta tatgattgtc attttttaga tgttgaattt gcatttgcta
     2281 ttcaagatga taaggaagaa cttttttgct tacaagtgcg tcctttggtt atgcatgaaa
     2341 aaaataattt atttcattct ttaccaaaag aagctttata tagattttat aaacgttttg
     2401 agtctttaaa agaatcaaga tctagagttt tgggagataa agctattttt ggggtaatgc
     2461 ctgattggaa tccagctgaa atcatagggt taagacctaa gcgtttagct tttagtttat
     2521 ataaagaaat cattacggat aatatctggg cgtatcaaag agataattat ggttatagag
     2581 atctaagatc ccatccttta atccattctt ttttaggcat tccttatgtg gatgtaagat
     2641 tatcttttaa ttcttttata ccaaaaaaat tagatgaaaa tattgcacaa aaacttgtca
     2701 atttttactt agataagctt aataaaaatc atgaattgca cgataagatt gaatttaata
     2761 ttgtttattc ttgttatgac tttaatagtt ctaaaaaatt agaagaactt ttaaatcatg
     2821 gttttaatga aaatgaaatc aaaagattag aattttcatt attagaactt acaaataaga
     2881 ttattaatcc tagatcaggg ttttatttaa aagacataca aaaagcttat aagctaaaag
     2941 aaagatatga tggcattatt aattctaatt tttctttaat tgataaaatt tattggctta
     3001 ttgaagaatg caagcgttat ggaaccttgc cttttgctgg ggtggctagg gctgcatttg
     3061 tagcaatgca acttttaaat tctttagttg agattgattt tataaccaaa gaggaaaaag
     3121 atgatttttt aaattcactc aatacagtga gcaaaaattt aagcaaacaa acaaaccatc
     3181 ttaattttca caacaaagat caatttttaa aagattttgg acatttaaga gcaggaactt
     3241 ataatatttt atcgccaagg tatgatgaag attttgagct ttattttgat gcagatcaaa
     3301 aagatagtaa agtttattta caagataaag cttttgtttt ttcaaaagaa aagacaagag
     3361 ctttaaatgc tttacttaaa gaacatggac tagaaattaa tgcttgtgaa ttttttgatt
     3421 ttttaaaaca ggctatcgag ggtagagagc tcgttaaatt tgaatttact agattgcttt
     3481 ctaaagccat agtttatata gaagaattag gcaaatatta tgatattgaa aaagaagatt
     3541 tggctcatct tgatataaaa agcattttaa atctttattc tagtctttat tctataaatc
     3601 caaaagagca gtttatagaa gaaattaatc gcaataaaaa agaatatgaa cttacacaag
     3661 ctataaaact tccttcttta ctttgtaatg ctgatgaaat tttttctttt tataatcata
     3721 gcattattcc aaattttatt acacaaaaga gcattactgc atttacggcg aaggaaaatg
     3781 ataaagattt agaaggaaag attgttttaa tttatgcagc agatcctgga tatgattatt
     3841 tatttacaaa aaatatagca ggacttatta catgttatgg gggtgctaat tcacatatgg
     3901 ccattcgtgc ctcagaactt ggaatgcctg ctgttatagg agttggagaa gaaaattttg
     3961 aaaaatattt aaaagctaaa aaaataaata tagaatgtga aagtgagcaa atattttgtt
     4021 tataggtatt actcaaaggc ttatttgcaa cgatagttat catgaaaaaa gagaatgttt
     4081 ggctttggat tggggaaaat tatttaataa agatttattt aaaaatttta ctcctcttcc
     4141 tcttagctat gaaatagatt tttcttatta taaacatcta ataaaagctg tgatattaag
     4201 tggtggcaat gatttaagtt tttatagtcc taatgtttta tccaaaaaga gagatttata
     4261 tgaaaagcaa gttatagaaa tttgtttaga agaaaaaata ccacttttag gaatttgcag
     4321 aggggctcag atgatagctc attattttaa cagccatata agtccttgtg aaaatcatat
     4381 aggcaaacat gaagtatttt tctcaaaaga aaaatttata agcaattctt ttcataattt
     4441 tgctattgaa aaattaggcg aagatcttgt agaactttgc ttagcaaaag ataataccat
     4501 agaagctttt aaacataagt atgaaaatat ttttggtata atgtggcata ttgaaagaga
     4561 aaatggactt aataatattc aaattttaaa agagtggttt agtttaatca aggaataata
     4621 tgaatgcaat tatcttagca gcaggttttg gatcaaggct gatgccttta acaaaagatc
     4681 aaccaaagtg tatggttgag tataagaata aaaaaataat agattatgaa atcgaagctt
     4741 taaaatcagc aggtataaat gaaatagctg ttgtgggtgg atatttaaac gatgtgctaa
     4801 aaaattatct taataaatat gatattgagc atttttttat taattcaaaa tatgataaaa
     4861 ccaatatggt tcatactttt ttttgcgcta aagattttat attaaaatgc atcgaagaaa
     4921 aacaagattt gattatttct tatgcggata ttgtttattt tcaagattgc gtgcaaaagc
     4981 ttataaatgc taaagaagaa cttgctatag tagttgataa gtcttggcgt aagctttgga
     5041 gcaaacgctt tgcaaatcct ttagaagatg ctgaaacatt aaagatgaca aatggttata
     5101 ttatagaact tggaaaaaaa gctaatgcct atgatgagat agaagctcaa tatataggac
     5161 tttttaaatt ttcttatcaa tttctttccg aagttattgc tttttatgga atgcttgatc
     5221 gagatatttt atatgataat aaaaattttg aaaatatgta catgacaagt tttttgcaag
     5281 ctttaattga aaaatacaac aacgcaaaag cagtggaaat tgatggcaat tggtgtgaaa
     5341 ttgattttat gagtgattta gaggtgcaaa ttgataaata gtccttatat tatttggctt
     5401 actggtttag ctggaagtgg aaaaacaact ataggtcaag ctttgtatga gaaattaaaa
     5461 ctaaaatata aaaaccttat ttatctcgat ggagatgagt taagagaaat attaggacat
     5521 tatgcatacg atagacaagg tcgcatagat atggctttga aaagagctaa atttgcaaaa
     5581 tttttaaacg atcaaggtat gatggttatt gtcactacga tttcaatgtt taatgagatt
     5641 tatgattaca atagaaagca attaaaaaat tattatgaaa tttatataga atgcgatatg
     5701 catgaattaa tacaaagaga tcaaaaaggg ctttatacta aggctttaaa taaagaaatt
     5761 gataatgtag ttggtgttga tatagaattt gataaaccag aggctgattt agtgatcaat
     5821 aattcttgtc gaaataattt agaagaaaaa gttgaactta taataaagaa attggcattg
     5881 tgaagtatta ctcaatatca aaaaaactta ttgctaatgt tagaaatttt tacaccattt
     5941 ctttgtataa gaaaaattta aaaatcaaaa aagatgatct tttctttggt tggggacgca
     6001 aaaaatcagg tttaaaagct atgaatttag ctaaaaaata taaggctaaa ttcatacttt
     6061 tagaagatgg atttatccgc tcattaaact taggggttga aaatagccca agtttttcta
     6121 tggttaaaga tgatataggc atttattatg atgcaacaat gccttcaaag cttgaaaatc
     6181 ttttaaatac ttgtgaattt aaagatgaag aaatcaagca agctaaaaaa gctatagagc
     6241 ttatcaaaaa atataaaatt agcaagtata ataacaatct cgatattcca gataattatt
     6301 ttcaaaaaga tgaaaaacgc gttttaatca tcactcaaac ggccaatgat gcctctcttg
     6361 aatttgggct tgctaaagat tttaaaactc ttgatatgat aaaagatgcc ataaaagaaa
     6421 atcctaaatc tacaatttat ataaaaatcc atccagatgt tttaagtggt aaaaaacaaa
     6481 gtgatttaga tttaaattcc ttacctaaag aatgtatttt aatcactgaa aattttaatc
     6541 ccatagcctt gcttgagttt tttgataagg tttataccaa aacttctggt atgggttttg
     6601 aagctttgat gcaagaatgt gagtgtattt gttatggcat gcctttttat gcgggctggg
     6661 gtctaacaaa agataaatta gagtgtaaaa gaaggatgca aaaaagaagt ttagaagaag
     6721 ttttctatgc tgcttatata ctttatgctg agtattttaa tccttattta aatcaaaaaa
     6781 gtaatatttt tgatactatt caaactttag caaaatataa agatatagaa aaggcaaatt
     6841 ctaatagact ttttttcttt ggattttcaa aatggaaaag gaaatttgta aaaccttttt
     6901 ttatagctaa aaacaatgaa atcatatttc tagatttctt agattgttta aagaatatac
     6961 aattaaaaga aaatgataaa tttttcattt ggggtaaaag gatagattat aacgctctta
     7021 aaactactct tataaaaaaa gcgcaagatg agaatttgct ccattttact cccaaaattt
     7081 ctttagttga agatggattt attcgctcaa tctctttagg ttctgatctt acgcgccctt
     7141 tttctttaat tgttgatgat aaaggacttt acatagatcc aaataaagca agtaaattag
     7201 aagagctttt gcaaaacgaa atttttgatg aaaatatgct aaatagggca aaaaatatta
     7261 taaaaatctt acttgagaac cgcttttcaa aatataatgg cttaaagcat gaagacttaa
     7321 aaatcaatgt caaaacaggg caaaaaatta ttttaatccc tgctcaagtt gaagatgatg
     7381 cttcgatgat tttagggggt tttggcttat ctactcttga tttgcttaag gaggtgcgtt
     7441 ctaaaaatca agatgcttat atcatcttta agcctcatcc tgatgtgtta agtggcaacc
     7501 gtgtaggttt aaaagatgaa acactcatct tggaattttg tgatgagatt gtaaaagatt
     7561 gcagtatcga tagtgctata aaaattgctg atgaaattca cactattact tctacaagtg
     7621 gttttgatgc tcttttaaga gctaaaaaag tttttactta tggtatgcct ttttatgcgg
     7681 gctggggttt aacaaaagat aaatatagat gcgaaagaag aacaagaaaa ctaagcctag
     7741 aagagcttgt agcaggtgct ttgatagcat atccaagata tataaatcct aaaacaaaaa
     7801 ctttatgtga aattgaagtt tgtttagata taatgctaaa tttacaaaaa gcttattttt
     7861 caaaaaaata tataaaattg gcaatagatt ttaaaacttt tatgcttaga aaaataagaa
     7921 gattttatga atttttagca aagaaatgag atttagcact aaaattaaaa aagaatttag
     7981 cggtaaaaat gttttactct tgcaagggcc tgtgggaaat ttttttcatc atcttgcaat
     8041 aaaaatgaaa aaaaaacaaa ccaaagtttt taaactcaat tttaacggtg gagatttttt
     8101 tttctatcct agtggaacga ggtgtaagtg cgatgaaaaa gatcttgaaa atttctatag
     8161 agattttttt caaagcaaaa aaatcgatgc tattttaatg tataatgact gtcgcattat
     8221 acatactaag gctattaaag tggctaaaga attaggaatt gaaatatgga tttttgaaga
     8281 aggatattta aggccttatt gtattacttt ggaaaaagat ggagtgaatg caaattcttc
     8341 tttaccgcgt gataaaaatt tttatctttc tcaaaatatt tttaccaaag aaagcataaa
     8401 agaaattcca ggtggattta aatttatggc ttttgatgct tttttgtatt ggttgtttgc
     8461 ttttattttg gctccatttt ttaacaacaa acttcatcat cgcactttat atccttttga
     8521 atttttattt tggtttagat cattgtatag aaagtatctt tataagatta cagaaaaaaa
     8581 actaaatgaa aagatttata atttagaaaa aaagtacttt ttggcgattt tacaagttta
     8641 tagcgatacg caaattaaat atcattacaa aaaaagcata gagcacttta tagaggaaac
     8701 catactttct tttgcaaacc atgcaagagc taaatcttat ctagttttta aacaccatcc
     8761 catggatagg ggctataaga attattctaa actcataaat gatttaagtc aaaaatatca
     8821 tgtagaagga agggttttat atgttcatga tacccacttg ccagttcttt taagaaaggc
     8881 tttgggttgt attactataa attcaacagt aggccttagt gctattttag aaggctgtcc
     8941 gactaaggtt tgtggcaatg ctttttatga ttttgaaggc ttatcttatc caaaaaaact
     9001 tcaatttttt tggcgtgaag ctcatgctta taaacccaat cctgttttag tatgtaattt
     9061 taaaaaatat cttttacaaa ctaatcaatt caacggcaat ttttataaaa atttcttttt
     9121 agacaaataa gactaaaaag ctttgattaa gagagctttt aaagcaaagt tgttataatt
     9181 aaaagcaaaa agaaattatt gtatggatag ggaagtattt tatatagcag gatatgatcc
     9241 taaaagttat agattttatt atgatttatt taaaaaaaac ctaaaagatt attctcatgc
     9301 ttttaacatt aaagttgatt taagtaaaat tgaaaaaaat gagcaatttc ctttttttca
     9361 aatttcttgc gaaggagtac aaactacata tcatttttta acatggaatg atattgttaa
     9421 gaaaaattgg tcagaaaatt ataaagatgc tttggcagat tgttatagtt tttttagaat
     9481 ttatactatc acagggcttt ttatcaaatt tggcaaagag tcgatttatc aacttatcac
     9541 aggttattat cctttttttt atgtgttatt ttctttacta ttttctttgg ttgtggcttt
     9601 tggaagtttt gcttttttgc aaaattatat gcatttttct ttagctatca tcataggatg
     9661 ttttttagga tttttactaa atcatttttt atttaaatta ggtaagaaat tagctgtatt
     9721 ttggatagca agaatttgtg ctttttgtgc tacttggcaa gataaaaaaa caggcactat
     9781 gcaagaaaga atcaagcttt ttgcgaatac catagtagat aagttaaaac aaaatgaaaa
     9841 taaacaagat tatgaacttg ttttagtagc acatagtgtt ggaactatag tttgtataga
     9901 agttttggag tgtattttaa gacaaaattt agatttatct ttacttcata agttaaaaat
     9961 tcttactcta ggagaatgca ttcctttagt gagttatcaa aaaaaagcgg atgaatttag
    10021 aaagaagctt gaatttgttt caaggtttga tttaaaatgg tatgattata catcgattat
    10081 tgatggagca tgttttcctc aagtggattt tttccgcacg agtggcgtaa atgctaaatt
    10141 tacaccccca tttttaagtg ctaaatttca cactttatat gaaaaacatg agtataaaaa
    10201 aataaaaaga gataaaaaca aagcgcactt tttatatctt tatagtatta gtgttaaagg
    10261 tgattatgat tttttttctt tcatcataat gcctaaattt ttagaagaaa aggtaaaaat
    10321 atgagtgaat gccccttttt tccaaaacct tataaaaata aagcttctac gcttttaact
    10381 tttttgttaa agcgtagatc ttggcttgac gggctttatg agcgtagtta taaaatgcaa
    10441 acaggctatg tgaagatgcc aaattttgat ctttatgtca taaatgacac taaagaagtt
    10501 aaaagaatga tggttgatga ggttagagaa tttcctaaaa gtgcattttt acatgagctt
    10561 ttaagtccgc ttttagggga gagtattttt actacaaatg gtgaagtttg gaaaaaacaa
    10621 agagagcttt tgcgtccaag ttttgaaatg actcgtatca ataaagtgtt taatcttatg
    10681 agtgaagctg tggcagatat gatggatcgt tttagcaagt atccaaatca tgctgttatc
    10741 gaagtagatg aagctatgac ttttattacc gctgatgtga tttttcgcac cattatgtct
    10801 tcaaaactcg atgaggaaaa aggtaaaaaa atcttaaacg catttgtgac ttttcaagag
    10861 caaagcgtgc atacagccat gcgtcgtatg tttcgttttc caaaatggct ttcttatgtg
    10921 ttaggagatc gtaagcgtgc taaagccgga gatgtgatca gacaggtttt aagtgatatc
    10981 ataaaaccaa gatatgatat ggcagataat gcagaatttg aagatatttt aggatctttg
    11041 cttttagtag tggatgctga tacaaataag cgtttttctt ttgaggaaat tttagatcaa
    11101 gtggctatgc tttttttagc aggacatgaa accacagcaa gttctttgac atggacgctt
    11161 tatttgctca gtctttatcc taaggagcaa gaaaaagctt acgaggagat tactcaggtt
    11221 ttacagggtg gagccattga aatttcgcat ctaagacagt ttaaatactt aacaaatatt
    11281 tttaaagaat ctttaagact ttatcctcct gttggttttt ttgcaagaga ggcaaaaaaa
    11341 gatacccaag ttagagataa gcttattaaa aaaggttctg gggtggtgat tgctccttgg
    11401 ctgatacaca gacatgaaga attttggaca aatccgcatg gatttaatcc ttctcgtttt
    11461 gaaggagagt acaaaaaaga tgcttatttg ccttttgggg taggggaaag aatttgtata
    11521 ggacaaggtt ttgctatgca agaagcgatt ttgattttgg ctaatatttt aaaaacttac
    11581 aaactagaac ttgaagaagg ttttgtacct gatgtagtag ggcgtttaac agtgcgttcg
    11641 gctaatggta tgaggataaa atttagcaaa agaaagctat gaaaagagtt agaactaaaa
    11701 ttcgcgccaa ttttcgtcgt cgtgtaaaac gcaccttaaa aggaagctta aaagaaaaat
    11761 tagcaggtac tattttgctt tgtgcaatag tacctttagc agttttagga tatcttttta
    11821 tcgtgattat aggaactttt tttaataccg cacgagcaag acagggtgtt agagccttag
    11881 atcattttgt aaatgcaagc ttgtttaatg gctatgcttg ggagagcgtt tcttctcatg
    11941 cgtggcgtga aagaaatcgt aaaaaatggg caaggattgt tataaaaatc acagattttt
    12001 ttcaaaaaga tcattgtaaa agagcaaata aaagagaaca acctgtggta gatttcataa
    12061 tttcaagaaa tttagacaag caaactatag gaaaataatc aaactatagc cactatggct
    12121 atagcaaaac cattatcatg agaaatgctt agggaagttt gagtgatatt aaaatctttt
    12181 gtaatttttt gagaatattt taatttaggt gcgttttttt catcttttga tatttcaata
    12241 tcaaaaaaac tgcataattc acaaattcca acacctaaag ccttgctagc ggcttcttta
    12301 gcagcccaaa gacctgctag agttgctgga tttttaatga gtatttgttc ttttgggctt
    12361 agaaatttat ccaaaaaatt tttgccatgt ctagaatgaa ttttttctat cctagaaatg
    12421 gcgatgatat cacagcctac acgcattaag aaactacaaa atccgtaaaa taaacatttt
    12481 taataaagcc atcggttaaa atttcattga tttttccaac tagctcatct tttaaacgtt
    12541 ctttgccttt ttgtgtactt acttcttcaa aagttttagc tgttaatgta cgaataataa
    12601 tatcacgaat caccgggact tttttatcaa gttcaggttt taaaagttcg ctattttgtt
    12661 ctagttctat agtgcatttt acatatcttg agccactatc gctaagtaga tttagggtaa
    12721 aaggatcaag tggatacata ggacctatat tagcaaaatc actacctcgt tgagtaggag
    12781 ctgaaacttt aggtttatcg gcttttgctt cttcttttgg agcttctttg acttcgcttt
    12841 catcacttga actgcttgaa ataagccaag caatcactcc cataatacta agaagtaaaa
    12901 caaaaagtaa aataacaata ataattacaa gtgaaccacc ttttttcttt ttcgtttctt
    12961 cgttttctaa ttcttcatcc ataaattttc cttcatttag tgaaattaat gtaaaattgt
    13021 agcaaaaatt tcttttctat ccaaatttgc tttagaaaaa cgataaattt aggtcaaaga
    13081 agagatgaat ttgaaggaaa aaaatgttag atgtgatttt tagagaatat gatataagag
    13141 ggctttatgg caaagaatta aatgaaaaaa gtgttaaggc tataggtttt tgcttgggac
    13201 aaaccatgct aaataaaggc tgtaaaaatg taagtgtggg ctatgatgca agatatagtg
    13261 caaatgaact ttttaattat ctagtgagtg gacttaacaa agcgggaata aaaatctatg
    13321 atatagggct tgtaccaact ccattgggat attttagtct ttatgagggc ttgaaatttg
    13381 atgcaaatgt tatgataaca ggctctcata acccaaaaga ttataatggt tttaaaatca
    13441 ctatcaataa agaaagtttt tttggcgtgg aattaaaaga gttttcaaaa gaagtttata
    13501 agcatttaga tgatgatatt gaagaaaatt tagaagtaga aaaatacgat attttaagcc
    13561 tttatgtgaa atttatgtgc gagcaattta gttttttaaa ggattttaat tataaatttg
    13621 gtgttgattg cacaaatggt gcggctggag tggtgataaa gcctttaatc aaggctttaa
    13681 atttaaaagc tcatgtaatg tttgcaaagc ctgatggaca gtttccaaac catgctccag
    13741 atcctacaga agaagaaaac ttaagtgcga ttagagagtt tttaaatcaa aatcaagatt
    13801 attctttagc ttttgctttt gatggggatg ctgatagaat ggttgctttg agtaaaactt
    13861 atgtattttg tggagatgag ctttgttatt tgtttgctaa aaatattcct aatccacgca
    13921 ttttaggtga ggtaaaatgt tctaaaaatc tttttgatga agtggctaaa tttggaacta
    13981 tttttatggg aaaaacagga cattctaata tcaaaaaaat gatgaaagaa aaagatattg
    14041 atttagctgc tgaagtgagt ggacatattt tctttaaaca tagatatttt ggttatgatg
    14101 atggaattta cgcattttta agagccttag aacttgttta taaaggtttt gatttagaaa
    14161 gtatgattaa agctttacca aaactttata ctacacctga aattaaaatt cctgtaaatg
    14221 aagaagaaaa atttaaactt gtggaagaat ttcaaaaaga gattgaaaaa ggagctttaa
    14281 aaggtgttaa aagtctttgt gaaattgatg gagctaggat agattttggc gatggatggg
    14341 ctttgcttcg tgcatctaac accagccctt atcttatcac acgctttgaa gcaacttctt
    14401 tagaaagagc aaaagagctt gaaagtacgg tatttagttt gtttaatgag ataaaagcta
    14461 ggcttaagaa ttgatgagat aatatttcgc gatttaaatt tattttaaaa aggaattaaa
    14521 aatgaaaaaa atacttgttc tacttttgtt atgtgcgttt gcttttggcg caagtgaatg
    14581 tgatagaaaa attgatcgta tcaataaaga aatcagtttt tctaaagcgc ataatgatac
    14641 agctagaact ttaagcttag agcttgcttt aaaacaagta caaaatgatt gtgctaaaga
    14701 tcctatgttt tatgataaaa agttagaagc taaaaaactt aaagaacaag aagtagaaaa
    14761 aatcgaaaaa gaacttgatg ctttaaaaga acaaaaagat tatatgagta aggctgagta
    14821 taaagctaaa aaagaagctt taaaagaaca aaaagagaaa atcaaaaaag aaattaaaga
    14881 atatattgat aatctctaaa aattaaaagg ctaattaaat ttagcctttt taaaccctac
    14941 cttttttaag attttctagt aattcttcta tattataaat tcctctgtgt tctggtgtta
    15001 aaagatggat taaaatatca ccaagatcaa tcacactcca ttcttcgcta ctatctatgt
    15061 ttaaaaattc ctcacctttg gctttaagtt gtgttttaag ctcatcgatc aaggatagag
    15121 cgtgtctttc tcctaaagta gctgcgataa tgacatattt tacaaagtat tcttgctcgc
    15181 tcatgtcaat ggttttgata tcttcagctt ttttttcatc taaaatttta acgattaaat
    15241 ctattctttc ttgcattatt gtcctttaat ttttgaaatt gtatcaattt ttttgtaatt
    15301 tttcataata tttttttact tcatctttaa tttcttcgca aacttcattt gtatttaaag
    15361 tgttgcgtat gaaagaagaa gcgatttttt tatcggtttt taaatcttta aaattcttag
    15421 gaatttctat atcattgcga ttagcaataa caaattctac taaagaatta agtttttcaa
    15481 aatcatgcca aagatgaagt ttttctaaat gatctgcgcc gattaaaaga taaaatttac
    15541 taggattata aagcttataa agatacttaa cactttctat gctaggaaca gggcgttttt
    15601 gcttggtttc aaaatcacaa atttcaactt ttggaaaatg tccccaaagt tttttaaccc
    15661 ataagaatct ttgcttttca tcagcactaa agttttgttt aaaagggttg atataagtag
    15721 gcataataat aagcttatca atatctaatt tttccaaagc ctctaaaata acgctattgt
    15781 gtccattatg tggtggatca aaactgccac caaaaagtgc tatcttcatt aaaattttaa
    15841 cctttttttt gtagaatatt agcattatat tttgcaaaag gaaattaaat ggctgtaaaa
    15901 gttgctataa atggttttgg acgcataggc agatgtgttg caagaatcat cttagaaaga
    15961 aatgatattg agcttgtggc gataaatgat actacggata ttgaacttac aaaatacctt
    16021 tttaaatacg atacagtaca tggtgaattt aaaggcagtg ttgatagtga aggcgatgat
    16081 ttagtggtaa atggtaaaaa aatcaaagta tttaaaagtc gcaatgtaaa agatcttgac
    16141 tttgcaaaac acggcgcaca aattgtttta gagtgcacag gagcgcattt aactatggca
    16201 aaatgtcaag aatttataga tatgggagta caaaaagtga tcatgagtgc tcctgcaaaa
    16261 gatgatactc ctacttatgt tttaggagta aattcagaac tttacaaggg tgaaagcatt
    16321 atttctaatg caagttgtac aacaaattgt ttaggtcctg tttgtcgtgt tttacaagat
    16381 aattttggca tagaaaaagg acttatgaca acaatacatg cttatacaaa tggacaaagt
    16441 attattgatg ctaaagctaa agataaacgc cgttctcgtg ctgcagcgca aaatatcatt
    16501 ccaacttcta caggcgcagc aaaagctatg aaacttgtta tgcctgaact taatggcaag
    16561 cttcatggac aaagtatgcg tgtgccagtg attgatgtat caagcgtgga tttaactgca
    16621 caactaagcc gtaaagttag caaagatgaa atcaatgaag ctttcagaaa agctgcagct
    16681 acaaatttaa aaggcatttt aatggtagat gatgatgaaa gagtttcaag cgattttatc
    16741 acttgttctt atggagctat tgtagcaagt gatttaactc aagtgattgc ggatgatttt
    16801 atcaaggtaa ttgcttggta tgataatgaa tggggctatt caagtcgtct agtagatatg
    16861 gcagtatata ttgcaaataa ggcttaatca tgagtgatat tatttctata aaagacattg
    16921 atttagctaa gaaaaaagtt tttataagat gtgattttaa tgttcctcaa gatgattttt
    16981 taaatatcac tgatgataga cgcataagat cagctattcc tacgataaga tattgtttgg
    17041 ataatggttg tagtgtgatt ttagcctctc atttagggcg tccaaaagaa attagctcta
    17101 aatattcttt agaacctgtg gctaagcgtc ttgctagact tttagataaa gaaattgtta
    17161 tggcaaaaga tgttatcggc gaagatgcaa aaaccaaagc tatgaattta aaagcgggtg
    17221 aaattttact tcttgaaaat ttgcgttttg aaaaaggcga aactaaaaat gatgaaaatt
    17281 tagccaaaga acttgcttct atggttcaag tttatatcaa tgatgctttt ggagtatgcc
    17341 atagagcaca ttctagtgta gaggcgatta ctaaattttt tgatgaaaaa cacaaaggcg
    17401 caggattttt actccaaaaa gaaattgatt ttgcaagcaa tcttatcaaa catccagcac
    17461 gtccttttgt cgctgttgtt ggaggttcaa aggtaagtgg aaaacttcaa gcattgacaa
    17521 atttattacc aaaggtagat aaattaatca taggcggagg tatggcattt acttttttaa
    17581 aagctttagg ttatgatata ggaaattcac ttttagaaga agaactttta gaagaagcta
    17641 ataaaattct taccaagggt aaaaatttag gagtgaaaat ttatcttcca gtagatgttg
    17701 tagccgctcc tgcgtgctca caagatgcgc cgatgaaatt tgttccagcg caagaaattc
    17761 caaatggttg gatgggttta gatataggac ctgcgagtgt gagacttttt aaggaggtga
    17821 tttctgatgc gcaaacgatt tggtggaatg gacctatggg tgtttttgaa attgataaat
    17881 tttcaaaagg tagcattaaa atgagtcatt atatcagcga aggacatgca acttctgttg
    17941 ttggaggcgg tgatacggct gatgtggttg cgcgtgcagg tgatgcagat gaaatgactt
    18001 ttatttctac tggaggtggt gcttctcttg aacttataga aggcaaagaa cttccaggtg
    18061 taaaagcttt aagatctaag gaaaatgaat gatctttgct gcaaatttaa aatgcaatca
    18121 cacaagagca agctttaaaa tttatgctaa aattttaaat aaaactatgg gggtaaaatg
    18181 cgatgatatt atcgtttttc cacctagtat agcattttta gaaaatgaaa ataacttcat
    18241 acaaggagcg caaaattttt atccttgtgt taatggtgct tttacaggcg agcttggaaa
    18301 agaacatttg gacgaatttg ggattaaatg tgtcttaatc gggcattctg aaagaagagc
    18361 tttaggagat gaagaattta ttaaggctaa atttgatttt gctaaagagc atggttataa
    18421 aattgttttt tgtataggtg aaaatttaga tacaaaaaat tcaggcaaga ctttagagtt
    18481 tttaaaaaaa caacttgaaa ttattgattt aaattatgaa aaactcatca tcgcttatga
    18541 gcctatttat tctataggaa cgggagtgag cgcacaaagt acagatatcg ctaaagtgct
    18601 tgaattttta gcgagtttaa ccaaagtacc tttgctttat ggtggaagtg tgaatgaaaa
    18661 taatatcaaa gaaattttaa gtgtaaatca ttgtggtgga gttttgatag gctctgcagc
    18721 tttaaaagta gaaaatttta taaaattaat caaaggataa aagatgatta tgaagggtaa
    18781 aaaaggcctt attgtagggg ttgcaaataa taaatctatt gcttatggca tagcaaaagc
    18841 atgttttgat caaggagccg agcttgcttt tactttttta aatgatgctt taaaaaaacg
    18901 cgtagaacct atagcacaag agtttaattc taattttgtt tatgagcttg atgtaaataa
    18961 taacgagcat ttagattcta tcgctgaaaa aatcaaaaaa gatttaggcg agattgattt
    19021 tgtagtgcat gcggttgctt ttgctccaaa agaagcttta gaaaattctt ttttagaaac
    19081 ttcaaaagaa gcttttgata tagctatgca aacttctgtg tattctttac tttctttaac
    19141 gcgtgcagtt ttacctattt taaaagataa gggttcgatt ttgactttaa gttatcttgg
    19201 aggggttaaa tatgtgcctc attataatgt tatgggtgta gcaaaagctg cacttgaaag
    19261 ttctgtgcgt tatttggcaa gagatttagg ggtaaaagga atccgtgtta atgctatttc
    19321 agcaggtcct attaaaactt tggcagcaag tggaataggg gattttagaa tgattttaaa
    19381 atacaatgaa atcaattctc ctttaaaacg caatgttagt atagaagatg taggaaattc
    19441 ggctatgtat ttacttagcg atttggcaaa tggtgttaca ggtgaaatac attatgtcga
    19501 tgcaggatat aacatcatgg gtatgggtga tgttgaaaaa aatgaagaag ggcaaactgt
    19561 tctttgttgg gataatcaaa aaggataaaa aatggcaaag cttagcaatg aagaattaaa
    19621 aaatatactt gaagatcgca ttaaaaaact tgaaaattct actttaaaag aggataaggt
    19681 tattaatgaa gaaagtgtaa aaattcttgc taggcattta tctttaggca atgaaattcc
    19741 agctcttgct caaagatttt ttcaaatcgc acctaagaca aagttagtat ggcttcatct
    19801 ttgtgaatgt acagggtgta gtgagagttt gttgcgttct gagttgccaa gttttgatga
    19861 gcttattttt gatttttttt ctttagaata tcatgaaact ttaatggcag caaatggcac
    19921 taaagctgaa gagcttttag agcatgtttt agaagaagat tttattttag cggttgaagg
    19981 tggtgttgca gccattgata ccttttttct tactatagga gcacaaggag agagtggcta
    20041 tgaaatttta gaaaaactag ccgctaaagc caaggctatc tttgcagtgg gtacttgttc
    20101 aagttatggt ggtattcagg ctgcttatcc aaatcctagt aaaacttgtg gtattagtga
    20161 agttttaagt cagaaagtag taaatatccc aggttgtcct ccaagtgata taaatatcat
    20221 tgcgacttta agtttttttg ctttatttgg agttttacct gaacttgatg agcaaaatcg
    20281 tcctgtttgg gcttatggta aatgcctgca tgatatgtgt gaaagaaagg caaaatttga
    20341 aagtgggatt tttgctgaac attttgacga tgaggctgca aagaatggag cttgtttatt
    20401 taagataggt tgtaaaggac cttatactta caataactgt cctaaagtga aattcaatgc
    20461 taaaacttct tggccagtgg ccgcaggaca tggttgtata gcctgtagtg agaaaaattt
    20521 ttgggatgag tttgggaatt atgaaaagcc tatggcaaat attttttctt acgctaaact
    20581 ttgtaatgaa gagttaaaac aagaattttt tctagaagag caaattaaaa ttttagaaca
    20641 aatagatttt gaatttgaaa gcaatataaa acttatttta caaaatatag ctaaaaataa
    20701 attaggtgct ttgcttgtag aaaattataa aaaatccttt gaaaaaaact atacttttat
    20761 agagcaaaat tttgatgaaa atcctatgcc ttcaaaagat ttttggaaat atcttgaaat
    20821 aagctttatt ttagttaaag gagagttttt aaaagataag aatgattttt taattgcggc
    20881 aaaaaattat gcttttaaac atgcaagtcc ttatgatttt aagttaaata tgaacgctga
    20941 aaaaccaaag cttgatgtga gtaaatcttt tcgtatgact ttgatctatc tttgcggtgg
    21001 gcttgatttt gaaggtattg cttatagtat tttaaaaact tttggggata atatcactaa
    21061 aatttcatca ttaaaagcaa gttaatttaa taaaatttta gcaatatgaa gccctataaa
    21121 agctactata taagcacttg tgcaggtaaa aagaaagaga aagagagtat attttagctt
    21181 tccactttct tttgaaaaaa ctatagttgc tgcaaagcag ggattataaa tcattacaaa
    21241 taaaataaaa gccactgcac ttggtatagg tatgttttta gcgataattc cttttaaatc
    21301 attatttgtt tcatctacat cttttcctag tgaataaagc acgcccatag ttgagatcat
    21361 cacttcttta gcagccaaac cactgattaa agatacgctt aatttccaat ctaactcaag
    21421 gggttgaaaa ataggttcta tgcctttgcc aaattgtcct aaataacttt gttctatagc
    21481 tctttcttga gcattaaaat catttaaatt ttcttcactt tttggaaaat tgctagcaaa
    21541 ccatatgagc aaagaggcca aaagtatgaa agttcctgct tttttaagat acattttggc
    21601 tttattataa accataaacc aaactaaatg ccaatttggc atacgatatt ttggcatttc
    21661 cataacaaaa ggttcatcaa gtccacgaaa tgctgtcatt cttaaaaatt ttgcagcaca
    21721 aagtcctaaa atcgcaccta aaatataaat tccaaaaaga taatttcctg ctttttcact
    21781 tggaaaaaaa gcaccgataa aaagcacata tacaggaagt cttgccccac aactcataaa
    21841 attgatcaca aaaagagtta aaagcctatc tcttttgttc ttaagagtgc gtgtagccat
    21901 aaaagcaggt accgaacaac caaaaccagt gattagcgga ataaaacttt taccatgcaa
    21961 accaaattta tgtaaaatcc catcaagtaa aaaagctact cttgacatat agcctgtggt
    22021 ttctaaaaga gctatgccta aaaataaaat cattatatta ggcaaaaaaa gtatcacagc
    22081 accaacacct gcgataatcc catcagccaa agctgaagcg ataaaggtat tagaaatatt
    22141 gtttttaaca aattcaccta aggtattaaa gcccgattct atataatcca taggaatttg
    22201 ccctaagcta aaggtgagtt gaaataaaag ccacattaaa aataaaaata taggtaagcc
    22261 aaagaattta tggataagta aggcatcgat ttttttggtt aaatttcttt cttctttttt
    22321 gtgtgtaata attttttttg aaagttcatt aataaaatat aataaatctt ctttttccgg
    22381 acttttttcg caaagcggag tgtaaaattg agatcttgga ataaatttac tttcaaataa
    22441 aataataatt ttttgcagca aaagttctaa attttctttt gtttttgctg aaatttcaac
    22501 aacttgactt tgaaattctt ggcttaaaat agaagtgtca agctctatac cttctttttt
    22561 ggcttcatcg cacatattta aagctaaaag cattttttta ttaaggctta aaagttctgc
    22621 actaaggata agattgcgtt ctaaattggt agcatctaaa acattaacaa taacatcata
    22681 gtcattttga tttaaaaaat gacgtgtgat tttttcttct tcgctatatc catctaaaga
    22741 ataagttcct ggcaaatcaa tgacttcaaa ttcatagttt ttataaaaag tttttgcgct
    22801 tgctttttct atagtaactc cgctaaaatt tcctactttc atattggctt tgcaaagtgc
    22861 attaataaga agacttttgc ctacattagg ctgacctaca agagctattt tgattttttt
    22921 catataagat tcacttctat ggttttagct tcatcagatc ttaggataac acaacttgta
    22981 tcaagttcta ccattatggt ggcatttttt aaagaggagt gaattttttt caagttttta
    23041 tttttaataa atccaaagct taaaagtcta tttttgagtt ctttgtgagc gtttaaattg
    23101 acaataatag ccttttgtcc atcttttaac tcgtttaaag tcattgtaat tcctaaatta
    23161 ataataaata ttataataaa aaagtgtaat gaaattatcc ttcttaaaaa gaaggataaa
    23221 tatttaaaaa gaaaagtggt ttaaattttc tagattgatg atttgatcta gaattttgtt
    23281 agctttagta ttatcaaggt aaatttgtgc attggctaaa aatttagctt ttaattcttc
    23341 aaaacttagt ggattatcaa aattaccttt attgataaaa acatcttttt ggattatgcg
    23401 tccatcttgc aaactggctt ctaaatgccc tggaaaatat tttggaaagc cttgagattt
    23461 cctttttttg taactgattt ttttagcaaa ttctagtact tcttcacgct ttaaattttc
    23521 ataagattca agagtgattt taccatcaaa gaatcctaga gccattaaaa aaggcatgga
    23581 aaatttggcc tcataagcac tgtttggagt gtattttgct tctaaaggat cgcaaataaa
    23641 agaaatagga acttcatcta caaaacaacg aatgcttttg atttcatctg cttttaagcc
    23701 atcatttttt aaagctatgg cacaatcaat aagaccatga gcaaaatggc agcttggata
    23761 aggctttata gaaacttgca tactttgcta aatttcaccc aagcctttat caagttctgt
    23821 tttatcgcat tcttgttcta taccaaaaca tttaaagata ttatccctac ctttaaaaat
    23881 gcttagaggt tcactcatgt tatttttagc aaagttagcg attaaaattc catttttaat
    23941 ggcatttgct atatgtaaga cttttgaatt agagccattg gataagaact cattaatccc
    24001 acttgcaaaa cttccagcaa gtcctaaagc attgatgatt tgttctttgt taagatccag
    24061 caagattgca cttgcactca cacttccaaa aattcctgca atagcagtgg tatgaaaacc
    24121 acgcttatga aaagtgcctt tgcttgcaat gcctactcta gctgcaattt cccagcctat
    24181 tataaaagct ttgatgattt ttttcgcatc tttgctaaca tgaaaaccat aacttaaaca
    24241 aagaggagtt aaaatcgcac ttgcgtgcaa aatagcttct gtatgcgtat catcaaaatc
    24301 aagtgcatga gaagcaatgc catttagcat ggctgcataa atgggatcta attttttatc
    24361 atgtacccat acaggggtat ttttttctgt gcttaaattt tcaaaagctt taaaggcatt
    24421 taaaacgcat tcttccttac tcgctgctat agccgttcca aggctatcaa gcataagctc
    24481 tttagctctt tgaacaactg tattagggat attttcatac tgaagattga aaataaaatc
    24541 cgccaaaatt tcgctataga acatgatttt tcctatttta agatagcgct atttttgatt
    24601 tttgccaaaa attcatctac aagttttggt gcatatccta cataacttgt tgcatcaagt
    24661 aaagcatcga tatctttttc ttttaagact tgagatactc ttgtatctgc aagcaatact
    24721 tctttgaaag ttttttgttg ttcgatacct agcatagcgt tttcataaac gatttcatga
    24781 gcgtgttgtt tgccgtaatg atcgcttagt gcaaacataa cgcgttctgc cagtacaaag
    24841 cctttaagag tgtcaagatt tttaagcatt ttatcttttt taacttctag gtcactaaga
    24901 gcaaatttca tatttgctaa aaccacagaa agcattaaaa acatttcagg taaaagtttc
    24961 cattccattt tccaaacttg cccatctctt tcatgctcgt gtctttcaat atcgcttaaa
    25021 atggctaaat ttgccttaaa ggcattgctt actgtaactg cattttcgct tactgcagga
    25081 tttcttttgt gtggcatagt gctagatcct acttgtcctt tgccaaaagg ttctgctact
    25141 tcatcgattt cattgtgtga gagtatgagt aattgatgag cgattttgtt aaaagttgca
    25201 ttgatattgc ctagtacaaa accaagctct ataaagcgat cacgtgtgct ctgccaagag
    25261 atattaggca cttcaagtcc taaattctct aaagttagct tttctacttc gttgcattca
    25321 tcgcttaaac tcgccttggt tccaacagct cctactatgc tgcctacata aagtcttttt
    25381 tcaagttcaa gtattctttc aaaatgacga tcaagctcgc taagccagat ggctacctta
    25441 tgcccaaagg tgatcggtaa agcttgtaaa gcaagagttc ttcccatcat agcagtgttt
    25501 ttatgggttt tagctagttt cgctaaggct tttgcgatag cttttaattc gctttttaca
    25561 agagtcattg cttctttaaa ttgtaaaacc agtcctgtat cgatgatatc ttgagtggtt
    25621 actctaaaat gtacatattc gcctaaatta ttatcgcaag ctttttctaa tcctcttaca
    25681 gtaggaacta aagggtgttt ggtcttttta aattcagcaa agataaagtc catatccata
    25741 aatttataat gagctttttt tgcgatctca tcagctgctt ttttagggat aattttaagt
    25801 tttgcttgtg cttttgctaa agctgcttca acatcgagcc atttttgtat gcggttttgt
    25861 tcacaaaaaa tagcacgcat ttcctgcgtg ctccatgagt ctgctagtaa tctatgatca
    25921 aatacgctaa ttcctgtcat cttatctcct tattttttaa tactatcaaa agcttgtgtt
    25981 aaatcagcaa ttaaatcttt agtatcttca agacctatat gaaatcttac aaatagtcct
    26041 cttgcactta ggtctgttgc agttctaggc ggagtagtta cggtggctaa gctttcatat
    26101 ccaccccagc tagcaccaat tgaaaagtat tctagtttat ctacaaattt aatagcatca
    26161 tctttgttat aaccttctgc aaattctatg gtaatcatac catttgcacc tttatgatca
    26221 cgcatgaaaa tttcatgatt tgggtgggat ttgagttttg gatagaaaat tgttttaatt
    26281 tcttttctgc tttgtaaaaa ctctacaatt tcatcagcac ttttttcatg agctttcatt
    26341 cttacatcta gtgttctcat accacgaagt actaagtaag catcatcagg acttgttgta
    26401 aagcctaaag cttctggaag tttgtcaaaa tttttccatt ctttttcgtt gattactact
    26461 atacccatgg ttacatcaga gtgtccacta agatattttg tagcggcgat aactgaaatg
    26521 tctactccaa gttctaaagg atttagaaaa tatccactag aataagtatt gtcaatagct
    26581 acagggatat tatatgcatg agcaattttg caaagttttg gtaaatctat gatttcataa
    26641 agtatagaac ctggactttc gcataggata agcttggtat taggtttgat tttttcttct
    26701 atatcacttg catcagcttt taaaaaatca atttcaacgc ctattttgtc taaaaataat
    26761 tcgcaaatcg ttcttacagg cccataaatt gcatcagtga ttaaaaaatg tgcatctttg
    26821 cttgcatagt ttaaaagtac catggctaat gctgcaagtc ctgttggaaa aagttgtgct
    26881 ctataaccac cctctagagt gcaaataagt ttttcaagtt caaaattggt tgttgttcct
    26941 ctagctccat agcttaaaac acgatctgtt tttcttaatt ctctgtattt ttccaagttg
    27001 cgtgatcttt aaaaagtatg gttgatgcac gcataagtgt aggattgact gatcttactt
    27061 cagcaccttg atcgcctctg ccacaatgaa taagtttagt ttttgagttc attttttctc
    27121 ctttttaaag ataaatataa gtcataataa catttacaat agccgctaca agcataggaa
    27181 tagctgttct tttaactacg gcaaaaggac ttacttttgc aatagctgag atagctaaga
    27241 tcgctggtgc aataggacta acacatcttc caaagcccgt catgatttga attggtgcta
    27301 tcatggtgat agtttcaact ccaaagtgtt ttgctatatt tgggataagt ggagcaaagc
    27361 taaaaaatgc cgcatttcct gaacccatta agaaagcaca aaccgcaagc aagattgaaa
    27421 cggcgataat aatagccaaa actccaaatc ctgcattttt gcaaaattct attaaagtat
    27481 ctacaaaacc tacagataaa agaccacttg caaatacttg accgcaaacg atgagtgaaa
    27541 ctgtgataac aaataaatgt cccattcctt taaagaaaat cataatagaa ttaagagttt
    27601 ctacaacgct tttatagcgt atcatttcaa aaataatagc cacaaaagtt gaaatcacca
    27661 ttgcttactg gaacattcat tttaattgca gtgctagcag ctgctttaac ttcttgggca
    27721 ctacttattc ccattaaaac caagatgcta tcaagcacgg aactaaatcc taggattaaa
    27781 accaaaggaa ttataggtaa aatcgcataa attctaggag gctttttaag ttctttttct
    27841 ttaccttcat tttcatttag ttctttttca atttcttgtg cattgaaggc aaaattatct
    27901 tttttgtcaa aaaatttatt gcaaagatat atcgcaatac ctacagctat aatgataggc
    27961 aaggttgtag ggagttgata atgaacaaaa taaattgcag gatcaacttc agctactttt
    28021 gatgccatga tcacatttcc acttccaggt ccatgatcga tatattgaca aatcgcaatc
    28081 acacttaagg cagaaagttt tgaaacacca gaagtacaag tataggatac atagtaacca
    28141 taagtaaaag tgccaagcct gcgtgagaag ggatgaaaag aactaaaagt tgcacgataa
    28201 aataagcaac tatgagtaaa acataaggag attttacggc ttttaaaggt ttttcaaaaa
    28261 ctttaaaaag tgcataagaa gcccctacat gatccatata agcagaaaaa cctgctatag
    28321 tcataagtgt aagtccaagc cctactaatg tacttgacat ggtttgattg aaaacttgaa
    28381 aaatatcaaa aaaacctaaa tttaaagaac ctttagcgac aatatgtgga gaaagtccaa
    28441 aaagagcagc taaggaaagt aaaagtaaac cacttaaaag caatgccatg tgagcattga
    28501 tttttttata aagcataaaa acaagcaaaa aaacactaaa taaagaaaaa acaataccta
    28561 gcatgtttta tcctttttga gcgatgatct ctatctctac tttagctttt tttggtagat
    28621 cttttaccgc aaaagcactt cttgctggat aaggagcttt aaaaaattca gcataaattt
    28681 cattgaatgc tacaaaatca ttaatatcag ctaaaaagca agtggtttta atcactttat
    28741 cataactgat accattttct tctaagatag caccgatatt ttttaaagat tgtttggttt
    28801 gttctttgat atcagagctt tctatttctc ctgaagcagg gttgatagga agttgtcctg
    28861 atataaataa aagtccattt acttctctgt aagctgagta tggaccaatg gcctttggat
    28921 agtttgacat gaattctcct ttgttaaata tagattaagc agaatgcatt ttatcactac
    28981 aataataatt tgtcaatagt ttattatc
//
LOCUS       DAPIWJ010000007        28947 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.007, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000007 DAPIWJ010000000
VERSION     DAPIWJ010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 28947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28947
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.007"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            21..1295
                     /gene="cmeD"
                     /locus_tag="RJ259_000238"
     CDS             21..1295
                     /gene="cmeD"
                     /locus_tag="RJ259_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HDV7365981.1"
                     /translation="MFEKYLKSAIFLALYPLAMLASNLHEFIALSQNNESYLIKQMQS
                     EQANLDKEQAFRNYLPSLSLNSAYVANNKDRFIIDPQESLFAKVSLNFLLFDGGAREA
                     NLRALESREKLSLLDKEQNKNYLALNAITLYFNTLSLEKILLANQQKVSFLKSTFERL
                     QKFYDAGLSPKDELESIKAKYHLSLLELSQNELKLANIQKEIKILSDTDFKVQGNAFL
                     ENPQQEKSQNYEVMIAKEQINLAKESVNLAKAEYFPKFYIQDNFNFYKNNYNPKVPAP
                     FANLADQFLEKYSQGNQFILGMEWKIFDFNARAKEVEKERLNVQIANANARFSERKNK
                     EELNYLDKSLKVLQEQILALNLSLNAANLAFESVDKKYQAGLVSYVEYLQALEVKFKA
                     QSDLELAKNEFEITKANYYFNAGIDLNSKVKE"
     gene            1292..2032
                     /gene="cmeE"
                     /locus_tag="RJ259_000239"
     CDS             1292..2032
                     /gene="cmeE"
                     /locus_tag="RJ259_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeE"
                     /protein_id="HDV7365982.1"
                     /translation="MKKILFLLLVFNCAFGEEIYASFNVEASKQSKLALESIGLVQKI
                     PVEIGQKVSKGELLLALDQESEKIALQNAQNSYQLALVEYENTKSRMQKIKAVENVID
                     KQSYEDMKAKFDAANLNLNKAKINIAYYKNIMAKKELRAPYDAIIANKFIQVGEGVGG
                     VAQPLIEIFSYPQSKLILSFDEKYKDKVRLGDDFFYKIDQNGTELKGKINLIYPSIEV
                     KTRKIYAEVQTTNLTPGLFGEGRIITKD"
     gene            2035..5052
                     /gene="cmeF"
                     /locus_tag="RJ259_000240"
     CDS             2035..5052
                     /gene="cmeF"
                     /locus_tag="RJ259_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HDV7365983.1"
                     /translation="MFKLAINRPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIK
                     ITSKVNGDLNFVESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAA
                     NDVRDKIGTLSLPSKPEIEKISSDSGSAISLFLYSKDKLQLMREINDKIKPFLQRVEG
                     VGKIEAKGFLEPQIRIELKPNQLRKYNLNALDVANIIKSQNFKQALGELNNNQDNYII
                     KGYFEATNLEELSNLRIKTGVFLSDIANISSLYEDEKQSALYEGKEGVLLELGKITNY
                     NTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIV
                     FLFLRNLSTTLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI
                     ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGIS
                     VASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENLLYKILQNKV
                     KFILATLVFIGLSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEKSLNLLEK
                     IKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQSAIVSLYRQKFQDESLK
                     IKILELPKIEGAGIDDPVQFLILGDDLNTLKEAASQAKEILGTNARIVDISDNANATK
                     DEVALHINKEKAKLLDVNPQYIAGVLGYSFSQLSVGSMDRGNSKDDIILSFAPEFKKD
                     IEALKRISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQ
                     KLLLDNMDKILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFI
                     LPLIIMITMPLAFGGASIGLFITGHNFSLFVLIAIILLFGMVGKNAILLVDVANKKCH
                     EGLDPDKALLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLIS
                     STLLTLLVVPALFKFCFKLDSKLRKIYEREKLN"
     gene            complement(5076..5882)
                     /locus_tag="RJ259_000241"
     CDS             complement(5076..5882)
                     /locus_tag="RJ259_000241"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDV7365984.1"
                     /translation="MQIVQTLETINVNTDDISVFQYFKDLITKNFTKVIGRKNKIFSF
                     FEENEIPQRRYFLKVLDQKYRKSTNEGIENLQDAHFKTFRLIFEQNNMLKPMLFIKID
                     FVAGRILMKLSSNEKLFITYIRNYFQDHNIEYNEMTNILILEYKNENTLELFEAFADE
                     SEHLKYCVNFEVDREEYKKFRQNIHNKENMKWKFNALAKLFSNYFNTLECTPQNDLSE
                     IRQKYLILVKLYHPDFHQGKSAIEKAYAREQFEKIQIAYDNLKALYKNNT"
     gene            complement(5883..6602)
                     /locus_tag="RJ259_000242"
     CDS             complement(5883..6602)
                     /locus_tag="RJ259_000242"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HDV7365985.1"
                     /translation="MLEIGFCTLEDQCPYLKDKRSRIEYKYIENCPKEINNGLIKRGW
                     RRFGRYFSRPICKDCDECLSLRILVNEYNFSKSERRVINKNINTKVMLRTPNLSNEHL
                     FLYDKYHRFMEEKKNWKRYDLSFKQYYNLYVDGFMNFGYELAFYIEDKLVCVDLIDIL
                     EDGISSIYCFYDPDFSYFSLGKFSLLNEIQIAKKMNLDYIYLGYFVKKCQSLSYKADY
                     TPNEILKGTKELFENEVLWEK"
     gene            complement(6602..6853)
                     /locus_tag="RJ259_000243"
     CDS             complement(6602..6853)
                     /locus_tag="RJ259_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7365986.1"
                     /translation="MDFLDSLKSIKKEMQANTNTPKLAKKSSKSGASVKNLEKLAKDI
                     REKNQETNIDKEMQEIFLKQEKLQDEFSEFIKNADIKKI"
     gene            complement(6857..8302)
                     /locus_tag="RJ259_000244"
     CDS             complement(6857..8302)
                     /locus_tag="RJ259_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase subunit A"
                     /protein_id="HDV7365987.1"
                     /translation="MNQIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHV
                     KIADEAYRIGTDAIRGYLDVVRIVEIAKACGADAIHPGYGFLSENYEFAKACEDAGII
                     FIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILK
                     ASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGD
                     NYGNIIHLCERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTI
                     EFLLDDYNRFYFMEMNTRIQVEHPITEEITGIDLIVRQIRIAAGEILDLEQSDIKPRG
                     FAIEARITAENVWKNFIPSPGKIGEYYPALGPSVRVDSHIYKDYTVPPYYDSMLAKLI
                     IKATSYDLAVNKLERALKEFVIDDIRTTIPFLIAITKTREFRRGYLDTSFIETHMQEL
                     LEKTEDRHQENKEEVIAAIAATLKKIRESRE"
     gene            8442..9605
                     /gene="ftsW"
                     /locus_tag="RJ259_000245"
     CDS             8442..9605
                     /gene="ftsW"
                     /locus_tag="RJ259_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HDV7365988.1"
                     /translation="MVADKRLFYLNCILITIGIVFSYSLTAFTVLFLDYSEFHFFIRQ
                     LFFGISGILIMFFISRLDPDKALSKKIILAILIISFIFIIILPFLPSALATASGGAKR
                     WIRLGPLSISPVEFFKIGLIYFLAWSYTRRIDDSKKAIRHEALILLPYCILASIVIGY
                     IYITQNDLGQSVISFFLILALAFFAGASKRLFAFGTLIIMMIGIMVIFSNQRRIQRIA
                     SWWGNIQDAFLPMLPDWLANALRVSSNSEPYQISHSLNAIAHGGMFGEGLGLGTFKLG
                     FLSEVHTDFVLSGITEEIGLLGLGVICYIYLWMILRIFRIAGRCEAKQDFIFCSGIAL
                     LLLFSFFMNAFGIISLTPLKGVAVPLLSYGGSSMWAICIGIGYVLMISKKVKL"
     gene            9602..10630
                     /gene="murG"
                     /locus_tag="RJ259_000246"
     CDS             9602..10630
                     /gene="murG"
                     /locus_tag="RJ259_000246"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HDV7365989.1"
                     /translation="MTIALTGGGTGGHLAIVRCLLESAIKKNIECIYIGSQNGQDKAW
                     FENEVRFKEKIFLSSKGVVNQSKFGKISSLLHTLKLSKDCREIFKKYHIQAVFSVGGY
                     SAAPASFAALSSHLPLFIHEQNSKSGSLNMLLKPFATKFFSAFEKEFSPYPVANKFFD
                     NARTRTELKNIIFLGGSQGASFINELALNLAPKLQEQNIKIIHQCGKNDFEKCKKHYQ
                     SLNIQADVFDFSSNLEEKMKNADLAISRAGASTLFELCANTLPAIFIPYPYAAKNHQY
                     FNAKFLQDQALCQIFTQDSINLDDFLKAMLKLNLEDISTRLQNIAQKNGGDILLEKAL
                     SDNLAFIR"
     gene            complement(10601..11763)
                     /locus_tag="RJ259_000247"
                     /pseudo
     CDS             complement(10601..11763)
                     /locus_tag="RJ259_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344435.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
     gene            complement(11771..12622)
                     /locus_tag="RJ259_000248"
     CDS             complement(11771..12622)
                     /locus_tag="RJ259_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7365990.1"
                     /translation="MKKYVLSLALLGSLLGASELKYQEFDGFKSPESIFVDKNYVYVS
                     NVGEKLEPLAKDNDGFISKLDKNGKVLEYKFLTHLNAPKGMMEIGKTLYVVDIDVLRG
                     FDLKTKKEIFNLPIKGAIFLNDIEKLDDNTLLVSDTGTGLILKVDLKTKQYDELLKLD
                     LVKFGGPNGLYLDRKKHKLFIAGYHPDGVSGGVVMAYDLNTKELSIIKNEKESYDGIV
                     PYKDGLLVSSWGNNLNGYIYNLDNVKSVKLEFPLMKGPADIFIEGNILWIPKMAEGKI
                     FKVELNK"
     gene            complement(12685..13575)
                     /locus_tag="RJ259_000249"
     CDS             complement(12685..13575)
                     /locus_tag="RJ259_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDV7365991.1"
                     /translation="MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNIG
                     SHLLTFVRKGYKILHTASKDYKINSYETLFLKAGSYTLSNVGLSKGVYEAYLFFFDNA
                     FLIELIYKYKDFFKLDQKFQNYEIFWVKNDKILQGIFESFSPHFEENTQILDPIVSLK
                     FEEIFLHLLLNKNIYFISFLSGILKEFRLDLSQLFEYCGREFLSVNEMSNFAKLDLAT
                     FSKEFKKCFGQSPKKWLDEKRLQKAKILLKFSKKNINEIANECAFSSVAWFIERFKEK
                     YEQTPKQYQKTKNLYFLSKN"
     gene            complement(13572..14177)
                     /locus_tag="RJ259_000250"
     CDS             complement(13572..14177)
                     /locus_tag="RJ259_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDV7365992.1"
                     /translation="MWDKKIIAISDRKCVEIDFLKQIEKLAKAKVDAIVLREKDLSEF
                     EYYDLAKEVLSICTKQKVTCFLHSFDKVCLKLGHHYFHAPLSLLRKEPKLIKYFHILG
                     TSVHSKEELLEAMSYKVNYAFVGHIFESSCKVGLEPKGLDFLKSLLEFSQIPLYAIGG
                     INAQNIENFKDINIAGVCMREILMKEKDLKKYLLECRQNLR"
     gene            complement(14167..15312)
                     /gene="thiH"
                     /locus_tag="RJ259_000251"
     CDS             complement(14167..15312)
                     /gene="thiH"
                     /locus_tag="RJ259_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HDV7365993.1"
                     /translation="MQDYMQHLPHMQEIKSEILNKVLTQVQSYDESQFSAKDVKNALN
                     QTHLSIEHLKALLSSAAEDFIEELAFKSAKVKQKYFGNSISLFTPLYLSNYCNSKCVY
                     CGFQKGNKIARAKLNEAEIHEEMQAIAKSGLEEILMLTGEGREFASVEYIANACKIAR
                     EYFKVVGVEIYPMNEEEYKILHEKGCDYVTVFQETYNPLKYSKIHLAGEKRIFPYRFN
                     AQERALKAGMRGVAFGALLGIDDFRKDALATALHAHFLQQAYPHAEISISVPRLRPII
                     NNAKIHPKDVSEKRLLQVLCAYRLFLPFAGITISSRERIGFRDEVIKLGATKMSAGVS
                     VGIGEHKGEKKGDEQFEISDDRSVDEILSMLKRSNLQAVMSDSIYVG"
     gene            complement(15315..16091)
                     /locus_tag="RJ259_000252"
     CDS             complement(15315..16091)
                     /locus_tag="RJ259_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HDV7365994.1"
                     /translation="MQENLKNDKLKIGKYEFDSRFILGSGKYSLELIKSAIEEAKAQI
                     ITLALRRANTGEIANILDYIPKNITLLPNTSGARNADEALRIARLSRELGCGELIKIE
                     VISDSRYLLPDNYETIKACELLAKEGFTPLPYMHADLYAARAMRDAGAAAIMPLAAPI
                     GSNKGLCAKEFIQILLNEIDLPIIVDAGIGSPSQACEAMQMGVSAVMVNTAIAEAKDI
                     ALMARAFSLAVNAGRAAFLAGVASVSEAKASSPLTGFLRD"
     gene            complement(16094..16897)
                     /gene="thiF"
                     /locus_tag="RJ259_000253"
     CDS             complement(16094..16897)
                     /gene="thiF"
                     /locus_tag="RJ259_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HDV7365995.1"
                     /translation="MMRVKFNGKELDTDFKTSLEFFENISKNENDVWIINGFATKENI
                     ALNENDELFCIEKNTLPPKDALDAMMRARHTPKLHDKLKNGRVAVCGLGGLGSHIAIN
                     LARSGVGYLKLIDFDVIEPSNLNRQAYRVSDLGKFKTEALKEQISEINPYISVEICTL
                     KIDEDNLESLFKDIDIVCEAFDSAIAKAMIAQNFHRFYKDGILICASGLAGYGDSNSI
                     QTRKIAKNFYVCGDLVNGAKLGNGLMAPRVNICAGHQSNLVLELLANKE"
     gene            complement(16894..17085)
                     /gene="thiS"
                     /locus_tag="RJ259_000254"
     CDS             complement(16894..17085)
                     /gene="thiS"
                     /locus_tag="RJ259_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HDV7365996.1"
                     /translation="MIINGQKLELKELKFMDFIKEKGFKIELIALELNGEIVPKSEFE
                     NLILKENDKAEIVSFVGGG"
     gene            complement(17095..18192)
                     /gene="dapE"
                     /locus_tag="RJ259_000255"
     CDS             complement(17095..18192)
                     /gene="dapE"
                     /locus_tag="RJ259_000255"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HDV7365997.1"
                     /translation="MNAKEFLIELLKFKSVTPNDDGALNFIAMELSDFEAFFIEKEGI
                     KNLLLTKKFKDEGEHLAFGGHVDVVPAGEGWSNNAFAPVEKEGFIYARGAQDMKSGVA
                     AFVDAAKNADFKGARLSLILTSDEEGEAIYGTKAVLEWMQERDMLPDYAVVAEPTCVK
                     KIGDSIKIGRRGSINGKLLIRGKQGHVAYPEKCINPVHDFAPVLKLLAGFDLDPGSAE
                     FSPSKIVITDIRGGMGVCNVTPNDLKLMFNVRNSPDTSLEDVKSYVEKICHGLNYELE
                     LKQSSEAFLTNIDNKIVQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGV
                     CNDRIHAIDERVSIEEFEKLCLVFKDLIENF"
     gene            complement(18196..18795)
                     /locus_tag="RJ259_000256"
     CDS             complement(18196..18795)
                     /locus_tag="RJ259_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HDV7365998.1"
                     /translation="MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGA
                     FSIDMLYLFLLQFGLLNFLDNVIFMRSLAIFGFCFLTYMAYLMLRKKKESLNLEHKEF
                     KESLLKSYIKGAFLNGSNPFVIGFWLSAASVVLSSDHAYLMTLGLVVAILFWVSALAF
                     VVARYSHVFSAKVVFIINIISAIIIEYFALNLLYKTFLG"
     gene            complement(18788..19489)
                     /locus_tag="RJ259_000257"
     CDS             complement(18788..19489)
                     /locus_tag="RJ259_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HDV7365999.1"
                     /translation="MKNIMILSGAGLSAPSGLKTFRDNDGLWEEYDVMEVCSATGFRK
                     NPKKVLDFYDARRAQLQNVKPNHAHEKIAQLKEKWGKNLFVITQNVDDLLERAGCKDV
                     VHLHGFLPELRCLKCEEIFNIGYEKIIDKQCPKCKSKDLRHNIVMFEEQAPAYATLYS
                     LLNQTSLFISIGTSGAVLPVGRYASMCEKSILNIYEKDANLERYFDKIYIEDIISAID
                     KIALDIENFMKDGNV"
     gene            complement(19532..23551)
                     /locus_tag="RJ259_000258"
     CDS             complement(19532..23551)
                     /locus_tag="RJ259_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HDV7366000.1"
                     /translation="MITKDNLKQVLENLGFKNKNENYVKTINNYTLLIDYKNQSINYP
                     KEIKIHDKTTSNFSHPENFVVFECVHRLLEKGYKAEYLELEPKWNLGRDKKGGKADIL
                     VKDNENNPYLIIECKTTDSKNSEFIKEWNRMQEDGGQLFSYFQQEKGVKYLCLYTSDF
                     SDKLEYKNYIIQAYDNEEYLKEKELQNSYKKSNNNIELFKTWKESYELQYFKQGIFEE
                     NVNAYKILEITPTFDNLKELKEEGKYHEFAKILRKHNISGKENAFDKLVNIFLCKIYD
                     ETFNKNNLKFGYFGVMADTYANMQDRLMWLYKEAMKEFLGEKITFVSNEDIEKDFKQL
                     KIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLTQNS
                     TNQFLGNLFELFLQKGMKQDEGQFFTPIQICEFIMYSLPLQEMLSKSSKALRVIDYAC
                     GAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQNEINILY
                     ADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSVKGFLETLSDKSKNTYKLF
                     NDDINIETNNSIECFFCERANQILNDNAKAAIILPSSILNKDSIYKNTREILFQNFDF
                     IAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAENLKDNENF
                     YQNYLSAYCDFRKFDKELYSNFLNGNLDSKLAELEAFKDYRNAFRQTSDYKRLKESKI
                     YKESKDKQDLEDKAFLAYTQAIEKDKLLYFCLSLNQEVLIIKSPSDIKEQKKFLGYEW
                     SNRKGDEGLKELYNPYLSPLFERGNPQNETKLNTLICKAFLKTLSDIPKDLQGYASKA
                     RLIDMMDFEKVEFNKAISLNVKSRDELNPFKNSKYELVRLGEVCDLNKIRNQASATEI
                     EKMNLNSGNVKLLPSSKNYEWWTDEKTAGQFINEGEVITLGVARYANIKKHKGKFVSA
                     NNHILSVKDKSKIIFDFLYILLEICGQKLYKQGQQYPQFDTNIFYSFKIPLPPLEIQK
                     QIVAECEKIEEQHNTLSLSIKEYQKLIKAMLQKSGIIEDNQEYELNSILENLQKLESK
                     LDFNLLLSLIEEQISHSEVLVEETQSKERKQDFNAFKNFSKTIQELLQTLSTPPKDGW
                     KRISLKNEQYMELNPSKKEISKLDENMLVSFIEMASVSDKGYIQSKIDRSLNEVRKGY
                     TYFIENDILIAKITPCMENGKCAIAKNLTNNIGFGSTEFHIFRAKTGLDSSFLFYNLN
                     QQNIREKAALAMTGASGHKRVPISFYENLTIPLPPLEIQEKIVQNIELVEQQIDLLNL
                     KLEFLEKEKEKILQKYLFS"
     gene            complement(23560..25770)
                     /locus_tag="RJ259_000259"
     CDS             complement(23560..25770)
                     /locus_tag="RJ259_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HDV7366001.1"
                     /translation="MMNDTKEELISKLDLNSYLEEFKALFARDKEIFLQGDSNLHFKR
                     IHELCEVEFPTMPELSNLDKALVHLSKQGILHLDEIFEFVKIFRYFEKLKKIKLGTNL
                     GSWLQKIEFVSGALELCLNFDEKGELKESLDERLVNLNAALRLKNESIIAEFKKFCYT
                     KALMPYLIDTQIHLINNLEALLVRGGFNHAIKAKIIGRSSGGGFYIVPLSVENLQNDI
                     EKIKNQKEEIYYEYAKNFSAFLAKNLPFLKFINTAFDLFDHYSARVLLAKKRDFEFVL
                     CDQSTDLVLKNFAHPALKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKH
                     LLPMHIKASESKIGTFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSKKNLLLGIDE
                     IELGTDFEEAACLYSVLISKLIANNLKIIITTHHKRLAMLLAKNEQVELIAALYDEEL
                     SRPKYEFLKGTIGKSYAFETALRYQIPPNLVSEAKKLYGEDKENLEELVGKNINLELE
                     LKAKLENVEKKEQKVDEILLSLKEQKEKNEQEFRTSLRNLEFKLHKAIEEAKKTIQLK
                     DIKDKQRSLNKTNELKKEIILPSMEQNEELRVGDFVKYEKIKGKIISISKNDAMVESD
                     GIKLRVPLKLLKKSTPTPKISPKTSISVAKPTNLSVSLDLHGLRSDEAISRLDKFISD
                     ALLAGFDEVLVYHGIGTGKLAFAVREFLKTHKSVKGFNDAPINQGGFGAKVVRL"
     gene            complement(25760..26110)
                     /locus_tag="RJ259_000260"
     CDS             complement(25760..26110)
                     /locus_tag="RJ259_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366002.1"
                     /translation="MSRFFLYFLIILILALITFALREKLGKKTKPFFGILLVIFIVLA
                     VFFEFENTQKSHLRTDIIVAFNQNKNILCKDINVSKAYFNYEFGTGSFISKDNNQSFN
                     SLIIDIKDCRLNDE"
     gene            complement(26103..27401)
                     /locus_tag="RJ259_000261"
     CDS             complement(26103..27401)
                     /locus_tag="RJ259_000261"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HDV7366003.1"
                     /translation="MMQNIHFIGIGGIGISALARFLKEKGFKISGSDLKESKITNELE
                     KEGVKVSIPHHKDNILNKDLVIYSAAIKEENPEFKHAKELGIKCLSRKEALPLILEDK
                     RVFAVAGAHGKSTTSSILASLLDDASVIIGAILKEFGSNMIYKESQNLVFEADESDSS
                     FLNSNPYLAIVTNAEAEHLDHYGNEVSKLHYAYTQFLDTAKIRVINAEDEFLKNYKNE
                     SIKLYPSKDIKNCTMCIENFKPFTSFELKDLGEFKVFGMGYHLALDASLAILAALNFL
                     DIETIRTRLKNYQGIKKRFDILHADENLVLIDDYGHHPTEIKATLSAAQEYARLGGYK
                     KITAIFEPHRYTRLAANLKEFAKAFEGVDELIILPVYAAGEEPIELDLKAVFPKALFV
                     EDIKREGKFLVASKGQVFEEGLIIGFGAGDISNKLRQKNE"
     gene            complement(27465..>28947)
                     /locus_tag="RJ259_000262"
     CDS             complement(27465..>28947)
                     /locus_tag="RJ259_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HDV7366004.1"
                     /translation="FLNLKILNLKLKPVNLRLFPLIALNLILIIVYVIALRGPFKHVA
                     INVQNYSFSEYSVVNDTMLNPIMAFSWALKQYKEEAALKAITPLKAQELKEKLFDYLH
                     QSPINLKAEKNHPSVFVNLMESFGLNLADFTNTEHNFLGSLDKHFKQDFLFKRFLSSS
                     NGTIPSFANLFFVSPFSNISTSKFQKTYLDLTPIAIYKKAGYKVIFVSAGNGSWQNIK
                     NYLSILGVDEIIDENILMKEYNGAKDSENGYGVADEFLYKKVYDLLQKNPHNTLIIAL
                     TISNHPPYKIPQNDLPKLQNIPQTLLNMLPYEKDKQDNIIKAYTYANNEFGKFLDKVK
                     QSSFKDNVIIAATGDHRVREMSIDLNSQKAFAYSVPFYLYIPKDLQDDIYYDKDRVGS
                     HKDIFPTLYALSLNNVKYLSVGGRNMLARPSDEKLEFGINDAVWIDKKGIYSGGKGYY
                     FESNDTLKDMNKAFNLDVYTKDFDKFYRELNLYQLAERLGISK"
BASE COUNT         9783 a         5025 c         3815 g        10324 t
ORIGIN      
        1 aagtatatta aaatatcaaa atgtttgaaa aatatttaaa atcagctata tttttagctc
       61 tttatccctt agcaatgtta gcttctaatt tgcacgaatt tatagcacta agtcaaaata
      121 atgaatccta tctcattaag caaatgcaaa gcgaacaagc aaatttagac aaagaacaag
      181 cttttagaaa ttacctaccc tctcttagtc taaactcagc ttatgtagcc aacaataaag
      241 atcgcttcat tatcgatcca caagaaagtt tatttgctaa agtttctctt aattttttgc
      301 tttttgatgg gggtgctaga gaggctaatt taagagcttt agaaagcaga gaaaaattaa
      361 gccttttaga caaagaacaa aataaaaatt accttgccct aaatgcaatc acactttatt
      421 ttaacacctt aagtcttgaa aaaattttac tagccaatca acaaaaagta tcttttttaa
      481 aatcaacttt tgaaagattg caaaaatttt acgacgcagg acttagccct aaagatgaac
      541 ttgaaagcat taaggctaaa taccatttaa gcttattaga gctcagtcaa aatgaattaa
      601 aacttgccaa tatacaaaaa gagattaaaa ttttaagcga tacagatttt aaagtgcaag
      661 ggaatgcttt tttagaaaat ccgcaacaag aaaaaagtca aaactatgaa gtaatgatag
      721 ctaaagaaca aatcaatctt gctaaagaaa gtgtaaattt agcaaaagct gaatattttc
      781 caaaatttta tattcaagat aattttaact tttataaaaa caattataat ccaaaagttc
      841 cagctccttt tgcaaattta gcggatcaat tcttagaaaa atattctcaa ggtaatcaat
      901 ttattttagg tatggaatgg aaaatttttg atttcaatgc aagggctaaa gaagttgaaa
      961 aagagcgttt aaatgttcaa atagccaatg caaatgcaag atttagcgag agaaaaaata
     1021 aagaagaatt aaattattta gacaaaagtt taaaagtttt acaagaacaa attttagctc
     1081 ttaatcttag cttaaatgct gcaaatttag cttttgaaag tgtagataaa aaataccaag
     1141 caggacttgt ttcttatgta gaatatcttc aagctttaga ggttaaattt aaagcacaaa
     1201 gcgatttaga gcttgctaaa aatgaatttg aaattactaa agcaaattat tattttaatg
     1261 cgggtataga tcttaattca aaggttaaag aatgaaaaaa attctatttt tacttcttgt
     1321 ttttaattgc gcctttggcg aagaaattta cgcaagtttc aatgtagaag catcaaaaca
     1381 aagcaaactt gcccttgaaa gcataggttt ggttcaaaaa attcctgtag aaattggaca
     1441 aaaagtcagc aaaggagaac ttttacttgc tcttgatcaa gaaagtgaaa aaatagctct
     1501 tcaaaatgct caaaattctt atcaacttgc ccttgtagaa tacgaaaata ccaaaagtag
     1561 gatgcaaaaa atcaaagctg tagaaaatgt tatagacaaa caaagctatg aagatatgaa
     1621 agctaagttt gatgctgcta atttaaattt aaacaaagca aaaatcaata tagcttatta
     1681 taaaaatatc atggcaaaaa aagaattacg cgcaccttat gatgctatta tcgcaaacaa
     1741 atttatacaa gtgggcgaag gagtaggagg agtagctcaa cctttaatag aaattttttc
     1801 ctatccacaa agcaaactga ttttaagttt tgatgaaaaa tataaagata aagttagatt
     1861 aggcgatgat ttcttttata aaatcgatca aaatggtaca gaattgaaag gaaaaatcaa
     1921 ccttatttat ccaagtatag aagtaaaaac aagaaaaatt tatgctgaag tgcaaaccac
     1981 aaatctaaca ccagggcttt ttggtgaagg tagaatcatc actaaagatt aaaaatgttt
     2041 aaactagcta taaaccgacc tattaccgtg ctaatgtttt tcttagctct tatgattttt
     2101 gggctaatct ctgcttttag catgagtgta aatttatttc ctaatgtttc catacctctt
     2161 ataaagatta caagcaaggt aaatggggat ttaaatttcg tagaatcaaa agtcactaaa
     2221 gaaatagaaa atgctctaag tgagattgat ggagtaaaga ccataacctc agctgcgtat
     2281 gataatttta gtgtgagtgt agtcgagttt aaactaggta aaaatcttga agtagctgct
     2341 aatgatgtgc gtgataaaat aggaacttta agcctacctt ctaagcctga aattgaaaaa
     2401 atcagctcag attctggttc tgctatttcg ctttttttat attctaaaga taaattacaa
     2461 ctcatgcgcg aaatcaatga caaaataaaa ccttttttgc aaagagttga aggagtaggt
     2521 aaaatcgaag ctaaggggtt tttagaaccc caaattcgca tagaattaaa accaaaccaa
     2581 cttagaaaat acaatcttaa cgcccttgat gtagcaaata tcatcaaaag tcaaaatttt
     2641 aaacaagccc taggcgaact taacaacaat caagataact atatcatcaa aggctatttt
     2701 gaagccacaa atttagaaga acttagcaat cttcgcataa aaacaggagt atttttaagt
     2761 gatattgcta atatttcaag cctttatgaa gatgaaaaac aaagtgcttt atacgaaggt
     2821 aaagaagggg tgcttttaga actcggaaaa atcacaaatt ataacaccct tgaaatgatt
     2881 aaaaatgtca aaaatgcctt gcctatttta gaaaaacaaa ttccaaaaga tataagcatt
     2941 aatatgcttt atgataaaag cttaaatatc cacaagcacc tttctcaagt gatttttgat
     3001 atggttttgg ggatttttct aacccttgtt atcgtgtttt tatttttaag aaatttaagt
     3061 acaactctca ttgcttgcat agctatacct acttctatca tttcaacttt ttttattatc
     3121 gatcttttag gctatgattt aaaccgctta acttttatag ctttaacctt aagcatagga
     3181 atttttatcg atgatgctat agtagtgatt gaaaatattg ctaaaaaact aaaaacttat
     3241 ccgcctttac aagctgcttt tttaggtatc aatgaaatag gttttagcgt tttaagcata
     3301 agtatagttt tactttgtgt ttttatccct atttcttata tgaactctat atcagggctt
     3361 tttttcaatg ccttaggcat aagcgttgca agtgggatag ttataagctt tttggtttct
     3421 gtatttttaa tacctagtat tggggcaaga tttttaaatc caaaagaaaa caagttttat
     3481 gaaaaaacag aagctttttt tgaaaaaata gagcaaaagt atgaaaattt actctataaa
     3541 attttacaaa ataaagtaaa atttatccta gccactcttg tttttatagg gctttctttt
     3601 gctttagcca ctcgcatagg gcttgatttt ttacctatgg aagatgatag tgaaattcaa
     3661 gttttgcttg aaagcaaaaa ggatttaagt ttagaagcca tgaaagaaaa aagtttaaat
     3721 ttgcttgaaa aaatcaaaaa tgatagcaat gtcaaatacg cttttttact tgtaggctat
     3781 gatgatgcca aagatgctac aaaggctaaa atttatgtta aacttaaaaa tttagacgaa
     3841 agaaatttaa gacaaagtgc catagtaagt ttatatcgtc aaaaatttca agatgaaagt
     3901 ttaaaaatca aaattttaga acttccaaag atagagggtg caggcattga tgatcccgtg
     3961 caatttttaa tcttaggaga tgatttaaac actctaaaag aagctgcttc tcaggcaaaa
     4021 gaaattttag gcactaatgc gcgcattgta gatataagcg ataatgctaa tgctacaaaa
     4081 gatgaagtag ccttacacat caacaaagaa aaagccaaac ttttagatgt caatcctcaa
     4141 tatatcgctg gggttttagg gtattctttc tcgcaactta gcgtaggaag catggataga
     4201 ggcaattcaa aagatgatat tatcctaagt tttgctccag aatttaaaaa agacatagaa
     4261 gctttaaagc gcattagcat taaaaacaac caaggtataa atttagaact ttcaagcgtg
     4321 gtggatttta tatacagtaa agatttaaaa actatcaatc gttacaataa aaaccgctct
     4381 gtgaaaatca cagctggagt gaatgatctt tccttaggag cggtgcaaaa acttttacta
     4441 gataatatgg ataaaatttt aaataacaat ccaagtctta gctatgcttt ttcaggcttt
     4501 atcaatcttt taggtgaaac cgtgcaaggt tttgctatgg cagtagcact tgcttttgtt
     4561 ttaatttatc ttgttttagc cgcactttat gaaagtttta ttctgccttt aatcatcatg
     4621 ataaccatgc ctttagcctt tggcggagct tctatagggc tttttatcac agggcataat
     4681 ttttcacttt ttgtacttat tgccatcatc ttactttttg gtatggtggg gaaaaatgct
     4741 attttactcg tagatgtagc taataaaaaa tgccatgaag gtttagatcc cgataaagct
     4801 cttttaatcg ctggaaaatc acgcttaagg gctatattaa tgacaacttt tgctatgatt
     4861 tttgctatgc tcccacttgc tctttcaagg ggtgcgggct atgaagctaa ttctcctatg
     4921 gcaatagcca ttatctttgg acttataagt tcgactttgc ttaccttact cgtagtacct
     4981 gcacttttta aattttgttt taaactagat agcaaattaa gaaaaattta tgagagagaa
     5041 aaattaaatt aaccaaaatg attaatttaa tttttttaag tattattctt ataaagtgct
     5101 tttaagttat cataggcgat ttgtattttt tcaaactgtt ctcttgcgta agctttttct
     5161 attgcacttt ttccttgatg aaaatcagga tgataaagtt ttaccaaaat caaatatttt
     5221 tgtctgattt cactaagatc attttgcgga gtgcattcta aagtattaaa ataattacta
     5281 aaaagcttag ctaaagcatt aaatttccat ttcatatttt ctttattgtg aatattttgg
     5341 cgaaattttt tatactcttc gcggtcaact tcaaaattca cgcaatattt taaatgctcg
     5401 ctctcatctg caaaagcttc aaaaagttca agggtattct cgtttttata ttctaaaatt
     5461 agaatatttg tcatttcatt atattctata ttatgatctt gaaaataatt tcttatataa
     5521 gtaataaata atttttcatt agagcttaac ttcatcaaaa ttctacccgc aacaaaatca
     5581 atcttgataa acaacatagg cttaagcata ttattttgct caaaaattaa tctaaaagtt
     5641 ttaaaatgag catcttgtaa attctctata ccttcatttg tgcttttacg atatttttga
     5701 tctaaaactt ttaagaaata acggcgctgt ggaatttcat tttcttcaaa aaaagaaaaa
     5761 attttatttt ttcgtcctat gacctttgtg aaatttttgg taatcaagtc tttaaaatac
     5821 tgaaatacgc taatatcatc tgtattaaca ttgatagttt ctaaagtttg cacgatttgc
     5881 atctatttct cccataaaac ctcattttca aaaagctctt tagtgccttt taaaatttca
     5941 ttgggtgtat aatcggcttt ataagataaa gattgacact tttttacaaa atacccaaga
     6001 taaatataat ctaagttcat ttttttagct atttgtattt cattgagcaa agaaaattta
     6061 cccaaagaaa aatacgaaaa atcaggatca taaaaacaat aaatgcttga aattccatcc
     6121 tctaaaatat caatcaaatc aacacaaacg agcttatctt ctatataaaa tgcaagctca
     6181 tatccaaaat tcataaaacc atcgacataa agattataat actgcttaaa gcttaaatca
     6241 taacgcttcc agttcttttt ttcttccata aaacgatggt atttatcata taaaaacaaa
     6301 tgttcattgc ttaaattggg tgttctaagc ataactttgg tgttaatatt tttatttata
     6361 acccttcttt cactttttga aaaattatat tcattaacta aaattctaag acttaaacat
     6421 tcatcacaat ctttacaaat agggcgtgaa aaatacctac caaaacgacg ccaacctcgt
     6481 tttattagcc cattattgat ttctttaggg caattttcaa tgtatttata ctctattctt
     6541 gagcgtttat cttttaagta aggacactga tcttcaagag tacaaaaacc aatctcaagc
     6601 attaaatttt cttaatatct gcatttttga taaattcgga aaattcatcc tgtagttttt
     6661 cttgctttaa gaaaatttct tgcatttcct tatctatgtt tgtttcttga tttttttcgc
     6721 gaatatcttt agctagtttt tctaaatttt ttacacttgc accactcttg cttgatttct
     6781 tcgctaattt tggagtattg gtgttagctt gcatttcttt tttaatactt ttaagactgt
     6841 ctaaaaaatc catctattat tctctacttt ctcgtatttt tttaagcgta gcagctattg
     6901 cagctataac ttcttcttta ttttcttgat gacgatcttc tgttttttct aataattctt
     6961 gcatatgtgt ttctatgaaa gaggtgtcta aataccccct tctaaattct cttgtttttg
     7021 taatggcaat taaaaatggt attgttgttc taatatcatc aatcacaaat tccttcaaag
     7081 cacgctcaag tttattaacc gctaaatcat aacttgttgc tttaataata agctttgcaa
     7141 gcatggaatc ataataaggc ggcacagtat agtctttata aatatgacta tcaaccctaa
     7201 cagatggtcc aagagctggg tagtattctc ctatttttcc aggacttgga ataaaatttt
     7261 tccatacatt ttcagcagta attctagctt caatagcaaa acccctaggt ttaatatcgc
     7321 tttgttctaa gtccaaaatt tctcctgccg caatacgaat ttgtcttaca ataagatcaa
     7381 tacctgtaat ttcttcagta attggatgct caacttgaat tcttgtattc atttccataa
     7441 aataaaagcg attataatca tcaagcaaaa actctatagt tccagcattt gtataaccta
     7501 cagccttagc agctgccaca gctgtaacac ccatggtttt tctaagatta tctgaaattc
     7561 cagggcaagg tgctatctca attacctttt gatgtcttct ttgaatagaa caatcccttt
     7621 cacaaagatg gataatattt ccgtagttat ctcctaaaat ttgaaattct atatgtctgg
     7681 gattaactac atatttttcc ataaatactt catcattatt aaagtatgtt aaagcttctc
     7741 ttttgcaaga ttcaaaggca ttttcaagat cttgttcttt atgaacaacg cgaattccgc
     7801 gtccacctcc accacctgaa gcttttaaaa taacaggata accaatcttc tcagcaaaaa
     7861 ttttaatttc ttccatgcta taggaattta atttttcagt ccctggaaca ataggtatgc
     7921 catttttagc cattaactta cgagcgatat ttttatttcc catcttatgg attacttcag
     7981 attttggacc tataaaaata attccagcat cttcacaagc cttagcaaat tcgtaattct
     8041 cacttaaaaa tccataacca ggatggatcg catcagcacc acaagcctta gcaatctcga
     8101 caatacgaac aacatctaaa tatcctctta tagcatccgt tcctatgcga taagcctcat
     8161 ctgcgatttt tacatgcaaa cattcacgat caggctctgt aaaaactgca acacttttaa
     8221 tatgtaaatc tctacaagca cggattactc taacagctat ttcagctcta tttgctatga
     8281 gaattttatg gatttgattc ataatttgcc ttttttgtta tatttttatt gttaatttta
     8341 gcaaattttc cttacaaaaa cttagcaaaa aatttaattt attttagtta taataaaact
     8401 ttttaaaatt ttaattccaa taaagaaaag ttataattat aatggttgct gataaaagat
     8461 tattttattt aaattgtatt ttaatcacca taggaatagt attttcatac tctcttacag
     8521 cttttactgt tctttttctt gactatagcg agtttcattt ttttattcgt cagctttttt
     8581 ttggaattag tggcatactt ataatgtttt ttatttctcg attggatcct gataaagcac
     8641 tttctaaaaa aattatttta gctattttga ttatttcttt tatctttatt atcattttac
     8701 catttttacc ttctgcatta gcaacagcta gcggaggagc taaacgctgg atacgcttag
     8761 gcccactctc tatctctcct gtggaatttt ttaaaatagg attgatttat tttttagcat
     8821 ggagctatac aaggcgtatt gatgatagca aaaaagctat cagacacgag gctttaattc
     8881 ttctacctta ttgcatctta gcttctatag ttataggata tatttatatc actcaaaacg
     8941 atttaggaca aagcgtaatt tctttctttt tgattctagc tttagctttt tttgcaggag
     9001 ctagtaaaag gctttttgct tttggaactt taatcattat gatgataggt ataatggtaa
     9061 tttttagcaa ccaaagaaga attcaaagaa tcgcttcttg gtgggggaat atacaagatg
     9121 cttttttacc tatgcttcct gattggctag caaatgcttt gagagtaagt agcaacagcg
     9181 aaccttatca gatttcgcac tctttaaatg ctatagccca tggaggaatg tttggtgaag
     9241 gcctaggact tggaactttt aaattaggct ttttaagtga agtgcatact gactttgttc
     9301 tttcaggaat tactgaagaa ataggactct taggtcttgg agttatttgc tatatttatc
     9361 tttggatgat tttaagaatt tttagaattg caggaagatg cgaagctaaa caagatttta
     9421 ttttttgttc aggcatagcc ttacttttac ttttttcttt ctttatgaat gcttttggta
     9481 ttatttctct tactccacta aaaggtgtag cggttccact tttaagctat ggaggaagtt
     9541 caatgtgggc aatttgcata ggcataggat atgtattaat gatttcaaaa aaggttaaat
     9601 tatgacaata gctttaacag gtggcggaac tggagggcat ttagccatag tgcgttgctt
     9661 attagaaagt gcgattaaaa aaaatataga atgtatatat ataggcagtc aaaatggtca
     9721 agataaagct tggtttgaaa atgaagtacg ctttaaggaa aaaatttttt taagctctaa
     9781 aggagtggtt aatcaaagca aatttggcaa aatcagttct ttactccaca ccttaaaact
     9841 ctccaaagat tgtagagaaa tttttaaaaa ataccacatc caagccgttt ttagtgtagg
     9901 tggatatagt gcagctcccg catcttttgc ggctttatcc tcacatttgc ctctttttat
     9961 acacgagcaa aattcaaaaa gtggctcttt aaacatgctt ttaaaacctt tcgctacaaa
    10021 attttttagc gcctttgaaa aagaatttag tccttatcct gtggcaaata aattttttga
    10081 taatgctagg actcgcacag aattaaaaaa tattattttc ctaggaggat cacaaggagc
    10141 tagctttata aacgaactag ctttaaatct cgccccaaag cttcaagagc aaaacatcaa
    10201 aatcatccat caatgcggaa aaaatgattt tgaaaaatgc aaaaaacact accaaagctt
    10261 aaatatccaa gctgatgttt ttgactttag ttcaaatttg gaagaaaaaa tgaaaaatgc
    10321 agatctagct atatcaagag caggtgcaag tacccttttt gaactttgcg ccaacacctt
    10381 gcctgctatt ttcatacctt atccttatgc agctaaaaat catcaatact ttaatgctaa
    10441 atttttacaa gatcaagctt tatgtcaaat tttcacgcaa gattcgatca atcttgatga
    10501 ttttttaaaa gcaatgttaa aacttaactt agaagatatt tctacaagat tgcaaaatat
    10561 agcacaaaaa aatggtgggg atattttact agaaaaagca ctatctgata acttggcttt
    10621 tataagataa atatccaaag atatttacca aaacccctac aaaaatcaac atcaaaatag
    10681 caagtgaaaa attctcaaat ttatcatgta aaaagcctac aatccactgc ccttgtgctg
    10741 cgattaaata tccaaaacct tgagctaaag cagaaagctt tgctgctact tgggtatttg
    10801 aacttttttg agcgataaaa agcaatgcaa tgccaaaaac tccaccccat ggaaaaccca
    10861 tgataaaagc actaatgata atagaagttt tactatcaaa aacaaaaagc ataccaaaag
    10921 cgatcacata catactgcac aaactagcta tgtaaaaagt atgtaaattt tgtcttaatt
    10981 ttcctaaaag taaagggcca aaaagagaca ctggagctgc aacaagttga gcaaataaaa
    11041 ccatacttgt agaaaattct ttatcaaatc ctttttctac aacaatttga acataccaaa
    11101 aaaacaaaga ataagctaaa aaactttgaa atcccataaa aagagtaatt ttccaagttg
    11161 ttaaatttgt aaaaagattg atttttttat aagctttttt cttaatgcga aaaaatctac
    11221 catttttagc ttgaggatag taaactacta aagctacaaa agaaaaaata gcccagaaaa
    11281 acatagctcc agctaaatca aatacactaa gcaaaggtat agctaaagca atacccataa
    11341 tcgaagaaat actcaaaaca agactataaa ttcccattat acttgccatt tttttggaaa
    11401 tttttcttta ataaaactag gaagtaaaac atttgcaatt gctataccac agcccattgc
    11461 taacattcct aaaaataagc catatacacc aaaataagaa cgaataattt cgcctaaaaa
    11521 aattaaaaaa attccaaaaa caatagcacg aataggagaa aaatacccca caataaaaga
    11581 aatacttcca aaagctatca aaggaagact tgtaagtatg cccgctacgg ttgagtttaa
    11641 ataatactta tctttaataa tatcaataat agggcccact gcagtaattg gggctctaag
    11701 attaaaagct acaataataa caataataac attaatccaa aatatctttt taaaagaagc
    11761 cataaaagcc ttatttgtta agttctactt tgaatatttt accttctgcc atcttaggaa
    11821 tccataaaat attaccttca ataaatatat ctgcaggacc tttcatcaaa ggaaattcaa
    11881 gttttacaga tttaacatta tctaaattat aaatatatcc atttagatta tttccccaag
    11941 aacttaccaa taaaccatct ttataaggaa ctattccatc ataagattct ttttcatttt
    12001 taattatact gagttctttt gtatttaaat cataagccat tacaacaccg ccacttacac
    12061 catcaggatg ataaccagct ataaaaagct tatgtttttt tctatctaga tataacccat
    12121 ttggaccacc aaattttact aaatcaagtt ttaataattc atcatattgc ttagttttta
    12181 aatcaacctt taaaataagc cctgtgccag tatcgctaac caaaagcgta ttgtcgtcta
    12241 atttttctat gtcatttaaa aagattgcac ctttaatagg taaattaaaa atttcttttt
    12301 tagttttaag atcaaaaccg cgtaaaacat cgatatctac cacataaaga gtttttccaa
    12361 tctccatcat gccttttggt gcattaagat gggttaaaaa tttatattct agcactttgc
    12421 catttttatc aagcttagaa ataaatccat cattatcttt cgccaaaggt tcaagttttt
    12481 ctcctacatt agatacataa acatagtttt tatctacaaa aatactttca gggcttttaa
    12541 aaccatcaaa ttcttgatat tttaattcac ttgcaccaag caaacttcca agaagcgcta
    12601 aacttaaaac atattttttc atattttctc ctttatttaa aaatattttc attgaattat
    12661 atttatttag ataaaaaaaa tgtgctagtt ttttgataaa aaatacaagt tttttgtttt
    12721 ttgatattgc ttaggagttt gctcatattt ctctttaaat ctttcaataa accaagctac
    12781 cgaagaaaaa gcgcactcat tagctatttc attgatattt tttttagaaa atttaagtaa
    12841 aatctttgct ttttgcaacc ttttttcatc taaccatttt ttaggacttt gtccaaaaca
    12901 tttcttaaat tctttagaaa aagttgctaa atctaatttc gcaaaattag acatttcatt
    12961 tacgcttaaa aattctctac cacaatactc aaaaagctgg gaaagatcaa ggcgaaattc
    13021 ttttaaaatt cctgataaaa aactaataaa ataaatattc ttatttaaaa gcaaatgtaa
    13081 aaaaatctct tcaaatttca aactcactat aggatctaaa atttgcgtat tttcttcaaa
    13141 atgcggtgaa aaactttcga aaattccttg caaaatctta tcatttttta cccaaaaaat
    13201 ttcatagttt tgaaactttt gatctagttt aaaaaaatct ttatacttat aaataagctc
    13261 aattaaaaat gcattgtcaa aaaaaaataa ataagcttca taaactcctt tactaagtcc
    13321 tacattgctt aaagtatagc tcccagcttt taaaaacaaa gtttcataag agttaatctt
    13381 ataatctttt gatgcagtgt gtaaaatttt atatcctttg cgaacaaaag ttaaaagatg
    13441 acttcctata ttaacaaaag tagaatgcga agtatccgtt tgtgtatatt tagcaaaagt
    13501 gcaagattta atttttttat aattgacacc ttttaattgc tttaaatctt ctggtaaaga
    13561 aagaatttta ttcatcgtaa attttgccta cattctaaaa gatacttttt aagatctttt
    13621 tctttcatta aaatttcacg catacaaaca cctgctatat ttatatcttt aaaattttct
    13681 atattttgag cattgatacc gcctatggca taaagtggaa tttgactaaa ttcaagtaag
    13741 gattttaaaa aatcaagccc tttaggttct aaacccacct tgcaagaact ttcaaaaata
    13801 tgtcctacaa aagcataatt taccttatag ctcatcgcct ctaaaagctc ttctttacta
    13861 tgaactgaag tgccaagtat atgaaaatat tttattaatt taggctcttt tcttagcaaa
    13921 gaaagcggcg cgtgaaaata atgatgccct aattttaaac aaaccttatc aaaagaatgt
    13981 aaaaaacaag tcactttttg ctttgtacaa atgcttaaaa cttcttttgc taagtcatag
    14041 tattcaaatt cacttaaatc tttttctctt aaaactatag catctacctt agccttagca
    14101 agtttttcaa tctgctttaa aaagtctatt tctacacatt ttctatcgct tatggcgatg
    14161 atttttttat cccacataaa tgctatcact catcacagct tgcaaatttg atcttttaag
    14221 catgcttaaa atttcatcta cactcctatc atctgaaatt tcaaactgct catcaccctt
    14281 tttctcgccc ttatgctcac ctatacccac acttactcct gcactcattt tagtagcgcc
    14341 aagcttgata acctcatctc taaaacctat tctttcacga cttgaaatgg taatgcccgc
    14401 aaaaggtaaa aaaagtctat aagcacaaag tacttgcaaa aggcgttttt cactcacatc
    14461 tttaggatgg attttggcat tattgataat aggtcttaaa cgtggtactg aaatagaaat
    14521 ttcagcatgc ggataagctt gttgtaaaaa atgtgcatga agtgccgtag caagagcgtc
    14581 ttttctaaaa tcatctatac ccaaaagtgc cccaaaagcc actccacgca tacccgcttt
    14641 taaagctctt tcttgagcat taaagcgata aggaaaaatg cgtttttcgc cagctaaatg
    14701 aattttagaa tattttaaag gattataagt ttcttgaaaa acagtcacat aatcacaacc
    14761 cttttcatgc aaaattttat attcttcttc attcatagga taaatttcaa cgcctacaac
    14821 cttaaaatac tctctagcta tcttgcaagc atttgctata tattctacac ttgcaaactc
    14881 cctaccctcg cctgttaaca ttaaaatttc ttctaaacca cttttagcaa tggcttgcat
    14941 ttcttcgtga atttcagcct catttagctt agctcttgcg attttattgc ctttttgaaa
    15001 accacaataa acacatttag aattacaata atttgacaaa taaagtgggg taaaaagaga
    15061 gatagaattt ccaaaatatt tttgcttgac tttagcggat ttaaaggcta attcttctat
    15121 gaaatcttct gccgcacttg aaagcaaggc ttttaaatgc tctatgctta aatgtgtttg
    15181 atttaaagca tttttaacat ctttggcact aaattgactc tcatcatagc tttgaacttg
    15241 agttaaaacc ttgtttaaaa tttcgctttt tatttcctgc atgtgaggta aatgctgcat
    15301 ataatcttgc atgattaatc ccttaaaaag cctgttaatg gagaacttgc tttagcctcg
    15361 ctcacacttg ccacacctgc taaaaaagcc gctcttcccg catttactgc caaagaaaaa
    15421 gctctagcca tcaaggctat atctttagct tcagctatgg ctgtatttac catcactgca
    15481 cttactccca tttgcatagc ttcacaagct tgtgaaggac ttccaatacc cgcatctaca
    15541 atgataggca aatcaatttc attaagcaaa atttgtataa attccttagc acataaacct
    15601 ttattactcc caataggcgc tgctaaaggc atgatagccg cagctccagc atcacgcata
    15661 gctctagctg cgtaaagatc agcatgcatg taaggtaggg gcgtaaaacc ctctttagct
    15721 aaaagctcac aagctttaat cgtttcataa ttatcaggca gcaaatacct actatcactt
    15781 atcacttcta ttttgataag ttctccacaa ccaagctctc ttgaaagcct tgcaatgcgt
    15841 aaggcttcat cggcgtttct tgcgcctgaa gtgttgggta aaagtgtgat atttttaggg
    15901 atataatcaa gtatattagc aatttcccct gtatttgcac ggcgtaaggc tagagtgata
    15961 atctgtgctt tagcttcttc tatagctgat tttataagct ctagcgaata ttttccagaa
    16021 cctaaaataa atcttgaatc aaactcgtat ttgcctattt ttaatttatc attttttaaa
    16081 ttttcttgca tttttactcc ttatttgcta aaagctctaa aacaaggtta ctttgatgtc
    16141 ctgcgcaaat atttaccctt ggcgccataa gtccatttcc tagcttagca ccatttacca
    16201 aatccccaca cacatagaaa tttttagcaa tttttcttgt ttgtatgctg ttgctatcac
    16261 catagcccgc aagccctgaa gcgcagatta aaataccatc tttgtaaaat ctatgaaaat
    16321 tttgcgctat cattgctttt gcgatagcac tatcaaaggc ttcacaaact atatctatat
    16381 ctttaaacaa agactctaaa ttatcctcat cgatttttaa agtacaaatt tcaacgctga
    16441 tataaggatt aatttcgcta atttgctctt ttaaagcttc ggttttaaac ttgcccaaat
    16501 cacttacacg ataagcctga cgatttaaat tactaggctc aatcacatca aaatcaatca
    16561 actttaaata ccccactcca cttcttgcta aatttatcgc aatgtgcgat ccaagtccgc
    16621 ctaaaccaca caccgccacg cgcccatttt taagtttatc gtgaagcttt ggtgtatgtc
    16681 ttgctctcat catagcatct agtgcgtctt ttggaggtaa agtatttttt tctatacaaa
    16741 aaagctcatc attttcattt aaagcgatat tctcttttgt tgcaaaacca ttgataatcc
    16801 atacatcatt ttcatttttg ctgatatttt caaaaaattc caaacttgtt ttaaagtctg
    16861 tatcaagttc tttgccattg aattttactc tcatcatcca cctcctacaa aacttacgat
    16921 ttcagcttta tcgttttctt ttaaaatcaa attttcaaat tcgctcttag gtacaatctc
    16981 tccatttaat tccaaggcga taagttcgat tttaaaacct ttttctttga taaaatccat
    17041 aaatttaagc tcttttaact caagcttttg tccattgata atcattctaa acctttaaaa
    17101 attttctatc aagtctttaa aaacaaggca aagtttttca aattcttcta tgcttactct
    17161 ttcatcaata gcgtgaattc tatcattaca aaccccaaat tctactacct ttacaccgta
    17221 ttttgcaaaa taccttgcat cacttgtacc gcctttggta ttaagctctg gcacttcatg
    17281 agtgattttt tgaacgcttt cattcatttt ttgaacgatt ttattatcga tatttgtcaa
    17341 aaaagcttcg cttgattgtt ttagctctaa ctcatagttt aaaccatgac aaattttttc
    17401 tacataactt tttacatctt ctaagcttgt atcaggggaa ttgcgtacat taaacataag
    17461 ttttaaatca tttggcgtta cattacatac ccccatacct ccacgaatat cagttataac
    17521 gatttttgaa ggactaaatt cagcacttcc aggatcaaga tcaaaacccg ctaaaagctt
    17581 taaaaccggt gcaaaatcat gcacaggatt gatacatttt tcaggataag caacatgccc
    17641 ttgttttcca cggattaaaa gttttccatt gatagaacca cgacgcccta ttttaatact
    17701 atcgccgatt tttttaacac aggttggctc tgcaaccacg gcataatcag gtaacatatc
    17761 tctttcttgc atccattcta aaacagcctt ggttccatat atagcctcgc cttcttcatc
    17821 acttgttaaa ataagactca gtcttgctcc tttaaaatcc gcattctttg ccgcatccac
    17881 aaaggctgct actccgcttt tcatatcttg agcacccctt gcatagataa agccttcttt
    17941 ttccacaggc gcaaaagcat tattactcca accctcgcct gcaggcacca catctacatg
    18001 cccaccaaaa gctaaatgct cgccttcatc tttaaatttt ttagtgagta aaaggttttt
    18061 aatgccttct ttttctataa aaaaagcttc aaaatcactc agttccatag cgatgaaatt
    18121 taaagctcca tcatcatttg gcgtaacaga tttaaatttt aaaagttcga ttaaaaattc
    18181 ttttgcattc attttttatc ctaagaaagt tttatataat aaattaagag caaaatactc
    18241 tataattata gctgaaatta tattgattat aaaaacaact tttgcactaa aaacatgact
    18301 atatcttgcc accacaaagg ctaaagcact tacccaaaaa agtatagcca caacaagccc
    18361 taaagtcatc aaataagcat gatcgctgct taaaactaca cttgcagcac taagccaaaa
    18421 tcctatcaca aaaggatttg aaccatttaa aaaagctcct ttaatataac ttttcaaaag
    18481 actttcttta aattctttat gctctaaatt taagctttct ttcttttttc ttagcatcaa
    18541 atacgccata taggttaaaa aacaaaaacc aaaaatcgcc aaagaacgca taaaaatgac
    18601 attgtctaag aaatttaaaa gcccaaattg aagcaaaaaa agataaagca tatctatact
    18661 aaatgctcca agtcctacag ctatggaatt tttaaaagct tttagcgcat aagttaaaat
    18721 caaaatattt acaggtccaa aaggcacact cactccaaag cccaaaaaaa ctccacttaa
    18781 aaaagaatca aacattacca tctttcataa aattttctat atcaagtgcg attttatcaa
    18841 tagcgcttat aatatcttct atatagattt tatcaaaata ccgctctaaa ttcgcatctt
    18901 tttcgtagat atttaaaata cttttttcgc acattgaagc ataacgccct acaggcaaaa
    18961 ccgccccact tgtgcctatg ctgataaaaa gcgaagtttg atttagcaaa gaataaagcg
    19021 tagcataagc aggagcttgc tcttcaaaca tgactatatt gtgtcttaaa tccttgcttt
    19081 tgcattttgg gcattgttta tctatgattt tttcataacc tatattaaaa atttcttcgc
    19141 attttaagca gcgaagttca ggtaaaaagc catgcaaatg tactacatct ttacaccctg
    19201 cacgctctag caaatcatct acattttgcg tgatgacaaa aaggttttta ccccattttt
    19261 cttttaactg tgcgattttt tcatgagcat gatttggctt tacattttga agttgtgccc
    19321 ttcttgcatc gtaaaaatca agtacttttt taggattttt tctaaaacct gttgcagagc
    19381 aaacctccat cacatcgtat tcttcccaaa gtccatcatt atctctaaaa gttttaagcc
    19441 cacttggagc agacaaaccc gctccgctta atatcataat gtttttcatc gctaaacctt
    19501 ataaaattta caaagtttag cgaaaaatgc tttaagaaaa taaatatttt tgcaagattt
    19561 tttctttttc tttttctaaa aattctaatt taagattaag aagatcaatt tgttgttcta
    19621 ctaattcaat gttttgaaca attttttctt gaatttctaa cggtgggagt gggattgtaa
    19681 gattttcata aaaacttata ggaactcttt tgtgtccact tgctccagtc atagcaagag
    19741 ctgctttttc tcttatattt tgttgattta gattatagaa taagaaacta ctatcaagcc
    19801 ctgtttttgc tctaaaaata tgaaattctg tgctaccaaa acctatgtta tttgttagat
    19861 tttttgcgat agcacattta ccattttcca tgcaaggagt aatttttgca atcaaaatat
    19921 cattttctat aaaatatgtg tagccttttc ttacttcgtt taatgaccta tctatcttac
    19981 tttgaatata acccttatct gaaacgctag ccatttctat aaatgagaca agcatatttt
    20041 catcaagttt tgatatttct tttttgctag gattaagttc catatattgt tcattcttta
    20101 aagaaattct cttccagcca tcttttggtg gagttgagag agtttgtaaa agctcttgta
    20161 tagttttaga aaagttttta aaagcattaa aatcttgctt tctttccttg ctttgagttt
    20221 cttcaactaa tacttcagaa tgactgattt gttcttcaat tagcgaaagc aaaagattaa
    20281 aatcaagctt agattctaat ttttgcaaat tttctaaaat agaatttagt tcatattctt
    20341 gattgtcctc tataatacca gatttttgaa gcattgcttt gattagcttt tgatactctt
    20401 ttatactcaa gcttaaagta ttatgctgct cttctatctt ttcacactct gctacgattt
    20461 gtttttgaat ttcaagcggt ggaagtggga ttttaaaact ataaaaaata ttagtatcaa
    20521 actgtggata ctgttgtcct tgtttatata gtttttgtcc gcaaatttct aataaaatat
    20581 acaaaaaatc aaaaataatc ttgcttttat ctttaacact caaaatatga ttatttgctg
    20641 aaacaaattt acctttatgt tttttaatat ttgcatatct tgccactcct aaagtaatta
    20701 cttcaccttc gtttataaat tgtccagctg ttttttcatc tgtccaccat tcgtagtttt
    20761 tagaacttgg taaaagtttt acatttccac tgtttaaatt cattttttcg atttctgtcg
    20821 cactagcttg atttctaatt ttatttaaat cacacacttc ccctaatctc accaactcat
    20881 acttagaatt cttaaaagga tttaactcat ctcttgattt tacgtttaaa cttatagctt
    20941 tattaaattc cactttttca aaatccatca tatcaataag cctcgcttta ctagcatagc
    21001 cttgcaaatc ttttggtata tcgctaagag tttttaaaaa tgctttacaa attaaagtat
    21061 taagcttagt ttcattttgc ggattgcctc tttcaaaaag tgggcttaaa taagggttgt
    21121 acaattcttt taaaccttca tcaccttttc tattactcca ctcataacct aaaaatttct
    21181 tttgttcttt tatatcactt ggagatttta tgattaaaac ttcttgatta agacttagac
    21241 aaaaataaag caatttatcc ttttctattg cttgagtata agctaaaaag gctttatctt
    21301 ctaaatcttg cttatcttta ctttctttat aaattttaga ttctttaagt cttttataat
    21361 cgcttgtttg cctaaatgca ttgcgataat ctttaaaggc ttctagctct gcaagtttag
    21421 aatctaagtt tccatttaaa aaattgctat aaagctcttt atcaaatttt ctaaaatcac
    21481 aatacgcact tagataattt tgataaaagt tttcattgtc ttttaaattt tcagcttcta
    21541 tgcgttcttt aatcaaacta taatcttgag aaataagatg attttcttgt ttaaaagttt
    21601 cttttttgcg taaaaataaa ataatcgtat ttgtccctgt tgctccaaat gtttgattac
    21661 ctagctctac aatggcaata aaatcaaaat tttgaaataa tatttctctt gtatttttat
    21721 aaatagaatc tttatttaaa atagaacttg gtaagataat agcagcttta gcattatcat
    21781 ttaaaatttg atttgctcgc tcacaaaaaa agcattcgat agaattattt gtttctatgt
    21841 ttatatcatc gttaaaaagt ttataggtat tcttagattt atcacttaaa gtttctaaaa
    21901 atccttttac agaataaggc ggatttgcta taagcaaatc aaaactattt gattctattt
    21961 gtggttttgc tttttctcct tctaaattat ttgtatttgc taattcaaaa gaagcaagtg
    22021 catcagcgta taaaatattg atttcatttt gtccatacat tgcacttgat accttagaaa
    22081 ccttacttaa gcgatactct ttttcaatac cataaatatt tttataatgc tctttaagct
    22141 catcttctgt tagataacgc ttaagctcat tggcataggt gtttaaaaaa tgtccagcac
    22201 cacaagcata atcaatcacc cttaaagctt tagagctttt gcttaacatt tcttgaagcg
    22261 gtaaagaata cataataaat tcacaaattt gaataggggt aaaaaactgc ccttcatctt
    22321 gcttcatacc tttttgcaaa aaaagttcaa aaagattgcc taaaaattga tttgtagagt
    22381 tttgggtaag cttgtaattt gcaaaaagct ctactatttc ttttaataca agtgcatttt
    22441 ttaagaataa ttctttatta tgcacttcta aaaatgcaaa atcattattt gaataaaatt
    22501 ttaattcttt gatgtaattt tgcattactt cttttaaagt ttttatcttt aattgcttaa
    22561 agtctttttc tatatcttca ttagatacaa aggtaatttt ctctcctaag aattctttca
    22621 tagcttcttt ataaagccac attaatctat cttgcatatt tgcataagta tctgccatta
    22681 caccaaaata tccaaatttg agattgtttt tattaaaagt ttcatcataa attttgcaaa
    22741 gaaaaatatt tacaagttta tcaaaggcat tttccttgcc tgatatatta tgcttgcgta
    22801 aaatttttgc aaattcgtga tatttacctt cttctttaag ttccttaaga ttatcaaaag
    22861 ttggagtaat ttctaaaatt ttataagcat tgacattttc ttcaaaaata ccttgtttaa
    22921 aatattgcag ttcataactt tctttccaag ttttaaaaag ttctatattg ttattagatt
    22981 ttttataaga attttgtaat tccttttctt ttagatattc ttcgttatcg taagcttgta
    23041 tgatgtaatt tttatattct aacttatcgc taaaatcact tgtataaaga caaagatatt
    23101 ttacaccttt ttcttgctga aaataagaaa aaagctgccc gccatcttct tgcattctat
    23161 tccattcttt tataaattca ctatttttag aatctgtggt tttacattct ataatcaaat
    23221 aaggattgtt ttcattatcc tttactaaaa tatcagcctt accacctttt ttatccctgc
    23281 caagattcca ttttggctct aactctaaat attcagcctt gtaacctttt tctaaaagtc
    23341 tatgcacaca ttcaaaaact acaaaatttt cagggtgtga aaaattagaa gtagttttat
    23401 cgtgaatttt tatttctttt gggtaattaa tactttggtt tttataatct attaaaagag
    23461 tgtaattatt gattgttttt acataatttt catttttatt tttaaagcct aagttttcta
    23521 gaacttgttt taaattatct tttgtaatca tttatttcct tataatctca ccaccttagc
    23581 accaaagcca ccttgattga tcggtgcgtc attaaagccc ttgacacttt tatgagtttt
    23641 caaaaactct cttacagcaa aggcaagctt tcctgttcct ataccatggt aaactaaaac
    23701 ttcatcaaag cctgcaagca aagcatctga aataaattta tcaagccttg aaatagcttc
    23761 atcactccta agcccatgca aatccaagct aacgctaaga ttagtcggtt ttgccacact
    23821 aatgcttgtt tttggactta ttttaggtgt aggagtgctt tttttaagca gttttaaagg
    23881 cacacgaagt ttgatcccat cactttcaac catagcatcg tttttagaaa tgcttatgat
    23941 tttaccctta attttttcat attttacaaa atcccccaca cgcaattctt cgttttgctc
    24001 catacttggc aagatgattt cttttttaag ttcattggtt ttattaagac ttctttgctt
    24061 gtcttttata tctttaagct gtatggtttt tttagcttct tctatggctt tgtgcaattt
    24121 aaattctaaa tttctcaaac tcgtacgaaa ttcttgttca tttttttctt tttgctcttt
    24181 taaagaaagt aaaatttcat cgactttttg ctcttttttc tcaacatttt caagcttagc
    24241 ttttagttct aattcaagat tgatattttt acccacaagc tcttctaaat tttctttatc
    24301 ctcgccataa agctttttag cctcgctaac taaattcggc ggaatctgat aacgcaaagc
    24361 agtttcaaag gcataagatt ttcctatagt accttttaaa aactcatatt ttgggcgtga
    24421 aagctcttca tcatataaag cagcaatgag ttcaacttgc tcattctttg ctaaaagcat
    24481 ggcaaggcgt ttgtggtgcg tggtgatgat gattttaaga ttattagcta tgagttttga
    24541 aattaacaca ctatacaaac aagccgcttc ttcaaaatct gttccaagct ctatttcatc
    24601 gatacctaaa agcaaatttt tcttagaaaa aagcctggaa aagtgcaaca ttcttcctgc
    24661 aaaagttgaa atgtcgtttt taacattttg cggatcttct atgatggcat caaattcttt
    24721 aaaagtacca attttacttt cacttgcttt gatatgcata ggcaaaagat gtttagctaa
    24781 aaatgctgca cttagcatgg attttaaaag catggatttt ccgcctgcat ttacccctgt
    24841 gatgattaaa acttgttttt taaattccaa actcacgctt tttggatttt ttaaagcagg
    24901 atgagcgaaa tttttaagaa ccaaatctgt actttgatca cacaaaacaa attcaaaatc
    24961 ccttttttta gcaagcaaaa ccctagcact ataatgatca aaaagatcaa aggctgtatt
    25021 gataaatttt aaaaaaggta ggttttttgc taaaaaagct gagaaatttt tagcgtattc
    25081 ataataaatt tcttcttttt gatttttgat tttttctata tcattttgca aattttcaac
    25141 acttaaaggc acgatataaa agccaccgcc actacttcta cctatgattt ttgctttaat
    25201 agcgtgatta aacccgcctc ttacaagcaa ggcttcaaga ttgtttataa gatggatttg
    25261 tgtatcgata agataaggca ttaaagcttt tgtatagcaa aatttcttaa actcagctat
    25321 tatgctttca ttttttaatc ttagagcggc attaagattt acaagtcttt catctaaact
    25381 ttcttttaat tctcctttct catcgaaatt caaacaaagc tccaaagccc cgctaacaaa
    25441 ttctatcttt tgtagccaag agcctaaatt tgttcctagt tttatttttt ttaacttttc
    25501 aaaataacga aaaattttta caaattcaaa aatttcatct aaatgtaaaa ttccttgctt
    25561 acttaaatgt actaaggctt tatcaagatt gctaagctct ggcatagtag gaaattccac
    25621 ctcacaaagc tcatgtatgc gtttaaaatg gagattagaa tctccttgca aaaaaatctc
    25681 cttatctctt gcaaaaaggg ctttaaactc ttctaaatag ctgtttaaat caagctttga
    25741 gatcaattct tcttttgtat cattcatcat ttaacctaca atctttaata tctatgatta
    25801 aagaattaaa actttgatta ttatcttttg aaataaaact tcctgtacca aattcataat
    25861 taaaatacgc cttagaaaca ttgatatctt tacataaaat atttttattt tgattaaaag
    25921 ctacgataat atctgttctt aaatgacttt tttgtgtgtt ttcaaattca aaaaataccg
    25981 ctaaaacaat aaaaatcaca agtaaaatac caaaaaaagg tttggttttt ttacctaatt
    26041 tttcacgcaa agcaaaagtg attaaggcta aaattaaaat aattaaaaaa tataaaaaaa
    26101 acctactcat ttttttgcct taatttatta ctgatatctc ctgcgccaaa acctataata
    26161 agcccttctt caaaaacctg ccccttagaa gccaccaaaa atttaccctc tcttttgata
    26221 tcttctacaa ataaagcctt aggaaaaacc gcctttaaat caagttctat aggctcttct
    26281 cctgcagcat aaacaggtaa aattataagc tcatcaacac cttcaaaagc ctttgcaaat
    26341 tcctttaaat ttgcagccaa acgcgtgtag cggtggggtt caaagatagc tgtgattttt
    26401 ttatatccgc ctaatcttgc gtattcttgt gctgcactta aagtcgcttt tatttcggta
    26461 ggatgatgac cataatcatc gattaaaacc aaattttcat cagcatgtaa aatatcaaaa
    26521 cgctttttaa taccttgata atttttaagc ctagttctta tcgtttctat atctaagaaa
    26581 tttaaagccg ctaaaatcgc caaagacgca tcaagggcta aatgatatcc catgccaaaa
    26641 actttaaact cacctaaatc tttcaactca aagcttgtaa aaggtttgaa attttctata
    26701 cacatggtgc agtttttgat atctttactt ggataaagct tgattgactc atttttataa
    26761 tttttcaaaa actcatcttc agcattaatc acgcgaattt tagccgtatc taaaaactgc
    26821 gtataagcat aatggagttt tgaaacttca ttaccataat gatctaaatg ctctgcttct
    26881 gcattagtaa ctatagccaa ataaggattt gaatttaaaa aagaactatc gctctcatca
    26941 gcttcaaaaa caaggttttg actttcctta taaatcatat ttgaaccaaa ttcttttaaa
    27001 atcgctccga tgatcacaga agcatcatca agtaaagaag ctaaaatact tgaagtcgtg
    27061 ctttttccat gtgctcctgc aactgcaaaa acacgcttat cttctaaaat aagaggtaag
    27121 gcttccttgc gtgaaagaca cttaatacct aattctttag cgtgtttaaa ttcaggattt
    27181 tcttctttga tagcagcaga ataaataact aaatctttgt ttaaaatatt gtctttatga
    27241 tgagggatac tgaccttaac cccttctttt tctagttcgt tagtgatttt actttcttta
    27301 agatcacttc cgctaatctt aaaacctttt tcttttaaaa atcttgctaa agcggaaatt
    27361 cctataccgc ctatgccgat aaaatggata ttttgcatca tttaaacctt tatactttaa
    27421 aggctaaatt ttagcacttt tttactaaaa agaaaatata aatcctattt tgaaatgcct
    27481 aaacgctcgg ctaattgata taaatttaac tctctataaa atttatcaaa gtctttagta
    27541 taaacatcaa ggttaaaagc tttattcata tcttttaaag tatcattact ttcaaaataa
    27601 taccctttac cgccactata aatacctttt ttatcaatcc atacagcatc gttaatccca
    27661 aattctaatt tctcatcact tggtcttgct aacatatttc ttccgcctac gcttaaatac
    27721 ttaacattat ttaaacttaa agcataaaga gttggaaaaa tatctttatg agatcctaca
    27781 cgatctttat cataataaat atcatcttgt aaatccttag gaatataaag ataaaaaggt
    27841 acactataag caaaagcttt ttgggaattt aaatctatac tcatttcgcg tactctatga
    27901 tctccagttg ctgctataat gacattatct ttaaaagaac tttgttttac tttatctaga
    27961 aattttccaa attcattgtt tgcataagta taagctttga taatgttatc ttgtttatct
    28021 ttttcataag gaagcatatt aagcaaagtt tgcggaatgt tttgtaattt tggcaaatca
    28081 ttttgtggaa ttttataagg tggatgatta gaaatagtaa gagcaattat aagggtgttg
    28141 tgtggatttt tttgaagtaa gtcataaact tttttatata aaaactcatc agctacccca
    28201 taaccatttt cgctatcttt tgctccatta tactctttca ttaaaatatt ttcatctata
    28261 atctcatcta cccccaaaat actgagataa tttttaatat tttgccaaga tccattacct
    28321 gcacttacaa aaatcacctt atatcctgct ttcttataaa tagcaatagg tgttaaatct
    28381 aaataagttt tctgaaattt acttgtggaa atattagaaa atggacttac aaaaaataag
    28441 tttgcaaaac ttggtatagt tccattacta gaactcaaaa agcgtttgaa taaaaaatct
    28501 tgcttaaaat gtttatctaa cgaacccaaa aaattatgtt ctgtatttgt aaaatcagcc
    28561 aaattaagcc caaaactttc cattaagtta acaaatacac taggatgatt cttttcagct
    28621 tttagattta taggactttg atgcaaataa tcaaaaagtt tttctttaag ttcttgtgct
    28681 tttaaaggtg tgatagcctt caaagctgct tcttctttat attgttttaa agcccaagaa
    28741 aatgccataa ttggatttaa cattgtatca tttacaacac tatattcgct aaaagaataa
    28801 ttttgcacat ttatagccac atgcttaaat ggacccctta aggctataac ataaacaata
    28861 attaatatta aatttaaagc tatcaaggga aataatctta aattaacagg ttttagcttt
    28921 aaatttaata ttttcaaatt taaaaaa
//
LOCUS       DAPIWJ010000008        28011 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.008, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000008 DAPIWJ010000000
VERSION     DAPIWJ010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 28011)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28011)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28011
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.008"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..864
                     /locus_tag="RJ259_000263"
     CDS             <1..864
                     /locus_tag="RJ259_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366005.1"
                     /translation="ERKAENNSYTSDIKKYLGIDKYYTNIDMAETIKQYYNQFNQIVN
                     YAFNDTNKTSFTEADINSMPKGISELSSDKTIGIMPKNYDKLTITNYYNTQEQYNEAE
                     QLGMFGHINIGLQPLNFTPQSMQTQNLDKDTAIDTFNPDMSVYPQNEDGSYSKEALFM
                     SFLKSTGVSPREGSATLNPIAKSYAEAMAKESFDGSLASLDDIMTGKVDFASLLKGYA
                     QEGWLDADIYAMDKGVAWQNTSIGYGGAWFDREFNQVKANGWKASSESINSYVGSIMD
                     RLNNLMGQTRV"
     gene            complement(922..2349)
                     /locus_tag="RJ259_000264"
     CDS             complement(922..2349)
                     /locus_tag="RJ259_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HDV7366006.1"
                     /translation="MLINTLYFINSLFFNFCIAFYLMSALQWYSYKFKRVFFHYHKPL
                     WHLYFLFIPYFLFLAFPLYSLVYFALIHTPILYFWNKGIDKKLVFTSKVKWFFVFVFV
                     YNAIFTILALRFSFLFNLFSLPFALLSLKIYEFFTNLYYKKQAKAKLRANENLKIILI
                     TASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINANLSQDTQIYIAEAGAR
                     LKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLEALNSERLEKAFLHSST
                     QKEEDKLISLYDDKLSLIHSSLEGLEFKVDIENKSYDFKSQILGDFNAQNLCVCILCA
                     HYLGIKLEKIQKQVLNINSVEHRLQVLSREPKFIIDDGFNGNFKGMSTSYKLCKSYKG
                     RKVLVSPGIVEVSEEENIKLAKIINECFDLAIISAQINAEIFKKELKIKTIILKEKSQ
                     LVQTLAKETKHGDLILFSNDAPSFM"
     gene            complement(2350..3069)
                     /locus_tag="RJ259_000265"
     CDS             complement(2350..3069)
                     /locus_tag="RJ259_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDV7366007.1"
                     /translation="MAQTQLSYKNKTYQISYEILGDLSLPQILILHGWGADKKLMKQS
                     FCPFLKDFCQIYMDLAGFGNSSVEEILNTQDYANITELFLKQKKLNVCFFMGHSFGGK
                     VSTLLAKEKDTLILLSSAGILAKKSLKVRFKIRIFKILKLFGLGKFYRYFASKDGANL
                     SPIMYETFKKVVDEDFSEIFAKQKAKSLIFWGKSDEATPLYCGEKMHQFLKNSTFYPL
                     EGDHFFFLKHSAFIAQKIKEI"
     gene            complement(3071..3286)
                     /locus_tag="RJ259_000266"
     CDS             complement(3071..3286)
                     /locus_tag="RJ259_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HDV7366008.1"
                     /translation="MLSFKQDEFYTATEVVRNFSPIMEKLKKSESGKIVILKNNKFEA
                     VMLSMKEFERLQNAMQLLENIYKNQKA"
     gene            complement(3346..4386)
                     /locus_tag="RJ259_000267"
     CDS             complement(3346..4386)
                     /locus_tag="RJ259_000267"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HDV7366009.1"
                     /translation="MKFAILFGGNSYEHEISIVSAVVLKKVINQNLEFIFCDEERRFY
                     HIPSEKMNSKTFSTKAYKKEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDG
                     KIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTILRKNQNSKEKLS
                     FPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI
                     NDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLF
                     KGALIRCDFFILDNEIYLNEINPNPGSLANYLFKDFNTTLNALADQISLEKMIKINYN
                     FLHSINGQKGKL"
     gene            complement(4396..4947)
                     /gene="ruvA"
                     /locus_tag="RJ259_000268"
     CDS             complement(4396..4947)
                     /gene="ruvA"
                     /locus_tag="RJ259_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HDV7366010.1"
                     /translation="MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKIQTQEK
                     HEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKAL
                     SLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLENVSDDKSEALAALLTLGFKQEKII
                     SVLVSAQATGTSELIKEALKKLG"
     gene            complement(4923..6782)
                     /locus_tag="RJ259_000269"
     CDS             complement(4923..6782)
                     /locus_tag="RJ259_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HDV7366011.1"
                     /translation="MALDEKIIAYTENPARELLSVASRTNLSLNELDFSLLAFSTQYR
                     FGDLEWEKISEKELTLFDKDEIFLKNDLQIKQEYKIEIFHGINQSKASQAVKLVANKN
                     LTKIVAQIDFTNLDFHEKLALELLQNIYKKMLKLKFLIGIRIFDFKKKLMSFCNQYKN
                     TPLNKTIQITVAQGIDPIESQDESLILTYKEKTKNYTIDEKRSGIIVVDENEVVLKHV
                     KFKQGKEGKDLNLHTLKVLAANENKVKFSCSSAFKQVEQDGYTEYIALKKGYVVQDGE
                     KFDIANELDFNGVDFKNIGIIRAGLDKNVKINIKFLSEVKDAVNSGVGIECEELNVVG
                     SVGSNTQLNATKMKIEGTTHSKAKIQAKQAYIKTHRGFAEAEILNIDLLEGGTIKAKE
                     VRIKKSLGGNIQADKIYIENLESNNSCVFFENTTIERINGDNNKFHAKIKTLDKNYDE
                     EFAILGEQISKLNHKINKIRQYILSSKNGILSVEKKITELKNQGQNVPVQYEKALKDF
                     SLQNLELNKLQNEEKELLERKKSLQLELINLQKMLFEATFINKSGKWTDMNEIKFSLL
                     EPKEDIFCSSFVNESAKFIGIKKVIQNNQESIEIHKKLDYEEKDIAWLSASKE"
     gene            6886..8337
                     /gene="murJ"
                     /locus_tag="RJ259_000270"
     CDS             6886..8337
                     /gene="murJ"
                     /locus_tag="RJ259_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HDV7366012.1"
                     /translation="MKSLVFKNFIINALGILFSRILGLARDVLIALFLGAGLYSDIFF
                     VALKMPAFFRRIFAEGAFGQSFLPNFVKAKKKGAFCVSVMMQFSLIVFLFCLLVSFFS
                     SFFTKLFAFGFNADTIALAAPLVAINFWYLFFIFLVTFLGAILNYRQKFFITSFSAAL
                     FNLSIVIAAFFVDKNAPQNTLYYFSYATVLSGVAQLILHLLVLKNNPVIRAMTLSIKF
                     KKTKAKLQGFYGNFFHGVLGSSATQFSSLLDTTIASFLMSGSISYLYYANRVFQLPLA
                     LFAIALTQVSFPKILKHLKSDQENLALKFMQRALALLSILLIASSIVGSVFALEISKL
                     LFERGNFTHEDSVITAYVLIAYLIGLLPFGLQKLFSLWLYAKFKQKTAAWIAVKSLII
                     SALCSMAFIFLIKDESLKVIAVALSSSISAFYLLGANIKEFGFKKFFALISIKICLLV
                     IVALIVFTILLILIKPYILSFFIGIFTSFKGVF"
     gene            8337..9725
                     /locus_tag="RJ259_000271"
     CDS             8337..9725
                     /locus_tag="RJ259_000271"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HDV7366013.1"
                     /translation="MRLLDSVTKEKIKLDKKDISIYLCGPTVYDDAHLGHARSSVCFD
                     LLRRVLLAQGNRVKFARNYTDIDDKILKKMAQSGQTLEEITEFYIKSYEEDMRVLNVL
                     DPDFKPRATHYITAMLDLIKKLAKDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENIS
                     RLSNEVQKRNESDFVLWKFDENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGI
                     DLLFPHHENEAAQCRCGCKRKLANIWLHNGFVKIDGEKMSKSLNNSFFIKDALKEFMG
                     EALRFYLLSSHYRSHFNYSLSDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIGIKS
                     EIAKQILEILNDDLNVSKALALLDDFISSANLELDKESKNKILKQNIKEALSELAKIF
                     GFGFMDATLYFQWGVSKEEREEIEKLILERTEAKKNKDFNTADAIREQLNSKKITLLD
                     TPNGTIWEKINA"
     gene            9718..11460
                     /locus_tag="RJ259_000272"
     CDS             9718..11460
                     /locus_tag="RJ259_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7366014.1"
                     /translation="MHNEMNLKEVLIRFKPFYKRYWKQFAIAIFGMILASGGTAGSFY
                     ALEPILNYIFVEKNEALLYTVPFLLVLMYFFKNLGTYLQSFYVSFIGTDMLRVLRARV
                     LKNVLRLDMDFFKRYRSGELVSRCTNDINALQSIVSNIIPDFFRELLTAIGLLAVVLY
                     QSPTLAFFALVILPLAIFPLVWFAKKLKKYARNIQETNSDLLSYLGEIFSNIELIKAN
                     DNEKKESDKFAKHNDTLCKLNLKSARIDALTSPLMDMMGSVGVAVVIIVGGREVINGS
                     MSVGSFISFVSALFAIYTPLKRLSSLYGKLQGAVAASERTFYLLDLEPQIKGGSKELK
                     NIEKISFENVEFAYENPHKSVLKGVNFDFVKGQMLALVGTSGGGKSSIINLLMYFYEK
                     QKGKILLNQEDISTFTIESLHAKIGLVTQNIYLFNDSFAANIAYSEELEEEKVIQALK
                     LANAYEFVKEMGGIWAEVKEHGKNLSGGQKQRIAIARALYKNPDVLIFDEATSALDNE
                     SEKAIVKTIENLKQDRLILVVAHRLSTIENADKIVVLDKGKVLAIGKDEELLQTCSLY
                     QKFKSKEKTKPSFS"
     gene            11492..12550
                     /locus_tag="RJ259_000273"
     CDS             11492..12550
                     /locus_tag="RJ259_000273"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HDV7366015.1"
                     /translation="MAYEMIKLLLFKLNPEHAHALVEYSLRALSASFPGALSFLAHKY
                     IVDDESLRQNLLGLDFNNPVGLAGGFDKNATMIRPLSALGFGFLEVGTFTPKPQEGNE
                     KPRLFRLVKQESIQNAMGFNNEGAEKIALRLAKTYPFVLPLGVNIGKNKITPNDKALE
                     DYFTLFRDFKDLCDYFIVNISSPNTKNLRELQNDDFLNTLLEEAKKITSKPILIKIAP
                     DMKIDDALNLCENAIKKGADGFILANTSVDYSLLDNNRTFGGISGRLITEKSGIFFKE
                     VTKILFGKTLLIASGGIDSADIAYERIKNGANLVQVYTALIFKGPSLVKNINQNLIEL
                     LRKDGFLHISEAVGVNLK"
     gene            12547..13797
                     /locus_tag="RJ259_000274"
     CDS             12547..13797
                     /locus_tag="RJ259_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HDV7366016.1"
                     /translation="MIAYEKIQLKNKLEVYALPVNKNSDVISVDIFYKVGSRNEIMGK
                     SGIAHMLEHLNFKSTKNLKAGEFDEIVKGFGGVDNASTGFDYTHYYIKCAKKNLDKAL
                     ELFAELMANLNLKDEEFQPERAVVLEERRWRTDNNPLGYLYFRLFNHAFMYHPYHWTP
                     IGFFKDIENWSIEDIKEFHSIYYQPKNAILLVSGDIESKEVFELSKKHFEKIKNTKTI
                     PKIHTKEPKQDGVKRIYLHKNSDTELLALAYKIPNFKHKDIPALNALSELLGSGKSSL
                     MSEILIDKLNLINDYYAYVNDCIDENLFIFICNCNPNVNAEKVEKELLKIIDKLKMGK
                     ISQKDLQRVKNNVKSDFIFSLNNASAVANIYGSYLARGDINPLLNYEKDIQNLELKDL
                     ISCAKKYFIQENSTTVILRKDSNG"
     gene            13790..14686
                     /locus_tag="RJ259_000275"
     CDS             13790..14686
                     /locus_tag="RJ259_000275"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HDV7366017.1"
                     /translation="MDKNIIIGAMTALITPFKNGKVDEQSYARLIKRQIENGIDAVVP
                     VGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGAD
                     GILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCE
                     NIYGVKEASGNIDKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMI
                     SALTHFALDENYKEAKKINDELYNINKILFCESNPIPIKTAMYLAGLIESLEFRLPLC
                     SPSKENFAKIEEVMKKYKIKGF"
     gene            14686..15465
                     /locus_tag="RJ259_000276"
     CDS             14686..15465
                     /locus_tag="RJ259_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HDV7366018.1"
                     /translation="MNTEFQGKTLVISGGTRGIGKAIVYEFAKVGANIAFTYNSNAQI
                     ADEMVQDLEKNYKIKARAYEFNILEPETYKELFEKIDVDFDRVDYFISNAIISGRAVV
                     GGYTKFMKLKPKGINNIFTATVNAFVVGAQEAAKRMEKVGGGSIISISSTGNLVYIEN
                     YSGHGTAKAAVEAMARYAATELGEKNIRVNVVSGGPIETDALRAFTNYEEVKQATINL
                     SPLNRMGQPEDLAGACLFLCSSKASWVTGHTFIVDGGTTFK"
     gene            complement(15506..15811)
                     /locus_tag="RJ259_000277"
     CDS             complement(15506..15811)
                     /locus_tag="RJ259_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366019.1"
                     /translation="MELDQILLYAFIFLNLFALFGLFLGNKKKNQFNDKKFYKICPCK
                     KMAENGSLSTICIYSAVGGFFYSVLSIGFVGFGNWTLNFIFLLALLSVFLGWKLKLD"
     gene            complement(15823..16419)
                     /locus_tag="RJ259_000278"
     CDS             complement(15823..16419)
                     /locus_tag="RJ259_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDV7366020.1"
                     /translation="MQIIKQACGVYETNCYILFTPKGEFIIDPGTDALLFIKKHVKNP
                     LAILNTHGHYDHIWDNAKVKKEYNIPIYIHKNDAFMLHDDFNQGYDSSDADFLVDNED
                     ILNICGVDFKFHFLPGHTPGCTMIEIVGKNIMFSGDFLFYRSIGRWDFPYSDANLMKQ
                     SLEKVMTYKEDFKLLPGHGQETTLKEEQVHLPSWLRYF"
     gene            16493..17233
                     /locus_tag="RJ259_000279"
     CDS             16493..17233
                     /locus_tag="RJ259_000279"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HDV7366021.1"
                     /translation="MDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCK
                     RALKENVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLV
                     SLGNFAARIRMSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKS
                     EIYALAKYLNLHENFIKKAPSADLWENQSDEADLGFSYTKIDEGLKALETNDEKLLRI
                     LDPSLIAMLKNRMQKNAFKGKMPEILEI"
     gene            17237..18163
                     /locus_tag="RJ259_000280"
     CDS             17237..18163
                     /locus_tag="RJ259_000280"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HDV7366022.1"
                     /translation="MNEEKNYELWLDNYFFKPNFWQKCLAFILLPLSVLYAFFAILNT
                     FFRKKIVFKKPVISVGNLSFGGNGKTPLCKAIAREFDGVFIVLRGYKRKSKGLFVVKN
                     QNEILCTLTQSGDEAMEYAFEENIKGVIVSEDRVKGIEKAFELGAKIVVLDDAFSKFH
                     IKKFDILLESKIKPYFNFTLPSGAYRLPKFYEKRADFIALEGRDFVRYSFVKENPKAV
                     LVTAIAKPFRLYEHFIKARACYFFKDHYEFKKEELENLLKKHNCDTLMLTFKDFVKVK
                     DFGFKCQIIELNIELKDSLREKIKTYIKEFEQ"
     gene            18160..19572
                     /locus_tag="RJ259_000281"
     CDS             18160..19572
                     /locus_tag="RJ259_000281"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HDV7366023.1"
                     /translation="MKLVESRNVNNVSSFKEALINPNAPEGGLYSPLNLPIFEGEKYA
                     NLSYKDFALKLIESFGFGEEELFKKALKSYESFDDKNTPISLQKISEKTYINELWHGP
                     TRAFKDMALQPFGVLLSEFSKDKNILIICATSGDTGPATLKSFENAKNVKVACMYPKG
                     GTSGVQELQMRALDKDNLKVFAIDEDFDAAQRTLKELLFSKDFQNEIKALNYELCAAN
                     SVNFGRILFQIIYHYYASLKLFNEFLEEVQIIVPSGNFGNALGAFYAKKMGAKISKIK
                     IASNANNILSEFFNQGVYDLREKSLKKTISPAMDILISSNIERLLFAKFKDKRTKELM
                     NLLKNERYFKLEKEELQSLQEDFEADFCTDEECMQFIKQSKILIDPHTATCFKMLDPL
                     KPSIITSTAEWTKFTPSMIKALYDRDSKNEKEDLKFIAKEFNVQVKDEILALFDLKNS
                     DEKVFEARNIKKEILDWMQK"
     gene            19569..20288
                     /gene="kdsB"
                     /locus_tag="RJ259_000282"
     CDS             19569..20288
                     /gene="kdsB"
                     /locus_tag="RJ259_000282"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HDV7366024.1"
                     /translation="MIIIPARLKSSRFHEKILCDIGGVPMFVATARRVSSVDEVCIAL
                     DDEKVLSIAKEYGLNAVLTSKDHESGTDRINEACKKLALKDDEIIINVQADEPFIECE
                     NLLKFKEFASFCLDKKAFMASCYKKITQEEAMDPNLVKVLCDKEGYALYFSRAKIPYE
                     RENYEESFKGHLGIYAYSVKALREFCSLSSSALERAEKLEQLRAIENGKKIKMLEIST
                     TSMGIDTKEDYERALKIYLEK"
     gene            20393..21148
                     /locus_tag="RJ259_000283"
     CDS             20393..21148
                     /locus_tag="RJ259_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlgG"
                     /protein_id="HDV7366025.1"
                     /translation="MITQTMQSKESKESKENSKISFANAFLKQNASKLNEIQNANSQT
                     LARSEALNSTNTTNTSNNTNFSISSKTSSPNYDISSEFKNSIYTLKYKQVDISNTSTN
                     TAYGYSVDKDGYMGSDFNKAAGLPEDFKIHKSTLDEIKKAAENDPVVSSTKEYLGVSS
                     YYSNIDIANTIKQYYNLFSNALGQSFPNDKTSFSEADINSMPSGYGVSGTQWMDFNEP
                     SNRMNITGLKDFSNSLISNVYKTPEQAKEADEI"
     gene            21164..21688
                     /locus_tag="RJ259_000284"
     CDS             21164..21688
                     /locus_tag="RJ259_000284"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366026.1"
                     /translation="MIKGLSSETLGLSLEEIKNVSRGEDWQFNPDMSVYPQNEDGSYS
                     KETLFMSFLKAQGGQPVESLKTTLNPKLEAYKRAMAKESFSGPAINIDSIMTGKSDFK
                     SFFRYWAERGIEGDLYMYENNISKESAMGNWALDAEIKQALANGWKAKPSTIDSYADS
                     IMDRLNNLLGQTRV"
     gene            21783..22553
                     /locus_tag="RJ259_000285"
     CDS             21783..22553
                     /locus_tag="RJ259_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HDV7366027.1"
                     /translation="MKKIILIFISFFALNLSAKDLVVGMELGYPPFEMSDKTGKASGI
                     SVDFLEAFAKKNGYKLVVKNIAWDGLIPALKTAKIDLIMSSMTITDKRKKVVDFSIPY
                     AKANLAILTPLNSDITNIKDLDKKGKVLALKRGSTGHLYAVKNLKNATINLFDKENAA
                     ILEVIQGKADGFFYDQLTIYRTWQKHQDTTRAILAPFQENPEFWGIAVRKGDEALKDK
                     LDNFIDESRKNGFLDFLGNKYLKDIKEVFKQNNITFFL"
     gene            22646..22873
                     /locus_tag="RJ259_000286"
     CDS             22646..22873
                     /locus_tag="RJ259_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7366028.1"
                     /translation="MKKVAFFLLFLFLSCTVLNAAREYCKYAYQEDRAIPLILNYGIR
                     LGVVGAGVANAPAPGGSTYNSKIDMMAARCH"
     gene            22899..23123
                     /locus_tag="RJ259_000287"
     CDS             22899..23123
                     /locus_tag="RJ259_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366029.1"
                     /translation="MLEFIFTLILDFTFYSIKTLEKVFLGRTALVILFVVFIALFCVK
                     GLFLYILLALELFLLLYLFLGILFLRFYKS"
     gene            complement(23120..23854)
                     /gene="fliP"
                     /locus_tag="RJ259_000288"
     CDS             complement(23120..23854)
                     /gene="fliP"
                     /locus_tag="RJ259_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344227.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HDV7366030.1"
                     /translation="MKKILLFLLLSMSLFAAEATIPTVNLSLSAPNTPNQLVTTLNIV
                     IVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEP
                     VATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKT
                     IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISL
                     PFKLLIFVLVDGWNLLVQRLVESFVT"
     gene            23997..25286
                     /gene="glmU"
                     /locus_tag="RJ259_000289"
     CDS             23997..25286
                     /gene="glmU"
                     /locus_tag="RJ259_000289"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HDV7366031.1"
                     /translation="MKTSILILAAGLGTRMKSQKPKVLQELCQKSMILHILKKAFALS
                     DDVSVVLSHQKERVEKEILEYFPKTQILEQDLQNYPGTAGALSGFEPKNERVLILCGD
                     MPLVEQTSLEALLGNNAKLNLAVFKARDPKSYGRVVIKNDSVEKIVEFKDANTQEKEI
                     NTCNAGVYVIDSRLLKELLPLIDNNNAAKEYYLTDIVKLAKEKDVMIKAVFVDEDEFM
                     GINDKFELSIAENFMQKKIKKYWMQQGVIFHLPQSTFIGVDVEFVGECEVYENVRIEG
                     KSKIINSIIKSSSVIENSIVENSDVGPLAHLRPNCELKNTHIGNFVECKNAKLNTVKA
                     GHLSYLGDCEIDSGTNIGCGTITCNYDGVKKHKTIIGKNVFVGSDTQFIAPVKIEDEV
                     IIAAGSTVSINVEKGALFINRAGHKMIKDYYYKKFQK"
     gene            25283..26437
                     /gene="coaBC"
                     /locus_tag="RJ259_000290"
     CDS             25283..26437
                     /gene="coaBC"
                     /locus_tag="RJ259_000290"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HDV7366032.1"
                     /translation="MKTILLAISGSIAFYKSYELISLFKKEGFRVKVLLSNGLLKFAS
                     KMSFEALVDEVLCEENESWQNSNNHIAFSKDVDLVLFTPASVNSINKLAFGIADNLFI
                     QTLIAANKPLIIAPAANTNMFHHFSTQNSLKILKENKALIIEPICKVLACKDEGVGAL
                     AEVKDIFNITKRELLKEKFWCNKSVVITGGGTRERIDDVRCVSNFSSGKMAKAIADAF
                     YFLGARVKLLSSVEFDTPYELCKFESSKDLKELLDKNLSHDFLIMTAAVSDFIPQSVK
                     GKIKKNEHLQGLNLHLSLNEDLLKTCKFQGKKIGFKMEFDSQNALENAKKSLKDKQLD
                     MVCLNIIDQKNYFGSDQNELYFITLNNENKSTLQSKEKLAFELVKWCEKL"
     gene            26434..27051
                     /locus_tag="RJ259_000291"
     CDS             26434..27051
                     /locus_tag="RJ259_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366033.1"
                     /translation="MSMINSTLPIQMKVLAKSGYGHYTLLLNHKKIQTKSMIELEIGA
                     EYLAELYMQNGGVIQFKHLSKRPNFKPFEEGLALIIAILEDKISYKKFIIQNLLDCKD
                     IERYQILKEMLFASFENIYHIPFNFENKSCLFQMRKRAKYLEIYLYFSVFGALKILID
                     SQGISVFTPFAKVQKFLNEHLDFNVSQENKIEPLFVFKRLFDFKG"
     gene            27055..27723
                     /gene="uppS"
                     /locus_tag="RJ259_000292"
     CDS             27055..27723
                     /gene="uppS"
                     /locus_tag="RJ259_000292"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HDV7366034.1"
                     /translation="MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCM
                     EENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRL
                     EDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEKKLELNEENLTQNL
                     DLPLDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRER
                     TFGK"
     gene            27720..>28011
                     /locus_tag="RJ259_000293"
     CDS             27720..>28011
                     /locus_tag="RJ259_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HDV7366035.1"
                     /translation="MIFFIIILGACLGSFCTSLASRIIEKKLFFISRSFCFSCDTKLK
                     YYEIIPIFSYIFLKAKCQTCKCHLSISLLINEILGAILLILVYSLSQNFYDFL"
BASE COUNT         9783 a         3534 c         4849 g         9845 t
ORIGIN      
        1 gagaggaagg ctgaaaataa ctcttatact tcagatataa aaaaatattt aggtatagat
       61 aaatattata caaacataga tatggctgaa accataaaac aatattataa tcaatttaat
      121 caaattgtta attatgcttt taatgatacc aataaaacaa gtttcactga agcagatata
      181 aattctatgc ctaagggaat tagtgaatta tcatctgata aaactatagg tattatgccg
      241 aaaaattatg acaagctaac aataacaaac tattataata cacaagagca atataatgaa
      301 gcagaacaat taggaatgtt tggacatatt aatataggct tacaaccatt aaatttcact
      361 ccgcaaagta tgcaaactca aaatttagat aaagacactg caatagatac ttttaatcct
      421 gatatgtcag tttatccaca aaatgaagat ggaagttatt ctaaagaagc tttgtttatg
      481 agttttttaa aatcaacggg tgtatcgcca agagaaggta gtgcaacatt aaatcctata
      541 gctaagtctt atgctgaagc tatggctaaa gaaagctttg atggctcttt agcttcttta
      601 gatgacatta tgacaggtaa agttgatttt gcaagtttgt taaaaggcta tgcacaagag
      661 ggttggcttg atgcagatat atatgcaatg gataaagggg ttgcttggca aaatacaagc
      721 ataggttatg gtggagcttg gtttgataga gaatttaatc aagtaaaagc taatggttgg
      781 aaagcaagca gtgaaagtat caattcttat gttggatcta taatggatag attaaataat
      841 cttatggggc aaactagggt ttaggaagta tttgcacgaa gtcaaattaa aaatgatgac
      901 atttgcaaat acttatgcga atcacataaa gctaggtgca tcgtttgaaa agagtatcaa
      961 atctccgtgt tttgtttctt tagctagagt ttgaactagt tgactctttt ctttaagtat
     1021 aatggttttt atttttaact cttttttgaa aatttcagca ttgatttgtg cactaatgat
     1081 agcaagatca aaacactcat tgatgatttt ggcaagtttt atattttctt cttcgcttac
     1141 ttctactata ccaggactta ctaaaacttt gcgtccttta tagcttttac aaagtttata
     1201 gcttgtgctc atacctttaa aatttccatt aaaaccatca tctatgataa atttaggctc
     1261 tcttgaaagc acttgcaagc gatgttctac ggaatttata tttaaaactt gcttttgaat
     1321 tttttctagt tttatgccaa gataatgagc acaaagtata caaacacaaa gattttgcgc
     1381 attaaaatcc cctaaaattt gacttttaaa atcataggat ttattttcta tatcgacttt
     1441 aaattctaaa ccttcaagac ttgaatgaat aagacttaat ttatcatcat aaaggctgat
     1501 gagtttatct tcttcttttt gggtgctaga gtgtaaaaaa gccttttcta gtctttcgga
     1561 atttaaggct tcaagtttgg ttgagcggat attttcaaca cttttaaaat actctaaatg
     1621 tgcattgcct atctctccta ctatgctgat ttgaggttgt aaaaaatgcg tgatttcatc
     1681 gatatcgcct ttaagtctag cgcctgcttc agctatgtaa atttgagtat cttgacttaa
     1741 attagcattg atatcagcaa ctatacctag taaggtattg acagagcgtg gtgttttgta
     1801 gcttttaaag tcatctttta aaagttcgta taaaaaattt ttaatacttg tttttccaaa
     1861 acttgcggta atgagtatga tttttaaatt ttcattggct cttagtttgg ctttggcttg
     1921 ttttttataa tataaatttg taaaaaactc ataaatttta agactcaata aagcaaaagg
     1981 aagactaaaa agattaaaaa gaaaagaaaa acgcaaagca aggatggtaa aaatagcatt
     2041 ataaacaaaa acaaaaacaa aaaaccattt aaccttactt gtaaaaacaa gctttttatc
     2101 tatgccttta ttccaaaaat acaaaatcgg agtatggatc aatgcaaaat ataccaaaga
     2161 gtataaagga aaagctaaga ataaaaaata aggaataaat aaaaaataca aatgccacaa
     2221 aggtttatga taatgaaaaa acacgcgttt aaatttataa gaataccatt gtaaagcact
     2281 cataagataa aaagctatac aaaaattaaa aaataaagaa ttgataaaat aaagagtatt
     2341 gataagcatt taaatttcct tgattttttg agctatgaaa gcagagtgtt ttaaaaagaa
     2401 aaaatgatcc ccctctaaag gataaaaagt actatttttt aaaaattgat gcattttttc
     2461 accacaatac aaaggcgtag cttcatcgct ttttccccaa aaaatcaagc ttttagcctt
     2521 ttgcttggca aaaatttcac taaaatcctc atcaacaacc tttttaaagg tttcatacat
     2581 tataggacta agatttgctc catctttact agcaaaatag cgataaaatt ttcccaaacc
     2641 aaagagtttt aaaattttaa aaatacggat tttaaaacgc acttttaggg attttttagc
     2701 caaaattcct gcacttgaaa gtaagattag ggtgtctttt tcttttgcga gtagggtact
     2761 tacttttcca ccaaaagaat gccccatgaa aaaacagaca ttgagttttt tttgttttaa
     2821 aaaaagttct gtgatattgg cataatcttg agtgtttaaa atttcttcca cgcttgaatt
     2881 tccaaaacct gctaaatcca tataaatttg acaaaaatct ttcaaaaaag gacaaaaact
     2941 ttgtttcata agttttttat cagctcccca gccgtgtaag ataagtattt gcggtaagga
     3001 aagatcacct aaaatttcat aagaaatttg ataagttttg tttttataag aaagttgagt
     3061 ttgagccatt ttaagccttt tgatttttgt agatattttc taaaagttgc atggcatttt
     3121 gtaagcgttc aaattctttc atactaagca ttacagcttc aaatttgtta ttttttaaaa
     3181 taactatttt tccactttcg ctttttttga gtttttccat aatggggcta aaatttctta
     3241 ccacttcggt ggcagtgtaa aattcatctt gtttaaaaga gagcattttt cttcctaaaa
     3301 tacgctaaat tttatgtata atttagcgca ttttgactta aaagcttata attttccttt
     3361 ttgtccgtta atggagtgaa ggaagttgta attgattttt atcatttttt caagtgaaat
     3421 ttgatcagct aaagcgttta aagtggtatt aaaatcttta aaaagataat tagccaaaga
     3481 accagggttt gggttgattt catttaaata tatttcatta tccagtataa aaaaatcaca
     3541 gcgtattaaa gcacctttaa acaaaggatt gtagatcttt ttaaagctat ctttgagttt
     3601 ttcttttaat tcttcgctta aatctgcttc tataagttca ttgtgtcctg aaaagctaag
     3661 atatttttgt tcaaagtcta aaaattcttt tttctttggc tcttctataa tggaaaaaac
     3721 aaactcatca ttgatcatac atcctgcaag attgtattct ttgatattgt ttttaaattc
     3781 ttctactaca agatcattgt caaattcaaa acctacatct ttggcgtatt ctaaatcttt
     3841 ttcatctttt actatactaa tacctatact acttccaagt cttgcaggtt tgataatgca
     3901 aggaaaacta agcttttctt tagagttttg attttttctt agtatggtat aatcaagtgt
     3961 ttttactcca acgcttttgg cataaagttt ggtaagttct ttgttaaaag ataatacact
     4021 agcttcaagc ctaggtccta taaatttaat agaataaaac tcaaataaag ccgcaatttt
     4081 tccatcttct ccatctctac catggataag attgatcacg cattcgcact ctagtttatt
     4141 ttcttttaaa aagcctttgc taaaaaaacc tccttgtttg atgaagagtt ctttttcttt
     4201 tttataagct ttggtgctaa aagttttaga attcattttt tcacttggga tatgataaaa
     4261 tcttctttct tcatcacaaa aaataaattc taaattttga ttgataactt ttttaagcac
     4321 tacagcactt actatactaa tctcatgttc ataagaattt ccgccaaaaa gtattgcaaa
     4381 tttcatttta ttcctttatc ctagtttttt aagagcttct ttgatgagtt cgcttgtgcc
     4441 tgttgcttga gcacttacta aaacacttat gattttttct tgtttaaagc ctagagtaag
     4501 aagtgcggct aaggcttcgc ttttatcatc gcttacattt tcaagtttgg tttttgtgtc
     4561 agaaagttct actataatgc gttttgcact ttttggacct atgccaggta cttttttaag
     4621 cacgctttca tcgcccaaac ttaacgcttt gtaaaaagaa tttacatcaa gactagagca
     4681 taccgccata gcagtatttg cacccactcc attgactttt aaaagcattt caaacatttt
     4741 ttgttcatct ttatccaaga agccataaaa tttattagaa tcttctttga tgatttgagt
     4801 gataaaaaac tcatgctttt cttgagtttg aattttagca gaacaaaaaa gagaaataaa
     4861 tatcccatag cttaaaccac tagcacattt aacaatgata aaagtaggtt ctttttttgt
     4921 gattattcct tcgatgccga caaccatgct atatcctttt cttcataatc taatttttta
     4981 tgtatttcta tactttcttg gttgttttgt atgacttttt taatgcctat aaatttagca
     5041 ctttcattaa caaatgaaga gcaaaaaata tcttctttag gctctagaag tgaaaatttg
     5101 atttcattca tatcagtcca tttgccgctt ttatttataa aagttgcttc aaaaagcatt
     5161 ttttgcaaat tgattaattc taattgcaaa gattttttgc gttcaagaag ttctttttct
     5221 tcattttgta gtttatttaa ttcaagattt tgtaaagaga aatcttttag ggctttttcg
     5281 tattgtacag gaacattttg accttgattt ttaagttctg ttatcttttt ttcaacgctt
     5341 aaaattccat ttttgcttga taaaatgtat tgtcttattt tatttatttt atgatttaac
     5401 ttagaaattt gctctcctaa aatcgcaaat tcttcatcat aatttttatc aagagtttta
     5461 attttagcat gaaatttatt gttatccccg ttaatgcgtt ctattgtggt gttttcaaaa
     5521 aacacacaag aattattact ttctaaattt tctatataga ttttatcagc ttgtatattt
     5581 ccgcctaaac tttttttaat tctcacttct ttggctttga ttgttccacc ttcgagcaaa
     5641 tctatattta aaatttcggc ttccgcaaat cctctatgag tttttatata ggcttgtttg
     5701 gcttgaattt tggctttaga gtgcgtagtg ccttcaattt tcattttggt ggcattaagt
     5761 tgagtgttgc ttcctacgct tccgactaca tttaattctt cacattctat cccaacgcca
     5821 gaatttacag catcttttac ttctgaaaga aattttatat tgattttgac atttttgtct
     5881 agtccagctc ttataatccc tatattttta aaatctaccc cattaaaatc tagttcattg
     5941 gcgatatcaa atttttcacc atcttgtact acataacctt tttttaaggc tatatattct
     6001 gtgtatccat cttgctctac ttgtttaaaa gccgaagaac aagaaaattt aactttattt
     6061 tcatttgcag ctaaaacttt taaggtgtgt aaatttaagt cttttccttc tttaccttgt
     6121 ttaaatttga cgtgttttaa aacaacttca ttttcatcaa caacaataat acctgagcgt
     6181 ttttcatcga tagtgtagtt tttggttttt tctttataag tcaagatcag agattcatct
     6241 tgactttcta taggatcaat accttgtgca acggtgattt gtatagtttt atttaaaggg
     6301 gtgtttttat attggttgca aaaagacatt aattttttct taaaatcaaa aatgcggata
     6361 cctattaaaa atttaagttt caacatcttt ttataaatat tttgcaaaag ttctagtgct
     6421 agtttttcat gaaagtctaa atttgtaaaa tcaatttgag caactatttt ggttaaattt
     6481 ttatttgcaa ctagtttgac tgcttgagat gctttgcttt ggtttatacc gtggaaaatt
     6541 tctattttgt attcttgctt gatttgaaga tcatttttta aaaaaatttc atctttatca
     6601 aaaagagtta attctttttc agagattttt tcccattcta aatctccaaa acgatattgt
     6661 gtagaaaatg ccaataaact aaaatcaagc tcatttaagc taaggtttgt tcgtgaagct
     6721 acgcttaaaa gctctcgagc tggattttct gtataggcaa taattttttc atccaaagcc
     6781 aaaactttcc ccttgtaaaa aattaagaat gtaattatag tcaattttta atcaatttta
     6841 gttaaaatag ttctctttat attttgaaat ttatgaaaaa atttaatgaa gagtttagta
     6901 tttaaaaatt ttattatcaa tgctttagga attttatttt caagaatttt agggcttgct
     6961 agagatgttt taatagcgct ttttttagga gcagggcttt atagtgatat tttttttgtg
     7021 gctttaaaaa tgcctgcttt ttttagaaga atttttgcag aaggggcttt tggacaaagt
     7081 tttttgccta attttgtaaa agcgaaaaaa aagggagctt tttgcgttag tgtaatgatg
     7141 caatttagcc ttatagtttt tttattttgt cttttggtaa gttttttttc ctcttttttt
     7201 actaagcttt ttgcttttgg gtttaacgca gatactatag ctttagcggc tcctttggtg
     7261 gcgattaatt tttggtattt gttttttatt tttttagtta cttttttagg agctatttta
     7321 aattatagac aaaaattttt cattacctct ttttctgcgg cattatttaa cttaagtatt
     7381 gttatagctg ccttttttgt ggataaaaat gcaccgcaaa atacacttta ttatttttct
     7441 tatgcaacgg ttttaagtgg ggtggcacag cttattttac atttgcttgt tttaaaaaac
     7501 aatcctgtaa tacgtgctat gactttaagt ataaaattta aaaaaaccaa ggcgaaatta
     7561 caaggttttt atggcaattt ttttcatgga gttttaggtt cttctgcgac tcaatttagc
     7621 tcattgcttg atacaactat agctagtttt ttaatgagcg ggagtatttc ttatctttat
     7681 tatgcaaatc gtgtcttcca actccccctg gcactttttg ctattgcttt aactcaagtt
     7741 tcttttccaa aaattttaaa acatttaaaa agtgatcaag aaaatttagc cttaaaattt
     7801 atgcaaagag cattagcgct tttaagcatt ttgcttattg cttctagtat tgtaggttct
     7861 gtgtttgctt tggaaatttc aaagctttta tttgaaagag gaaatttcac tcacgaagat
     7921 agtgtgatta cggcttatgt tttgattgct tatcttatag ggcttttacc ttttggtttg
     7981 caaaagcttt tttctttgtg gctttatgca aaatttaaac aaaaaacagc agcttggatc
     8041 gcggtaaaat ctttaattat cagtgcttta tgttctatgg cttttatatt tttgattaaa
     8101 gatgaaagtt taaaggttat tgcagtagca ctttcaagct ctattagtgc tttttatttg
     8161 cttggagcta atatcaaaga atttggtttt aagaaatttt ttgctttaat atctattaaa
     8221 atttgcttat tggttatagt tgctttgatt gtttttacga tcttacttat tttgattaaa
     8281 ccttatattt taagtttttt tataggaatt tttacaagtt ttaaaggagt tttttaatga
     8341 gattattaga tagtgtaaca aaagagaaaa taaaacttga taaaaaagat attagtattt
     8401 atttatgcgg acctacggtt tatgatgatg cacatttagg acatgcaaga agtagtgttt
     8461 gttttgatct tttgcgtagg gttttacttg ctcaaggcaa tagggtaaaa tttgctagaa
     8521 attatacaga tattgatgat aagattttga aaaaaatggc tcaaagtggt caaactttag
     8581 aggaaattac ggaattttat atcaaaagtt atgaagagga tatgagggtt ttaaatgtat
     8641 tagatcctga ttttaaacct cgtgcaacgc attatataac agctatgctt gatttgatta
     8701 aaaagcttgc taaggatggg tttgtttata ctctagaaga tggaatttat tttgatacaa
     8761 gtaaagatga aaaatattta agcctatcaa atcgcaattt agaagaaaat atctctcgtc
     8821 taagtaatga agtgcaaaaa agaaatgaaa gcgattttgt gctttggaaa tttgatgaaa
     8881 atttttacga aagtgaattt ggcaaagggc gtccaggttg gcatactgaa tgtgttgcta
     8941 tgattgattc tatttttgaa aatacccttg atatacatgc tggagggata gatttgcttt
     9001 ttcctcatca tgaaaatgaa gctgcgcaat gtcgttgtgg atgtaagaga aaattagcaa
     9061 atatttggct tcacaatggt tttgtaaaaa tcgatggcga aaaaatgagt aaaagtttaa
     9121 ataatagttt ttttataaaa gatgctttaa aagaatttat gggcgaggct ttaagatttt
     9181 atcttttgag ttctcattat agatctcatt ttaattattc tttatcggat ttagaaaatg
     9241 ctaaaaaacg tttagataaa ttttatcgcc ttaaaaaaag attggattta ggtgaaattt
     9301 ctgattttga tgttttaaat gatattggaa taaaaagcga aattgctaag caaattttag
     9361 agattttaaa tgatgattta aatgtttcta aagccttagc tcttttggat gattttatca
     9421 gtagtgcaaa tttagagttg gataaagaaa gcaaaaataa aattttaaaa caaaatatca
     9481 aagaagcttt aagtgagcta gctaaaattt ttggctttgg ttttatggat gcaactttat
     9541 attttcaatg gggtgtaagc aaagaagaac gagaagagat tgaaaagtta attttagaaa
     9601 gaactgaggc taagaaaaac aaagatttta acacagctga tgcaataaga gagcaattaa
     9661 atagtaaaaa aatcactctt ttagatactc caaatggaac aatttgggag aaaataaatg
     9721 cataatgaga tgaatttaaa agaggtttta atacgcttta agccctttta taaaagatat
     9781 tggaaacaat ttgctatagc tatttttggt atgattttag caagcggagg aactgctgga
     9841 agtttttatg ctttagagcc tattttaaat tatattttcg ttgaaaaaaa tgaagcttta
     9901 ctttatacag tacctttttt gctagtattg atgtattttt ttaaaaatct tggaacttat
     9961 ttacaaagtt tttatgtttc ctttatagga acagatatgt taagagtatt gcgtgctagg
    10021 gttttaaaaa atgttttacg cttggatatg gattttttta aacgctatag aagcggagag
    10081 cttgtaagtc gttgtactaa tgatattaat gcacttcaaa gcatagtatc aaacattatt
    10141 cctgattttt ttagagagct tttaactgct ataggactgc ttgcggtagt cttgtatcaa
    10201 agtcctactt tggctttttt tgctttagtg attttgcctt tagctatttt tcctttggta
    10261 tggtttgcta aaaaacttaa aaaatatgca agaaatatac aagaaacaaa ttcggattta
    10321 ctttcttatt tgggtgaaat tttttcaaat attgaattga tcaaagctaa tgataatgaa
    10381 aaaaaagaaa gtgataaatt tgctaagcat aatgatactt tatgtaaatt aaacctaaaa
    10441 tccgcacgta ttgatgcact tacaagtcct ttaatggata tgatgggttc tgttggggtt
    10501 gctgtggtga ttattgtagg gggtagagag gttatcaatg gttctatgag tgtgggaagt
    10561 tttatcagtt ttgtttcggc actttttgcg atatatactc ctttaaagcg tctttcgtct
    10621 ttatatggaa aacttcaagg tgctgttgcg gcaagtgaaa gaacttttta tttattggat
    10681 ttagaacctc aaattaaagg tggaagcaaa gaattaaaaa acattgaaaa aattagcttt
    10741 gaaaatgttg aatttgctta tgaaaacccg cataaaagtg ttttaaaagg cgtaaatttt
    10801 gattttgtta aagggcaaat gcttgctctt gtagggacaa gtgggggtgg taaatcttct
    10861 attattaatc ttttgatgta tttttatgaa aagcaaaaag gtaaaatttt actcaatcaa
    10921 gaagatatta gcacttttac catagaaagc ttacatgcta aaataggact tgtaacgcaa
    10981 aatatttatc tttttaatga tagttttgct gcaaatattg cttatagcga agagttagaa
    11041 gaagaaaaag tcatccaagc tttaaaattg gccaatgctt atgaatttgt taaagaaatg
    11101 ggcgggattt gggctgaagt gaaagaacat ggtaagaact taagtggagg gcaaaaacaa
    11161 agaatagcaa tcgctagagc tttatataaa aatcctgatg tgcttatttt tgatgaagca
    11221 acttcagctt tggataatga aagtgaaaaa gcaatagtta aaactataga aaatttaaaa
    11281 caagatagat tgattttagt ggttgcacat cgtttaagca ctatagaaaa tgcggataaa
    11341 atagtagtat tggataaggg taaggtattg gcaataggta aagatgaaga gcttttgcaa
    11401 acttgttctt tgtatcaaaa atttaaaagc aaagaaaaaa caaagcccag ctttagttaa
    11461 ttttagttag aatttcaaaa aggattaaaa aatggcttat gaaatgataa aacttttact
    11521 ttttaagtta aaccctgagc atgcacatgc tttggttgaa tatagcttaa gggctttaag
    11581 tgccagtttt ccaggagctt taagtttttt agcacacaaa tatatagttg atgatgagag
    11641 tttaaggcaa aatttacttg gacttgattt taataatcct gtaggtttag caggaggctt
    11701 tgataaaaat gccactatga taagaccttt gagtgcttta ggatttggct ttttagaagt
    11761 gggaactttt actccaaaac ctcaagaagg caatgaaaag ccacgtctat ttagacttgt
    11821 aaaacaagaa agtatacaaa atgctatggg ttttaacaac gaaggtgctg aaaagattgc
    11881 tttaagactt gcaaaaacct atccttttgt tttgccttta ggggtaaata tagggaaaaa
    11941 taaaatcact ccaaatgata aagccttgga ggattatttt actttgttta gagattttaa
    12001 ggatttgtgt gattatttta tcgttaatat ctcatctcct aatactaaaa atttaagaga
    12061 gttgcaaaat gatgattttt taaatacctt gcttgaagaa gccaaaaaaa tcacttctaa
    12121 gcctattttg ataaaaattg ctcctgatat gaaaatagat gatgctttaa atttatgtga
    12181 aaatgccatt aaaaaaggtg cagatgggtt tatattagcc aatactagtg ttgattatag
    12241 tttattagat aataatcgta cttttggtgg tattagtgga agactgatta cggaaaaaag
    12301 tggtattttt ttcaaagaag taactaaaat tctttttggc aaaaccttgc ttattgcaag
    12361 tggagggatt gatagtgctg atattgctta tgagcgtatt aaaaatgggg ctaatttggt
    12421 gcaagtttat acagctttga tttttaaagg tccttctttg gtaaaaaata tcaatcaaaa
    12481 tcttatagag cttttaagaa aagatggttt tttacacatt agcgaagctg ttggggtaaa
    12541 tttaaaatga ttgcttatga aaaaattcaa ttaaaaaaca agcttgaagt ttatgctttg
    12601 cctgtaaata aaaatagcga tgtgattagc gttgatattt tttataaagt gggttcaaga
    12661 aatgagatca tgggaaaaag tggcatagct catatgttag aacatttaaa ttttaaaagt
    12721 actaaaaatt taaaagctgg cgaatttgat gagattgtta agggttttgg tggtgtggat
    12781 aatgcaagca caggttttga ctatactcat tattatatta aatgtgcgaa gaaaaattta
    12841 gataaagctt tagagctttt tgcagaactt atggcgaatt taaatttaaa agatgaagaa
    12901 tttcagcctg aaagagcagt ggttttagaa gagcgtagat ggagaacaga taataaccct
    12961 ttaggatatc tttattttag gctttttaat catgcattta tgtatcatcc ttatcattgg
    13021 actcctatag gtttttttaa ggatatagaa aattggagta ttgaagatat taaagaattt
    13081 cacagtattt attatcaacc taaaaatgcg attttacttg taagtggcga tatagaaagt
    13141 aaggaagttt ttgagctttc aaaaaaacat tttgaaaaga ttaaaaatac taagactata
    13201 cctaaaattc acacaaaaga gcctaagcaa gatggagtaa aaagaatata tttacataaa
    13261 aactcagata ctgaactatt agcccttgct tataaaattc caaatttcaa gcacaaagat
    13321 atacctgctt taaatgcttt atccgagctt ttaggaagtg ggaaaagttc tttaatgagt
    13381 gaaattttga ttgataaatt aaatttaatc aatgattatt atgcttatgt taatgattgt
    13441 atagatgaaa atttatttat ttttatttgt aattgtaacc ccaatgttaa tgcagaaaaa
    13501 gtagaaaaag agcttttaaa aatcattgat aaacttaaaa tgggtaaaat ttctcaaaaa
    13561 gatttgcaaa gagtgaaaaa taatgtcaaa agtgatttta ttttctcact taacaatgct
    13621 agtgcagtgg caaatattta tggttcatat ctagcaagag gagatatcaa tcctttgtta
    13681 aattatgaga aagatataca aaatttggaa ttaaaagatt tgatttcttg tgctaaaaaa
    13741 tattttattc aagaaaattc aactacggta attctaagaa aggattcaaa tggataaaaa
    13801 tattatcatt ggggcgatga cggctcttat tacaccattt aaaaatggaa aagttgatga
    13861 gcaaagttat gcaagattga ttaaaagaca aatagaaaat ggcatcgatg cagtagttcc
    13921 agtaggaaca acaggagaaa gtgcaacttt aacccatgaa gaacatagaa cttgcataga
    13981 aatagccgtt gagacttgta aaggaactaa agttaaggtt ttagcaggtg cgggaagtaa
    14041 tgcaactcat gaggcagtgg gtttggctaa atttgctaaa gagcatggtg ctgatgggat
    14101 tttaagtgtg gcaccgtatt ataataaacc tacgcaacaa ggactttacg agcattataa
    14161 ggctattgcg caaagtgtag atattcctgt gcttttatat aatgttccag gaagaacagg
    14221 ttgtgaaatt tcaacggata ctattatcaa gctttttaga gattgtgaaa atatttatgg
    14281 agtaaaagaa gcgagtggaa atatcgataa gtgtgtggat ttgcttgcac acgaacctag
    14341 aatgatgctt atttcagggg aagatgcgat caattatcct atactttcaa atggtggaaa
    14401 gggagtgatt tcagtaactt caaatttatt acccgatatg attagcgctt taactcattt
    14461 tgctttagat gaaaattata aagaagctaa aaaaatcaat gatgagcttt ataatatcaa
    14521 taaaatttta ttttgcgaaa gtaatcctat tcctattaaa acggctatgt atttagctgg
    14581 attgatagaa agtttggaat ttagacttcc tctttgttct ccaagtaagg aaaattttgc
    14641 taaaattgaa gaagtgatga aaaaatataa gatcaaagga ttttaatgaa tacagaattt
    14701 caaggaaaaa ctttagtgat tagcggtgga actcgcggga taggcaaagc tatagtttat
    14761 gaatttgcta aagtgggtgc aaatatagct tttacttata attctaatgc gcaaattgct
    14821 gatgaaatgg ttcaagattt ggagaaaaat tataaaatca aagctagagc ttatgaattt
    14881 aatatcttag aacctgaaac ctataaagaa ctttttgaaa aaattgatgt ggattttgat
    14941 agagtggatt attttatctc aaatgctatc atttcaggac gtgcggttgt aggtggctat
    15001 accaaattta tgaagttaaa accaaaggga attaataaca tttttacagc cacagtaaat
    15061 gcttttgttg tgggcgcaca agaagcagct aaaaggatgg aaaaagtagg gggtggaagc
    15121 attatttcta tctcatctac aggaaattta gtgtatatag aaaattattc aggtcacggt
    15181 acagcaaaag ccgctgtaga agctatggca agatatgcgg ctactgaact tggagaaaaa
    15241 aatatccgtg taaatgtcgt aagtggtggg cctattgaaa ctgatgcttt aagagctttt
    15301 acaaattatg aagaagtaaa acaggctact ataaatttaa gccctttaaa tcgcatgggg
    15361 cagcctgaag atttggctgg agcatgtctt tttctttgtt caagtaaggc aagttgggtt
    15421 acaggacata ctttcatcgt tgatggtggt acaactttta aataaaaatt aagaaaaatc
    15481 aatggatttt tcttaaaaat atttttcaat caagttttaa tttccaccct aaaaaaacac
    15541 ttaataatgc aagtaaaaaa ataaaattta aagtccaatt accaaaacct acaaaaccta
    15601 tagataatac gctgtaaaaa aatcctccca cagctgaata aatacaaatc gtacttaaag
    15661 atccattttc tgccattttt ttacatgggc agattttata aaatttttta tcgttaaatt
    15721 gatttttctt tttatttcct aaaaataaac caaaaagggc aaaaagattt aaaaaaataa
    15781 aagcatataa taaaatttga tctaattcca ttttaatata ccttaaaagt atctaagcca
    15841 agagggtaga tggacttgct cttcttttaa agtagtctct tgtccatgtc ctggtaaaag
    15901 tttaaaatct tctttgtaag tcataacttt ttctaagctt tgtttcatta aatttgcatc
    15961 tgaataagga aaatcccatc ttcctatgct tctataaaat aaaaaatctc cactaaacat
    16021 gatattttta cctacaattt ctatcatagt gcaacctggt gtgtgtcctg gtaaaaagtg
    16081 aaatttaaaa tcaactccgc aaatatttaa aatatcttca ttatctacta aaaaatccgc
    16141 atcgctagaa tcatagcctt gattaaaatc atcatgtagc ataaaagcat catttttatg
    16201 aatataaata gggatgttgt attctttttt aaccttggca ttatcccaaa tatgatcata
    16261 atgcccgtga gtatttaaaa tcgccaaagg attttttaca tgttttttga taaataaaag
    16321 tgcatcagtt cctggatcaa tgataaattc accctttggg gtaaataaaa tatagcaatt
    16381 agtttcataa actccacaag cttgtttgat aatttgcatt ttttgcctct ttaataaaaa
    16441 atttgcctta aataaatata attatacatt aaatttttaa aaggcaagct ttatggattg
    16501 gcaaaagatt acggaaaaaa tgtgtgattt tatacaagaa aaagtgaaaa attctcaaag
    16561 tcaaggtgtg gttttggggc ttagtggcgg gattgattct gctttagtag caacgctttg
    16621 taaaagagct ttaaaagaga atgtttttgc tcttttaatg ccaactcaaa tttcaaacaa
    16681 agccaatctt gaagatgctt taaggctttg tgcggattta aatcttgaat ataaaatcat
    16741 agaaattcaa agcattttag atgcttttat aaagcaaagt gaaaatacca ctctagtatc
    16801 tttgggaaat tttgcagcgc gtattagaat gagtttgctt tatgattatt ctgctttgaa
    16861 aaattcttta gtcataggca cttctaataa aagcgaattg cttttaggtt atggtacgat
    16921 ttatggggat ttagcttgtg cttttaatcc tataggatcg ctttataaaa gtgaaattta
    16981 tgccttagca aaatacctta acttgcatga aaatttcatc aaaaaagctc caagtgcgga
    17041 tctttgggaa aatcaaagtg atgaggcgga tttaggtttt tcttatacaa aaatcgatga
    17101 aggtttaaaa gctttagaaa ctaatgatga aaaactttta agaatacttg atccttcttt
    17161 gattgctatg ttaaaaaatc gcatgcaaaa aaatgctttt aagggaaaaa tgcctgaaat
    17221 tttggaaatt taaacaatga atgaagaaaa aaattatgaa ctttggcttg ataattattt
    17281 ttttaagccc aatttttggc aaaaatgcct tgcttttata cttttacctt taagtgtgct
    17341 ttatgctttt tttgcgattt taaatacttt ttttcgtaaa aaaatagttt ttaaaaagcc
    17401 tgttattagc gttggtaatt taagttttgg aggtaatgga aaaaccccgc tttgtaaagc
    17461 tatagcaagg gaatttgatg gtgtttttat agtacttagg ggctataaaa gaaagtctaa
    17521 aggtttgttt gttgttaaaa atcaaaatga aattttatgc accttaacac aaagtggcga
    17581 tgaagctatg gagtatgctt ttgaagaaaa tatcaaaggt gtgattgtga gcgaagatag
    17641 agtaaaaggt attgaaaaag cttttgaatt gggagctaaa atcgttgtgc ttgatgatgc
    17701 tttttctaaa tttcatatta aaaaatttga tattttactt gaaagtaaaa tcaaacctta
    17761 ttttaatttt accttaccaa gtggagctta tcgtttgccg aaattttatg aaaaaagggc
    17821 tgattttatt gcattagaag gcagggattt tgtgcgttat tcttttgtaa aagaaaatcc
    17881 aaaggctgtt ttggtaactg ctattgctaa accttttaga ttgtatgagc attttatcaa
    17941 ggcaagggct tgttattttt ttaaagatca ttatgagttt aaaaaagaag aattagaaaa
    18001 tttgctaaaa aaacataatt gcgatacact aatgcttact tttaaggatt ttgttaaagt
    18061 taaagatttt ggttttaaat gtcaaattat agaattaaat atagaattaa aagattcatt
    18121 aagagaaaaa ataaaaactt atatcaagga gtttgaacag tgaaattggt cgagagtaga
    18181 aatgtaaata atgtatcaag ttttaaggaa gctttgatta acccaaacgc tccagaagga
    18241 gggctttact cacctttaaa tttgcctatt tttgaaggag aaaaatatgc caatttgtct
    18301 tataaagatt ttgctttaaa gcttatagaa agttttggtt ttggcgaaga agagcttttt
    18361 aaaaaggctt tgaaaagtta cgaaagcttt gatgataaaa atacacctat ttctttgcaa
    18421 aaaatctctg aaaaaaccta tattaacgag ctttggcatg ggcctacaag agcttttaaa
    18481 gatatggctt tacagccttt tggcgtgctt ttaagcgaat tttcaaagga taaaaatatt
    18541 ttaattatct gtgctacaag cggcgataca gggcctgcaa ccctaaaaag ttttgaaaat
    18601 gcaaaaaatg ttaaagtagc ttgtatgtat ccaaaaggtg gcacaagtgg agttcaagag
    18661 ttgcaaatgc gagctttaga taaggataac ttgaaagttt ttgccataga tgaggatttt
    18721 gacgcagcgc aacgcacttt aaaagaattg cttttttcaa aagattttca aaatgaaatt
    18781 aaagctttaa attatgagct ttgcgcagct aattctgtaa attttgggcg tattttattt
    18841 cagattattt atcattatta tgcgagttta aaacttttta atgagttttt agaagaagta
    18901 caaatcatcg ttccaagtgg aaattttggc aatgctttag gagcttttta tgctaaaaaa
    18961 atgggagcta aaatttcaaa aatcaaaatc gcttcaaacg caaataatat tttgagtgaa
    19021 ttttttaatc aaggcgttta tgatttgcgt gaaaaaagtc ttaagaagac tatttctcca
    19081 gctatggata tacttatttc atctaatatc gaaagacttt tgtttgcgaa atttaaagat
    19141 aaaagaacta aagaactgat gaatttgtta aaaaatgaaa gatattttaa acttgaaaaa
    19201 gaagaattac aaagtttgca agaagatttt gaggcggatt tttgcaccga tgaagaatgt
    19261 atgcaattta tcaaacaaag caagatttta atcgatccgc ataccgcaac ttgttttaaa
    19321 atgcttgatc ctttaaaacc tagcattatc acttctacag cagaatggac aaaatttact
    19381 ccaagtatga taaaagcttt atatgatagg gattctaaga atgaaaaaga agatttaaaa
    19441 tttatagcta aagagtttaa tgtccaagtt aaagatgaaa ttttggcttt atttgatttg
    19501 aaaaatagcg atgaaaaggt atttgaagcc agaaatataa aaaaagaaat tttagattgg
    19561 atgcaaaaat gattattatt cctgcaagat taaaatcaag tcgttttcat gagaaaattt
    19621 tatgtgatat aggtggagtg cctatgtttg tggctactgc aagaagagta agtagcgtgg
    19681 atgaagtttg tatagcttta gacgatgaaa aggttttaag tatcgctaaa gaatatggtc
    19741 taaatgcggt tttaacaagc aaagatcatg aaagcggtac ggataggatt aatgaagctt
    19801 gtaagaaact agctttaaaa gatgatgaga ttattatcaa tgtccaagct gatgagcctt
    19861 ttatagaatg tgaaaattta ttaaaattta aagaatttgc aagtttttgc ttggataaaa
    19921 aagcttttat ggcgagttgt tataaaaaaa tcactcaaga agaagctatg gatcctaatc
    19981 tggttaaagt gctttgcgat aaagaagggt atgccttgta tttttcaaga gctaaaatcc
    20041 cttatgaaag agaaaattac gaggaaagtt ttaaagggca tttaggcatt tacgcttata
    20101 gtgtcaaagc tttaagggag ttttgttctt tatcaagttc tgcacttgaa agagcggaaa
    20161 aattagagca gttaagagct atagaaaatg gtaaaaaaat caaaatgctt gaaatttcaa
    20221 caacaagcat ggggattgat actaaagaag actatgaaag ggctttaaaa atttatttag
    20281 aaaaataact ccaccccaaa acggaacaaa ttttgcttat attattttaa tatatttagg
    20341 ttgaaggcaa aaaatctaaa tcaaggaatt aatatgagta tctttagtat caatgataac
    20401 tcaaactatg caaagtaaag agagtaaaga aagtaaagaa aattctaaaa taagttttgc
    20461 taatgctttt ttaaaacaaa atgctagtaa gttaaatgaa attcaaaatg caaattcaca
    20521 aactctagca agaagtgaag cattaaattc tactaataca acaaatacta gcaataatac
    20581 taattttagt ataagtagta agacaagttc tcctaattat gatatatcta gtgaatttaa
    20641 aaactctatt tatactctaa aatacaaaca agtagatata agtaatactt ctactaatac
    20701 agcctatggt tatagtgtag ataaagatgg ttatatggga agtgatttta ataaagctgc
    20761 gggacttcct gaagatttta agatacataa atctactttg gatgagatta aaaaagctgc
    20821 cgaaaatgat cctgttgttt caagtacaaa agaatactta ggcgtaagca gttattattc
    20881 taatatagat atagcaaata ctataaaaca atattataat cttttttcta atgctctagg
    20941 tcaaagcttt ccaaatgata aaacaagttt tagtgaagca gatataaatt ctatgcctag
    21001 tggttatggt gtaagtggaa cgcaatggat ggactttaat gagccaagca atagaatgaa
    21061 tattacaggt ttaaaagatt tttcaaattc tttaatttca aatgtttata aaacccctga
    21121 acaagcaaaa gaagctgatg aaatttgact tgattcagga tgtatgatca aaggattatc
    21181 atctgagact ttaggtttat ccttagaaga aatcaaaaat gtttctagag gtgaagattg
    21241 gcaatttaat cctgatatgt cagtttatcc acaaaatgaa gatggaagct attctaaaga
    21301 aactttgttt atgagttttt taaaagctca aggtggacaa cctgttgaga gtctaaaaac
    21361 cacacttaat ccaaaattag aagcttacaa gagggctatg gctaaagaga gttttagtgg
    21421 tcctgcaatt aacattgata gtattatgac aggtaaaagt gactttaaaa gcttttttag
    21481 atactgggca gagcgtggca tagaaggtga tttatatatg tatgaaaata acatttctaa
    21541 agaatctgct atgggtaatt gggctttaga cgctgagatt aaacaagctc ttgctaatgg
    21601 ttggaaagca aaacctagca ctattgattc ctacgctgat tctataatgg atagattaaa
    21661 taatcttttg ggacaaacta gggtttagga agtattaatt ttttaagttt gaaataaatt
    21721 gctaataaca aaataagata aaactagtat aattttttta caaaaaaaat tgaaaggaaa
    21781 ttatgaaaaa aattattttg atttttatct ctttttttgc tttaaatttg agtgcaaaag
    21841 atttggttgt aggaatggag cttggatatc cgccttttga aatgagcgat aaaacaggca
    21901 aagcaagtgg aattagcgtg gattttttag aagcttttgc aaagaaaaac ggctataaac
    21961 ttgtagtaaa aaatatcgct tgggatggtt taatacctgc tttaaaaaca gccaagatag
    22021 atcttattat gtcctctatg acaattaccg ataagagaaa gaaagtggtg gattttagca
    22081 ttccttatgc taaggcaaat ttggctattt taactccttt gaactctgat attacaaata
    22141 tcaaagattt agataaaaag ggcaaagttt tggctttaaa gcgtggttct acagggcatt
    22201 tatatgcggt taaaaattta aaaaatgcaa ctattaattt atttgataaa gaaaatgctg
    22261 ctattttgga agtgattcaa ggcaaggctg atggattttt ttatgatcaa cttacgattt
    22321 atcggacttg gcaaaagcat caagatacaa ccagagccat tttagcgcct tttcaagaaa
    22381 atcctgagtt ttggggtata gctgtaagaa aaggtgatga agctttaaag gacaagcttg
    22441 ataatttcat tgatgagagt aggaaaaatg gctttttaga ttttttgggc aataagtatt
    22501 taaaagacat taaagaagtt tttaagcaaa ataatatcac ttttttcttg taggctttta
    22561 ataaaatatt gataattaat attaatttta tgaattttga tatacaatat cattatctaa
    22621 attttaaata aaaggattta agataatgaa aaaagttgca ttttttttgt tatttttgtt
    22681 tttatcttgc actgtactaa acgcagctag ggagtattgc aaatatgctt atcaagaaga
    22741 tagagctata cctttaattt taaattatgg aataagattg ggggtagtag gtgctggggt
    22801 tgcgaatgca cctgcaccgg gcggaagtac ttacaattca aaaattgaca tgatggctgc
    22861 aagatgccac taagcttagt ttttgggtgt attttacaat gctagaattt atttttactc
    22921 ttattttaga ttttactttt tattctatca agaccctaga aaaagtcttt ctagggcgaa
    22981 cagccttagt aattcttttt gttgttttta tagctctttt ttgcgttaaa ggcttgtttt
    23041 tgtatatact tttagcttta gaattatttt tgcttttgta tctttttctt ggaattttgt
    23101 ttttaagatt ttataaatct taggttacaa agctttccac aagcctttgc actagcaaat
    23161 tccatccatc cactaataca aaaattaaga gtttaaaagg taaagagatc atagtaggag
    23221 gtagcatcat catacccata gccattaaaa ctgagcttac aaccatatct atgactaaaa
    23281 agggcaggta gattaaaaac cctatttcaa aagcggtttt aagctctgaa atcataaaag
    23341 caggaactaa aaccgtaagg ggaacatcat ctatggtttt gggattaggt agattgcgta
    23401 tgcgataaaa aagggctaaa tctttttcgc gagtattttt aagcataaaa tctttaaaag
    23461 gctttgctcc ttttataaaa gcctcttcat agcctatttt ttctgctaaa taaggtttta
    23521 taccttcatt ataggatttt gtagctacag gttccatgat aaaaaaagtt aaaattaaag
    23581 ccaaggttac taaaatggta ttaggtggca tactttgcgt ccccatagct tgtcgcaaaa
    23641 atgaaaatac cacaataaga cgcaagaaag aagtcataac aaaaactata cttggagcga
    23701 gcgcaagtat ggttaaaaca atcactatat ttaaagtagt aacaagctga ttaggtgtat
    23761 tgggtgcact taagcttaaa tttactgtag gaatagttgc ttcagcagca aataagctca
    23821 tgcttaaaag taaaaataat aatatttttt tcaaaattta aaaacctttt tttgtttttt
    23881 actaaagaaa tttaaatttt atcttttgat gactaaaaac tagtttaagg gtattaggat
    23941 tttaacttta aactgctaaa atagtctttt agacttctta ataacaaagg taaaaaatga
    24001 aaacttctat tttgatttta gcagcaggat taggcactag aatgaaatca caaaagccaa
    24061 aggttttgca agagctttgt caaaaaagta tgattttaca cattttaaaa aaggcttttg
    24121 ctttaagtga tgatgtaagt gtagttttat cgcatcaaaa agaacgcgtt gaaaaagaaa
    24181 ttttagaata ttttccaaaa acacaaattt tagagcaaga tttgcaaaat tatccaggaa
    24241 ctgcgggagc tttaagtggg tttgagccta aaaatgaaag agtgttgatt ctttgtggtg
    24301 atatgccttt ggttgagcaa acaagtttgg aagctttgtt gggtaataat gcaaaattaa
    24361 atctagcagt ttttaaagca agagatccta aaagttatgg tagggtggtg ataaaaaacg
    24421 atagcgttga aaaaattgtt gaatttaaag atgcaaatac gcaagaaaaa gagataaata
    24481 cttgcaatgc tggggtttat gtgattgact cgaggctttt aaaagagctt ttacctttga
    24541 ttgataacaa taatgcggca aaagagtatt atttaaccga cattgtaaaa ctagcaaaag
    24601 aaaaagatgt gatgattaaa gcagtttttg tagatgaaga tgaatttatg gggattaatg
    24661 ataaatttga actcagtata gctgaaaatt tcatgcaaaa aaaaattaaa aaatactgga
    24721 tgcaacaggg tgtgattttt catttaccgc aaagcacttt tataggtgta gatgttgaat
    24781 ttgtaggtga atgtgaagta tatgaaaatg taaggataga gggcaaaagt aagattataa
    24841 actctatcat taaaagttca agcgtgatag aaaattccat cgtagaaaat agcgatgtag
    24901 ggcctttggc acatttgcgt ccaaattgtg agttaaaaaa cactcatata ggaaattttg
    24961 tagaatgcaa aaatgcaaag ttaaataccg taaaagcagg gcatttgagc tatttaggag
    25021 attgtgagat agatagtgga accaatatag gctgtgggac tatcacttgt aattatgatg
    25081 gggtaaaaaa gcataaaacc atcataggaa aaaatgtttt tgtaggttct gatacgcaat
    25141 ttatcgcacc tgtaaaaatc gaagatgaag taatcatagc agcaggaagc acagtaagta
    25201 tcaatgtaga aaagggtgct ttgtttatca atagagcagg gcataaaatg ataaaagatt
    25261 attattataa gaaatttcaa aaatgaaaac catactttta gccattagcg gtagtatagc
    25321 tttttataaa tcttatgagc ttatttcttt gtttaaaaaa gaaggcttta gggtaaaagt
    25381 tttgctttct aatggtttgt taaaatttgc tagcaaaatg agttttgaag ccttggttga
    25441 tgaagtttta tgtgaggaaa atgaaagttg gcaaaattca aacaatcaca tagcttttag
    25501 caaggatgta gaccttgttt tgtttacccc tgcaagtgtt aattctatca ataaacttgc
    25561 ttttggtata gcggataatc tttttatcca aactttaatt gcagcaaata aacctcttat
    25621 catagctcct gcggcaaata caaatatgtt tcatcatttt agcacgcaaa attctttaaa
    25681 gatacttaaa gaaaataaag ctttgattat agagcctatt tgtaaagttt tagcttgtaa
    25741 agatgaaggc gtaggagcct tagctgaagt taaggatatt tttaatatca ccaaaagaga
    25801 gcttttaaaa gaaaagtttt ggtgcaataa aagcgtagtt atcacaggtg gcggcacaag
    25861 ggaaagaatc gatgatgtgc gttgtgtgag taatttttca agtggaaaaa tggcaaaagc
    25921 catagctgat gctttttatt ttttaggagc tagggtaaaa cttttaagct ctgtggaatt
    25981 tgatacgcct tatgagcttt gcaaatttga aagttctaag gatctaaagg agcttttgga
    26041 taaaaattta agtcatgact ttttgattat gacggctgca gtgagtgatt ttatccctca
    26101 aagtgtaaaa gggaaaatta aaaaaaatga gcatttacag ggtttaaatt tgcatctatc
    26161 tttaaatgaa gatttgctta aaacttgcaa atttcaaggc aaaaagatag gttttaagat
    26221 ggaatttgat tctcaaaatg ccttagaaaa tgcgaaaaaa tctctaaaag ataaacaact
    26281 tgatatggtt tgccttaata tcattgatca aaaaaattat tttggaagtg atcaaaatga
    26341 actttatttt atcactttaa acaatgaaaa taaaagcact ttgcaaagca aagaaaaatt
    26401 ggcatttgaa ttagtaaaat ggtgtgaaaa attatgagta tgattaattc tactttacct
    26461 atacaaatga aagttttagc taaatcaggt tatggacatt atacgctttt attaaatcac
    26521 aaaaagattc aaaccaaaag catgatagag cttgaaattg gtgctgaata tttagctgaa
    26581 ctttatatgc aaaatggtgg agttatacaa tttaaacatc tttcaaagcg tcctaatttc
    26641 aaaccttttg aagagggatt ggctttgata atcgctattt tagaggataa aatttcttat
    26701 aaaaaattca ttatacaaaa tcttttagat tgtaaagata tagagcgtta tcagatatta
    26761 aaagaaatgc tttttgcaag ttttgaaaat atttatcata ttccttttaa ctttgaaaat
    26821 aaatcttgct tgtttcaaat gcgtaaaaga gcaaaatatt tagaaattta cttatatttt
    26881 agcgtttttg gagctttaaa aattttaata gactcgcaag gcattagtgt ttttacacct
    26941 tttgccaagg tgcaaaaatt tttaaacgaa catttagatt ttaatgtatc tcaagaaaac
    27001 aagattgaac ctttgtttgt tttcaaaagg ctttttgatt ttaaaggatg aaaaatgaat
    27061 gaattaaaac accttgctgt tgttatggat ggcaataggc ggtgggctag agctaagggt
    27121 tttttggcaa agcttggata ttcccaagga gtcaaaacta tgcaaaaatt gatggaagtt
    27181 tgcatggaag aaaatatttc aaatttaagc ctttttgctt ttagtacgga aaattggaag
    27241 cgtcctaaag atgaaattga ttttatcttt gaacttttag atcgttgttt agatgaagct
    27301 ttagaaaaat ttgaaaaaaa taatgtgcgt ttaagagcta taggtgattt atcgcgcttg
    27361 gaagataaag taagagaaaa aattacctta gttgaagaaa aaacaaagca ttgtgacgca
    27421 ctttgtgtta atttggctat aagttatggt gcaagagatg agattataag agctgctaag
    27481 cgtgtgattg aaaaaaaact tgagctaaat gaagaaaatt taacgcaaaa tttagattta
    27541 cctttagatg tggatttgat gcttcgcgtt ggaaacgcta aaagactttc aaatttctta
    27601 ctttggcagt gttcatatgc tgaaatttat tttagtgaaa ctttatttcc atctcttacc
    27661 aagagagaat ttaaaaggat tattaaagaa tttagaaata gagaaagaac ttttggaaaa
    27721 tgatattttt cataataatt ctaggggctt gtttgggttc tttttgcaca agtttggcaa
    27781 gtaggataat tgaaaaaaaa ctctttttta tctcgcgctc tttttgtttt tcttgtgata
    27841 caaaattaaa atactatgaa attattccta ttttttctta tattttttta aaggcaaaat
    27901 gtcaaacttg taaatgtcat ttgtctattt ctttgttaat caatgaaatt ttaggcgcaa
    27961 ttttgcttat tttggtttat tctttaagtc aaaattttta tgatttttta t
//
LOCUS       DAPIWJ010000009        26762 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.009, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000009 DAPIWJ010000000
VERSION     DAPIWJ010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 26762)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26762)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26762
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.009"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            66..1061
                     /locus_tag="RJ259_000294"
     CDS             66..1061
                     /locus_tag="RJ259_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide synthesis protein"
                     /protein_id="HDV7366036.1"
                     /translation="MQIQQNNSLIYNTLTKKLSSFIPIKSTRRKLRNHIQYKLEHPKV
                     TNYLSNNYINPFLEGKIPHFDFEKKHYFKNDKIIWQFWYQGKNQASPMIQQCFNSVQS
                     QMKDDYTIIILDKDNIKDYLDFPPFVIEKLENNFFGEKTITFFSDLLRVCLLATYGGI
                     WCDASIFLSSKIPSELCDKDFFTFERSKIKPSKEKLKKFIKSGYFSYGYFNWNDDFKV
                     KMLSSFMIAKTNNTFIQTLKDILMNYWKNEQSSENHYYFILHIIFELLKEHGFVNDIY
                     KNMSDIECHLLQFSAKEKFNSTLWEEIQKQSFLHKLTHFKSIKKDSMIDKIILQS"
     gene            complement(1045..2217)
                     /locus_tag="RJ259_000295"
     CDS             complement(1045..2217)
                     /locus_tag="RJ259_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDV7366037.1"
                     /translation="MKKVGVVIPIYNVEKYLKECLDSVINQTYTNLEIILVNDGSTDE
                     NSLNIAKEYTLKDKRIILFDKKNGGLSSARNVGIEYFSGEYETQYIEKENELNVFKII
                     GDNPQNIYKIYKYKNALASDKLEISKIDYIIFLDSDNYWELNCIEECVVRMQNVDVLW
                     FDHACIYDDGIEDKGQKTRMNVFNFTQECTITPRDYAKQAIKVGSRDISFSWGGMIDF
                     SFLKQLKLKFINKIINEDIHFGMVLFASADSIYILPKRLYLCRLRANSISNHDKKVTK
                     ANVSEYFKDLYEFFGENAKEAKNYLKAASRMITALELIEFFKDQKNENSQAIKEAFLP
                     FYVKKALMIKKFKKDPLNLKEKLPIIKPFIQTKIPYDLWKIWQKIKGILDKINFAK"
     gene            complement(2221..3768)
                     /locus_tag="RJ259_000296"
     CDS             complement(2221..3768)
                     /locus_tag="RJ259_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDV7366038.1"
                     /translation="MNLKQISAIIIVKNAKQTLLECLNSLKDFDEIILLNNESSDNTL
                     NIANEFKKDFANLHIYHSAFIGFGALKNLALSYAKNDWILSIDADEVLENECIKELKN
                     LELQEDNIIALSRKNLYKGEWIKACGWWPDYVWRIFNKNFTRFNDNLVHESLVLPSNA
                     KKIYLKNGLRHYAFRDISHLIDKMQYYSSLWAKQNIHKKSGVLKANLRAFWTFFRNYF
                     LKNGFLYGYKGFIISVCNALGTFFKYMKLYELQKQKPKTCALIITTYNQKERLKLVLD
                     SVKNLAFLPNEVLIADDGSKEDTARLIEEYQKDFPCPLKHIWQEDEGFRAAKSRNNAI
                     KASKSEYIILIDGDMILEKDFVKNHLEFAKRKVILQGSRVILNKNESEEILKNNNYSL
                     AFNKKGFKNQRSIFLAKCVYKFSKLTKKFFKKSQLVKGSKTCNMSFYKSDFEAIEGFN
                     EKFIGWGREDSEFVARFLFNDGVFKRLKFNALAYHIYHEENSKNMLEINHQIYLETIK
                     NEKTTWR"
     gene            complement(3765..4652)
                     /gene="htrB"
                     /locus_tag="RJ259_000297"
     CDS             complement(3765..4652)
                     /gene="htrB"
                     /locus_tag="RJ259_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase
                     HtrB"
                     /protein_id="HDV7366039.1"
                     /translation="MKNSDRIYLSLYYILKFFVTFMPECILHFLALIVARIAFYLNKK
                     HRKIINTNLQICFPQYTQKERDKLSLKIYENFAQFGIDCLQNQNTTKEKILNKVNFIN
                     ENFLIDALALNRPIIFTTAHYGNWEILSLAYAAKYGAISIVGKKLKSEIMYEILSQSR
                     TQFDIELIDKKGGIRQMLSALKKGRTLGILTDQDCVENESVRLKFFNKEVNYQMGASL
                     IAQRSNALIIPVYAYKEDGKFCIEFFKVKDSQNASLEELTLYQAQSCEEMIKKRPWEY
                     FFFHRRFASYNKEIYKDAK"
     gene            complement(4642..5670)
                     /gene="waaC"
                     /locus_tag="RJ259_000298"
     CDS             complement(4642..5670)
                     /gene="waaC"
                     /locus_tag="RJ259_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HDV7366040.1"
                     /translation="MKIAIVRLSALGDIIQSAVVLQFIKNFKKDIEIHWFVDEKFEGI
                     LKNHPLINKLYALPLKDKKILKSLKILLKARKNNYNAVIDLQGLIKSAIVSRILSRNN
                     FGFDKNSLKESFAHNFYNQKLELDYNENVFVRYLSLTSFMLNTDFNVKNLAFKQDIFS
                     VDENLKQLLNNKLKLDKNEKNILIHVGSSVENKIYPKTKLAILCKLLINEFQQTKIWL
                     AWGNVKEYEFAKEVLNLSGIDETHIELAPKFNLEELMAFTKMMNLIIGNDSGPTHLAF
                     ALNKASITIFGATPSYRNAFQTHINKIIDAGKKIQNAKHIDKSDFCITRIEEEDIFKL
                     AKGLLNEK"
     gene            5736..6530
                     /locus_tag="RJ259_000299"
     CDS             5736..6530
                     /locus_tag="RJ259_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HDV7366041.1"
                     /translation="MAKNEGYICVFDCESVPDVELIRKTLGFEGSDLEVSLKALQWQK
                     EQSGSEFLPLPYHKIISICAVLSDNFGKFIKVNKIDGQNEKEMIANFFNFIENYEPKL
                     VSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWNNYKTRFSELKHCDLLESLGSNG
                     RGIKLDTLCSMVGLPGKYDVHGDEVMKLFYENKLEKIHEYCESDVLNTYMLFLKYELI
                     KANVDEEDYVGFLSYMRDFLCAKKSDRSYTEVFAKACESEISKVRS"
     gene            6588..7574
                     /gene="galE"
                     /locus_tag="RJ259_000300"
     CDS             6588..7574
                     /gene="galE"
                     /locus_tag="RJ259_000300"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HDV7366042.1"
                     /translation="MKILISGGAGYIGSHTLRQFLKTDHEICVLDNLSKGSKIAIEDL
                     QKIRAFKFFEQDLSDFQGVKALFEREKFDAIVHFAASIEVFESMQNPLKYYMNNTVNT
                     TNLIETCLQTGVNKFIFSSTAATYGEPQTPVVSETSPLAPINPYGRSKLMSEEVLRDA
                     SMANPEFKHCILRYFNVAGACMDYTLGQRYPKATLLIKVAAECAAGKRDKLFIFGDDY
                     DTKDGTCIRDFIHVDDISSAHLAALDYLKENESNVFNVGYGHGFSVKEVIEAMKKVSG
                     VDFKVELAPRRAGDPSVLISDASKIRNLTSWQPKYDDLELICKSAFDWEKQC"
     gene            7568..9262
                     /gene="pglK"
                     /locus_tag="RJ259_000301"
     CDS             7568..9262
                     /gene="pglK"
                     /locus_tag="RJ259_000301"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type lipopolysaccharide transporter PglK"
                     /protein_id="HDV7366043.1"
                     /translation="MLKKLFFILSKEDKNFLFFLLVFSVFISFIETFAISLVMPFITL
                     ASDFSYFDRNKYLISLKEYLNIPVFEIIVYFGVGLIVFYVFRALLNAYYFHLLARFSK
                     GRYHAIAYKVFSKFLNINYEKFTQKNQSEILKSITGEVYNLSTMISSFLLLMSEIFVV
                     LLLYALMLLINYKITLFLSIFMVLNAFILVKILSPIIKKAGVRREEAMKNFFEILNTN
                     LNNFKFIKLKTKEDGVLSLFKAQSEAFSKANITNESVAAVPRIYLEGIGFCVLVFIVV
                     FLVLKNESDISGILSTISIFVLALYRLMPSANRIITSYHDLLYYHSSLDIIYQNLRQE
                     EENLGEEKLSFNQELKICNLSFGYEGKKYLFKNLNLNIKKGEKIAFIGESGCGKSTLV
                     DLIIGLLKPKEGQILIDEQELNANNTKNYRQKIGYIPQNIYLFNDSIAKNITFGDAVD
                     EEKLNRVIKQANLEHFIKNLPQGVQTKVGDGGSNLSGGQKQRIAIARALYLEPEMLVL
                     DEATSALDTQSEAKIMDEIYKISKDKTMIIIAHRLSTITQCDKVYRLEHGKLKEEK"
     gene            9259..10338
                     /gene="pglH"
                     /locus_tag="RJ259_000302"
     CDS             9259..10338
                     /gene="pglH"
                     /locus_tag="RJ259_000302"
                     /EC_number="2.4.1.292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-
                     diNAcBac-PP-undecaprenol
                     alpha-1,4-N-acetyl-D-galactosaminyltransferase"
                     /protein_id="HDV7366044.1"
                     /translation="MMKISFIIATLNSGGAERALVTLANALCKEHEVSIIKFHAGESF
                     YKLENEVKVTSLEQFRFDTLYHKIASRFKKFFALRKALKESKSDVFISFLDTTNIACI
                     AAKIGLKTPLIISEHSNEAYLKPKIWRFLRRVSYPFCDALSVLGSSDKVYYERFVKRV
                     KLLLNPCHFSDEISFDSSFEKENLVLFIGRLDHNKNPVMFLKAIAHLDKNLQENYKFV
                     IAGDGQLRQELEYKVKSLGIKVDFLGRVENVKALYEKAKVLCLCSFVEGLPTVLIESL
                     YFEVCRISSSYYNGAKDLIKDNHDGLLVGCDDEIALAKKLELVLNDENFRKELVNNAK
                     QRCKDFEISHIKEEWLKLIAEVKNA"
     gene            10331..11260
                     /gene="pglI"
                     /locus_tag="RJ259_000303"
     CDS             10331..11260
                     /gene="pglI"
                     /locus_tag="RJ259_000303"
                     /EC_number="2.4.1.293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc(5)-diNAcBac-PP-undecaprenol
                     beta-1,3-glucosyltransferase"
                     /protein_id="HDV7366045.1"
                     /translation="MPKLSVIVPTFNRQVLLEKAIKSIQNQDFKDLEIIVSDDNSSDD
                     TKSVVQNLQKDDDRIKYFLNQNYKQGPNGNKNNGLDQASGEFVTFLDDDDELLSGALS
                     TLMQKANEGYAHVFGNCLIEKEGNLSKEFSGKGLEKDSEISKKDFLMAKFSGEFFSVF
                     KKSLLENKRFNEEFYGNEATLWVNLYKEKSFYIHKAFRIYRIFRQDSVTLGASKNAYR
                     VYLGYLELAKILENELRMSKDKDYKKTCASYYKMAAYYAKLAKNYKALYKCLFKSLSI
                     KINAPALILLILSIIPNNMIEKLSKIRVALCKN"
     gene            11248..12345
                     /gene="pglJ"
                     /locus_tag="RJ259_000304"
     CDS             11248..12345
                     /gene="pglJ"
                     /locus_tag="RJ259_000304"
                     /EC_number="2.4.1.291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylgalactosamine-N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     4-alpha-N-acetylgalactosaminyltransferase"
                     /protein_id="HDV7366046.1"
                     /translation="MQKLGIFIYSLGSGGAERVVATLLPILSLKFEVHLILMNDKISY
                     EIPECQIHFLECSKPSENPILKFLKLPFLALKYKKLCRNLGIDTEFVFLNRPNYIALM
                     ARMFGNKTRLVINECTTPSVMYMKNNFNSLVNKFLISLLYPKADLILPNSKGNLEDLV
                     QNFSISPKKCEILYNAIDLENIGQKALEDIALKDKFILSVGRLDKGKNHALLIRAYAR
                     LKTDLKLVILGEGVLKDELLALIKELNLEEKVLLLGFDNNPYKYMAKCEFFAFASVFE
                     GFSNVLIESLACSCAVVCTDHKSGARELFGDDEFGLLVEVDNENSMFQGLKTMLEDDK
                     LRKAYKNKAKTRAKAFDKVKIARDALKYLLG"
     gene            12349..14490
                     /gene="pglB"
                     /locus_tag="RJ259_000305"
     CDS             12349..14490
                     /gene="pglB"
                     /locus_tag="RJ259_000305"
                     /EC_number="2.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphooligosaccharide--protein
                     glycotransferase"
                     /protein_id="HDV7366047.1"
                     /translation="MLKKEYLKNPYLVLFAMIVLAYVFSVFCRFYWVWWASEFNEYFF
                     NNQLMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLSTLTYWLYKITPFSFESIIL
                     YMSTFLSSLVVIPIILLANEYKRPLMGFVAALLASVANSYYNRTMSGYYDTDMLVIVL
                     PMFILFFMVRMILKKDFFSLIALPLFIGIYLWWYPSSYTLNVALIGLFLIYTLIFHRK
                     EKIFYIAVILSSLTLSNIAWFYQSAIIVILFALFALEQKRLNFMIIGILGSATLIFLI
                     LSGGVDPILYQLKFYIFRSDESANLTQGFMYFNVNQTIQEVENVDFSEFMRRISGSEI
                     VFLFSLFGFVWLLRKHKSMIMALPILVLGFLALKGGLRFTIYSVPVMALGFGFLLSEF
                     KAILVKKYSQLTSNVCIVFATILTLAPVFIHIYNYKAPTVFSQNEASLLNQLKNIANR
                     EDYVVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNFFPSFSLSKDEQAAANMARLSVEY
                     TEKSFYAPQNDILKSDILQAMMKDYNQSNVDLFLASLSKPDFKIDTPKTRDIYLYMPA
                     RMSLIFSTVASFSFINLDTGVLDKPFTFSTAYPLDVKNGEIYLSNGVVLSDDFRSFKI
                     GDNVVSVNSIVEINSIKQGEYKITPIDDKAQFYIFYLKDSAIPYAQFILMDKTMFNSA
                     YVQMFFLGNYDKNLFDLVINSRDAKVFKLKI"
     gene            14500..15630
                     /gene="pglA"
                     /locus_tag="RJ259_000306"
     CDS             14500..15630
                     /gene="pglA"
                     /locus_tag="RJ259_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HDV7366048.1"
                     /translation="MRIGFLSHAGASIYHFRMPIIKALKDRKDEVFVIVPQDEYTQKL
                     RDLGLKVIVYEFSRASLNPFVVLKNFFYLAKVLKNLNLDFIQSAAHKSNTFGILAAKW
                     AKIPYRFALVEGLGSFYIDQGFKANLVRFVINNLYKLSFKFAHQFIFVNESNAEFMRN
                     LGLKENKICVIKSVGINLKKFFPIYVESEKKELFWKNLNIDKKPIVLMIARTLWHKGV
                     KEFYESAAMLKDKANFVLVGGRDENPSCASLEFLNSGVVHYLGARSDIVELLQNCDIF
                     VLPSYKEGFPVSVLEAKACGKAIVVSDCEGCVEAISNAYDGLWAKTKNAKDLSEKISL
                     LLEDEKLRLNLAKNAAQDALQYDENNIAQRYLKLYDRVIKNV"
     gene            15623..16225
                     /gene="pglC"
                     /locus_tag="RJ259_000307"
     CDS             15623..16225
                     /gene="pglC"
                     /locus_tag="RJ259_000307"
                     /EC_number="2.7.8.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl phosphate
                     N,N'-diacetylbacillosamine 1-phosphate transferase"
                     /protein_id="HDV7366049.1"
                     /translation="MYEKVFKRIFDFILALVLLVLFSPVILITALLLKITQGSVIFTQ
                     NRPGLDEKIFKIYKFKTMSDERDEKGELLSDELRLKAFGKIVRSLSLDELLQLFNVLK
                     GDMSFVGPRPLLVEYLPLYNKEQKLRHKVRPGITGWAQVNGRNAISWQKKFELDVYYV
                     KNISFLLDLKIMFLTALKVLKRSGVSKEGHVTTEKFNGKN"
     gene            16212..16799
                     /gene="pglD"
                     /locus_tag="RJ259_000308"
     CDS             16212..16799
                     /gene="pglD"
                     /locus_tag="RJ259_000308"
                     /EC_number="2.3.1.203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine N-acetyltransferase"
                     /protein_id="HDV7366050.1"
                     /translation="MARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFES
                     TLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPY
                     VVINAKAKIEKGVILNTSSVIDHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVL
                     PNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM"
     gene            16756..17409
                     /locus_tag="RJ259_000309"
     CDS             16756..17409
                     /locus_tag="RJ259_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366051.1"
                     /translation="MKKVFLWEYLQKGCKLHFNNNLVVHYIVNPSPLGWIVINLLTIC
                     LICYIFPLKNSLKHKKLFSLKANVNSKNSRIIKYTGIAAFLGGLIGIWYNFEGFYQLL
                     FFFELENENLKTLWSLQVSVSSVITGMLLLLIYVINLAMVCENGIYIVSKFNLFYMYF
                     IKREDLEIVKIEKMKFLNQVEVCFVIKTKNKILLKCFESIYKKEDLEKLKNWYENKL"
     gene            17505..18665
                     /gene="pglE"
                     /locus_tag="RJ259_000310"
     CDS             17505..18665
                     /gene="pglE"
                     /locus_tag="RJ259_000310"
                     /EC_number="2.6.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine transaminase"
                     /protein_id="HDV7366052.1"
                     /translation="MRFFLSPPHMGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKAY
                     SKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD
                     ETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENEIVLIEDAAEAL
                     GSFYKNKALGTFGEFGAYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLH
                     YEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGECFSFLDELENS
                     RSNRWLSTALIDFDKNELNSCQKDINISQKNITLHPKISKLIEDLKNEQIETRPLWKA
                     MHAQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA"
     gene            18667..20439
                     /gene="pglF"
                     /locus_tag="RJ259_000311"
     CDS             18667..20439
                     /gene="pglF"
                     /locus_tag="RJ259_000311"
                     /EC_number="4.2.1.135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (configuration-retaining)"
                     /protein_id="HDV7366053.1"
                     /translation="MIFYKSKRLAFFLTSDIVLILLSVYLAFSLRFSGDIPSIFYHGM
                     MVSAIILLVLKLSFLFVFRIYKVAWRFFSLNEARKIFIALLLAEFCFFLIFYFFSDFF
                     NPFPRSAIVIDFVLSYMFIGTLRISKRMLVDFKPSRMKEEETPCIVVGATSKALHLLK
                     GAKEGSLGLFPVGVVDARKELIGTYCDKFIVEEKEKIKSYVEQGVKTAIIALRLEQEE
                     LKKLFEELVAYGICDVKIFSFTRNEARDISIEDLLARKPKDLDDSAVAAFLKDKVVLV
                     SGAGGTIGSELCKQCIKFGAKHLIMVDHSEYNLYKINDDLNLYKEKITPILLSILDKQ
                     SLDEVLKTYKPELILHAAAYKHVPLCEQNPHSAVINNILGTKILCDSAKENKVAKFVM
                     ISTDKAVRPTNIMGCTKRVCELYTLSMSDENFEVACVRFGNVLGSSGSVIPKFKAQIA
                     NNEPLTLTHPDIVRYFMLVAEAVQLVLQAGAIAKGGELFVLDMGKPVKIIDLAKKMLL
                     LSNRNDLEIKITGLRKGEKLYEELLIDENDAKTQYESIFVAKNEKVDLDWLNKEIENL
                     QICEDISEALLKIVPEFKHNKEGV"
     gene            20439..21332
                     /locus_tag="RJ259_000312"
     CDS             20439..21332
                     /locus_tag="RJ259_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HDV7366054.1"
                     /translation="MYIKDIQRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTAL
                     DKIAHEVVVFDALYILDISGMQIENAISLNKAHEIGQGEDRSTRSYFYRAVKLRRCVL
                     SDPYPSVLNNELCVTASMPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSR
                     LVYFCFALVLFVITCFLFQKGFFSLFDNQAIGIEHMFESTIAITLALAIFDLAKTLIE
                     QEVLGRTKKEEGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMIYAIYLIGGV
                     SLLLLGLSVYLFTVKYKNNNI"
     gene            21445..21837
                     /locus_tag="RJ259_000313"
     CDS             21445..21837
                     /locus_tag="RJ259_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HDV7366055.1"
                     /translation="MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKN
                     EDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNY
                     IVKPFTPQVLKEKLEDVLGTGSGEGAAE"
     gene            21860..22705
                     /locus_tag="RJ259_000314"
     CDS             21860..22705
                     /locus_tag="RJ259_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HDV7366056.1"
                     /translation="MQKKYYELFFIVEERYKNLFLDFAFDLGIEAIEEKDNGVYIRSH
                     ESLEEFSWALEIFAQKLTTTFNLNHKIISNLSLVEKENKDWIQEYKKGIKPILVDNVY
                     IHTTWQEEKKNCINIKINPALAFGSGHHESTYSCVKFLQKFSKSKLRALDLGCGSGIL
                     GIIMAKFGCNVEICDTDELAIDSSLENARLNGVDFHKAWCGSIDKANGLYNLIVANII
                     ADVILILEKDIKNHLEDNAILILSGILDKYSTRIKEKFQDLELIDEMQINEWCSFVYK
                     NNKKG"
     gene            22709..24646
                     /gene="ftsH"
                     /locus_tag="RJ259_000315"
     CDS             22709..24646
                     /gene="ftsH"
                     /locus_tag="RJ259_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HDV7366057.1"
                     /translation="MNNNTQNNKGNPQGNNFFNKNPIFIFAIFAIVMIIIFKGFFDGN
                     GSFGGALNGNEVNKNVPYSELKKLIESGQINQVSIGQTTIKAISSSHNTVYTAKKVND
                     PELVSLLDSKNIAYGAYSETNWFTDILFSWVLPVFIFFGIWMFLASRMQKNMGSSILG
                     IGSSKKLVNSEKPKVKFSDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLLVG
                     PPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFI
                     DEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAA
                     LLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLANI
                     INEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINEKEKKIVTYHECGHALIA
                     ETTKGAKRVSKVSVIPRGLAALGYTLNTPEENKFLMQKHELIAEVDVLLGGRAAEEVF
                     IGEISTGASNDLERATDIIKAMISMYGMSEIAGLMVLEKQRNTFLSGGQTIKDYSEKM
                     AESLDDYVKKTLDERYKDVKDTLNTYKGAIETMVAALYEEETIEGNKVREIIKEFEDQ
                     NSLPTRLQELEEVKTEVKVEE"
     gene            24643..25260
                     /locus_tag="RJ259_000316"
     CDS             24643..25260
                     /locus_tag="RJ259_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDV7366058.1"
                     /translation="MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLF
                     RAPKRELVCSDEKAIFAPMDGRVTKIENIHHKDLGECVEITIKNALYDAGNFNTPFAM
                     SIIDIRLRHGLFLCSELKSAKMMNERAFILAKVKESKMIALRIYAGSFDRKLKLDNIS
                     HDLKAGDRMGFLINGSISLLLPKDTRIYIGLNDEIKAGSLLGYFA"
     gene            25270..25998
                     /gene="pssA"
                     /locus_tag="RJ259_000317"
     CDS             25270..25998
                     /gene="pssA"
                     /locus_tag="RJ259_000317"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HDV7366059.1"
                     /translation="MNNRPQLIYILPNLFTAASAFLGVISIIASIHGNYYTALIYIIL
                     SLICDGLDGRVARLTNSTSKFGVEFDSLADLVAFGVAPAVLFYMAIGYDFGKLGSLIT
                     AFFVVFGAIRLARFNVTTGTYEPSVFIGLPIPTAAVVSAIWTYAFISYDFLKPYGVVF
                     LVLQAILGLLMVSNIRYPSFKKLDFNRSSVLKVLIILIIIFSFLYLYPLESLVILASL
                     YVLYGIIRVLYTIIVSKFKIRNQE"
     gene            complement(25989..>26762)
                     /locus_tag="RJ259_000318"
     CDS             complement(25989..>26762)
                     /locus_tag="RJ259_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HDV7366060.1"
                     /translation="LQDILYEKNITIKFHSFQNFYEDFKSHKFNFNHEHQSIFKKNTS
                     QQITLLHPTRIRRPKFVNSTHALAKIIHSVAHIEFNAINLALDASYRFKNLPLQFYYD
                     WLEVAGEEIKHFKLLNSALKELGYKYGNFPVHDNLESALEATKDSLSFRMGVVHRGLE
                     AKGLDANPFVVQKLQSSNHSIKNLLMEYLEIILNDEIKHVKKGDTWWKFANQNRYDFI
                     ELCKTFKQFSLAGKKLNIQARIKAGFTQEECEVIEKFYS"
BASE COUNT         9126 a         3231 c         4672 g         9733 t
ORIGIN      
        1 gttttcatat atacataacc ttaattattt ttgatattat atcaaaaaac tttttaggaa
       61 tatatatgca aatacaacaa aacaattctt taatttataa tactttaaca aaaaaactaa
      121 gctcatttat acccataaaa tcaacaagaa gaaaattaag aaatcatatt caatataagc
      181 tagaacaccc taaagtgact aattatcttt caaacaacta tattaatcct tttttagaag
      241 ggaaaattcc tcattttgat tttgaaaaaa aacattattt taaaaacgat aaaattattt
      301 ggcaattttg gtatcaaggt aaaaatcaag cttcacctat gatacaacaa tgttttaact
      361 ctgtacaaag tcaaatgaaa gatgactaca caattatcat tttagataaa gataatataa
      421 aagattacct tgattttcca ccatttgtta tagaaaaatt agaaaataat ttttttggag
      481 aaaaaactat aacttttttt tcagatcttt taagagtatg cttgcttgca acttatggag
      541 gtatatggtg tgatgcaagt atatttttaa gttctaaaat tcctagtgaa ctttgtgata
      601 aagacttttt tacctttgaa agatcaaaaa taaaacctag taaagaaaaa ttgaaaaaat
      661 ttatcaaaag tggatatttt tcttatggat actttaactg gaatgatgat tttaaagtta
      721 aaatgctaag tagttttatg atagccaaaa caaacaatac ttttattcaa actctaaaag
      781 atattttaat gaattattgg aaaaatgagc aatcaagtga aaatcactat tattttatac
      841 tacatatcat atttgaactt ttaaaagagc atggctttgt aaatgatatc tataaaaaca
      901 tgagcgatat agaatgccat ttattacaat ttagtgccaa agaaaaattt aattcaactc
      961 tttgggaaga aattcaaaaa caaagctttt tacacaaact cacgcatttt aaatctataa
     1021 aaaaagattc aatgatagat aaaatcattt tgcaaagttg attttatcta aaataccctt
     1081 tattttttgc caaattttcc aaagatcata aggaattttt gtttggataa aaggtttaat
     1141 tataggtaat ttttccttta aattcaaagg atctttttta aattttttaa tcatcaaagc
     1201 cttttttaca taaaaaggca aaaaagcctc ttttatggct tgagaatttt catttttttg
     1261 atctttaaaa aattctatca actccaaagc tgttatcatc ctacttgctg cttttaaata
     1321 gttttttgcc tctttagcat tttctccaaa aaattcatac aagtctttaa aatactctga
     1381 cacatttgcc tttgtaactt ttttatcatg atttgatata ctatttgccc tcaaacggca
     1441 taagtacaat ctttttggta aaatatagat actatcagca ctcgcaaaca aaaccatgcc
     1501 aaaatgaata tcttcattga tgattttgtt gataaattta agttttaatt gttttaaaaa
     1561 tgaaaaatct atcataccac cccagctaaa cgagatatcc ctcgaaccta cttttatagc
     1621 ttgcttagca tagtctcttg gagtgatagt gcattcttga gtaaaattaa atacattcat
     1681 ccttgttttt tgacccttat cttctatacc atcatcataa atacaagcat ggtcaaacca
     1741 taatacatct acattttgca ttcttacaac acactcttct atgcagttta actcccaata
     1801 attatcagaa tctaaaaaga taatataatc aatctttgaa atttctagct tatcactcgc
     1861 taaagcattt ttgtacttat aaattttata aatattttgt ggattatcgc caataatctt
     1921 aaaaacattt aattcatttt ctttttcaat atattgtgtt tcatattctc cactaaaata
     1981 ttctatacct acatttctag cactacttaa accaccattt tttttatcaa aaagaattat
     2041 tcttttatct tttaaagtat attcttttgc aatattgagt gagttttcat ctgtactacc
     2101 atcatttact agtatgattt ctaaattagt ataagtttga ttgattacac tatctaaaca
     2161 ttcttttaga tatttttcta cattgtatat ggggattact acacctactt ttttcatgtt
     2221 ttatctccaa gttgtttttt cattttttat agtttcaaga taaatttgat gattgatttc
     2281 gagcatattt ttgctatttt cttcatgata gatatgataa gccagagcat taaatttaag
     2341 ccttttaaac actccatcat taaataaaaa tctagctaca aactcactat cttccctacc
     2401 ccagcctata aatttttcat taaatccctc aatggcttca aaatcacttt tataaaaact
     2461 catattgcaa gttttactac ctttaacaag ttgtgatttt ttaaaaaatt tcttagttag
     2521 ttttgaaaat ttatatacac atttagctaa aaaaatactt ctttgatttt taaaaccttt
     2581 tttattaaaa gctaaactat aattattgtt ttttaagatt tcttcgcttt catttttatt
     2641 taaaattact cttgaacctt gtaaaattac tttgcgtttt gcaaattcta aatgattttt
     2701 tacaaagtct ttttctaaaa tcatatcacc atcaattaaa attatatatt cacttttaga
     2761 agctttaata gcattatttc tactttttgc agcacgaaaa ccctcatctt cttgccaaat
     2821 gtgttttaaa gggcaaggaa aatctttttg atattcttca ataagccttg ctgtatcttc
     2881 tttgctacca tcatctgcga ttaaaacttc attgggtaaa aaggctagat ttttaacact
     2941 atcaagcact aatttaaggc gttctttttg attataagtt gttattatta aagcgcaagt
     3001 ttttggcttt tgcttttgaa gttcatataa tttcatgtat ttaaaaaaag tccctaaggc
     3061 attgcaaacg ctaattataa aacccttata accatataaa aagccatttt ttaaaaaata
     3121 atttctaaaa aaagtccaaa aagctcttaa atttgctttt aaaacaccac tttttttgtg
     3181 tatattttgt tttgcccaaa ggcttgagta gtactgcatt ttgtcaatta ggtgggaaat
     3241 atctctaaaa gcataatgcc ttaatccatt tttaagataa atttttttag cattacttgg
     3301 caaaacaagg ctttcatgta ctaaattatc attaaaacga gtgaaatttt tattaaaaat
     3361 tctccaaaca taatcaggcc accaaccaca tgcctttatc cattcgcctt tatagagatt
     3421 tttacgacta agtgcgatga tattatcttc ttgaagttct aaatttttaa gctctttaat
     3481 acactcattt tcaagcactt catcagcatc aatgcttaaa atccaatcat tttttgcata
     3541 acttaaagca aggtttttta aagctccaaa acctataaaa gcactgtggt aaatgtgcaa
     3601 attagcaaaa tcttttttaa attcattagc tatatttagg gtattatcac tactttcatt
     3661 gttaagtaaa ataatttcat caaaatcttt taaagaattt aaacattcaa gcaaggtttg
     3721 ttttgcattt tttacgatga taatagcact tatttgcttt agattcattt tgcatccttg
     3781 taaatttcct tattataact tgcaaagcgt ctatgaaaaa aaaagtattc ccaaggtctt
     3841 tttttaatca tttcttcgca actttgtgct tgataaagtg tcagttcttc taagcttgca
     3901 ttttgagaat cttttacttt aaaaaactct atgcaaaatt taccatcttc tttataggca
     3961 taaacaggga tgatcaaagc attacttctt tgtgcgataa ggcttgctcc catttgataa
     4021 ttcacttctt tgttaaaaaa ttttaatctt acgctttcgt tttctacaca gtcttgatca
     4081 gttaaaattc ccaaagttct cccttttttt agagcgctta gcatttgtct tatgccgcct
     4141 tttttgtcga taagttctat gtcaaattgg gtgcgacttt ggcttaaaat ttcatacata
     4201 atttcacttt ttaacttttt ccctactata gaaatcgcac catatttagc tgcataagca
     4261 aggcttaaaa tttcccagtt tccatagtgt gcagttgtga agataatagg acgatttaaa
     4321 gctagagcat ctataagaaa attttcattg atgaaattta ctttattgag aattttttct
     4381 ttggtggtgt tttgattttg caaacaatca atcccaaatt gagcaaaatt ttcataaatt
     4441 tttaaagaca atttatcgcg ttctttttga gtgtattgag gaaaacagat ttgcaaattt
     4501 gtattgatga ttttgcggtg ttttttgtta agataaaaag cgattcttgc tacaatcaaa
     4561 gctaaaaaat gcaagataca ctcaggcata aaagtaacaa aaaatttcaa aatataataa
     4621 agactaagat atattctatc actatttttc attaagtaag cctttggcaa gtttgaagat
     4681 atcttcttct tctatacgcg tgatacaaaa atcactttta tcgatatgct tggcattttg
     4741 gattttttta cctgcatcaa tgattttatt gatatgagtt tgaaaagcat tgcggtagct
     4801 tggtgttgca ccaaaaatcg taatagatgc cttatttaaa gcaaaagcca aatgtgttgg
     4861 gccgctatca tttcctatga ttaaattcat catttttgta aaagccatta gttcttcaag
     4921 attgaatttt ggcgctaatt ctatatgtgt ttcatcaata ccactaagat ttaaaacctc
     4981 tttagcaaat tcgtattctt ttacatttcc ccaagcgagc caaatttttg tttgttgaaa
     5041 ttcattgatt aaaagcttac aaagtatagc aagtttggtt ttaggataga ttttattttc
     5101 tacacttgag cccacatgta tgagtatgtt tttttcgttt ttgtcgagtt tgagtttatt
     5161 atttaagagt tgttttaaat tttcatctac gctaaaaata tcttgtttaa aggctaaatt
     5221 tttgacatta aaatcagtat ttaacataaa ggaggtaaga cttaagtatc ttacaaatac
     5281 attttcattg taatctaact caagtttttg gttgtagaaa ttatgagcaa aactttcttt
     5341 aagactattt ttatcaaaac caaaattatt tctacttaaa attcgactta caatagcaga
     5401 ttttatgagc ccttgtagat ctattactgc attatagttg ttttttcttg ctttaagaag
     5461 aatttttagg ctttttaaaa tttttttgtc ttttaagggc agggcataga gtttgtttat
     5521 taaaggatgg tttttaagta tgccttcaaa tttttcatct acaaaccaat gaatttctat
     5581 atctttttta aaatttttga taaattgcaa aaccacggca ctttgtataa tatcaccaag
     5641 tgctgacaaa cgaacaattg ctattttcat taaaagccta atattttaaa atttttgcta
     5701 tgattttagc gaaattattt aaaaaaaggt taaaaatggc aaaaaatgaa ggttatattt
     5761 gtgtttttga ttgtgagagt gtgccagatg ttgagcttat ccgcaaaact ttgggttttg
     5821 aaggaagtga tttagaggta agtttaaaag cacttcagtg gcaaaaagaa caaagtggga
     5881 gtgagttttt gcctttgcct tatcataaaa ttatcagtat ttgtgcggtt ttaagtgata
     5941 attttggaaa atttatcaaa gtgaataaaa ttgatggaca aaatgaaaaa gaaatgattg
     6001 ctaatttttt taattttata gaaaattatg agccaaaatt agtcagtttt aatggtaaaa
     6061 atttcgatat gcctgttctt gttttaaggg ctttaaaata caatttaaaa gcagcaactt
     6121 atttggatac tcaaagtgat aaatggaata attataaaac aagattttca gaattaaaac
     6181 attgtgattt attagaatcc ttaggatcta acgggcgtgg aataaagctt gatacacttt
     6241 gttctatggt gggtttgcca ggaaaatatg atgtgcatgg cgatgaggta atgaaacttt
     6301 tttatgaaaa taaacttgaa aaaatccacg aatattgtga aagtgatgtt ttaaacacct
     6361 atatgctttt tttaaaatat gaacttatta aagctaatgt tgatgaagaa gattatgttg
     6421 gttttctttc ttatatgaga gatttcttgt gtgcaaaaaa atcagatcgt tcttatacag
     6481 aagtttttgc aaaagcttgt gagagtgaaa tttcaaaagt tcgatcttaa gtatttaaga
     6541 aaatatatta aaatttattt ttgacatttt taaaaaaagg aatgatgatg aaaattctta
     6601 ttagcggtgg tgcaggttat ataggttctc atactttaag acaattttta aaaacagatc
     6661 atgaaatttg tgttttagat aatctttcta agggttctaa aatcgcaata gaagatttgc
     6721 aaaaaataag agcttttaaa ttttttgaac aagatttaag tgattttcaa ggcgtaaaag
     6781 cattgtttga gagagaaaaa tttgacgcta ttgtacattt tgcagcgagc attgaagttt
     6841 ttgaaagtat gcaaaatcct ttaaaatatt atatgaacaa cactgttaat acaacaaatc
     6901 tcatcgaaac ttgtttgcaa actggagtga ataaatttat attttcttca acggcggcca
     6961 cttatggcga accacaaact cccgttgtga gcgaaacaag tcctttagca cctattaatc
     7021 cttatgggcg tagtaagctt atgagtgaag aagttttgcg tgatgcaagt atggcaaatc
     7081 ctgaatttaa gcattgtatt ttaagatatt ttaatgttgc aggtgcttgt atggattata
     7141 ctttaggaca acgctatcca aaagcgactt tgcttataaa agttgcagct gaatgtgccg
     7201 caggaaaacg tgataaactt ttcatatttg gcgatgatta tgatacaaaa gatggtactt
     7261 gcataagaga ttttatccat gtagatgata tttcaagtgc acatttagcg gctttggatt
     7321 atttaaaaga gaatgaaagc aatgttttta atgtaggtta tggacatggt tttagcgtaa
     7381 aagaagtgat tgaagcgatg aaaaaagtta gcggagtgga ttttaaagta gaacttgccc
     7441 cacgccgtgc gggtgatcct agtgtattga tttctgatgc aagtaaaatc agaaatctta
     7501 cttcttggca gcctaaatat gatgatttag agcttatttg taaatctgct tttgattggg
     7561 aaaaacagtg ttaaaaaaac ttttttttat tttaagtaag gaagataaaa attttttatt
     7621 tttcttgctt gttttttcag tatttatttc ttttatagaa acttttgcaa tttctttggt
     7681 aatgcctttt atcactttgg ctagtgattt ttcttatttt gatcgtaata aatatttaat
     7741 cagcctaaaa gaatatctta atatccctgt ttttgaaatc attgtttatt ttggagtggg
     7801 gcttattgtt ttttatgtgt ttagagcttt gttaaatgcg tattattttc atcttttggc
     7861 aagattttct aaagggcgtt atcatgcgat cgcttataag gttttttcta aatttttaaa
     7921 tattaattat gaaaaattta ctcaaaaaaa tcaatctgaa attttaaagt ccattacagg
     7981 ggaagtttat aatctaagca ctatgatttc atcattttta cttttgatga gtgaaatttt
     8041 tgtagtactt ttgctttatg ctttaatgct tttgattaat tataaaatca ctttgttttt
     8101 aagtattttt atggtgttaa atgcctttat tttagtgaaa attttaagcc ctatcattaa
     8161 aaaagcagga gtaagacgcg aagaagcgat gaaaaatttc tttgaaattt taaatacaaa
     8221 tttaaataat ttcaaattta ttaagcttaa aaccaaagaa gatggagtat taagtctttt
     8281 taaagcgcaa agtgaagctt tttctaaagc aaatattacc aacgaaagcg tagctgcggt
     8341 gcctagaatt tatcttgaag gaataggctt ttgcgtactt gtttttatcg tggtattttt
     8401 ggttttgaaa aatgaaagtg atatttcagg tattttatcc acgatttcta tttttgtttt
     8461 agcgctttat cgcttaatgc caagtgcaaa tcgtattatt acaagttatc atgatttgct
     8521 ttattatcat tcttctttgg atattattta tcaaaattta agacaagaag aagaaaattt
     8581 gggcgaggaa aaattaagct ttaatcaaga gcttaaaatt tgcaatctta gctttggtta
     8641 tgagggaaaa aaatatttat ttaaaaatct taacttaaat attaaaaaag gcgaaaaaat
     8701 cgcttttata ggggagagtg gttgtggaaa aagtacctta gtagatctta tcataggact
     8761 tttaaaacca aaagaagggc aaattttaat tgatgagcaa gaattaaatg caaataatac
     8821 aaaaaattat cgccaaaaaa taggctatat cccgcaaaat atctatcttt ttaatgacag
     8881 tatagctaaa aatatcactt ttggagatgc ggttgatgaa gaaaaactta atagggttat
     8941 caaacaagca aatttagagc attttataaa aaatttacct caaggagtgc aaacaaaagt
     9001 gggcgatggg gggagtaatt taagcggggg acaaaaacaa cgcatagcta tagcaagagc
     9061 tttatattta gagcctgaaa tgttagtgct tgatgaagca acttctgcgc ttgatactca
     9121 aagtgaagca aaaattatgg atgaaattta taaaatttct aaagataaaa ccatgattat
     9181 tatcgcacat cgcctttcta cgataacaca atgtgataag gtttatcgtt tagaacacgg
     9241 taagcttaaa gaggagaaat gatgaaaata agctttatta tcgcaacttt aaattcagga
     9301 ggtgctgagc gtgctttagt aaccttagct aatgcacttt gcaaagagca tgaagtaagt
     9361 attattaaat ttcatgcagg agaatctttt tataagcttg aaaatgaagt taaagttaca
     9421 agtttggaac aatttagatt tgacacgctt tatcataaaa tcgcaagtcg ttttaagaaa
     9481 ttttttgctt taagaaaggc tttgaaagaa agtaagtctg atgtttttat ttcttttttg
     9541 gatacgacta atattgcttg tattgctgcg aaaatagggc ttaaaactcc actcattata
     9601 agtgagcata gcaatgaagc gtatttaaaa cctaaaattt ggcgtttttt aagaagggta
     9661 agctatcctt tttgtgatgc tttaagtgtg cttggaagca gtgataaggt gtattatgaa
     9721 agatttgtaa aaagggttaa gcttttatta aacccttgtc attttagcga tgaaatttct
     9781 tttgattcta gttttgaaaa ggaaaatttg gttcttttta tagggcgttt agatcacaac
     9841 aaaaaccctg taatgttttt aaaagctata gcgcatttgg ataaaaattt acaagaaaat
     9901 tataaatttg ttatagcagg agatggacag ttaagacaag aacttgaata taaggtaaaa
     9961 tctttaggaa taaaagttga ttttttagga cgcgttgaaa atgtcaaggc tctttatgaa
    10021 aaagcaaaag tgctttgcct ttgttctttt gtagagggtt tgccaacggt tttaattgaa
    10081 agtttgtatt ttgaggtttg tagaatttca agttcttatt ataatggtgc taaggattta
    10141 atcaaagata atcatgatgg gcttttggta ggttgtgatg atgaaatagc acttgctaaa
    10201 aaacttgaac ttgttttaaa tgatgaaaat tttagaaaag aacttgtaaa taatgccaaa
    10261 caaaggtgta aagactttga aatttctcat atcaaagaag aatggcttaa gcttatagcc
    10321 gaggttaaaa atgcctaaac tttctgttat agtaccaact tttaatcgtc aagttttgtt
    10381 agaaaaggct attaaaagca tacaaaatca agattttaaa gatttagaaa ttattgtaag
    10441 cgatgataat tctagcgatg atactaaaag tgtggtgcaa aatttacaaa aagatgatga
    10501 tcgcattaag tattttttaa atcaaaatta caaacaaggt ccaaatggca ataaaaacaa
    10561 tggcttagat caagcaagtg gcgagtttgt aactttttta gatgatgatg atgagctttt
    10621 atccggggct ttaagtacct tgatgcaaaa agcaaatgag ggttatgctc atgtttttgg
    10681 aaattgtttg atagaaaaag aaggaaattt aagcaaggaa tttagcggca agggcttgga
    10741 aaaagatagt gaaatttcta aaaaagattt tttaatggct aaatttagcg gagagttttt
    10801 ttctgttttt aaaaaatccc tacttgaaaa taagcgtttt aatgaagaat tttatggcaa
    10861 tgaagccacg ctttgggtaa atttatacaa agaaaaaagt ttttatatcc ataaggcttt
    10921 taggatttat agaattttta ggcaagatag cgtgacttta ggggcgagta aaaatgctta
    10981 tagggtgtat ttgggatatt tagagcttgc taaaatttta gaaaatgaac ttagaatgag
    11041 taaggataaa gattataaaa aaacttgtgc gagttattat aaaatggcag cttattatgc
    11101 aaaacttgca aaaaattata aagcccttta taaatgtttg tttaaaagcc taagtataaa
    11161 aatcaacgct cctgctttga tattactcat tttaagtata attccaaata atatgattga
    11221 aaaattatca aaaattcggg tggctttatg caaaaattag gcatttttat ttattcttta
    11281 ggaagtggtg gtgctgaaag agttgtggcg actttattgc ctattttaag tttgaaattt
    11341 gaagtgcatt tgatcttgat gaatgataaa atttcttatg aaattccaga gtgtcaaatt
    11401 cattttttag aatgttcaaa acctagtgaa aatcctattt tgaaattttt aaaactacct
    11461 tttttggctt taaaatacaa aaaactttgc agaaatttag gtattgatac agaatttgtt
    11521 tttttaaatc gacctaatta tatagcttta atggcaagaa tgtttggaaa caaaactcgc
    11581 cttgtgatca atgaatgcac tacgccaagt gtgatgtata tgaaaaataa ttttaattct
    11641 ttggtaaata aatttttaat ttctttgctt tacccaaaag ctgatttaat cttgcctaat
    11701 tctaagggaa atttagaaga tttagtgcaa aattttagta taagtccaaa aaaatgtgaa
    11761 attttataca atgccatcga tttagaaaac atagggcaaa aagcccttga agacatagct
    11821 ttaaaagata aatttatttt aagtgtaggc aggcttgata aaggtaaaaa tcatgcttta
    11881 ttaattcgtg cttatgcgag attgaaaaca gatttaaagc ttgtgatttt aggtgaaggt
    11941 gtgcttaagg atgagctttt agctttgatt aaagaattaa atttggaaga aaaggttttg
    12001 cttttaggat ttgataataa tccttataaa tacatggcta aatgcgaatt ttttgctttt
    12061 gcttctgtgt ttgaaggttt ttcaaatgtt ttaatcgaaa gtttggcttg ttcttgtgcg
    12121 gtggtttgca ctgatcataa aagtggtgca agagagcttt ttggcgatga tgaatttgga
    12181 cttttagtag aagtagataa tgaaaactct atgtttcagg gtttaaaaac tatgcttgaa
    12241 gacgataaat taagaaaagc gtataaaaac aaagctaaaa ctagggctaa agcctttgat
    12301 aaagtaaaaa ttgcacgcga tgctttgaaa tatttattag gataaaagat gttgaaaaaa
    12361 gagtatttaa aaaaccctta tttagttttg tttgcgatga ttgtattagc ttatgttttt
    12421 agtgtatttt gcaggtttta ttgggtttgg tgggcaagtg agtttaacga gtattttttc
    12481 aataatcaat taatgatcat ttcaaacgat ggctatgctt ttgctgaggg cgcaagagat
    12541 atgatagcag gttttcatca gcctaatgat ttgagttatt atggatcttc tttatctacg
    12601 cttacttatt ggctttataa aatcacacct ttttcttttg aaagtatcat tttatatatg
    12661 agtacttttt tatcttcttt ggtggtgatt cctattattt tactagctaa tgaatacaaa
    12721 cgccctttaa tgggctttgt agctgctctt ttagcaagtg tagcaaacag ttattataat
    12781 cgcactatga gtgggtatta tgatacggat atgctggtaa ttgttttacc tatgtttatt
    12841 ttatttttta tggtaagaat gattttaaaa aaagactttt tttcattgat tgccttgcca
    12901 ttatttatag gaatttatct ttggtggtat ccttcaagtt atactttaaa tgtagcttta
    12961 attggacttt ttttaattta tacacttatt tttcatagaa aagaaaagat tttttatata
    13021 gctgtgattt tgtcttctct tactctttca aatatagcat ggttttatca aagtgccatt
    13081 atagtaatac tttttgcttt atttgcttta gagcaaaaac gcttaaattt tatgattata
    13141 ggaattttag gtagtgcaac tttgatattt ttgattttaa gtggtggggt tgatcccata
    13201 ctttatcagc ttaaatttta tatttttaga agcgatgaaa gtgcgaattt aacacagggc
    13261 tttatgtatt ttaatgttaa tcaaaccata caagaagttg aaaatgtaga ttttagcgaa
    13321 tttatgcgaa gaattagtgg tagtgaaatt gttttcttgt tttctttgtt tggttttgta
    13381 tggcttttga gaaaacataa aagtatgatt atggctttac ctatattggt gcttgggttt
    13441 ttagccttaa aaggaggact tagatttacc atttattctg tacctgtaat ggctttagga
    13501 tttggttttt tattgagcga gtttaaggct atattggtta aaaaatatag ccaattaact
    13561 tcaaatgttt gtattgtttt tgcaactatt ttgactttgg ctccagtatt tatccatatt
    13621 tacaactata aagcgccaac agttttttct caaaatgaag catcattatt aaatcaatta
    13681 aaaaatatag ccaatagaga agattatgtg gtaacttggt gggattatgg ttatcctgtg
    13741 cgttattata gcgatgtgaa aactttagta gatggtggaa agcatttagg taaggataat
    13801 tttttccctt ctttttcttt aagtaaagat gaacaagctg cagctaatat ggcaagactt
    13861 agtgtagaat atacagaaaa aagcttttat gctccgcaaa atgatatttt aaaatcagac
    13921 attttacaag ccatgatgaa agattataat caaagcaatg tggatttatt tctagcttca
    13981 ttatcaaaac ctgattttaa aatcgataca ccaaaaactc gtgatattta tctttatatg
    14041 cccgctagaa tgtctttgat tttttctacg gtggctagtt tttcttttat taatttagat
    14101 acaggagttt tggataaacc ttttaccttt agcacagctt atccacttga tgttaaaaat
    14161 ggagaaattt atcttagcaa tggagtggtt ttaagcgatg attttagaag ttttaaaata
    14221 ggtgataatg tggtttctgt aaatagtatc gtagagatta attctattaa acaaggtgaa
    14281 tacaaaatca ctccaattga tgataaggct cagttttata ttttttattt aaaggatagt
    14341 gctattcctt atgcacaatt tattttaatg gataaaacca tgtttaatag tgcttatgtg
    14401 caaatgtttt ttttgggaaa ttatgataag aatttatttg acttggtgat taattctaga
    14461 gatgctaagg tttttaaact taaaatttaa gggttgaaaa tgagaatagg atttttatca
    14521 catgcaggag cgagtattta tcattttaga atgcctatta taaaagcgtt aaaagataga
    14581 aaagacgaag tttttgttat agtgccgcaa gatgaataca cgcaaaaact tagagatctt
    14641 ggcttaaaag taattgttta tgagttttca agagctagtt taaatccttt tgtggtttta
    14701 aagaattttt tttatcttgc taaggttttg aaaaatttaa atcttgattt tattcaaagt
    14761 gcggcacaca aaagcaatac ctttggaatt ttagcagcaa aatgggcaaa aattccttat
    14821 cgttttgctt tggtagaagg cttgggatct ttttatatag atcaaggttt taaggcaaat
    14881 ttagtgcgtt ttgttattaa taatctttat aaattaagtt ttaaatttgc acaccaattt
    14941 atttttgtca atgaaagtaa tgctgagttt atgcggaatt taggacttaa agaaaataaa
    15001 atttgcgtga taaaatctgt agggatcaat ttaaaaaaat tttttcctat ttatgtagaa
    15061 tcggaaaaaa aagagctttt ttggaaaaat ttaaacatag ataaaaaacc aattgtgctt
    15121 atgatagcaa gaactttatg gcataagggt gtgaaagaat tttatgaaag cgctgctatg
    15181 ctaaaagaca aagcaaattt tgttttagtt ggtggaagag atgaaaatcc ttcttgtgcg
    15241 agtttggagt ttttaaactc tggcgtggtg cattatttgg gtgctagaag tgatatagtc
    15301 gagcttttgc aaaattgtga tatttttgtt ttaccaagct ataaagaagg ctttcctgta
    15361 agtgttttgg aggcaaaagc ttgtggcaag gctatagtgg tgagtgattg tgaaggttgt
    15421 gtagaggcta tttctaatgc ttatgatgga ctttgggcaa aaacaaaaaa tgctaaggat
    15481 ttaagcgaaa aaatttcact tttattagaa gatgaaaaat taagattaaa tttagctaaa
    15541 aatgccgccc aagatgcttt acaatacgat gaaaataata tcgcacagcg ttatttaaaa
    15601 ctttatgata gggtaattaa gaatgtatga aaaagttttt aaaagaattt ttgattttat
    15661 tttagcttta gtgcttttgg tgcttttttc tccggtgatt ttaatcactg ctttactttt
    15721 aaaaatcact caaggaagtg tgatttttac ccaaaatcgc ccagggttag atgaaaaaat
    15781 ttttaaaatt tataaattta aaaccatgag cgatgaaaga gatgaaaagg gtgagttatt
    15841 aagcgatgaa ttgcgtttga aagcttttgg aaaaatcgtt agaagcttaa gtttggatga
    15901 gcttttgcaa ctttttaatg ttttaaaagg ggatatgagt tttgttggac ctagacctct
    15961 tttggttgag tatttgcctc tttacaataa agagcaaaaa ttgcgtcata aagtgcgtcc
    16021 aggtataaca ggatgggcgc aggtaaatgg tagaaatgct atttcttggc agaaaaaatt
    16081 cgaacttgat gtgtattatg tgaaaaatat ttcttttttg cttgatttaa aaatcatgtt
    16141 tttaacagct ttaaaggttt taaaacgaag tggggtaagc aaagaaggcc atgttacaac
    16201 agagaaattt aatggcaaga actgaaaaaa tttatattta tggtgctagt ggtcatgggc
    16261 ttgtttgtga agatgtggct aaaaatatgg gttataaaga atgtattttt ttagatgatt
    16321 ttaaaggaat gaaatttgaa agtaccttac ctaaatatga tttttttata gccataggaa
    16381 acaatgaaat tcgaaaaaag atttatcaaa aaatttcaga aaatggcttt aaaattgtca
    16441 atcttatcca taaaagcgcg cttataagtc ctagcgcaat cgtggaagaa aatgcaggaa
    16501 ttttaatcat gccttatgta gtgattaacg ctaaagctaa aatagaaaaa ggtgtgattt
    16561 taaatacttc aagcgtaatt gaccatgaat gtgtgatagg ggaattttct catgtgagtg
    16621 tgggagctaa atgtgcgggt aatgtaaaaa ttggtaaaaa ttgtttttta gggattaatt
    16681 cttgtgtttt gcctaattta agtttggcag atgatagtat tttaggtggt ggagcaactt
    16741 tagttaaaaa tcaagatgaa aaaggtgttt ttgtgggagt acctgcaaaa aggatgtaaa
    16801 ttgcatttta ataacaatct tgttgttcac tatatagtaa atccttcgcc tttggggtgg
    16861 attgtcatta atttactaac catatgtcta atatgctaca tatttccttt gaaaaattct
    16921 ttaaaacaca aaaaactttt tagtcttaaa gcaaatgtaa attctaaaaa tagtaggatt
    16981 ataaaatata caggtattgc tgcttttttg ggtggattaa taggaatttg gtataatttt
    17041 gaaggttttt atcaacttct ttttttcttt gaattagaaa atgaaaattt aaaaacactt
    17101 tggagtttgc aagtatcagt ttcttctgtg ataacaggta tgttattatt gttgatatat
    17161 gttataaatt tagcaatggt ttgtgaaaat ggaatttata tagttagtaa atttaatctt
    17221 ttttatatgt attttataaa acgagaagat ttggaaattg ttaaaataga aaaaatgaaa
    17281 tttttaaatc aagttgaagt ttgttttgtt atcaaaacaa aaaataaaat actccttaaa
    17341 tgctttgaaa gtatttataa aaaagaagac ttagaaaagc ttaaaaattg gtatgaaaac
    17401 aagctttgac tataaaaaga atttaaatat ttgaatcttt gtaaattttt ttaggtaaaa
    17461 tagagtcaat ttataaaaat tttgttttac acaaaggata aatcatgaga ttttttcttt
    17521 ctcctccgca tatgggtggt aatgaattaa aatacataga agaagttttc aaaagcaatt
    17581 atatagcacc tttgggtgaa tttgtaaatc gctttgaaca aagtgtcaag gcttacagta
    17641 aaagtgaaaa tgccttagct ttaaattcag ccacagcggc tttgcattta gctttaaggg
    17701 tggcaggggt aaaacaagat gatattgttt tggcttcttc ttttactttt atcgcttcag
    17761 tagcacctat ttgttatctt aaagcaaaac ctgtatttat agattgtgat gaaacttata
    17821 atatcgatgt agatttatta aagcttgcta ttaaagaatg tgaaaaaaaa ccaaaagcat
    17881 tgattttaac tcatctttat ggcaatgcgg ctaaaatgga tgaaattgtt gaaatttgca
    17941 aagaaaatga aattgtttta atcgaagatg ctgctgaagc tttaggaagt ttttataaga
    18001 ataaagcttt aggaactttt ggagaatttg gagcttattc ttataatggc aataaaatta
    18061 tcaccacttc aggtggaggt atgcttatag gaaaaaataa agaaaagatt gaaaaagcaa
    18121 gattttatag cactcaagct agggaaaatt gtttgcatta tgaacattta gattatggtt
    18181 ataattaccg cttaagcaat gttttaggag ctattggcgt agcgcaaatg gaggttttag
    18241 aacaaagagt gcttaaaaaa agagaaattt atgagtggta taaagaattt ttaggagagt
    18301 gttttagctt tttagatgaa ttagaaaatt caagaagcaa tcgctggtta agtacagctt
    18361 tgattgattt tgataaaaat gaacttaatt cttgtcaaaa agatataaat atcagtcaaa
    18421 aaaatattac tttgcatcca aaaatttcaa aactcataga agatttgaaa aatgaacaaa
    18481 tagaaacaag accattatgg aaagctatgc acgctcaaga agtatttaaa ggagctaagg
    18541 cttatcttaa tggcaatagt gagttatttt tccaaaaagg aatttgtttg ccaagtggca
    18601 cggcgatgag taaagatgat gtttatgaaa tttcaaaact gatcttaaag agcataaagg
    18661 cttaaaatga ttttttataa aagcaaaaga ttagcatttt ttttaacttc agatattgtt
    18721 ttaattttac ttagcgttta tctggctttt tctttgagat ttagtggaga tattccgagt
    18781 attttttatc atggtatgat ggtttctgct attattttgc ttgttttaaa actttcattt
    18841 ttgtttgttt ttagaattta taaagtagct tggagatttt tttctctcaa tgaagcaaga
    18901 aagattttta tcgctttgct tttagctgag ttttgttttt ttcttatttt ttattttttt
    18961 agtgattttt ttaatccttt tccaagaagt gctattgtga tagattttgt tctttcttat
    19021 atgtttatag gtactttaag aattagcaaa agaatgcttg tggattttaa accttctaga
    19081 atgaaagaag aagaaactcc ttgtattgta gtaggggcaa cttctaaggc tttgcatttg
    19141 ttaaaaggtg caaaagaagg ttctttaggg ctttttcctg taggcgtagt tgatgcgaga
    19201 aaagagctta tagggactta ttgtgataaa tttattgtag aagaaaaaga aaaaataaaa
    19261 tcttatgtag aacaaggggt aaaaactgcc attattgctt taagacttga acaagaagag
    19321 cttaaaaaac tttttgaaga acttgtagct tatggtattt gcgatgtaaa aatattttct
    19381 tttacaagaa acgaagcaag agatatcagt atagaagact tgcttgctag aaaaccaaaa
    19441 gatttagatg atagtgctgt ggcggctttt ttaaaagata aggtagtttt ggtaagtgga
    19501 gcaggtggaa ctataggcag tgaactttgt aagcaatgta ttaaatttgg tgctaagcat
    19561 cttatcatgg ttgatcatag tgagtataat ctttataaga tcaatgatga tttaaattta
    19621 tataaagaaa aaattactcc tattttactg agtattttag ataagcaaag tttagatgag
    19681 gtattaaaaa cttataaacc cgagcttatt ttacatgcag ccgcttataa acatgtgcct
    19741 ctttgcgaac aaaatccaca ttcagcagta atcaataata ttttaggaac taaaatttta
    19801 tgcgacagtg ctaaagaaaa caaagtagct aaatttgtga tgataagtac agataaagca
    19861 gtacgaccaa caaatattat gggttgcact aagagagttt gcgagcttta tactttaagt
    19921 atgagtgatg aaaattttga agttgcttgt gtgcgttttg gtaatgtttt aggttctagt
    19981 ggtagtgtga taccgaaatt taaagcacaa attgccaata atgagccttt aactttaacg
    20041 caccctgata tagtgcgtta ttttatgctt gtggctgagg cagtgcaact tgttttacaa
    20101 gctggagcta tcgcaaaagg gggagaactt tttgttttgg atatgggtaa gcctgtgaaa
    20161 atcatagatt tagctaaaaa aatgctttta ctttctaatc gcaatgattt agaaattaaa
    20221 atcacaggct taagaaaagg tgagaagctt tatgaagagc ttttgattga tgaaaatgat
    20281 gctaaaacac aatatgagag tatttttgta gcaaagaatg agaaggttga tcttgattgg
    20341 cttaataaag agatagaaaa tttacaaata tgtgaagata tttcagaggc tttattaaag
    20401 attgtacctg aatttaaaca caataaagaa ggtgtataat gtatataaaa gatatacaaa
    20461 gatttgaaga taatcgctat cgtgctagag cttatatgag ttatatttta acaagaaatc
    20521 tgcccaataa acttcctgat attcaccttg aaacgattaa aacagctttg gataaaatag
    20581 ctcatgaagt tgttgttttt gatgctttgt atattttaga tatttcaggc atgcaaatag
    20641 aaaatgcgat ttccttaaat aaagctcatg aaatagggca gggtgaggat agaagtactc
    20701 gttcttattt ttatagagct gtaaaattaa gacgatgtgt tttgagcgat ccttatcctt
    20761 cggttttaaa taatgagctt tgcgtgacag cttctatgcc aatttacgat gataaaaata
    20821 acttgctttt tgttgtttgt attgatatca agcttgaaga tattttaaag attattcaag
    20881 caggaaaatt tgaatttgtt tttactcagt ttagtcgttt ggtatatttt tgcttcgcac
    20941 tggttttatt tgtgattact tgttttttat ttcaaaaagg tttttttagt ctttttgata
    21001 atcaagctat aggtatagaa catatgtttg aaagtaccat cgctataact ttggctttag
    21061 ctatttttga tttggcaaaa actttgatcg aacaagaagt attaggaagg acgaaaaaag
    21121 aagaaggtgg aattcaaaaa actatggtga gatttttggg ttctattatc attgctttag
    21181 ctatagaagc tttgatgttg gtatttaaac ttgctattgg tgatctttct cagatgattt
    21241 atgcgattta tcttatcggt ggagtgagct tgcttctttt aggtttaagt gtatatttat
    21301 ttacggttaa gtataaaaat aataatattt gagtaaaaat ttaagtaaaa gatgatataa
    21361 tgctgttttt taaaattttt tagcttgatt aataaggcta aaaagggtaa aataaaacta
    21421 taaaaacttt gaaaggacga aattgtgaaa ttgttagttg ttgatgacag ttctactatg
    21481 agaaggatta ttaaaaatac cctaacaaga cttggacacg atgatgtttt agaagctgag
    21541 catggcgttg aagcttggga tttattaact aaaaatgaag atgtaaaagt tttaattaca
    21601 gattggaata tgccagaaat gaatggcttg gagttggtaa aaaaagtaag agcagagaaa
    21661 aaatatgaag atatgcctat catcatggtt acaactgagg gcggaaaagc tgaagtgatt
    21721 actgctttaa aagctggcgt aaataactat attgtaaaac cttttactcc acaagtttta
    21781 aaggaaaaac ttgaagatgt tttaggaaca ggaagtggag aaggtgcagc tgagtaaagg
    21841 ctgattttta aaattctaaa tgcaaaaaaa atattatgaa ttgttcttta ttgtagaaga
    21901 gcggtataaa aatttatttc ttgattttgc ttttgattta ggtatagaag ccatagaaga
    21961 gaaagataat ggtgtttaca ttagatccca tgagagttta gaagagtttt catgggcact
    22021 tgaaatattt gctcaaaaac ttacaactac tttcaattta aaccataaaa ttatttctaa
    22081 tttaagtctt gtagagaaag aaaacaagga ctggatacaa gaatataaaa aaggcataaa
    22141 acctatctta gtggataatg tttacatcca tacaacttgg caagaagaaa agaagaattg
    22201 tataaatata aagattaatc cagccttagc ctttggctca ggacatcacg aaagcacata
    22261 ttcttgtgta aaatttttac aaaaattttc taaaagtaaa ttaagagctt tagatcttgg
    22321 ttgtggtagt ggaattttgg gtattattat ggcaaagttt ggttgtaatg ttgaaatttg
    22381 tgataccgat gagttggcta ttgatagttc tttagaaaat gcaagattaa atggtgtcga
    22441 ttttcacaag gcttggtgtg gatctataga taaagcaaat ggtttatata atctaattgt
    22501 tgcaaatatc attgcagatg tgattttaat tttagaaaaa gatattaaaa accatttaga
    22561 agataatgct atacttattt tgtcaggaat tttagataaa tattcaacaa gaattaaaga
    22621 aaaatttcaa gatttggaac tcattgatga aatgcaaatc aatgagtggt gtagttttgt
    22681 atataaaaat aataaaaaag gataagtaat gaataataat acccaaaata ataagggtaa
    22741 tccgcagggt aataattttt ttaacaaaaa tcccattttt atttttgcga tttttgcaat
    22801 tgtaatgata attattttta agggattttt tgatggcaat ggttcttttg gcggggcatt
    22861 gaatggcaat gaagtaaata aaaatgtccc ttattctgag ttaaaaaagc ttattgaaag
    22921 tggacaaatc aatcaagtta gtataggaca aacaacaatc aaagcgattt caagctctca
    22981 caatactgtt tatacagcaa aaaaagttaa tgatcctgag cttgtgagtt tactagatag
    23041 taaaaatatc gcttatggtg cgtattctga aacaaattgg tttacggata tacttttttc
    23101 atgggttttg ccagtattta ttttctttgg tatttggatg tttttggcaa gtcgtatgca
    23161 aaaaaatatg ggaagttcta tattgggtat aggaagttct aagaagcttg taaattcaga
    23221 aaaacctaaa gtaaaattta gcgatgtagc tggtgttgaa gaagctaaag aagaagtaaa
    23281 agaaattgta gattttttaa agtatcctga aagatatatt aaattgggag ctaaaattcc
    23341 aaaagggctt ttacttgttg ggcctccagg tacaggaaaa actttgcttg caaaagcagt
    23401 tgcaggtgaa gctgatgtgc cgttttttag tgtttcaggt tcgtctttta tagaaatgtt
    23461 tgtgggtgta ggtgcttctc gtgtgagaga tttatttgaa aatgcaaaaa aagaagctcc
    23521 tgctattgtt tttatagatg aaatagatgc tattggtaaa agtcgtgcag caagtggcat
    23581 gatgggtgga aacgatgaaa gagagcaaac tttaaatcag cttttggctg aaatggatgg
    23641 ctttgggaca gaaagttccc cagtcattgt tttagcagca acaaatcgcc cagaagtttt
    23701 agatgcagcg cttttaagac caggaaggtt tgatagacaa gttttagttg ataaacctga
    23761 ttttaaaggt aggtgtgata ttttaaaagt gcacatgaaa gatgtaaaaa tctccccaaa
    23821 agttaaggta gaagacatag cacgcttaac cgcaggactt gcaggagctg atcttgcaaa
    23881 tattattaat gaagcggcac ttttagcggg tagggattct aaaaaatatg tagaacaaaa
    23941 tgatttagtt gaagctgttg aaagagctat agcaggactt gagaagaaat cacgtcgtat
    24001 taatgaaaaa gaaaagaaaa ttgttactta tcatgaatgt ggtcatgctt taatcgctga
    24061 aactaccaaa ggtgcaaaac gtgtaagtaa ggtttctgtg attccgcgtg gtcttgcggc
    24121 tttaggttat actttaaata ctcctgagga aaataaattt ttaatgcaaa aacatgagct
    24181 tatagctgaa gtagatgtac ttttgggtgg tcgtgcagct gaagaagtgt ttataggtga
    24241 aatttcaacg ggtgcaagta atgatttaga aagagcaacc gatatcataa aagctatgat
    24301 ttctatgtat ggtatgagtg aaattgcagg acttatggta cttgaaaaac aaagaaatac
    24361 tttcttaagt ggtggacaaa ctatcaaaga ttattctgaa aagatggcag aatctttaga
    24421 tgattatgta aagaaaacct tggatgaacg ctataaagat gttaaagata ctttaaatac
    24481 ttataaggga gcgattgaga ctatggttgc agccctttat gaagaagaaa ctattgaagg
    24541 taataaagtg cgcgagatta ttaaagagtt tgaggatcaa aatagtctac caactcgttt
    24601 gcaagaactc gaagaagtta aaactgaagt taaagtagaa gaatgaaaga ttttattgca
    24661 aaagatggat atttaagtct tattatttta agcttaattt ttatttttgt gtggattttt
    24721 tattcttttt ccatcttgct attagcatta attgtaattt gtatttttct ttttagagcg
    24781 cccaaaagag aacttgtttg tagtgatgaa aaagctattt ttgcacctat ggatggtagg
    24841 gttactaaaa tagaaaatat tcatcataaa gatttgggtg aatgtgttga aattactatt
    24901 aaaaatgctc tttatgatgc tgggaatttt aatacacctt ttgcaatgtc tataatagat
    24961 attcgtttac gacatgggct ttttttgtgc agtgaattaa aatctgcaaa aatgatgaat
    25021 gaaagagctt ttattttggc aaaagttaaa gagagtaaaa tgatagcctt gcgaatctat
    25081 gcaggttctt ttgatagaaa attaaagctc gataatattt ctcatgattt aaaagcagga
    25141 gatagaatgg gttttttaat taatggctct ataagtttac ttttaccaaa agatactaga
    25201 atttatatag gcttaaatga tgaaattaaa gcaggttcat tgctaggcta ttttgcgtaa
    25261 ggaaaaataa tgaataacag accgcaacta atttatattt tacccaatct ttttacagct
    25321 gcttcagctt ttttaggggt tatttctatt atagcttcaa tacatggaaa ttattataca
    25381 gctttgattt atattatttt atctttgatt tgcgatgggc ttgatggccg tgttgcaaga
    25441 cttacaaatt ctacttcaaa atttggggta gaatttgatt ctttggctga tctagtagct
    25501 tttggagttg ctccagcggt tcttttttat atggctatag gttatgattt tggaaaactt
    25561 ggatctttga ttacagcttt ttttgtggtt tttggagcta ttcgtttggc gagatttaat
    25621 gttaccacag gcacttatga accctccgtt tttataggtc ttcctatacc tactgcagca
    25681 gttgtgagtg ctatatggac ttatgcgttt atcagttatg attttttaaa gccttatggc
    25741 gtagtttttt tggtgcttca agcaatttta gggcttttaa tggtaagtaa tatacgttat
    25801 cctagtttta aaaagcttga ttttaatcgt tctagtgttt taaaagtttt gattatttta
    25861 attataatat tttcattttt atatctttac cctcttgaaa gtttagtaat tttagcaagc
    25921 ttgtatgtgc tttatggaat tattcgggtt ttatatacca ttatcgtttc aaaatttaag
    25981 ataagaaatc aagagtaaaa tttttcaatg acttcgcatt cttcttgagt gaagccagct
    26041 ttgattcttg cttgaatgtt aagttttttt cccgcaagag agaattgttt aaacgttttg
    26101 caaagctcaa taaaatcata cctgttttga tttgcaaatt tccaccaagt atctcctttt
    26161 ttaacgtgtt ttatttcatc attaagtata atttcaagat attccattag aagattttta
    26221 atggaatgat tggaactttg aagtttttga acaacaaagg ggttggcatc aagcccttta
    26281 gcttctaaac ctctatgaac tactcccatt ctaaagctta aagagtcttt tgtagcttct
    26341 agagcagatt ctaaattatc atgcactgga aaatttccat atttgtaacc aagttcttta
    26401 agtgctgaat ttaaaagttt gaaatgttta atttcctcac ctgctacctc cagccaatcg
    26461 taataaaatt gcaaaggtag atttttaaag cgataactcg catctaaagc caggttaatt
    26521 gcattaaatt ctatatgagc gactgaatga attattttag caagcgcatg agttgaattg
    26581 acaaatttag gccttcttat acgcgtagga tgaagcaagg taatttgttg tgatgtattt
    26641 tttttgaaaa tgctttgatg ctcgtgatta aaattaaatt tgtggctttt aaagtcttca
    26701 taaaaatttt gaaaagagtg aaattttata gttatatttt tttcatataa aatatcttga
    26761 ag
//
LOCUS       DAPIWJ010000010        26688 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.010, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000010 DAPIWJ010000000
VERSION     DAPIWJ010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 26688)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26688)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26688
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.010"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(61..885)
                     /locus_tag="RJ259_000319"
     CDS             complement(61..885)
                     /locus_tag="RJ259_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDV7366061.1"
                     /translation="MPQLSIIIPLFNSCNFISRALQSCINQTLKDIEILIIDDKSKDN
                     SLNMVLEFAKKDPRIKIFQNEENLGTFASRNLGVLHSSSDFIMFLDSDDFLTLDACKI
                     ALKEMKKGFDLLCFDAFVHRVKTKQFYRFKQDEFFNQKEFLEFLSKQRHFCWSVWAKC
                     FRKDIILKSFEKIKIDERLSYGEDVLFCYVYFMFCEKIAVFKTCIYHYEFNPNGRYEN
                     KNKEILWQNYQDKKKSNELVKKLCLNFKNNDFHKKLFEVLEKEEFDLQRRVDEARN"
     gene            944..1903
                     /gene="waaF"
                     /locus_tag="RJ259_000320"
     CDS             944..1903
                     /gene="waaF"
                     /locus_tag="RJ259_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HDV7366062.1"
                     /translation="MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTAL
                     FKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFAFRSAFSSKIILHILKTKQRYFF
                     DKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
                     SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCN
                     KTTIKTLCQNIAFCDLFITNDSGPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLV
                     HLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL"
     gene            complement(1884..2444)
                     /gene="gmhA"
                     /locus_tag="RJ259_000321"
     CDS             complement(1884..2444)
                     /gene="gmhA"
                     /locus_tag="RJ259_000321"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HDV7366063.1"
                     /translation="MINLVEKEWQEHQKIVQASEILKGQIAKVGELLCECLKKGGKIL
                     ICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV
                     EALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP
                     SDDTARIQEMHILIIHTLCQIIDESF"
     gene            complement(2441..3826)
                     /gene="rfaE1"
                     /locus_tag="RJ259_000322"
     CDS             complement(2441..3826)
                     /gene="rfaE1"
                     /locus_tag="RJ259_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HDV7366064.1"
                     /translation="MLEFLSQQKPKILIIGDFMVDNYTWCDCSRISPEAPVLIAKTLK
                     EDKRLGGAANVYANLKSLGADVFALGVVGDDESGKFLQENLKGEFLIQKGRKTPFKNR
                     IMAHNQQVLRLDEEDISEILLENELIALFDEKIKDFKAVVLSDYAKGVLTPKVCKAVI
                     KKAKALNIPVLVDPKGSDFSKYSGATLLTPNKKEALEALKFENLEGENLEKGIKKLKE
                     DFSLRYSIITLSEAGIALFDEGLKIAPAKALEVYDVTGAGDSVIAVLAFCLANEIEIF
                     KACELANEAAAVVVSKIGSVSVSFDEIKSFKRVDFEKKIKSKEELLVLLKQNNKKIVF
                     TNGCFDIVHFGHIKYLDKAKRLGDVLIVGLNSDASVKRLKGESRPVNSEFQRACMLAA
                     FYFVDFVVIFDEDTPLELISFLKPDILVKGADYKDKLVVGADIVSRVELIDFEEGFST
                     SKIIEKIKDKK"
     gene            complement(3819..4772)
                     /gene="rfaD"
                     /locus_tag="RJ259_000323"
     CDS             complement(3819..4772)
                     /gene="rfaD"
                     /locus_tag="RJ259_000323"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HDV7366065.1"
                     /translation="MKIAITGGAGFIGSQLALNLQEKHEILIIDKMRSSATFENGNLQ
                     SFGHFKNLLEFDGELFAGDINDEKVLKKIEDFKPEIIFHQAAISDTTVFDQTKVLQTN
                     LNTFKDFIELSIDLNAKLIYASSASVYGDAKSPQTVGKDEEPKNPYAFSKLMMDKLAK
                     KYYDKAHLVGLRYFNVYGKGEFYKNKTASMVLQFGHQILAGKNPRLFEGSDQIYRDFT
                     YIKDVISANLIALDSKCGVYNVGSGKARTFQDIVDILQKELKTDLPCEYIPNPYVKSY
                     QFHTEAKLDQTWNYQPKFSLEEGIKDYLGEIKRLFEKEVNA"
     gene            complement(4773..5333)
                     /gene="gmhB"
                     /locus_tag="RJ259_000324"
     CDS             complement(4773..5333)
                     /gene="gmhB"
                     /locus_tag="RJ259_000324"
                     /EC_number="3.1.3.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-alpha-D-manno-heptose-1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HDV7366066.1"
                     /translation="MFIFFLKKLYYNVFMKTKALFLDRDGVINIDKKYVYKIEDFEFC
                     DGIFELCRYFLARNYLLFIATNQSGIARGYYKESDFFKLCDYMLKEFAKQDIKIDKIY
                     HCPHLEGCECRKPKAGMLLKAKDEFDLDMKNSIFIGDNLSDMQAGLNADIGTLILVNE
                     EKKEGDFFRQFKNLKEILNFFKEKDI"
     gene            5415..5717
                     /locus_tag="RJ259_000325"
     CDS             5415..5717
                     /locus_tag="RJ259_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HDV7366067.1"
                     /translation="MKKLLVVSALACLGVSAFAADGATLFKKCAVCHGANADKVYLNK
                     VPALKTLSSAERLQYMKEYSEGKRNAYGQGAIMKLNLKGLTEEDFKAIEAHIETLK"
     gene            complement(5740..5946)
                     /gene="ccoS"
                     /locus_tag="RJ259_000326"
     CDS             complement(5740..5946)
                     /gene="ccoS"
                     /locus_tag="RJ259_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HDV7366068.1"
                     /translation="MNSIIMMMIGVSILAFFIILATLLWGIKNKQFDDDYKFTTLNDD
                     EDSLRDTIELERRKKEALDKKRLS"
     gene            complement(5943..8300)
                     /locus_tag="RJ259_000327"
     CDS             complement(5943..8300)
                     /locus_tag="RJ259_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HDV7366069.1"
                     /translation="MIMKCEHCKLDYKQAQMIEYKGKIFCCKGCESVWEILHESGLDE
                     FYEKLGNQTLSPVNFQNEMKNYDEFITKTKEGFSEIYLMIHGIECAACVWLNEKILTK
                     QEGILELDINHLNHKARIVFDEQSISLVQILRLIESIGYKASAYDASKASKKADLLKR
                     EFYSKLVVAIACVMNIMWIAVAKYAGFFSGMDKDTKDILNFAEFILCSPVLFYTGSHF
                     YKSAFKTLNMHSLNMDVLVISGASLAYVYSLWAMFFRVGEVYFDSVAMIICFVFIGKY
                     LEMFSKKRALDTIDGLNDFLQNEVLVFDGKEFVSKEVQKVCLGDRILLKTGDKILIDG
                     ICKSGEMSVDTSSLNGENTPKLIQKEDEIFSACIVLDGSVEYEATKLYKDSKLSQIIQ
                     LLELASSKKAKLESLVNSLSAYFSRTVLLIAFICFAFWFFYKEESFEISLVNAIAVLI
                     IACPCALALATPVSNLVALGRALKKHILFKSSSVIEDLSKCDCVVFDKTGILTKIELE
                     LKEVFLDKALDLNELYNFVKLSKHPISQNIALYLKQKGAKDLNLDFKKLSSIQAKGLS
                     AELNEGLLLGGSSKFLQEKGIATKEFDNTHFIFAKEGKILAFFEFDSVLREGAKELIV
                     YLKKEKKELMILSGDHQKAVEKIARKLEIQNYQASCLPEDKMKTIENLSKNYKVLFVG
                     DGVNDALALKYASVSMTLREGSDLAIESSDVLLLKNDLLSLKKAIKLSKNTFKIIKQN
                     LAFSLFYNACTIPLAFLGMINPLFAAISMSFSSIIVVLNALRIKE"
     gene            8409..9707
                     /gene="rho"
                     /locus_tag="RJ259_000328"
     CDS             8409..9707
                     /gene="rho"
                     /locus_tag="RJ259_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HDV7366070.1"
                     /translation="MEKEKKQHQRTHVPVEGYKIEELKLLDLENLVKIANECEIENPR
                     EFRRQELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQ
                     IKKFALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTE
                     KIKLEYDAMKLTGRVLDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEMHL
                     IVLLVDERPEEVTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVII
                     LLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATAL
                     IDTGSRMDDVIFEEFKGTGNSEIVLDRNIADRRIYPAINIIKSGTRKEELLQGVANLQ
                     KIWAIRSAISQMDDVEALKFLYSKMLKTKDNVELLSIMNE"
     gene            9711..11246
                     /locus_tag="RJ259_000329"
     CDS             9711..11246
                     /locus_tag="RJ259_000329"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HDV7366071.1"
                     /translation="MLQALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSG
                     LRGSGKTSSARIFSRALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLED
                     IQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLK
                     LPATVLSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLT
                     LLDQAIIFCQNEISISKITDMLGFLDPQKIKTFYQAILTKDKEKVFAYLEELQDYEAS
                     SVIDEMLFYLKESFFAKSTEFSTLIYERFFRILSKAKNMLCDDDGFTLCVMAFMMMEA
                     SHLKEIDAQIQEIKQENMTNITPRITPAPIIPNLEKKIEKNAYEILLDSIYDRDFNLA
                     ECFKQSTKFISFENNTLNISSNAQGQNRDTLNKGFKLIQELFKAKFGENAKINVQKAL
                     TIDENKLQSLTQELPNNENKNIDIQSSINMLKEGAKKFDPQEDLKEALKDCFGNPQIQ
                     NID"
     gene            11326..13227
                     /locus_tag="RJ259_000330"
     CDS             11326..13227
                     /locus_tag="RJ259_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HDV7366072.1"
                     /translation="MQRRDFLNGMALAVVAGMTPLQLLYGKDSKIEDFTKEYYPPNLL
                     GLRGSNNKSYKYAHMLRDGDKFGFSSIKPKENYDLVIVGAGISGLAAACFYQQKFGEN
                     KKILILDNHDDFGGHARRNEIQLDEGTILSYGGSESFQSPKALYSKEVIELLKSLGVS
                     IDELAKRFDVNFYPDLKLSRGVYFSKENFGVDKVVNGNPRKVICDDIPDSKNNGKSIE
                     NFIKDFPMTSKDKRELISLFKSNKDYLKGLSKEEKEEYMAKTSYKKFLEEKVKLSQKA
                     ITFFEGMTDDFLALGIDAISCEDARISFLPGFDKLGLDPIEGEALAEMEEPYIYHCAD
                     GNATVARLMVRKLIPTVSQKGKDMDDITLAHFDYSKLDDSNNKVRLRLNSTVIHVENT
                     KNGTLISYINQGKKYRIKAKNVVMANYNNMIPYIIPSLPKEQKEALSKNVKTSLLHTK
                     VIISNWEPFIKLGVHEIYSPKMPYARTKLDYPVDMGGYHHPRDPKKPICIHMVCSPLA
                     LANIQGIDLEGLDARDRARVGRNLLFTMSFEEHEKIIRGQLQGMLGTAGFNHEKDILA
                     IVVNRWGHCYSYTENSLYDDPKIAEQTRLIARKPFGNIVIANSDSDWSAYMHSAIDQA
                     YRAINEIKA"
     gene            complement(13217..15322)
                     /gene="copA"
                     /locus_tag="RJ259_000331"
     CDS             complement(13217..15322)
                     /gene="copA"
                     /locus_tag="RJ259_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase CopA"
                     /protein_id="HDV7366073.1"
                     /translation="MEELRIKIGKMTCVNCSNAIERACKKIDGVKDASVSYVNSSGVF
                     LLEDQKKRKDIIAKIKNLGFEILEDEQSLNAYKAKKHLELRKNLLLSIVLSVIIMYFE
                     MFVKSSFSQNIQMALSFFGIFYCGRDFFSHAFLGFKSKNLDMNTLVALGTLSAFVYSF
                     LVYLQIFKEEDLYFSGAMMIISFVLLGKYLESKAKFKAQDYQRILENIDTKKTKILLE
                     DESIKEIPSSFVKSGDVLLVKEGESIVADGVVLLGSAELDMSFLNGEFLPVLKKEGDE
                     VQAGGVVLNGALRIKANKKAMDSTLEQIKNLVFEAGNIKSPLANLADQISKYFVGGII
                     FFAFLVFVFWAAKTDLNTAFLHACAVLLISCPCALGLATPIALVVASTNAAKNFILIK
                     NPAALEKLALVKYAFFDKTGTLTKEKLSVFKHNLSKDDFDKLCQIESLSSHPIAKALH
                     KDQICDLKGEGRVIVGSGIKYKEDSDIYLAGSAQFLHENEIDTKESDIFFDSFKEYVR
                     VYFAKNKKCLGGVLLSNALKDEAKELVLNLKEQNLKTFILSGDHVKNVEKIAKELQID
                     EFYAQLKSEEKLQIIQKFEKTLFVGDGINDAAALSAASVSISFSKANELAKKTGDFIL
                     IKDDLSAIFKCFKLAKKTRSIIKLNLFWAFIYNVLCIPIAAGFVPFIALSPHIAALAM
                     CFSSVTVVFNSLRLRKSKP"
     gene            complement(15322..15516)
                     /locus_tag="RJ259_000332"
     CDS             complement(15322..15516)
                     /locus_tag="RJ259_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal transport/detoxification protein"
                     /protein_id="HDV7366074.1"
                     /translation="MKFKVKNVNCMNCVNLIKNSLEDEFGNIEVDLEQKILSLNLEEN
                     QVSNFTKEFQDLGFEIVERL"
     gene            complement(15506..16456)
                     /gene="czcD"
                     /locus_tag="RJ259_000333"
     CDS             complement(15506..16456)
                     /gene="czcD"
                     /locus_tag="RJ259_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter CzcD"
                     /protein_id="HDV7366075.1"
                     /translation="MYKFLSHEPLANKSCHHNHEEHSHEHHHSHADARSVDKKILKIS
                     LLMTFSMMLVQFIYSILSNSLALLSDTLHMFSDVFALALSFLAIIAVEKWQDHQKTFG
                     YFRLEVLVAFINALTIILSALFIIYEAIEKFINPKEIDAKTMIIVAILGFLVNGINAL
                     MMFKGANLENVNMKSAFLHMMSDLLGSLAVIIGGIVVYFSDIVYIDTILAIVLSILLL
                     RWAIILLKQSANVLLESSPVDIEKVRQVLLLNPSVDEVVDLHITQITNKMLVASMHLK
                     VRVCNLKEFEKLSQDLSHKLLHEFEIGHITIQPIRSENEI"
     gene            complement(16532..16795)
                     /locus_tag="RJ259_000334"
     CDS             complement(16532..16795)
                     /locus_tag="RJ259_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HDV7366076.1"
                     /translation="MLCPVCNVDLVMSDRSGVEIDYCPKCRGVWLDRGELDKIIERSV
                     PNTANFNQAPRQESRYNDSAYHQHNDYYKKKKKESWLGELFDF"
     gene            complement(16865..17359)
                     /locus_tag="RJ259_000335"
     CDS             complement(16865..17359)
                     /locus_tag="RJ259_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HDV7366077.1"
                     /translation="MIEFILRDMFFAAVAGFGFAYACNPPLKTLILSALLAAIAHGLR
                     FTLVEYFHFQTLAIATFVASFCIGCLGIVLAKIIKTPAEIIAFPALIPMIPGIYAYKA
                     ILYLISFIRSDDLKAKSEFLVQFFDYFFTTVSVTLALAIGVSVTLLIFFEQSFMMTRH
                     AKKH"
     gene            complement(17356..18132)
                     /locus_tag="RJ259_000336"
     CDS             complement(17356..18132)
                     /locus_tag="RJ259_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HDV7366078.1"
                     /translation="MEKPDIQRLTNFLIIYTKTLLGAGTYTARVAKCVGRIAEVYGYE
                     ININFFFHHITLNVVDMDDNSIQRTYVIPNHHAHVNFKLIFDLSALSWAIYDHKYDLE
                     KAKVVFGQISQQKKHSYLLNLLFVSMANSAFCRLFGGDFGAGNLVFFATFVGLLLRYI
                     LTKAKIDLRIQYILCSFISSWFVFFGLDMGYTNTSDVALGSSILYLIPGVFFINSVID
                     ILKDHILMGLSRIISVAILICCIALGIYMTLSISDFGILR"
     gene            18199..19125
                     /locus_tag="RJ259_000337"
     CDS             18199..19125
                     /locus_tag="RJ259_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HDV7366079.1"
                     /translation="MAKIGIVGLGYVGAASAYSIVIQGICSELYLYDIKQDLALAHAR
                     DLEDMSAIHFSYTKIFHVPNLENLASCDIIILAFRKESLKELPSRLVELKNNILELKD
                     IVLTLKNANFKGKYIVATNPNDTITYYTQVLSQLPKNHVFGSGTNLDSSRLKKLLAKD
                     LNINSKDIFACMIGEHGDSQFAALSNASVLGQNLLDFYKQKLGKDLDIQELEKAVISE
                     GYFIYERKGRTEFGIGTSCANLAKAILEDRKSLHPVSVVFDDIAFSMPAIIGKDGIEK
                     VFELKFNEKEKIKLENSKQQIKNAIQSVKDKI"
     gene            complement(19122..19724)
                     /locus_tag="RJ259_000338"
     CDS             complement(19122..19724)
                     /locus_tag="RJ259_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDV7366080.1"
                     /translation="MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGY
                     LAHKGELDITLCILSGTLGSVLGALINYYICFFWGKNFVLKWGKYFGINEVKFAKFEE
                     FFNKHGEFSTFTCRLLPGIRQYISMPAGLVKMKLVNFILFTALGSAIWVAILVFLGYY
                     IGQNEELIKTYLTQILIIIIVFVILASLIYIKIKKPFKKA"
     gene            complement(19805..20032)
                     /locus_tag="RJ259_000339"
     CDS             complement(19805..20032)
                     /locus_tag="RJ259_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366081.1"
                     /translation="MRKILFASLLPIIALADCASLMAKYEAPEPESKTMKQVERWINK
                     KVSDPADAAVLKECMIARAADNPNQVSVAGK"
     gene            complement(20043..21461)
                     /locus_tag="RJ259_000340"
     CDS             complement(20043..21461)
                     /locus_tag="RJ259_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3373 family protein"
                     /protein_id="HDV7366082.1"
                     /translation="MKTKFSLILSACLLSSSLFAKNTDDEITKLQKQLAQIQAELAQI
                     RKEREAQAKQNEAVKAELADLNDRADETEFQAALSKVKFGLEFSTAVSNTNYKVDGQD
                     YSANNKWMNELHLNMNADINDKTKFYGRLSMAKNWSQMGWSGSPLDLDAGRNTRTSGP
                     VLYVDRAYLDYYITPEWIATVGRQPGTDGPGSNLRNNALRQSTYPALAINALGDAAVI
                     TYKPESLQDHKVAIRAAYGKTYQWDEEGKVRDWMSDQKDADANLYYAAVEGELPIEGM
                     GDNLLLLNVAYISDFSLPIDGGTIINNLIGGAGVKNLGDATIANIHFENYKAFGTNFN
                     WFASLGYYNGSNANAFWIPTASSFANNLKFNEEDGYAVHVGGRYDFTKALKVGYEFFW
                     GSRYWYTMSRPSINDPLNIRMTRGTAHDVYVIYQLDRYQFLRLSYTNIQNKWGNRGIP
                     LMGAKKEKSRADNIMLMYNVKF"
     gene            complement(21617..22099)
                     /locus_tag="RJ259_000341"
     CDS             complement(21617..22099)
                     /locus_tag="RJ259_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDV7366083.1"
                     /translation="MIKTIDTSKVNEYKFALIETEKGTMKLKLFGDEAPQTVCNFATL
                     ANEGFYKDLNFHRVIPNFVIQGGCPHGNGVGGPGYEIICECDDQEHKHERGTLSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQIDPKDEESLEVLDSIRQGDKILDIKICDKI
                     "
     gene            complement(22109..22816)
                     /locus_tag="RJ259_000342"
     CDS             complement(22109..22816)
                     /locus_tag="RJ259_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDV7366084.1"
                     /translation="MGRAFEYRRASKEARWDKMSKLFPKLAKAIQVAAKEGGTDPDMN
                     PKLRSAIATAKANNMPKDNIDAAIKRASGKDSADIKNIHYEGKAAHGALVIVECMSDN
                     PTRTVANVKAIFSKNGGEVLQNGSLGFMFTRKAVFHLEKFAGDLEELELDLIDAGLEE
                     LEQNEEELVISGDYTAFGELSSAIETKGLVLKKAGLEYIPNNPVSFSEEQLSDIEKLL
                     DKLEDDDDVQAVYTNID"
     gene            22925..23266
                     /locus_tag="RJ259_000343"
     CDS             22925..23266
                     /locus_tag="RJ259_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDV7366085.1"
                     /translation="MNIAKKELFIAWFFLIAAIVFEVLGTSFLKMENQILGYIFMALF
                     IAFSYFFMGKAIKKIQVGIAYAVWELLGIILILLVSFIVFKESLTLTQILGIVLSIVG
                     IIMINIGEVKE"
     gene            23266..23574
                     /locus_tag="RJ259_000344"
     CDS             23266..23574
                     /locus_tag="RJ259_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDV7366086.1"
                     /translation="MYIFIIVLSALLDIVANLLLKKSDDFKNKIWGLAAIVNAILAFF
                     LLSFSLKYVPLSIAYSTWGAIGIIGTCLGGWILYKEKLNKIGILGIIIVIIAVFLLNY
                     "
     gene            complement(23592..25184)
                     /locus_tag="RJ259_000345"
     CDS             complement(23592..25184)
                     /locus_tag="RJ259_000345"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HDV7366087.1"
                     /translation="MKSIIFNEIKKILECDFALENPKDKNLAHFATPLAFSLAKELKK
                     SPMLIASDLASKFQNHDCFELVEAVNGYLNFRISKTFLNELANQALTNPNDFTKGEKK
                     QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFDTEYYVNDAGNQIYLL
                     GLSILLSVKENILHENVEYPEQYYKGEYIADLAKEAFEKFGKEFFSEENIPSLADWAK
                     DKMLVLIKQNLEQAKIKIDSYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSQK
                     GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFL
                     GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCD
                     THLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNL
                     LFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSL
                     VALSIKTAFSLMGIEAKNKMEH"
     gene            complement(25196..25435)
                     /locus_tag="RJ259_000346"
     CDS             complement(25196..25435)
                     /locus_tag="RJ259_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HDV7366088.1"
                     /translation="MGGWSSPSHWLIILLIVVLLFGAKKIPELAKGLGKGIKTFKDEM
                     NNDDEVAKNTQKIEENKNTTNNTNADASIDETKKA"
     gene            complement(25437..26060)
                     /gene="gmk"
                     /locus_tag="RJ259_000347"
     CDS             complement(25437..26060)
                     /gene="gmk"
                     /locus_tag="RJ259_000347"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDV7366089.1"
                     /translation="MKLQGFVLLISGPSGAGKSTLLKKLFDEFEDELYFSISSTTRKP
                     REGEKNGIHYHFISHEEFQKGIDSDHFLEWARVHENFYGTSLKHTQNALDNGKIVVFD
                     IDVQGFKIARKKMADKIVSVFITTKNKDELKKRLIKRNTDTIIQLEKRLQNASDEMKE
                     LSEYDYLIINDELKQSYEALRAILIAHKFRTKGQNLGQIQNIWNEGE"
     gene            complement(26057..>26688)
                     /locus_tag="RJ259_000348"
     CDS             complement(26057..>26688)
                     /locus_tag="RJ259_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366090.1"
                     /translation="NKELQANISDFDDLPEVEEQEKEMDFDDLPEDAEFLGQAKYNEE
                     SEENLEEFAPVVEEDIQDEIDDFASNLSTQDQIKEELAQLDELDYGIDSDNSSKVLED
                     FKDEPILDDKELGTNEEEVVVPNLNISDFDTLKESDIQEALGEEILEKNEEPIVSDVT
                     KDDNSEEIVNELSQSIAGAITSSIKDDTLKAALKGMNMNININISFKED"
BASE COUNT         9322 a         4848 c         3540 g         8978 t
ORIGIN      
        1 atagataaaa gctccattaa accaatacct ttataacctc taggtgtata ccaaaaacta
       61 ctaatttctt gcttcatcaa cccttctttg taaatcaaat tcttctttct ctaaaacctc
      121 aaacaacttc ttatgaaaat cattattttt aaagtttaaa caaagctttt ttacaagttc
      181 attgcttttc tttttatctt gataattctg ccataaaatt tctttatttt tgttttcata
      241 tcttccattt ggattaaatt cataatgata aatgcaagtt ttaaaaacag ctattttctc
      301 acaaaacata aaataaacat aacaaaaaag cacatcttcg ccataactca aacgctcatc
      361 tattttaatt ttttcaaaac tttttaagat aatatctttt ctaaaacact tagcccaaac
      421 cgaccagcaa aaatgccttt gtttgcttag aaattctaaa aattcttttt gattaaaaaa
      481 ctcatcttgt ttaaaacgat aaaattgctt ggtttttacc ctatgtacaa aagcatcaaa
      541 gcaaagcaaa tcaaaacctt ttttcatctc tttaagcgct attttacaag catcaagagt
      601 taaaaaatca tcactatcta aaaacattat aaaatcagaa ctagaatgca aaactcccaa
      661 atttctactt gcaaaagtgc ccaaattttc ttcattttga aagattttta tccttggatc
      721 ttttttagca aattctaaaa ccatatttaa actattatct ttacttttat catcgataat
      781 caaaatttca atatctttta aagtctgatt tatacaactt tgcaaagctc ttgagataaa
      841 attgcaagaa ttaaaaagcg ggattatgat agaaagttgt ggcatatttt tcctaaattt
      901 tgttaaaata ataaaaacaa ttctatcaaa gtttaggaaa tttatgaaaa tttttataca
      961 tcttcccacc tggttaggcg atacggtaat ggcttcacct gctttataca ctataaaaga
     1021 acattttaaa gatgctcagt ttatccttta tggttctttt gtttctacag cactttttaa
     1081 agaatttcct aattctaaaa tcatcataga aaataaacta tcccgttata aacaagctct
     1141 atctttacgc aaagaacttg gtaaaatcga tcttagcttt gcttttagat ctgcgttctc
     1201 ttctaagatt atcttgcata tccttaaaac aaaacaaaga tatttttttg acaaaaacaa
     1261 gtacaaagaa gaacatcaag ttttaaaata cctttatttt atagaaaatt cacttagtat
     1321 aaaagctcat tttaaggact taaagcttcc ctttaagcta aaatttcaaa accctcttat
     1381 cttaagaaat ggtaaaaaaa ttctaggact caaccctggt gcaagctttg gaagtgcaaa
     1441 aagatgggat gcgagttatt ttgctaaagt ggctttaaat ttcagccaaa gtcatgatat
     1501 tttaatcttt ggtgcaggaa aagccgaaca agaactttgt aatgaaattt atcaaatttt
     1561 aaaagaacaa aacataaaag taaaaaatct ttgcaataaa accaccatca aaaccctttg
     1621 tcaaaatatc gctttttgcg atcttttcat cacaaatgac agtggaccta tgcacctaag
     1681 tgcggtttat aaggtaaaaa ccgtagctat ttttggccct acgaaattta ctcaaacttc
     1741 accttggcaa aatgaaaatg caaaattagt gcatttagat ctagcttgta tgccttgtat
     1801 gcaaaaaacc tgccctttaa aacaccacaa atgcatgaaa gatctaaagc ctgaaaaagt
     1861 gatagaacag gctaaaaatt tacttaaaaa ctctcatcta tgatctgaca aagtgtgtgt
     1921 atgattaaaa tgtgcatttc ttgaattcta gctgtatcat cgcttggcac aacaagatta
     1981 tgatcacaaa gcttattcat cattccacca ccttttccgc taagccctag acaaagcata
     2041 ttaagctctt ttgctttttt taaagcttct aaaacattag ggctttttcc gctcgttgaa
     2101 ataccgatta aaacatcctt ttcattccct aaagcttcca cttgtcttga aaaaacaaac
     2161 tcaaaaccat agtcatttcc tatggcacta agtgctgaag tatcggttgt aagtgctatg
     2221 cctgctaaag ccttgcgttc ttttttataa cgcccgctaa gttcagccgc aaaatgctga
     2281 gcatcagccg cacttccacc gtttccgcaa attaaaattt taccaccttt tttaagacac
     2341 tcacacaaaa gctcacctac tttagcgatt tgtcctttta aaatttcgct tgcttgaaca
     2401 attttttgat gttcttgcca ttctttttcc actaaattta tcatttttta tccttaatct
     2461 tttctatgat cttacttgta ctaaatcctt cttcaaagtc gattaattca acccttgaaa
     2521 cgatatctgc acctacaaca agtttatctt tataatcagc tcctttaacc aaaatatcag
     2581 gctttaaaaa gcttataagt tctaaaggcg tgtcttcatc aaaaatcact acaaaatcaa
     2641 caaaataaaa agctgccaac atacaagctc tttgaaattc tgaatttaca ggacgactct
     2701 cgcctttgag tcttttcaca ctcgcatctg agttcaaacc tacaatcaaa acatcgccca
     2761 atcttttagc tttgtcaagg tattttatat gtccaaaatg cacgatatca aaacaaccat
     2821 ttgtaaaaac aatcttttta ttattttgtt tcaaaagtac caaaagttct tctttgcttt
     2881 tgattttttt ctcaaaatcc acgcgcttaa aacttttaat ctcatcaaaa ctcacactca
     2941 cgctacctat tttacttacc acaacagctg cggcttcatt ggcaagttcg caagctttaa
     3001 aaatttcaat ttcatttgcc aaacaaaaag ccaaaactgc gatcacacta tcgcccgctc
     3061 ctgttacatc ataaacctct aaggctttag caggtgcgat tttcaaaccc tcatcaaaaa
     3121 gtgcaattcc agcttctgaa agagtgatga tagaataacg caaagaaaaa tcttctttta
     3181 attttttgat gcctttttct aaattttcac cctctaaatt ttcaaatttc aaagcctcta
     3241 aagcttcttt tttattaggc gtgagtaagg ttgcaccgct atatttacta aaatcactgc
     3301 ctttaggatc aactaaaaca ggaatattta aagccttagc tttttttatc acagccttac
     3361 aaactttagg ggttaaaaca cctttggcat aatcgcttaa aaccacagcc ttaaagtctt
     3421 taatcttttc atcaaacaaa gcaataagct cattttcaag caaaatctca cttatatctt
     3481 cttcatccag tcttaaaacc tgctgattat gcgccataat acgattttta aaaggagttt
     3541 tgcgtccttt ttggatcaaa aattctcctt ttaaattttc ttgtaaaaat tttccactct
     3601 catcatcgcc cacaacaccg agcgcaaaaa catcagctcc caagcttttt aaatttgcat
     3661 aaacattcgc agccccgcct aatcttttat cttctttaag agttttagct attaaaacag
     3721 gggcttcagg gctgatacgc gaacaatcac accaagtgta attatccacc ataaaatctc
     3781 ctataatcaa aattttaggt ttttgctgac ttaaaaactc aagcatttac ttccttttca
     3841 aaaagtcttt ttatctcgcc taaataatct tttataccct cttcaaggct aaattttggc
     3901 tgataattcc aagtttgatc tagttttgct tcagtatgga actgataaga ttttacataa
     3961 ggatttggga tatattcaca aggcaaatca gtctttaact ctttttgcaa aatatcaact
     4021 atatcttgaa aggttcttgc tttaccactg cctacattat aaaccccaca ttttgaatca
     4081 agggcgatta aattagcact aataacatct ttaatataag taaaatccct ataaatttga
     4141 tcacttcctt caaacaatcg tggatttttt cctgctaaaa tttgatggcc aaattgcaaa
     4201 accatagaag cggttttgtt tttataaaat tcgccttttc cataaacatt aaaatatcta
     4261 agtcctacca aatgagcttt atcgtaatat tttttcgcta acttatccat catcaatttt
     4321 gaaaaagcat aaggattttt tggttcttca tccttaccta cagtttgtgg actttttgca
     4381 tcaccataaa ccgaagctga acttgcataa ataagctttg cattaagatc tatgctaagt
     4441 tctataaaat ctttaaaagt atttaaattg gtttgcaaaa ccttagtttg atcaaaaacc
     4501 gtagtgtctg aaattgctgc ttgatgaaaa ataatctctg gtttaaaatc ttcaatcttt
     4561 tttaaaactt tttcatcgtt aatatcgcct gcaaaaagtt ctccatcaaa ttcaagtaaa
     4621 tttttaaaat gcccaaaact ttgcaaattt ccattttcaa aagtcgcact actacgcatt
     4681 ttatcgatga ttaaaatttc atgtttttct tgcaaattta aagctagttg cgaacctata
     4741 aatcctgctc cacctgtgat tgctattttc atttaaatat ccttttcctt aaaaaagttc
     4801 aaaatttctt ttaaattttt aaattgtcta aaaaaatcac cttctttttt ttcttcattc
     4861 actaaaatca aagtgccaat atcagcattt aatcctgctt gcatatcact tagattatct
     4921 ccgataaaga tagaattttt catatctaaa tcaaactcat cttttgcttt taaaagcatg
     4981 cctgctttag gtttgcgaca ctcacaacct tctaaatgcg gacaatgata aattttatca
     5041 atttttatat cttgtttagc aaattcttta agcatataat cacaaagctt aaaaaaatca
     5101 ctttccttgt aatatcctct tgcaatgcct gattggtttg tcgctataaa aagcaaataa
     5161 tttctagcca aaaaatatct acaaagttca aaaattccat cacaaaattc gaaatcttct
     5221 attttataga catatttttt atctatatta atcacaccgt ctctatctaa aaataatgct
     5281 tttgttttca taaaaacatt ataatatagc ttttttaaaa agaaaataaa cattatcttt
     5341 aatttcttaa gatttttatt aaaaataaag atatataata cctagcaatc taatttttac
     5401 taaggagaaa acaaatgaaa aaattattag tagtttctgc tttggcatgt cttggcgttt
     5461 ctgcttttgc tgcagatggt gctacacttt ttaaaaaatg tgcagtatgc catggtgcaa
     5521 atgctgacaa agtttactta aacaaagttc cagctttaaa aactctttct tctgctgaaa
     5581 gacttcaata catgaaagaa tattcagaag gcaaaagaaa tgcttatggt caaggtgcga
     5641 tcatgaaact taaccttaaa ggtttaactg aagaagattt taaagctatc gaagctcata
     5701 ttgaaacttt aaaataattt ctaaaaaagg ctttcctttt taagaaagcc tttttttatc
     5761 caaagcttct tttttacgcc tttctaattc tatagtatca cgtaaagaat cctcatcatc
     5821 atttaaagta gtaaatttat aatcatcatc aaattgttta ttcttaatcc cccaaagcaa
     5881 agttgccaaa atgataaaaa acgctaaaat agaaacccct atcatcatca tgattatact
     5941 attcattctt tgatccttaa agcatttaaa acgactatta tactactaaa agacatagaa
     6001 atagcagcaa ataaaggatt tatcataccc aaaaaagcca aaggtatggt acaagcatta
     6061 tagaacaaag aaaaagcaag gttttgcttg ataattttaa aggtgttttt agataatttg
     6121 atggcttttt ttaaagaaag caagtcgttt ttcaaaagca aaacatcact actttctata
     6181 gctagatcac ttccttctct taaagtcatc gaaacgcttg cgtattttaa agctagtgcg
     6241 tcatttaccc catcacctac aaacaaaact ttgtaatttt tgcttaaatt ttctatagtt
     6301 ttcatcttat cttcaggcaa acaagaagct tgataatttt gaatttctaa ttttctagct
     6361 attttttcca ctgctttttg atgatcgcca ctgagtatca ttaattcttt cttttctttt
     6421 ttaagataaa cgataagctc ttttgcacct tctcttaaaa cactatcaaa ctcaaaaaaa
     6481 gctaaaattt taccttcctt agcaaaaata aaatgagtat tatcaaattc cttagttgca
     6541 ataccctttt cttgcaaaaa tttagaactt ccgcctaaaa gcaacccttc atttaactca
     6601 gcacttaaac ctttagcttg aatgcttgaa agttttttaa aatccaaatt taaatcctta
     6661 gctccttttt gctttaaata taacgcaata ttttgagata tgggatgttt agaaagtttt
     6721 acaaaattat aaagctcgtt taaatcaagc gctttatcca aaaaaacctc tttaagttca
     6781 agctctattt tggttaaaat acctgtttta tcaaatacca cacaatcaca tttgcttaaa
     6841 tcctctatca cgctagaact tttaaataaa atatgttttt ttaaagctct gcctaaagct
     6901 acaagattgc tcacgggcgt tgctaaagcc agagcacaag gacaagcgat aatcaaaacc
     6961 gcaatcgcat tgactaaaga aatttcaaaa ctctcttcct tgtaaaaaaa ccaaaaagca
     7021 aaacaaataa aagcgatcaa taaaaccgtt ctggaaaaat aagccgaaag actattgacc
     7081 aaactttcaa gttttgcttt tttagaactt gcaagttcta aaagctggat aatttgactg
     7141 agttttgaat ctttgtaaag ctttgttgct tcatactcca cacttccatc aagcactata
     7201 caagctgaaa aaatttcatc ttctttttgt atgagttttg gggtattttc tccatttaaa
     7261 gaagaggtat ccacgctcat ttcaccactt ttacaaatcc catcgattaa aattttatct
     7321 ccagttttaa gtaaaattct atctcccaaa caaacctttt gcacttcttt ggaaacaaat
     7381 tctttaccat caaaaaccaa aacttcattt tgcaaaaaat cattaagccc atctatggta
     7441 tctaaagcac gctttttact aaacatctca agatattttc ctataaaaac aaagcaaatt
     7501 atcatcgcca cggagtcaaa atacacctcc cctaccctaa aaaacatagc ccataaagaa
     7561 taaacataag ccaaactcgc tccgctaatc accaatacat ccatatttaa actatgcatg
     7621 tttaaagttt taaaagcgct tttataaaaa tgagatcccg tataaaaaag cacaggagaa
     7681 caaaggataa attcagcaaa atttaaaata tccttagtat ccttatccat accgctaaaa
     7741 aatcctgcgt attttgccac tgctatccac atgatattca tcacacaagc tatagccaca
     7801 acaagcttag aataaaattc cctttttagc aaatccgctt tttttgaagc cttgctcgca
     7861 tcataagcac tcgctttata acctatgctt tcaataagtc ttaaaatttg caccaaagaa
     7921 atgctttgct catcaaaaac aatacgtgct ttatggttta aatgattgat atcaagttct
     7981 aaaattcctt cttgtttggt taaaattttc tcattaagcc acacacaagc tgcacattct
     8041 ataccgtgta tcatgagata aatttcacta aatccttctt tggttttagt gataaactca
     8101 tcataatttt tcatttcatt ttgaaaattt acagggctta aagtttgatt tccaagcttt
     8161 tcataaaact catctaatcc actttcatgc aaaatttccc aaacgctctc acaaccttta
     8221 caacaaaaaa ttttaccctt atactctatc atttgggctt gtttataatc aagtttgcaa
     8281 tgttcacatt tcataatcat tctttaaaaa aatatttttt ataattataa acaaatttga
     8341 caaaaagtgc atttttttat taaaatcaca ttttacaaaa attattctgc taaatcttac
     8401 gaggacttat ggaaaaagaa aaaaaacaac atcaaagaac ccacgttcca gtggaaggtt
     8461 ataaaatcga agaattaaaa ttattagatt tagaaaatct agttaaaatc gctaatgaat
     8521 gtgaaatcga aaacccaaga gaatttcgcc gccaagaact tatttttgaa attttaaaag
     8581 cacaaacaaa aaaaggcggt tttatacttt ttacagggat tttagaaatt tcttccgaag
     8641 gttatggctt tttaagaggt atggactcta atcttagtga tagcgttaat gacgcttatg
     8701 tttcaaactc acaaattaaa aaatttgctc tgcgtgtagg cgatatcgtt acaggacaag
     8761 ttagagaacc aaaagatcaa gaaaaatact acgctctttt aaaaatcgaa gcgatcaatt
     8821 atctgccttt acaagaagcc aaagaaagac ctttgtttga taacttaacc cctatttttc
     8881 caacagaaaa aatcaaactc gaatacgatg cgatgaagct tacaggtcgt gttttggatc
     8941 tttttactcc tataggaaaa ggacaacgcg ggcttatcgt tgctccacca cgcacaggta
     9001 aaacagagct tatgaaagaa cttgctactg ctattgcaaa aaaccaccca gaaatgcatt
     9061 taatcgtact tttagtcgat gaaaggcctg aagaagttac cgatatgcaa agatgtgtaa
     9121 aaggcgaagt ttttagttct acttttgatt tacctgctta taatcatgtg cgtgtagctg
     9181 aactcgtgat agaaaaagcc aaaagaatgg tagaaacagg caaagatgtt atcatcttgc
     9241 ttgatagtat cacaagactg gcacgtgctt ataacaccgc aactccaagc agcggaaaag
     9301 tcctaagcgg cggggtggat gctaatgccc tacacaaacc aaaacgcttc tttggtgcag
     9361 ctagaaatat agaaaatgga ggctctttaa ctatagttgc tacagcttta attgatacag
     9421 gttcaagaat ggatgatgtg atttttgaag aatttaaagg cacaggaaat agcgaaatag
     9481 ttcttgatag aaatatcgcc gatagaagaa tttatcctgc gattaatatc atcaaatcag
     9541 gaacaagaaa agaagaatta ctccaaggcg tagcaaatct tcaaaaaatt tgggcgatcc
     9601 gttcagcgat ttctcaaatg gatgatgttg aagcgttgaa atttttatat tctaaaatgc
     9661 ttaaaaccaa agacaatgta gaacttttat ctataatgaa cgagtaaaaa atgcttcaag
     9721 ctttagcgat taaatacaga ccaaaaactt ttgatgaact tataggacaa aagacagtta
     9781 gcgtaagttt aaaatacgcc ctaaatcata atcgcttagc tcatgcttat cttttttcag
     9841 gacttagagg aagtggaaaa acttcaagtg ctagaatttt ttctcgtgct ttagtttgcg
     9901 aacaaggacc aagtgatact ccatgtggca cttgcaaaca ctgtcttgca gcacttgaag
     9961 gcaaacatat agacattata gaaatggatg ctgcaagcaa ccgtgggctt gaagatatac
    10021 aagccttaat cgaacaaacc aaatacaccc cttctatggc aagatttaaa attttcatca
    10081 ttgatgaagt acatatgctt accccacagg ctgcaaatgc gcttttaaaa accttagaag
    10141 aacccccaag ttatgttaaa tttatacttg caaccacaga tcctttaaaa cttccagcta
    10201 ctgtgctttc aagaacacaa cattttcgct ttaaacaaat tccacagagt gaaattttaa
    10261 atcatcttaa agaaatttta cttaaagaaa atgttaaatt tgaagaagaa gctttaaaat
    10321 ttatagcaag aagcggcaat ggatctttaa gagatacttt aaccttgctt gaccaagcta
    10381 ttattttttg tcaaaatgaa atcagcatta gtaaaattac agatatgtta ggctttttag
    10441 atcctcaaaa aatcaaaacc ttttatcagg ctatcttaac aaaagacaag gaaaaagttt
    10501 ttgcgtattt agaggaatta caagactatg aagcctcaag cgtgattgat gaaatgcttt
    10561 tttatttaaa agaaagtttt tttgcaaaaa gtacagaatt ttctacttta atttatgaaa
    10621 gatttttccg tattttatca aaagctaaga atatgctttg cgatgatgat ggctttacgc
    10681 tttgtgttat ggcttttatg atgatggaag caagtcattt aaaagaaatt gacgcacaaa
    10741 tccaagaaat caaacaagaa aatatgacaa atattacacc taggatcaca cctgctccta
    10801 tcatacctaa tcttgagaaa aaaatagaaa aaaatgctta tgaaatcttg cttgatagta
    10861 tttatgatag ggattttaat cttgcagaat gctttaaaca aagcacaaaa tttattagtt
    10921 ttgaaaacaa tactttaaat ataagctcaa acgcacaagg acaaaatcgc gatacactca
    10981 ataaaggttt taaactcata caagaacttt ttaaagctaa atttggggaa aatgcaaaaa
    11041 ttaatgtgca aaaagcacta acaattgatg aaaataagct tcaatcctta actcaagaat
    11101 taccaaacaa tgaaaataaa aacatagata ttcaaagttc tattaatatg cttaaagaag
    11161 gggccaaaaa atttgaccca caagaagatc ttaaagaggc tcttaaagat tgctttggca
    11221 atcctcaaat ccaaaatata gattaagata ttgcttaata ataataatat aagtaatctt
    11281 tagctacaat atttttttat aaattattta gaaagaagaa taaaaatgca aagaagagac
    11341 tttcttaatg gcatggcctt agctgtcgtt gcaggcatga cacccttaca attactctat
    11401 ggaaaagata gtaaaattga agactttaca aaagaatact atcctcccaa tctacttgga
    11461 ttaagaggta gtaataataa aagctataaa tatgctcaca tgttaagaga tggagataaa
    11521 tttggtttta gcagtataaa acctaaagaa aattatgatt tagtaatcgt tggagctgga
    11581 atcagtggac tagctgcagc ttgtttttat caacaaaaat ttggggaaaa taaaaaaatt
    11641 ttaattcttg acaatcatga tgattttgga ggacatgcta gacgcaatga aatacaactt
    11701 gatgaaggaa ccattttaag ttacggagga agtgaaagtt ttcaatcccc aaaagcactt
    11761 tattctaaag aagtaatcga actcttaaaa tcacttggag tcagtataga tgaattagca
    11821 aaacgatttg atgtaaattt ttacccagat ttaaaattaa gcagaggggt atatttttca
    11881 aaagaaaatt ttggtgttga taaagttgtc aatggaaatc ctagaaaagt tatttgtgat
    11941 gatatcccag attctaaaaa taatggaaaa agtattgaaa attttattaa agattttcct
    12001 atgacttcta aagataaaag agagttaata tcccttttta aaagcaataa agactatctc
    12061 aaaggtttaa gcaaagagga aaaagaagaa tatatggcta aaacaagtta taaaaaattc
    12121 ttagaagaaa aagtaaaatt atcccaaaaa gctataacat ttttcgaggg aatgacggat
    12181 gattttttag ctttaggtat agatgcaatc tcttgtgagg atgcaagaat ttctttttta
    12241 cctgggtttg ataaattagg acttgatcct atcgaaggag aagctttggc cgaaatggaa
    12301 gaaccttaca tttatcattg cgccgatgga aatgctacag tagcaagatt aatggtaaga
    12361 aagctgattc ctacagtgtc acaaaaaggt aaagatatgg acgatatcac cttagctcat
    12421 tttgactact caaaacttga tgactctaat aataaagttc gtttacgatt aaatagtact
    12481 gttattcatg tagaaaatac aaaaaatgga accttaataa gctatatcaa tcaaggaaaa
    12541 aaatatagaa ttaaagcaaa aaatgttgta atggctaatt ataacaatat gattccttat
    12601 attatcccta gtttacctaa agaacaaaaa gaagccttaa gtaaaaatgt aaaaacatct
    12661 ctacttcaca ccaaagtaat tataagcaat tgggaaccat ttattaaact aggggttcat
    12721 gaaatttatt caccaaaaat gccttacgct agaacaaaac ttgattatcc ggttgatatg
    12781 ggtggctatc atcatccaag agatccaaaa aaacctatat gtattcatat ggtttgctct
    12841 cctttagctc tagccaatat tcaaggtatt gatcttgaag ggcttgatgc aagagataga
    12901 gccagagtag gtagaaatct attgtttacc atgagttttg aagaacatga aaaaatcatt
    12961 agggggcagc ttcaaggaat gttgggaact gcaggtttta accacgaaaa agatatatta
    13021 gcaattgttg taaatcgctg gggacattgt tactcctata cagaaaatag tctttatgat
    13081 gatcctaaaa ttgcagagca aaccaggctt atagctagaa aaccttttgg caatattgtt
    13141 atagctaatt cagattcaga ttggtcagct tatatgcatt cagctatcga ccaagcttat
    13201 cgcgctatta atgagatcaa ggcttagatt ttctaagcct taaagaatta aacactacag
    13261 taacagaact aaaacacatt gcaagtgctg ctatatgagg acttaaagcg ataaaaggta
    13321 caaatcctgc tgcgatggga atgcaaagta cattataaat aaaagcccaa aaaagattta
    13381 gcttaataat actgcgtgtt tttttagcaa gcttaaagca tttaaaaata gctgataaat
    13441 catcttttat caagataaaa tcccctgttt tttttgcaag ttcatttgcc tttgaaaaac
    13501 ttatactcac acttgcagca gataaagctg ccgcatcatt gatcccatct cctacaaaaa
    13561 gagttttttc aaatttttga atgatttgta gtttttcttc actcttaagt tgagcataaa
    13621 attcgtctat ttgtaattct ttggctattt tttctacatt ttttacatga tcgccgctta
    13681 aaataaaagt tttaagattt tgctctttca aatttaacac aagctcttta gcctcatctt
    13741 ttaaagcatt acttaataaa acaccgccta aacacttttt attcttagca aaatacaccc
    13801 taacatattc tttaaaagag tcaaaaaaga tatcactttc ttttgtatca atttcatttt
    13861 cgtgcaaaaa ctgcgcactg cctgcaagat aaatatcact atcttcttta tattttatgc
    13921 cagaacccac aatcactctt ccctcaccct ttaaatcaca aatttgatct ttatgtaaag
    13981 ccttagctat aggatgagag cttaaacttt caatttgaca taatttatca aaatcatctt
    14041 tagaaagatt gtgtttaaaa acactcaatt tttcctttgt taatgtaccc gttttatcaa
    14101 aaaaagcata cttaactaag gctaattttt ctaaagcagc aggattttta ataagaatga
    14161 aattttttgc cgcatttgtg cttgccacaa ccaaagctat aggtgttgca agccctaaag
    14221 cacaaggaca agagatcaaa agcacagcac aagcgtgtaa aaaagccgta tttaaatctg
    14281 tttttgccgc ccaaaaaaca aaaactaaaa aagcaaaaaa tattataccc cctacaaagt
    14341 atttagaaat ttgatctgct aaatttgcca aaggactttt gatatttcct gcttcaaaaa
    14401 ctagattttt gatttgttct aaagtgctat ccatagcctt tttatttgcc ttaatcctta
    14461 aagcaccatt taaaaccact cctcctgctt gaacttcatc gccttctttt tttaaaacag
    14521 gtaaaaactc cccatttaaa aaactcatat caagctctgc acttcctaaa agcaccactc
    14581 catctgcgac aatgctttct ccttctttta ccaaaagcac atcaccactt ttgacaaaag
    14641 aacttggaat ttctttgata ctttcatctt caagcaaaat ttttgtcttt tttgtgtcta
    14701 tattttctaa aattctttga taatcttgtg ctttaaattt ggccttactt tcaagatatt
    14761 ttcctaaaag cacaaaagaa ataatcatca ttgcaccact aaaatacaaa tcttcttctt
    14821 taaaaatttg caaatacacc aaaaaagaat acacaaaagc actcaaagtc cccaaagcta
    14881 caagggtatt catatctaaa tttttgcttt taaagcctaa aaaagcatga gaaaaaaagt
    14941 ctctcccaca ataaaatatc ccaaaaaaac tcaaagccat ttggatattt tgagaaaaag
    15001 aacttttaac aaacatttca aaatacataa taatcacact caaaactata cttaagagca
    15061 aattttttct taattctaag tgtttttttg ccttgtatgc gttcaagctt tgttcatctt
    15121 ctaaaatttc aaagcctaaa tttttaattt ttgcgatgat atccttgcgt tttttttgat
    15181 cttcaagtaa aaaaaccccg ctagaattca cataagaaac actagcatct ttaacaccat
    15241 caattttttt acaagctctt tctatagcat tagaacaatt aacgcaagtc attttgccta
    15301 tttttatacg caattcttcc attataaacg ctctacaatc tcaaaaccta aatcttgaaa
    15361 ttcttttgta aaatttgata cttgattttc ttctaaattt aaacttaaaa ttttttgctc
    15421 caaatccact tctatatttc caaattcatc ttcaagagaa tttttgatca aatttacaca
    15481 attcatgcaa ttaacatttt ttactttaaa tttcattttc actccttata ggttgtatgg
    15541 taatatgccc gatttcaaat tcatgcaaca acttatgaga taaatcctga gatagttttt
    15601 caaattcctt tagattgcaa actcttactt ttaaatgcat agaggctact agcattttat
    15661 tagtgatttg agtaatatgc aaatccacta cctcatccac actaggattt aaaagcaaaa
    15721 cttgtcttac tttttctata tccacaggag aactttcaag caagacatta gcactttgtt
    15781 taagcaagat aatcgcccat cttaaaagca agattgataa tacaatagct aaaatcgtat
    15841 ctatataaac aatatcacta aaatacacca caatcccacc tataataacc gctaaagaac
    15901 ccaataaatc gctcatcata tgcaaaaaag cggacttcat attgacattt tctaaatttg
    15961 cacccttaaa catcatcaaa gcattaatcc catttaccaa aaagcccaaa atagctacaa
    16021 ttatcatggt tttagcgtca atttcttttg gattgataaa tttttctata gcctcataaa
    16081 tgataaataa agccgataaa ataatggtta aagcattgat aaaagccact aaaacttcaa
    16141 gacgaaaata cccaaaggtc ttttgatgat cttgccattt ttctacagct ataatggcta
    16201 aaaaactaag agctaaggca aaaacatcag aaaacatatg caaagtatcg cttaaaagtg
    16261 ccaaagaatt tgaaaggatt gaataaataa attgcacaag catcatagaa aaagtcatta
    16321 aaagagaaat ttttaaaatc tttttatcca cactccttgc atcggcatgg gaatgatgat
    16381 gttcatgaga atgttcttcg tgattatgat gacaagattt gttagctaaa ggctcgtgtg
    16441 ataaaaattt atacatctta tatccttttt tgcttgacat tttaagatat taagctaaaa
    16501 aggatataaa tatttgttat ttttataaaa attaaaagtc aaaaagctcg cctagccaac
    16561 tttctttctt tttcttttta taatagtcat tgtgctgatg ataagctgag tcattatatc
    16621 ttgactcttg tcttggagct tggttaaaat ttgctgtatt agggacactg cgttctatga
    16681 ttttgtcaag ctctccacga tcaagccaaa cgccacgaca ctttggacaa taatcaatct
    16741 caactccact cctatcactc ataaccaaat ctacattaca aactggacat aacatacaat
    16801 accttttttt aaatttttga cttaaaatta taaaaagaaa tattaaacaa atttacaaca
    16861 agttttaatg tttttttgca tgtctagtca tcataaaact ttgttcaaaa aatataagca
    16921 aggtaacact cactcctata gctagagcca aagtcacaga aacagttgta aaaaaataat
    16981 caaaaaattg aactaaaaat tcagacttag ccttcaaatc atcactgcgt ataaaagaaa
    17041 taagatacaa aatcgcttta taagcataaa ttccaggtat cataggaata agagcaggga
    17101 aagcgataat ttcagcagga gttttgatga tttttgctaa aacaattcct aaacatccta
    17161 tgcaaaatga agcaacaaaa gttgcaattg ctaaagtttg aaaatgaaaa tattccacca
    17221 aggtaaaacg aagtccatgt gcaattgccg ctaaaagagc agataaaata agggttttta
    17281 aaggtggatt acaagcataa gcaaagccaa atcccgccac agcagcaaaa aacatatctc
    17341 ttaaaataaa ttcaatcatc ttaaaatccc aaaatccgaa atactaagcg tcatgtaaat
    17401 tccaagtgct atacaacaaa tcaaaatagc cacgctgata atacggctaa gccccattaa
    17461 aatatgatct tttaatatat caatcacaga atttataaaa aatacccctg gtataagata
    17521 caagatacta gaacccaaag ccacatcaga agtattggta tatcccatat ccagtccaaa
    17581 aaatacaaac catgatgaga taaaagaaca aaggatgtat tgaattctta aatcaatctt
    17641 tgctttagtt aaaatatatc ttaataacaa tcccacaaaa gttgcaaaaa atactaaatt
    17701 tccagcacca aaatcaccac caaaaagcct gcaaaaagcc gaatttgcca tagaaacaaa
    17761 taaaagatta agcaaataag aatgcttttt ttgttgagaa atttgcccaa aaacgacttt
    17821 tgctttttca agatcgtatt tgtgatcata tatagcccag cttaaagcac ttaaatcaaa
    17881 aataagttta aaattaacat gggcatgatg attgggtata acataagttc tttgaatgga
    17941 gttatcatcc atatctacaa catttaaagt aatatgatga aaaaagaaat tgatatttat
    18001 ctcatagcca taaacctcag ctattcttcc tacgcatttt gccaccctag ctgtataagt
    18061 tccagcacct agcaaagttt tagtatatat gattaaaaaa ttagttaatc tttgtatatc
    18121 aggtttttcc atattttaat aatctttgat tgaatttgtt ataattatag caaattttaa
    18181 aataaataag gagaaaaaat ggcaaaaatc ggtatagttg gtttaggtta tgtaggagct
    18241 gctagtgctt atagcatagt tattcaagga atttgttcag aactttactt atatgatata
    18301 aaacaagatt tagctctagc tcatgcaaga gatttggaag atatgtcagc cattcatttt
    18361 tcttatacaa aaatttttca tgtgccaaat ttagaaaatt tagcttcttg cgatattatc
    18421 attttagctt ttagaaaaga aagcttaaaa gaattaccta gtcgcttagt agaacttaaa
    18481 aacaatatcc tcgaacttaa agacattgtc ttaaccttaa aaaatgctaa ttttaaaggc
    18541 aaatacattg tcgcaacaaa tccaaatgac accataactt actacactca agtattaagc
    18601 caattaccta aaaatcatgt ttttggtagt ggaacaaatt tggatagttc aagacttaag
    18661 aaattgttag ccaaagattt aaacataaat tcaaaagata tttttgcttg tatgattggt
    18721 gaacatggag attctcagtt tgcagcactt tctaatgcaa gcgttttagg acaaaattta
    18781 ttagattttt ataagcaaaa attaggcaaa gatttagaca tacaagaact cgaaaaagcc
    18841 gtgattagcg agggatattt catctatgaa cgcaaaggaa ggacagaatt tggcatagga
    18901 acttcttgtg caaatttagc caaagccatc ctagaagata gaaaaagttt acatcctgta
    18961 agtgtggttt ttgatgatat agctttttca atgcccgcta tcataggaaa agatggtata
    19021 gaaaaggttt ttgaattaaa attcaatgaa aaagaaaaaa taaaattaga aaattcaaaa
    19081 caacaaatca aaaacgccat acaaagcgta aaagataaaa tttaagcctt tttaaaaggc
    19141 tttttgattt taatataaat taaacttgct aaaatcacaa aaacaattat aataattaaa
    19201 atttgagtta aataagtttt aatcaactct tcattttgtc ctatataata acccaaaaat
    19261 acaagtatag ccacccaaat agcactacca agtgcagtaa aaagtataaa atttacaagt
    19321 ttcattttta ccaaacctgc aggcatagag atgtactgac gaatccctgg taaaagacga
    19381 caagtaaagg ttgaaaattc cccatgtttg ttaaaaaatt cttcaaattt agcaaatttg
    19441 acttcgttta taccaaaata cttaccccat tttaatacaa aatttttacc ccaaaaaaag
    19501 caaatataat aattaatcaa agcccctaaa acagaaccta aagtcccact aagtatacaa
    19561 agagtgatat caagttcgcc tttatgtgcc aaatatccag caggtatcat aacaacttca
    19621 cttggaaaag gtataaaaca actctctaag gtcattaaga taataatacc caaatacccc
    19681 caagcactag ccgtctcaac aataaaagaa atgatttctt gcatattagc cttatttgaa
    19741 gaaaatttta aaaaattgta gcttaaaaga ttaaacagta aaaagcggtt ttataccgct
    19801 ttttttattt acctgcaacc gaaacttgat ttggattgtc cgctgcacga gcgatcatac
    19861 attcttttaa aacagcagca tcagctggat cgctaacttt tttattaatc cagcgttcaa
    19921 cttgtttcat tgtttttgac tctggctctg gagcttcgta ttttgccatc aaacttgcac
    19981 agtcagccaa agcaatgata ggtaataaac ttgcaaaaag tatttttctc atcttttgct
    20041 ccttagaatt ttacattata cattaacatg atattatcag ctcttgattt ttctttttta
    20101 gctcccatta atggaattcc acgatttccc catttgtttt ggatattggt atagcttaag
    20161 cgtaagaatt gatatctatc aagttgataa atcacataaa catcatgagc tgttcctctt
    20221 gtcattctta tattaagcgg atcattgata cttggacggc tcatagtata ccagtatcta
    20281 cttccccaga aaaactcata acctactttt aaagccttgg taaaatcata gcgtccgcct
    20341 acatgcacag cataaccatc ttcttcattg aattttaaat tatttgcgaa actactggca
    20401 gtaggtatcc agaaagcatt agcattgctt ccattgtagt atcctaaaga agcaaaccag
    20461 ttaaaatttg ttccaaaagc tttgtagttt tcaaaatgga tatttgctat agtggcatca
    20521 ccaagatttt taacaccggc accaccaatt aaattattaa ttattgttcc accatcaata
    20581 ggaagtgaaa agtcgctaat ataagctaca ttaagaagta ataagttatc ccccataccc
    20641 tctataggaa gttctccttc tactgcagca tagtaaagat ttgcatcagc atctttttga
    20701 tcgctcatcc agtctcttac cttaccctct tcatcccatt gataagtttt accataagct
    20761 gcacggatgg ctaccttatg atcttgtaaa ctttcaggtt tataagtgat tactgctgca
    20821 tcacctagag cattaatcgc taaggctgga taagtggatt gtcttagagc attgtttcta
    20881 agattacttc ctggaccatc ggttcctggc tgtcttccta cggttgcaat ccactcaggt
    20941 gtgatatagt agtcaagata agctctatct acataaagta caggcccact tgttcttgtg
    21001 tttcttcctg catctaagtc aagtggactt ccactccaac ccatttgaga ccaattttta
    21061 gccatagata aacgaccata gaatttggtt ttatcattaa tatcagcatt catatttaaa
    21121 tgaagctcat tcatccattt gttattagca ctataatctt gtccgtcaac tttatagttt
    21181 gtatttgaaa ccgctgttga aaactcaagt ccaaatttaa ccttgctcaa agcagcttgg
    21241 aattctgttt catcggctct atcattaaga tcagcaagtt cagcttttac agcttcattt
    21301 tgcttagctt gagcttccct ttcttttctg atttgtgcaa gttcagcttg aatttgtgca
    21361 agctgttttt gaagcttggt tatctcatca tctgtatttt tagcaaaaag tgaagatgaa
    21421 agaagacaag cacttaaaat aagtgaaaac ttagttttca taatcataac tccttgtaat
    21481 tttgttacat ttagcaaatt aaaattgtga ttatagaaaa aaaagtttaa aaaaaaatta
    21541 tacattaatc atttttagct agtcaaactt atgactagct ttgtaaatat tgtagtttca
    21601 aaaaagtttt aaatttttaa attttatcgc aaatttttat gtctaaaatt ttatctcctt
    21661 ggcgtataga gtctaaaact tctaaacttt cttcatcttt tggatcaatt tgcccaaaaa
    21721 cagtatgaac cccatctaaa tgagcttgag ggctgtgaca aatgaaaaat tgagaaccac
    21781 ccgtatcgcg tcctgcgtgt gccatagata aagttccacg ctcatgttta tgctcttgat
    21841 catcacattc gcaaatgatt tcatatccag gcccacctac accattgccg tgtggacaac
    21901 ctccttgtat gacaaaattt gggatcacac gatgaaaatt taaatcttta taaaatccct
    21961 cattagccaa agtagcaaaa ttacaaaccg tttgcggagc ctcatcgcca aaaagtttta
    22021 atttcattgt gcctttttca gtttctataa gagcaaattt gtattcattt actttgcttg
    22081 tgtcaattgt ttttatcatt atttctcctt aatctatatt tgtataaaca gcttgaacat
    22141 catcatcatc ttctaactta tctaaaagtt tttctatatc gctaagctgt tcttcgctaa
    22201 agcttacagg attgtttggt atatactcaa gtcctgcttt tttaagaact aaacccttag
    22261 tctctatagc agaacttagc tcaccaaagg cagtataatc accgctaatt actaactctt
    22321 cttcattttg ttctaattct tcaagccctg catcgatcaa atcaagttct aattcttcta
    22381 aatctcctgc aaatttttca agatgaaaaa ccgcttttct agtaaacata aagcctaaag
    22441 atccattttg taaaacttct ccaccatttt tgctaaaaat ggctttaaca ttagccacgg
    22501 tgcgcgtagg gttatcgctc atacattcaa ctataaccaa agctccatgt gcagcttttc
    22561 cttcataatg aatgttttta atatctgcgc tatcttttcc acttgcacgc ttaatagccg
    22621 catctatatt atcttttggc atattatttg cttttgctgt ggctatagca cttcttaatt
    22681 ttggattcat atcaggatca gtgccacctt ctttagcagc tacttgtatg gctttagcaa
    22741 gcttaggaaa aagcttactc attttatccc atctagcctc tttagaagct cttcggtatt
    22801 caaacgctcg tcccataaat tctcactttc tttaaagatt tttaaactta aaagtataaa
    22861 ctaaaaaggc taattaaagc tttaaatggt atgattttac catttatttt tagggagaag
    22921 ctttttgaat atcgcaaaaa aagaactttt tattgcttgg tttttcttga ttgctgctat
    22981 tgtatttgaa gttttaggta ctagtttttt aaaaatggaa aatcaaattt taggctatat
    23041 atttatggct ttatttatag ctttttctta tttttttatg ggcaaggcga ttaaaaaaat
    23101 tcaagtaggc atagcctatg ccgtatggga acttttaggg attattctta tacttttagt
    23161 ttcttttata gtttttaaag agagtttaac cttaactcaa attttaggca ttgttctttc
    23221 tatcgttgga attatcatga ttaatatagg cgaggttaaa gaataatgta tatttttatt
    23281 attgttctat cggcattgtt agatatcgta gcaaatttat tgctaaaaaa atcagatgat
    23341 tttaagaata aaatttgggg cttagctgcg attgtcaatg ctatacttgc tttttttcta
    23401 ctttcttttt ctttaaaata tgttccttta agcatagctt actcaacttg gggtgctata
    23461 ggcatcatag gaacttgtct tggtggatgg attttatata aagaaaaatt aaacaaaata
    23521 ggaattttag gtatcattat cgtgataata gcagtatttt tactaaacta ttaaaacagc
    23581 aaaatgcggt tttaatgttc cattttgttt tttgcttcaa tacccattaa agaaaatgcg
    23641 gttttaatac taagagcaac caaagaaaat aatttaagca aatcattttc atttgcagag
    23701 cctacaactt tattttcatt gtagaattta tgaaaatttg cagctaaatt tttaagataa
    23761 tcaggaattt tttgcaaagc tctagcctca aaagcatcgt ttaaaacagc ctttaaattc
    23821 aaagcttcaa aaagcaaatt tacgccatct tgatttaaac tttgtaaatc agctttcatt
    23881 acatcatcga tttttttacc agctttagca aacacttgat gaattctagc gtgtgcatag
    23941 ttgatataat acacaggatt agaactatct tctttttgca aatcactgat atcaaattcc
    24001 aaatgcgtat cgcatttttt gctcaaaaag atataacgca aagcatcact tcctatctca
    24061 tcaaccacat cgctcatcaa gataaaattt cctgctcttt tactcatttt ataaggttct
    24121 ccatctttaa gtagggaaac catttgtgct aaaataatct caagattatt agagtcaaat
    24181 cccaaaaatt ccattgcagc tttcattcta gggatataac catgatgatc tgctccccaa
    24241 atattaatac actttccata accacgactc attttatctt tatgataaac aatatctgct
    24301 gccaaataag tcccgcgtcc atcttcacgg ataattaccc tatctttttc atcgcctttt
    24361 tgcgaagaag caagccaaat tttaccttct tgctcgtaaa ttcctttatg ctcttttaaa
    24421 gattctaaag ttgcatttaa agcatcataa tacgatcttt cgcttacata gctgtcaatt
    24481 ttaatctttg cttgttctaa attttgttta atcaaaacaa gcattttatc ttttgcccaa
    24541 tcagccaaac tagggatatt ttcttcgcta aaaaattctt taccaaattt ttcaaaagct
    24601 tcttttgcta aatccgctat atactcgcct ttgtaatatt gctctggata ttcaacattt
    24661 tcatgaagta tattttcttt cacacttagt aaaatagaaa gccctagtaa ataaatttga
    24721 ttacccgcat cattgacata gtattctgta tcgaatttat agcccaaatg tcttgcaagt
    24781 cttgttaagg tgtctccaaa aacagcgcct cttgcatgtc ctatgtgtaa aggcccagta
    24841 ggatttgcac tcacatattc aagcaaaaaa ctttcttgtt ttttttctcc tttagtaaaa
    24901 tcatttggat ttgttaaagc ctgatttgca agttcattta aaaaagtttt ggaaattcta
    24961 aaatttaaat acccatttac agcttcaact aattcaaaac aatcatgatt ttgaaatttg
    25021 ctcgctaagt cgctagcgat caacataggg gattttttta attccttagc cagtgaaaaa
    25081 gccaaagggg tagcaaaatg tgctaaattt ttatcctttg gattttcaag cgcaaaatca
    25141 cactctaaaa tctttttaat ttcattaaaa ataatacttt tcaaaagact aaaccttaag
    25201 ctttttttgt ttcgtctata cttgcatcag catttgtatt attagttgtg tttttgtttt
    25261 cttctatttt ttgagtattt tttgctactt catcatcatt attcatttca tctttaaaag
    25321 ttttaatacc tttgcctaaa ccctttgcaa gttctggaat tttttttgct ccaaaaagca
    25381 atacaacaat caataaaata atcaaccaat gacttggact tgaccaacca cccattttat
    25441 tctccttcat tccaaatatt ctgaatttgc cctagattct gccctttggt tctaaattta
    25501 tgggcgatta aaatcgctcg caatgcttca taactttgct ttaactcatc gttaatgata
    25561 agataatcat actcgctaag ctctttcatt tcatcactag cgttttgtaa tcttttttct
    25621 agttgtatta ttgtatcagt atttcgctta ataagtcttt tttttaactc atctttattt
    25681 tttgtagtaa taaaaacaga aacaatctta tcagccattt tttttctggc tattttaaat
    25741 ccttgcacat caatatcaaa aacaactatt tttccattat ctaaagcatt ttgagtgtgc
    25801 tttaaagaag taccataaaa attttcatgc actctagccc attctaaaaa atgatcacta
    25861 tctatacctt tttgaaattc ttcatgggat ataaaatgat aatgtattcc atttttttca
    25921 ccctctcttg gtttgcgagt tgttgaagaa atagaaaaat aaagctcatc ttcaaattca
    25981 tcaaaaagtt tttttaaaag agttgatttt ccagcaccac taggacctga aatcaacaaa
    26041 acaaaacctt gcaatttcaa tcctctttaa aactaatgtt tatatttata ttcatattca
    26101 tacccttaag agcagctttt aaggtatcat ctttaatact tgaagtgatc gctcctgcta
    26161 tgctttggct aagctcatta actatctctt cgctattatc atctttagtt acatcactta
    26221 ctataggctc ttcatttttt tctaagattt cctctccaag agcttcttgt atatcacttt
    26281 ctttcaatgt atcaaaatca cttatattta aatttggcac aaccacttcc tcttcatttg
    26341 ttcctaattc tttatcgtct aaaattggtt catctttaaa atcttctaag accttgctac
    26401 tattgtcact atcaatacca taatcaagct catcaagttg agctagttct tctttgattt
    26461 gatcttgagt actcaaattt gaagcaaaat catctatttc atcttgaata tcttcttcca
    26521 caacaggagc aaactcctct aaattttcct ctgattcttc attatatttt gcttgaccta
    26581 aaaattcagc atcctcagga agatcatcaa aatccatttc tttttcttgc tcttcaacct
    26641 caggaagatc atcaaaatcg cttatattag cttgtaattc tttattat
//
LOCUS       DAPIWJ010000011        26037 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.011, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000011 DAPIWJ010000000
VERSION     DAPIWJ010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 26037)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26037)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26037
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.011"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            69..890
                     /gene="mltG"
                     /locus_tag="RJ259_000349"
     CDS             69..890
                     /gene="mltG"
                     /locus_tag="RJ259_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002884526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HDV7366091.1"
                     /translation="MSQIITYLKQNKYQMSNIDKYILFFLGHPQSGWINIGTKDLNRA
                     EFLHKLTIAKAALQTITLIPGETSVIFLEQAAKQLGLDKDILLKEFQAQAPYDEGVFL
                     PETYKIPKGITENLLIQMLLNHAEISNKKTSEKIFGDYNPKKWHQYIIIASVIQKEAA
                     NDNEMPIVASVIYNRLKKGMKLQMDGTLNYGIYSHVKVTPQRIRQDNSFYNTYKFTGL
                     PKEAVCNVSLAAIRAAIFPLKTDYLYFVRDKNTGVHIFSTNIDDHNKAINLQKGK"
     gene            970..1401
                     /gene="flgB"
                     /locus_tag="RJ259_000350"
     CDS             970..1401
                     /gene="flgB"
                     /locus_tag="RJ259_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HDV7366092.1"
                     /translation="MINPFKSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEF
                     ETALVNRANEIFKKNDKKELELAVTEEGHQKPWKFPDPSKSTIYLRDGHLARNDANTV
                     DLDVETTEMSKNTVMITALDGVLRRQSNIFSSILDASSKLS"
     gene            1411..1905
                     /gene="flgC"
                     /locus_tag="RJ259_000351"
     CDS             1411..1905
                     /gene="flgC"
                     /locus_tag="RJ259_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HDV7366093.1"
                     /translation="MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRR
                     REVIFKATDFDKLLNEQINKDNNFLKYENPLNDPSSPEEAKPAIQSVVVDKVVRDDKD
                     FRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID
                     LLRG"
     gene            1912..2208
                     /gene="fliE"
                     /locus_tag="RJ259_000352"
     CDS             1912..2208
                     /gene="fliE"
                     /locus_tag="RJ259_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HDV7366094.1"
                     /translation="MNNINDLRLNNNISNTNKSQNSTGIGDEFAKMLKNEIDDLNKAQ
                     ESGEAAMTDIATGQVKDLHQAAIAITKAESSMKFMLEVRNKAISAYKEITRTQI"
     gene            2215..4005
                     /locus_tag="RJ259_000353"
     CDS             2215..4005
                     /locus_tag="RJ259_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HDV7366095.1"
                     /translation="MQEYKKNRVSKVAFAYCMALLFMIIFISSTFFLTSKRHIPNTEK
                     DQYALALRGSIITKDNFTITSSKQIYRAEIDLRSINKDKFDLFLKLFQIYSGISNDQV
                     ADIKKRMQNQKKRSYNFVLLQNLDSKQASYLKDLAKKLYIQGFFKAFTNNSGRVETRG
                     LNIIEHEEDRIYMSKDSFTPIIGYTKMILDPESGILKNIGVKGLEKYYDACLSPVQNE
                     KIQGLKDIGGNIILNLNSLQQKKINGCDLYLNLSLKLQKSIEKAIDQRNEDLKANEII
                     VGVMESKTGRILALASSRRYDPQNRGKDLSVLNASAIEYGYEAGSVIKPFIFTTALRL
                     GKIKMDEVINTYGGSYKLGRFTIKDDHKMDKMTMEEVIRYSSNIGMIQIAKRLNNIEI
                     VSGLKIFKFGEKSGIDLPYEQKGEIPNPKRLRDIEKSVLSYGYGLKTTFIQLLAAYNV
                     FNNDGFYITPRLAEKFYQNGRFTNLDDDVKKEKILSSEAAKTMQNVLINVIEKGTGKK
                     AITQGIIAGGKTGTARIAERQGYTSNRYNASFFGFANDLNHAYTIGVLVRHPTKPYSY
                     YAAQSALPMFKDVVDILINEEFLTPIQDNN"
     gene            complement(4020..5789)
                     /locus_tag="RJ259_000354"
     CDS             complement(4020..5789)
                     /locus_tag="RJ259_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi symporter"
                     /protein_id="HDV7366096.1"
                     /translation="MQEERNSLKYFKFISWSIFTLVLIFILIRYDELANLLAGVAILL
                     IGMTNLGIGFKAFSGGLLEKILAKSTDTKIKSILFGTLSTLIMQSSTLVSIITISFLS
                     AGLISLGAGIGIIFGANLGNTASSWLIVGLTNIKISMLAIPLLIIGVLFFFQKDSVLK
                     GLGNIFIGIGFFFLGVDYIKSGFENFKHIIDLSRFDFAGFKGVFVFLGLGALLTGVIQ
                     SSTATMAIIVAALLAGQISLENSLAATLGTSVGGVVTAVLASLSTNIEGKKLTFASCI
                     FNFGIAFLIVLIFPYFIHFLNFLSIVLNIEDIALKVALFHTLFNLIGVVLFSFFTPQI
                     VLFLNKIVKAPKDKNKDKPLYLDSSLVKFSDTAIEALRKESEHLYNNTYAIVAHAIGF
                     SRKDIQSDKSFKEILENKKWFSKNVDLDYLYQTRIKVLFEAIIDFSTKAQVYINDETK
                     NHKIFTFKMAAKNLAETTKNLKIIQANIKKYSSSSNEFLALEYNKIRSNLGELLRSIE
                     ELRVVEDREKLYLIIKNLQKGKEILKEIDTLTLSNVEHLISVRKITTAEGISILNDTT
                     FAAKIAEELIGAVEVIFSKDISN"
     gene            complement(5793..6227)
                     /locus_tag="RJ259_000355"
     CDS             complement(5793..6227)
                     /locus_tag="RJ259_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366097.1"
                     /translation="MLGIYLLIAALSFLALYFAVKKLTLNIDEQTLLEPIKMDIYPKF
                     CDLIDEKIREFKENVQNTNLALKNSDQKDEFLEKLGDLSRELTFIQTMNLSNKNDSIW
                     QNELFSFLKELENLLLEYLEKGEEEAENLREFLMNEFEKLKG"
     gene            complement(6227..6544)
                     /locus_tag="RJ259_000356"
     CDS             complement(6227..6544)
                     /locus_tag="RJ259_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDV7366098.1"
                     /translation="MIENIPASLWTKQDLNAYQIFDVRTPLEWEEGILPNAQCVALYD
                     NQGLLNAKFLDEFQSKRDESKKLAFICRSGHRSMVAAEFIAEKLGLESINLDGGMLAL
                     KSY"
     gene            complement(6541..8367)
                     /gene="htpG"
                     /locus_tag="RJ259_000357"
     CDS             complement(6541..8367)
                     /gene="htpG"
                     /locus_tag="RJ259_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HDV7366099.1"
                     /translation="MQFQTEVNQLLQLMIHSLYSNKEFFLRELISNASDALDKLNFLS
                     VSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLEN
                     LSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANGYEINDASK
                     EEQGTSITLYLKDDEFANTYKIESIIEKYSNHIQFPIFMEKEEFTPAKEGEEEGKTEL
                     KISQINKANALWRMQKSSLKAEDYERFYEQNFHDSNKPLLYLHTKSEGKLEYNSLFFI
                     PQNAPFDLFRVDYQSGLKLYVKRVFISDDDKELLPTYLRFVRGIIDVEDLPLNVSREI
                     LQENQILKGVKEASVKKILGELEKLKNNDKEKYLSFFKTFGKVLKEGLYGFGGEKDSL
                     LKLMLYKSTKGENLRSLEEYKNDLQGEQKEIFYIAGNNESLLRASPLLEEYKQKNIEV
                     LLMDDEIDSLVTPMLEFEGLKFVAINQVEDKNELSDEEKNTFAPLVAKFKELLKDQVE
                     DVRLTSRLKDSPSCIVYDKNKPDFAMQQLLKQMGQEQNFKPILEINPKHAIFTGLKNN
                     ESFSADIATLVLNMAKLSEGMGVDNPAEFNASLAKIINKAFS"
     gene            complement(8440..8808)
                     /gene="crcB"
                     /locus_tag="RJ259_000358"
     CDS             complement(8440..8808)
                     /gene="crcB"
                     /locus_tag="RJ259_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HDV7366100.1"
                     /translation="MLNTLLVVGFGGFIGAILRMFSINLVNKFFPYSISLGTLFVNVL
                     GSFIIGLLFSYAQNKGLSPLLKSFISTGFLGAFTTFSTFSYQNLLLLQSGNYLHFALN
                     IILNVFLCLFAAWLGFIIFK"
     gene            complement(8802..9494)
                     /locus_tag="RJ259_000359"
     CDS             complement(8802..9494)
                     /locus_tag="RJ259_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HDV7366101.1"
                     /translation="MIYKKIKALYFWIFFVLSVALVIFCFCFTKSQNTLWKIRKIWAK
                     FQRYTISYKQEIIGTFNPQAQMILMNHQSALDIIALEELYPKNLCWIAKKELGEIPIF
                     KVAMKKPKLLCIDRKNPRDLVRVLKEAKERISEDRVLAIFPEGTRSKNEKMLKFQSGA
                     KILSEKLNLKVQPILIVDSAKILDTKSFSASSGVLKIICMDLVDTNDDKWLENTRKKM
                     QELLDQERAKLC"
     gene            complement(9475..10671)
                     /locus_tag="RJ259_000360"
     CDS             complement(9475..10671)
                     /locus_tag="RJ259_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HDV7366102.1"
                     /translation="MKILLTLIFSVVVLFGRGEISVFSGQDENMQKELQKLPQEEQKI
                     YQNIPPSDENNDFESNVDDPFVAKGSLVLTNNEYPSRVYVGEVFPITIYARTTENTKF
                     DFNISVEKTNLSFLNPDAKWEFINNEYKTTLWFEAKNSNASLSKISIKLLRNNEAFQE
                     ADINLNPIKFENTLSNKDFSHLVASSLEIKKVKASYFDDANIIMMVELNATNTNLKSF
                     FIEGIQKQGIENLKGDFNASSAFYYAILPLSKTNFEFSYFNKDSKKLENINLKLKISD
                     DEISTQSDLNPVNKDLNIYKQYTLWFLAVLFGALFIWRKNYIILALAVVCFALSFLVD
                     TNTQNAIIKAGSRAKILPTEPSTYFYTANADEKVEVLGKRQNYIKVLFSDGKIGWVNK
                     DDLQKN"
     gene            complement(10668..11315)
                     /gene="purQ"
                     /locus_tag="RJ259_000361"
     CDS             complement(10668..11315)
                     /gene="purQ"
                     /locus_tag="RJ259_000361"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HDV7366103.1"
                     /translation="MKVAIIRFLGTNCEFDTAYAFEKLGVKTQIIWHEEKEFDADLVV
                     LPGGFSYGDYLRCAAIAKLAPAMQGVFNHAKKGGYILGICNGFQILLESGLLKGAMKH
                     NNNLSFISKNQNLRVVSNGNAFLKNFKKDEIINLPIAHGGGNYYADEATLKELQDKDL
                     ITLKYEPNPNGSVFDIAGICDENKKIFGLMPHPERACEKVLGNDIGLKMLKGFLF"
     gene            complement(11317..11562)
                     /gene="purS"
                     /locus_tag="RJ259_000362"
     CDS             complement(11317..11562)
                     /gene="purS"
                     /locus_tag="RJ259_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HDV7366104.1"
                     /translation="MEVIVNISLKNGVLDPQGKAVEKALHSLNFNSVKEVKIAKQIKI
                     SLDEKDEKLAKEQVKKMCEELLVNSVIEDYELIIEKE"
     gene            complement(11571..12281)
                     /locus_tag="RJ259_000363"
     CDS             complement(11571..12281)
                     /locus_tag="RJ259_000363"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HDV7366105.1"
                     /translation="MTKKEMLYEGKGKKLFKTDDENLLISEFKDDLTAFNAEKRGNES
                     GKGALNCRISTEIFHLLEKNGIKTHLVETISDTEQVVKKCKIVPIEVIVRNVATGSLT
                     KRLGIKDGTVLPFALVEFCLKDDALGDPFINDEHCLILNLVQNEAQISEIKNMARKIN
                     SILTPFFDNKNLRLIDFKIELGLTKDNELVLADEISPDSCRFWDKFSNEKLDKDRFRQ
                     DLGNVKMAYEEVLKRILN"
     gene            complement(12283..13617)
                     /locus_tag="RJ259_000364"
     CDS             complement(12283..13617)
                     /locus_tag="RJ259_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HDV7366106.1"
                     /translation="MMELILKTKRFFAGLAGFATTFILCLFLTSHLQAKVDQKEEQVQ
                     KRLEALDKLTKTLAIVEQYYVDDQNISDLVDKSLSGLLSNLDAHSSFLNEKDFNDMKI
                     QTNGEFGGLGITVGMKDGALTVVSPIEGTPADKAGIKSGDIILKINDEATLGINLNDA
                     VDKMRGKPKTQITLTIFRKGATKPFDVTLTREIIKIESVYAKMIENENILYLRVTNFD
                     KNVVDVASKELKKYPNVKGVILDLRNNPGGLLNQAIGLVNLFVDKGVIVSQKGRIASE
                     NQEYKADPKNKISNASLVVLVNGGSASASEIVSGALQDLKRGVIVGENTFGKGSVQQI
                     IPINKTEALRLTIARYYLPSGRTIQAVGVKPDIEVFPGKVNTQEDGFSIKESDLKQHL
                     ESELEKIDKNKKEDKQENKDNKNLISQKQINDDAQLKSAIDTIKILNIKQGQ"
     gene            13735..14025
                     /locus_tag="RJ259_000365"
     CDS             13735..14025
                     /locus_tag="RJ259_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HDV7366107.1"
                     /translation="MCQEKHTHTHSQKHLKAVCNRLSRTIGHLSAIKRMVENDKDCSE
                     ILIQLAAVKAEVNNTAKVVLKEHLAHCMVHAVEENDIQSIEELNKAIDMFMK"
     gene            14137..16710
                     /locus_tag="RJ259_000366"
     CDS             14137..16710
                     /locus_tag="RJ259_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7366108.1"
                     /translation="MANIQDFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALSVDN
                     ASILNQILNKLNISKEALELEIKSRISKLATSSNVNRENIRFSNELINSLENAKGLMS
                     ANGDSYLSVDTWLISESQKSPIKEILAQFLDLREFQKELESLRAGRKMDSKTSDETLD
                     SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVE
                     ALAQRIIKKDVPKSLQNKKVIALDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILF
                     IDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDAALQRRFQ
                     PVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAID
                     LIDEAAAELKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELAN
                     LKEKQNALNSQFENEKSVFDGISAKKKEIDLLKNEASLAKARGEFQKAAELEYGKIPS
                     LEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQKFLEVE
                     KHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKF
                     LFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEV
                     EKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILTSNIASSAIMNLSGKEQEDAV
                     KNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENA
                     ALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKK
                     A"
     gene            complement(16738..18669)
                     /locus_tag="RJ259_000367"
     CDS             complement(16738..18669)
                     /locus_tag="RJ259_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HDV7366109.1"
                     /translation="MKILKYIFSFFTLLFIAGFIYVAYLFTSADTEGYTFKEYKPPLT
                     TQIYDRNGKLVANIFEQHRFYAPYEELPPRLIEALVAIEDTSFFEHNGVNIDAIFRAA
                     VKIIKSGGKTMEGASTLTQQFIKNTELTPERTITRKIREALLAYKMETILTKEQILER
                     YLNFIFFGHGYYGVKTAALGYFHKNLNELSLKEIAMLVGMPKAPSSYDPTKHLDLSIS
                     RANNVISRMYNLGWISKADYDIAIKEIPQVYDDTLTQNAAPYVVDEVIKQLSPNIKDL
                     KTGGYKIILNIDLDVQNMAQNALKFGYDEIVKRDKDANLSTLNGAMVVVNHQSGDVLA
                     LVGGVDYEKSNYNRATQSMRQPGSSFKPFVYQVAINLGYSPMSEIADISRIFEGGAGN
                     NEDWKPKNEGGKFLGLITLKEALTRSRNLATINLALDMGLDVLYSKLMEFGFKDIPPN
                     LSIVLGSFGISPLEYSKFYTMFGNYGTIKDPQIIRQVQDKTGKTIMEFNSNERKVSDE
                     AQSFLVLDMMRNVVEKGTGRNARVKDIEIAGKTGTTNKSVDAWFCGLTPEIEAIIWYG
                     NDNNKPMRYTEGGARTAAPVFREFLTQYIEKFPDTTRKFSIPNGVYRGNYKGESAYYT
                     TKSPLPKVNMKFNESEIIF"
     gene            complement(18666..19217)
                     /gene="maf"
                     /locus_tag="RJ259_000368"
     CDS             complement(18666..19217)
                     /gene="maf"
                     /locus_tag="RJ259_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HDV7366110.1"
                     /translation="MLILASSSISRANLLKTAKIDFRQVSFDYDENLNKNISPFLYVQ
                     KIVLEKERQFLSTLGKDFQNQNLLFADSIVCIDEKILTKAKDKKEAYEMLALQNGKYA
                     SILSAFLLVKPEKRVFSLSKTTLYFKNFDENALRDYVENDLYKGKAGCIMCEGFHQNF
                     ITQQVGNLSTALGLDIQTLKAYL"
     gene            complement(19217..21745)
                     /gene="alaS"
                     /locus_tag="RJ259_000369"
     CDS             complement(19217..21745)
                     /gene="alaS"
                     /locus_tag="RJ259_000369"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HDV7366111.1"
                     /translation="MDIRKAYLDFFASKGHEITPSSPLVPDDATLLFTNAGMVPFKSI
                     FTGEIPRPNPPRKTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQA
                     IAYAWEFVTEVLKLPKDRLYVTVHENDDEAFNLWQKHIQKERIYKFGDKDNFWQMGDT
                     GPCGPCSEIFYDQGQEHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPS
                     IDTGMGLERVTAIKEGKFSNFDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRS
                     SVFLLAQGVSFDKEGRGYVLRRILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTY
                     LNEKKDFIKEQIRLEEERFLSTIENGIEIFNEELKNTKEIFSGEVAFKLYDTYGFPLD
                     LTADMLREKNLKVDEEKFELFMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFV
                     GYEKAECESKILALLDEDFKEVSTLKDVGWVMLENTPFYATSGGQSADSGFIAKREVL
                     DTQKFFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGSH
                     VSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKS
                     GAIALFNEKYQGNVRVLTLGESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAV
                     VSKAALEFVKNQLEELSKVKDELKNNDILSGIKKLKNEILSLKNELKNSSKTELDSKN
                     IQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEKITLAAGVKDVPLKAGAL
                     VKEAAQILGGNGGGRDDFATAGGKDLSKINEALKQSLETIEKAL"
     gene            21860..22933
                     /locus_tag="RJ259_000370"
     CDS             21860..22933
                     /locus_tag="RJ259_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HDV7366112.1"
                     /translation="MNFINLQAQYLAYKDEINAEIESVLSSSSFIGGTKLNEFEQNLA
                     HFLGVKHAIGCSSGTSALYLALRTLDIGKDDEVIVPSFTFIATAEVVALVGAKPVFVD
                     INLSNYNLDFEAVQKAITPKTKAVIVVSIFGQMSDLRALEEILKDKNITLIEDGAQSF
                     GASFKGEKSCSIAKISCTSFFPSKPLGAYGDGGAIFCHDDEIAKKIRILLNHGQTQCY
                     KHEFIGINGRLDTLQAAILNVKLKYLEKELDKRQKLAQIYNANLKNCQIPQINPNAFS
                     AYAQYSVLVEDRASVLQKFEKANIPYAIHYPTPLHKQPCFSEFSNLELKNSEYASEHI
                     LSLPFSPFLSEEEQEQVICIFKD"
     gene            22938..23804
                     /locus_tag="RJ259_000371"
     CDS             22938..23804
                     /locus_tag="RJ259_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDV7366113.1"
                     /translation="MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDD
                     IFYDDLDKFLNQNNDIIIIATPTNSHLTIAKKVFKQCKCVLIEKPLALNLKEIDEISN
                     LAKEYSIKVGVGFCERFNPAVLALKKELENEEIISINIQRFSPYPQRISDVGILQDLA
                     VHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCELEKCIASIHQSWNSTQKLR
                     KIHLITKNHFYEANLNDFSLLKDGNFIELTQQSPLFSEHEALLKLIDNQPNHLASTSD
                     AYKVQEILERFA"
     gene            23801..24712
                     /locus_tag="RJ259_000372"
     CDS             23801..24712
                     /locus_tag="RJ259_000372"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HDV7366114.1"
                     /translation="MKLVLFLNMGGATNLQDCEVFLKNMFNDPYILGIKNRFLRKFVA
                     WIITKARVKAMQENYKKMGGKSPLNELTQSLCDKLNLKQDEFKFDFVNLYVPPFATEI
                     LQKYTLNASDEIILFPLYPHHSCTTVTSSLEVLQNEISKQKIQAKVKTIDIFYKNELY
                     NEMIVSHILAKKSKFDAKILIFSAHSLPQSIIDKGDLYEKHVNDHVEILKEKLKDHFD
                     EFILAYQSKLGPVKWLEPNTSDVLANLNDKALIYPISFCIDCSETIFELGMEYKHLSK
                     YNYDLISCPNDSDEFMEFILKYLSDLN"
     gene            complement(24774..25996)
                     /locus_tag="RJ259_000373"
                     /pseudo
     CDS             complement(24774..25996)
                     /locus_tag="RJ259_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882411.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
BASE COUNT         9249 a         4356 c         3658 g         8774 t
ORIGIN      
        1 tggggatttt ttattatcta actcagcctt taaaaagcaa ttctgtggta tttattcccc
       61 aaggttcaat ttctcaaatt ataacatatt taaagcaaaa taaatatcag atgagtaata
      121 ttgataaata tattttattt tttttaggac accctcaatc aggctggatc aacataggta
      181 caaaagattt aaatagagct gaatttctac ataaactcac tattgctaaa gcagcacttc
      241 aaaccattac tcttatccca ggagaaacaa gcgtaatctt tctagaacaa gcagccaaac
      301 aacttggact tgataaagat atacttttaa aagaatttca agctcaagct ccttatgatg
      361 aaggagtttt tttaccagaa acttataaaa tcccgaaagg cattacagaa aatctactca
      421 ttcaaatgct tttaaaccat gctgaaattt ccaataaaaa aacttctgag aaaatttttg
      481 gtgattataa tccaaaaaaa tggcaccaat atatcatcat cgcttctgta atacaaaaag
      541 aagctgctaa tgacaatgaa atgcctatag ttgcaagcgt aatttacaat cgacttaaaa
      601 aaggtatgaa gcttcaaatg gatggaactt taaattatgg aatttactcc catgtaaaag
      661 ttaccccaca aagaataaga caagataata gcttttataa tacctataaa tttacaggat
      721 tgcctaaaga agcggtttgt aatgtttctt tagctgctat tcgtgcagct atttttcctt
      781 taaagacaga ttatttatat tttgtgcgtg ataaaaatac tggagttcat atttttagca
      841 caaatataga tgatcacaat aaagccataa atttacaaaa aggaaaataa ttttgatatt
      901 tttatacaaa acagttaaat tggaacagta tttgcttgtt aatattaaaa attataaaaa
      961 ggataaaaaa tgattaaccc atttaaatca aaagaactag tcactggtgc tttagcgggt
     1021 agaaatctaa gaaatcaact catcaatgcc aatcttgcaa atgttgatac tcctttttat
     1081 aaagcaagag atattgaatt tgaaacagct ttggtaaatc gtgcaaatga aattttcaaa
     1141 aaaaatgaca aaaaagaatt agaattggca gtaaccgaag aagggcatca aaaaccttgg
     1201 aaatttcctg atcctagtaa atctactatt tacttaagag atggtcattt ggcaagaaat
     1261 gatgcaaata ctgttgatct agatgtagaa actacagaaa tgagtaaaaa tacagttatg
     1321 ataacagctc ttgatggagt tttaagaaga caaagcaata tctttagttc tatacttgat
     1381 gcaagctcta aattaagtta aaggtaaatt atggcatact taagtgattt tgatattagt
     1441 ggttatggtt taagtgctca gcgttttaga atgaatgtta ttagctctaa tatagctaat
     1501 gcaaacacta caagaacagc tgaaggtggg ccttatagaa gacgcgaagt gatctttaaa
     1561 gcaacagatt ttgataagct tttaaatgag caaattaaca aagataataa ttttttaaaa
     1621 tatgaaaatc ctttaaatga tccaagttcg ccagaagaag ctaaacctgc tattcaaagt
     1681 gttgtagtgg ataaagtggt cagagatgac aaagattttc gtatgaagta tgatccaagc
     1741 catcctgatg caaatgctga aggttatgta gcgtatccaa atgtaaaccc tgttattgaa
     1801 atggcagatt tgattgaagc tacaagagct tatcaagcca atgtaagtgc ttttacaagt
     1861 gcaaaaacta tagctcaaag tgcgattgat ttattaagag gataataaaa aatgaacaat
     1921 attaatgatt taagattaaa taataatatt tcaaatacca acaaaagtca aaattccaca
     1981 ggaattggtg atgaatttgc caagatgctt aaaaatgaaa tcgatgattt aaataaagca
     2041 caagaaagtg gagaagctgc aatgacagac attgccacag gacaagtaaa agatttacat
     2101 caagcagcta tagctatcac taaagctgaa agcagcatga aatttatgct agaagtaaga
     2161 aataaagcga tcagtgctta taaagaaatc acaagaactc aaatttaaac cctaatgcaa
     2221 gaatataaaa aaaatagggt ttcaaaagtt gcctttgcct actgcatggc acttttgttt
     2281 atgattattt ttatcagctc tacttttttt cttacatcaa aacgtcatat acctaacact
     2341 gaaaaagatc aatacgctct tgctctaaga ggatcgatta taaccaaaga taattttact
     2401 atcacaagtt ctaaacaaat ttatcgtgct gaaattgatc ttagaagcat taacaaagat
     2461 aaatttgatc tatttttaaa gctttttcaa atttatagtg ggataagtaa cgatcaagta
     2521 gcagatatta aaaaaagaat gcaaaatcaa aaaaaacgct cttataattt tgttctttta
     2581 caaaacttag actccaagca agcaagctac cttaaagatc ttgctaaaaa actttatata
     2641 caaggttttt tcaaagcttt tacaaataac tcaggaagag ttgaaacaag aggattaaat
     2701 atcatcgaac atgaagaaga tagaatttac atgtcaaaag attcttttac tcctattatc
     2761 ggttatacta aaatgatatt agatccagaa agtggaattt taaaaaatat aggagttaaa
     2821 ggtttagaaa aatactacga tgcatgtcta agccctgttc aaaatgaaaa aattcaagga
     2881 cttaaagata taggtggaaa tattatttta aatctaaatt cactacaaca aaaaaagatc
     2941 aatggttgtg atttatattt aaatctttct ttaaaactgc aaaaaagtat agagaaagct
     3001 atagatcaaa gaaatgagga tttaaaagcc aatgaaatca tcgttggggt aatggaaagt
     3061 aaaacaggaa gaattttagc tctagcaagc tcaaggcgtt atgacccaca aaatcgcgga
     3121 aaggatctat cagttcttaa tgcaagcgct atagaatacg gctatgaagc aggttctgtt
     3181 atcaaacctt ttatctttac aacagcctta agacttggta aaataaaaat ggatgaagtg
     3241 attaatactt atggcggttc ttacaagcta ggacgtttca ccatcaaaga cgatcacaaa
     3301 atggacaaaa tgactatgga ggaagttata agatattctt caaatatagg catgatacaa
     3361 attgctaaaa gacttaacaa tatagaaatc gtatcagggc ttaaaatatt taaatttggc
     3421 gaaaaaagtg gtattgatct accctatgaa caaaaaggag aaattccaaa tcctaagcgc
     3481 ttaagagata tagaaaaatc tgttttaagt tatggttatg gacttaaaac aacctttata
     3541 caactccttg cagcttataa tgttttcaac aatgatgggt tttatatcac accacgttta
     3601 gctgaaaaat tctatcaaaa tggacgcttt acaaatcttg atgatgatgt aaaaaaagaa
     3661 aaaattcttt ctagcgaagc cgctaaaacg atgcaaaatg ttcttataaa tgttatagaa
     3721 aaaggaacag gaaaaaaggc aattacacaa ggtattattg caggaggtaa aacaggaacg
     3781 gcaagaatag ccgaaagaca aggttacacc tcaaatcgct acaatgcatc cttttttggt
     3841 tttgcaaatg atttaaatca cgcctatacc ataggagttc tcgtaagaca tcctactaaa
     3901 ccttatagtt attatgctgc acaaagtgct ttgcctatgt ttaaagatgt tgttgatatt
     3961 ttaatcaatg aagaatttct aacgcctata caagacaata actaaactag cacaaacaac
     4021 tagtttgata tatctttaga aaatatcacc tcaacagcac ctataagttc ttcagcaatc
     4081 ttagcagcaa aagttgtatc attaagtatt gaaattcctt cagctgttgt gatttttctt
     4141 actgaaataa gatgttcaac attgctcaag gttaaagtat cgatttcttt taaaatttct
     4201 tttccttttt gaagattttt aataatcaaa taaagctttt cacgatcttc aacaactcta
     4261 agctcttcga tacttcttaa aagctctcct aaattcgatc taattttatt gtactctaaa
     4321 gccaaaaatt cattagaaga actagaatat ttcttaatat ttgcttggat aatttttaaa
     4381 tttttagttg tttcggctaa atttttagct gccatcttaa aggtaaaaat tttatgattc
     4441 tttgtttcat cgttaatata aacttgtgct ttagttgaaa aatcgataat agcttcaaaa
     4501 agaaccttta tcctagtttg atacaaatag tccaaatcca catttttact aaaccacttt
     4561 ttattttcta aaatttcttt aaaactttta tcactttgta tatctttacg actaaaacct
     4621 atagcatgag caacaattgc ataggtattg ttataaagat gctcgctttc tttccttaaa
     4681 gcttcgatgg ctgtgtcact aaacttaacc aaactactat caagatataa aggcttgtct
     4741 ttattcttat ctttaggagc ttttactatc ttatttaaaa aaagaacaat ttgaggagta
     4801 aagaatgaaa aaagcacaac accaattaaa ttaaacaaag tgtgaaataa tgctactttc
     4861 aaagctatat cttctatgtt taatacaatg gataaaaaat taagaaaatg tataaaataa
     4921 ggaaaaataa gcactattaa aaaagctata ccaaaattaa aaatacaact tgcaaacgtt
     4981 aatttctttc cttcaatatt ggtacttaaa gaagctaaaa cagccgttac aactcctcca
     5041 acactagtac ctaaagttgc tgctaaggaa ttttccaaac tgatttgtcc tgcaagtaaa
     5101 gcagcgacaa taatagccat tgtagctgtg cttgattgta taactcctgt aagcaaagca
     5161 cctaatccta aaaaaacaaa aactccttta aaaccagcaa aatcaaaacg agaaagatca
     5221 attatatgtt taaaattttc aaaaccactt ttaatataat ccacacccaa aaagaaaaat
     5281 cctataccaa taaaaatatt acccaaacct tttaaaacac tatctttttg aaagaaaaat
     5341 aatactccaa taatcaaaag tgggatagct agcattgaaa ttttaatatt tgtcaaacca
     5401 acaatcagcc aagagcttgc cgtatttcct aaatttgctc caaaaataat ccctatgccc
     5461 gcacccaaag aaataagccc tgcactcaaa aaagaaatcg taataataga aactaaagtt
     5521 gaagattgca taattaaagt acttaaagta ccaaaaagta tactttttat ctttgtatcg
     5581 gttgacttcg ctaaaatttt ttcaagtaaa ccaccactaa aagctttaaa acctatacct
     5641 aaattagtca ttccaataag aagtattgcc actcctgcta aaagattggc aagctcgtca
     5701 taacgaatta aaataaaaat cagaactaaa gtaaaaatac tccatgaaat aaatttaaaa
     5761 tattttaaag aatttctttc ctcttgcaat gcctaacctt ttagtttttc aaattcattc
     5821 atcagaaatt ctcttaaatt ttcggcttct tcttcgcctt tttctagata ctcaagcaat
     5881 aaattttcta attcctttaa aaaagaaaaa agttcatttt gccagatact atcgttttta
     5941 ttgcttaaat tcatggtttg tatgaaagtc aactctctgc ttaaatcccc aagtttttct
     6001 aaaaattcat ctttttgatc agaatttttt aatgctaaat tagtattttg gacattttct
     6061 ttaaattctc tgattttttc atcgattaaa tcgcaaaatt tcggataaat atccatttta
     6121 ataggctcta aaagggtttg ctcgtctata tttaaagtaa gctttttaac agcaaaataa
     6181 agagctaaaa aagacaaagc tgctatgagt aaataaattc ctagcattaa taactcttaa
     6241 gggctagcat tccgccatct aaattgatgc tttcaagtcc caatttttca gctataaatt
     6301 cagctgcaac catgcttcta tggccactac gacaaataaa agcaagtttt ttactttcat
     6361 ctcttttgct ttgaaattca tctaaaaatt tagcatttaa aagcccttga ttatcatata
     6421 aagccacaca ttgcgcatta ggtaaaatac cttcttccca ttctaaagga gtacgcacat
     6481 caaaaatttg atatgcgttt aaatcttgct ttgtccaaag acttgcaggg atattttcta
     6541 tcatgaaaaa gccttattga taatttttgc aaggcttgca ttaaattcag caggattatc
     6601 cactcccata ccttcgctta gttttgccat atttaaaact agggttgcta tatctgcact
     6661 aaaactttcg ttgtttttaa gacctgtaaa aatagcgtgc tttggattga tttctaaaat
     6721 aggtttgaaa ttttgttctt gacccatttg ttttaagagt tgttgcatag caaaatcagg
     6781 tttattttta tcgtaaacta tacaacttgg gctatctttc aagcgactgg ttagtcttac
     6841 atcttcaact tgatctttta gaagttcttt aaatttagct acaagtggag caaaagtatt
     6901 tttttcttca tcgcttagtt catttttatc ttctacttga ttaatggcta caaatttcaa
     6961 accttcaaat tctagcatag gagttactaa agaatcaatc tcatcatcca tgagtaaaac
     7021 ttctatattt ttttgcttat attcttcaag taaaggagag gctcttaata aactttcatt
     7081 atttcctgct atataaaaaa tttccttttg ctcgccttga aggtcatttt tatactcttc
     7141 taaagagcgt aaattttcac ctttggtgct tttataaagc atgagtttta aaagactgtc
     7201 tttttctccg ccaaaaccat aaagtccttc ttttaatacc ttaccaaagg ttttaaagaa
     7261 agataagtat ttttctttat cattgttttt aagtttttca agttcaccta aaatcttttt
     7321 aacgctagct tctttaacac cttttaaaat ttgattttct tgtaaaattt cacggcttac
     7381 attaagtggt aaatcttcta catcgataat cccacgcaca aaacgcaaat aagttggtaa
     7441 aagttcttta tcatcatcgc tgataaatac acgttttaca taaagtttta agccgctttg
     7501 ataatccaca cggaacaaat caaaaggtgc attttgtggt atgaaaaata aggaattgta
     7561 ttctaatttt ccttcgcttt tagtgtgaag ataaagtaaa ggtttgtttg aatcatgaaa
     7621 attttgctca taaaatcttt cataatcttc tgctttaagg cttgattttt gcattctcca
     7681 taaagcattg gctttattga tttgagaaat tttaagttca gtttttcctt cttcttcgcc
     7741 ctctttagca ggagtaaatt cttctttttc catgaaaatt ggaaattgaa tatgattaga
     7801 atatttttct ataatgcttt cgattttata agtattagca aactcatcat cttttaaata
     7861 taaagtaatg cttgttcctt gttcttcttt gcttgcgtca ttaatctcat aaccatttgc
     7921 atcggaactc caaagataag ctttatcatc taaagctttt ttacttaaaa cttcgatttt
     7981 gctagccacc ataaaagcag aataaaaacc tactccaaat tgtcctatga gttgagaatc
     8041 ttttttagca tcaccgctca aattttctaa aaagctttta gtgccacttt ttgctatggt
     8101 tccaaggttg ttgataagat catctttatc catacctata ccattatcac taatacttaa
     8161 agttttttta tctttatcaa ttttgatttc aattttaggt tcaaatttta agcttttata
     8221 tttatcatca cttacgctta aaaaattaag cttatctaaa gcatcgcttg catttgaaat
     8281 aagttctctt aaaaaaaatt ctttattaga atataaagaa tgtatcataa gctgtaaaag
     8341 ctgattgact tcggtttgaa attgcatttt aacttccttt gtaatttttt aaagtggtat
     8401 tttagcaaaa aatacaaatt ctaaagtaaa tttaaagatt tatttgaaaa ttataaaacc
     8461 aagccatgcg gcaaataagc aaagaaagac atttaagata atatttaacg caaaatgaag
     8521 ataatttcca ctttgcaaaa gaagtaaatt ttgataagaa aaagtagaaa aagttgtaaa
     8581 agctcctaaa aaacctgtac ttataaagct tttaagtaaa ggagataaac ctttattttg
     8641 tgcataagaa aacaaaagtc ctatgataaa agaacccaaa acattaacaa aaagagttcc
     8701 aaggctgata gaataaggaa aaaatttatt cactaaatta atagaaaaca ttcttaagat
     8761 tgctcctata aatcccccaa aaccaacaac taaaagggta tttagcaaag cttagctctt
     8821 tcttgatcga gtaattcttg catttttttt ctagtgtttt caagccattt gtcatcattt
     8881 gtatcgacta aatccataca aatgatttta agcactccgc tgcttgcact aaaacttttt
     8941 gtgtctaaaa tttttgcaga atccacaatt aaaatgggtt gaactttaag atttaatttt
     9001 tcacttaaaa tttttgctcc actttgaaat ttaagcattt tttcattttt agatctagtt
     9061 ccttctggaa aaatagccaa aaccctatct tcgctaattc tttcttttgc ttcttttaaa
     9121 actcgtacca aatcacgcgg attttttcta tctatacaaa gaagttttgg ttttttcata
     9181 gcaactttga aaataggaat ttctcctaat tcttttttgg caatccagca taaattttta
     9241 ggatataatt cttctaaagc gatgatatct aaagcacttt gatgattcat taaaatcatc
     9301 tgagcttgcg gattaaaagt gccaataatt tcttgtttat aagagatagt atatctttga
     9361 aatttagccc aaattttgcg gattttccaa agtgtgtttt gagattttgt aaagcaaaaa
     9421 caaaaaatca ccaaagcaac acttaaaaca aaaaaaatcc aaaaataaag agctttaatt
     9481 tttttgtaaa tcatctttat taacccaacc tatttttcca tcagaaaaca atactttaat
     9541 ataattttgt cttttgccca aaacttctac tttttcatct gcatttgccg tataaaaata
     9601 agttgaaggc tctgtaggta aaattttagc cctagaacca gccttgataa ttgcattttg
     9661 agtattggta tctacaagaa aactaagtgc aaaacaaaca actgccaaag ccagaataat
     9721 gtaatttttt ctccatataa ataaagctcc aaataaaacc gctaaaaacc ataaggtata
     9781 ttgtttataa atatttaagt ctttatttac aggatttaaa tcactctgag tgctgatctc
     9841 atcgtcacta atttttagtt ttaaatttat attttcaagc tttttactgt ccttattgaa
     9901 atacgaaaat tcaaaatttg ttttacttaa tggcaaaata gcataataaa aagcactaga
     9961 agcattaaaa tcccctttta aattttcaat accttgcttt tgaattcctt ctataaaaaa
    10021 gcttttaaga tttgtattgg ttgcgtttag ttctaccatc ataatgatat tagcatcatc
    10081 aaaataactc gctttaactt ttttaatttc caaagaactt gccacaaggt gtgaaaaatc
    10141 tttattggat aaagtatttt caaatttgat aggattaaga ttgatatcag cctcttgaaa
    10201 agcttcatta tttctaagaa gtttgataga aattttactc aaactagcat ttgaattttt
    10261 ggcttcaaac cataaagttg ttttatattc gttattgata aattcccatt ttgcatctgg
    10321 atttaaaaaa gataagttag ttttttctac gcttatgtta aaatcaaatt ttgtattttc
    10381 cgtagtgcga gcatagatcg taataggaaa aacttctcca acatataccc tacttggata
    10441 ttcattattt gtaagaacca aactcccttt agctacaaaa ggatcatcta cattgctttc
    10501 aaagtcattg ttttcatcac ttggcggaat attttgataa attttttgtt cttcttgggg
    10561 taatttttgt aattcttttt gcatattttc atcttggccg ctaaatacag aaatttcacc
    10621 cctgccaaac aatacaacaa cactaaaaat taaagttaat aaaattttca aaataaaaag
    10681 cctttaagca ttttcaaacc tatatcatta cctaggactt tttcacaagc acgctcagga
    10741 tgtggcatga gtccaaagat ttttttgttt tcatcacaaa ttcctgcgat atcaaataca
    10801 gaaccatttg gatttggctc gtattttaaa gtaataagat ctttatcttg caattctttt
    10861 aaagtagcct catcagcgta ataatttccc cctccatggg caattggtaa attaataatt
    10921 tcatcttttt tgaaattttt caaaaaggca ttaccattag aaactactct taaattttgg
    10981 ttttttgaga taaaactaag attgttgtta tgcttcattg caccttttaa aagaccgctt
    11041 tcaagtaaaa tttgaaaacc attacaaata cctaagatat atcctccctt ttttgcatga
    11101 ttaaaaacac cttgcatagc aggagcaagt tttgcaatag ctgcacatct tagataatct
    11161 ccataagaaa atccgcctgg caaaacaact aaatctgcat caaattcttt ttcttcatgc
    11221 caaataatct gcgtttttac tccaagtttt tcaaaggcat aagctgtatc aaattcacaa
    11281 tttgtcccta gaaatctaat aatagcaact ttcattttac tctttctcaa ttataagctc
    11341 ataatcttca atgacgctat ttaccaacaa ctcttcacac atttttttta cttgttcttt
    11401 ggctaatttt tcatctttct catcaagaga aattttgatt tgttttgcta tttttacttc
    11461 tttaacacta ttaaaattta aagaatgcaa agctttttcc accgctttgc cttgtggatc
    11521 taaaacccca ttttttaaag aaatatttac aataacttcc atatttttcc ttaatttaat
    11581 attcttttta aaacttcttc ataagccatt tttacattac ctagatcttg acgaaatcta
    11641 tctttgtcta atttttcatt actaaattta tcccaaaatc tacaactatc agggcttatt
    11701 tcatcggcta aaacaagttc attatcttta gttaaaccca gttcgatttt aaagtcaatc
    11761 agccttaaat ttttattgtc aaaaaatgga gttaaaatag agttaatctt tctagccata
    11821 tttttaattt cactaatttg agcttcattt tgcactaaat ttaaaatcaa acaatgctca
    11881 tcattgataa aaggatcgcc taaggcatca tctttaagac aaaattccac caaagcaaaa
    11941 ggtagcacag tgccatcttt aatgcccagt ctttttgtaa gagaacctgt tgcaacattg
    12001 cgtactataa cttcaatagg aacaatttta cattttttaa ccacttgttc tgtatcgctt
    12061 atagtttcta ccaaatgggt tttaatccca tttttttcga gcaaatgaaa aatttcagta
    12121 ctgattctac agtttaatgc accttttcca ctttcattgc ctcttttttc tgcattaaaa
    12181 gcggttaaat catctttaaa ctcactaatt agtaaatttt catcatcagt tttgaaaagt
    12241 tttttacctt ttccttcgta gagcatttct ttttttgtca ttttattgtc cttgtttgat
    12301 atttaaaatt ttaatagtat caatagctga ttttaactgt gcgtcatcat tgatttgttt
    12361 ttgactgatt agatttttat tgtctttatt ttcttgttta tcttcttttt tatttttatc
    12421 tattttttca agctcacttt ctaaatgttg ttttaagtcg ctttctttta tagaaaaacc
    12481 atcttcttga gtatttactt tacctggaaa aacttcaata tcaggtttta cacccactgc
    12541 ttgaatagta cgcccgcttg gaagataata tcttgcaata gtaagcctta aagcttcagt
    12601 tttattaata ggtatgattt gctgaacact accttttcca aaagtatttt cacccacaat
    12661 aacaccacgt ttaagatctt gtaaagctcc acttacaatt tcacttgcac tagcacttcc
    12721 accatttaca agcacaacca aagaagcatt agaaattttg tttttaggat cggctttata
    12781 ttcttgattt tcacttgcga tgcgtccttt ttgagaaaca ataacacctt tatctacaaa
    12841 taaatttaca agtcctatgg cttgatttaa aagtccacca ggattatttc taagatctaa
    12901 aataactcct ttaacattag gatatttttt aagttcttta cttgccacat ctacaacatt
    12961 tttatcaaaa tttgtaaccc taagataaag aatgttttca ttttctatca tttttgcata
    13021 aacactttct atcttaataa tttctcttgt aagtgtaaca tcaaaaggtt ttgttgcacc
    13081 ttttctaaaa atagttaaag tgatttgagt ttttggctta ccacgcattt tatctacagc
    13141 atcattgaga ttaattccta aagtggcctc atcattaatt tttaaaataa tatctcctga
    13201 ttttatccct gctttatctg ctggtgttcc ttctatagga gaaacaactg ttaaagcacc
    13261 atctttcata cctacggtta taccaaggcc accaaattcg ccattggttt gaattttcat
    13321 atcattaaaa tctttttcat ttaaaaaaga agaatgcgca tcaagattgc ttaaaagtcc
    13381 tgataaagat ttatccacca aatcgctgat attttgatca tccacatagt attgctctac
    13441 tatggcaaga gtttttgtaa gcttatctaa agcttctagg cgtttttgaa cctgctcttc
    13501 tttttgatca actttagctt gtaaatgact tgttaaaaat agacataaaa tgaaagtagt
    13561 ggcaaagcct gcaagacccg caaaaaatcg ttttgttttc aaaataagct ccatcattga
    13621 gttttagttt aaagagtaaa ttttaataaa aattgcttaa aaattcgtaa ataaatttaa
    13681 attcttaaaa atatgttaaa atagactaaa aatttcaaaa agaaagttaa tacaatgtgc
    13741 caagaaaaac atactcatac acattctcaa aaacatctta aagcagtttg caatcgtcta
    13801 agtagaacca taggacattt aagcgctatt aaaagaatgg ttgaaaatga caaagactgt
    13861 agtgaaattt taatccagct tgctgccgta aaagccgaag ttaacaatac tgcaaaagta
    13921 gttttaaaag aacatttagc tcattgtatg gtacacgccg tagaagaaaa tgatattcaa
    13981 agtatagaag aattaaacaa ggctatagat atgtttatga aataatctaa aattagtcat
    14041 ttgtcctatt atttaaaaaa ttttactcaa ttaacttgac attatatgac taaagttata
    14101 taatagcaag tctataaact aaataaagga taaaacatgg caaatataca agatttttta
    14161 actgataata tgctttcaaa ccttgaaagt gcagcatctt tagctataca ttctaaaaat
    14221 aatgaagttg tacctttaca tcttttatgg gctttaagcg tagataatgc aagtatttta
    14281 aatcaaattt taaataaatt aaatatttct aaagaagcct tagagcttga aattaaaagc
    14341 agaatttcaa aacttgcaac gagttcaaat gtaaaccgtg aaaatatacg cttttccaat
    14401 gaacttataa attcattaga aaatgctaaa ggattaatga gtgctaatgg agatagttat
    14461 ttaagtgtgg atacttggct tataagtgaa agtcaaaaaa gtcctattaa agaaattttg
    14521 gcgcaatttt tagatttaag agaatttcaa aaagagcttg aaagtctaag agcgggacga
    14581 aaaatggata gcaaaacaag cgatgaaacc ttagacagct taaataaatt tggtatagat
    14641 ttaaccttaa aagcaagcga gggtaaactt gatcctgtta taggcagaga agaagaaatc
    14701 gaacgtttga tgcaaatttt aatacgcaaa accaaaaata accctatact tttaggtgaa
    14761 ccaggcgtag gaaaaacagc tatagtagaa gctttagcac aaagaattat caaaaaagat
    14821 gttccaaaat ctttgcaaaa taaaaaagtt atcgctcttg atatgagtgc tttaattgca
    14881 ggtgcaaaat acagaggaga attcgaagat agattaaaag ctgtggttaa tgaagtgata
    14941 aaaagtgaaa atatcattct ttttatcgat gaaattcaca ctatagtagg agctggagcg
    15001 agtgaaggca gtatggatgc ggcaaatatt ttaaaacccg ctcttgcaag aggtgaactc
    15061 cataccatag gcgcaactac tttaaaagaa tatcgtaaat attttgaaaa agatgcagcc
    15121 ttgcaacgcc gttttcaacc tgtaaatgta ggtgagccaa gtgttaatga ggctttggct
    15181 atgttaaggg gtataaaaga aaagcttgaa attcatcata atgtaaccat aaatgatagc
    15241 gctttagtag ctgcagctaa actttcaaag cgttatatag cggatcgttt tttacctgat
    15301 aaggccattg atttaatcga tgaagctgca gctgaactga aaatgcaaat tgaaagcgaa
    15361 ccaagttctt taagaaaagt acgcaaagat atagaaactt tagaagttga aaatgaagct
    15421 ttaaaaatgg aaaatgatga aaaaaatcaa aaaagactcg atgaaatcgc aaaagaacta
    15481 gctaatttaa aagaaaaaca aaatgcccta aattcacagt ttgaaaatga aaaaagtgtt
    15541 tttgatggca taagtgctaa gaaaaaagaa attgatctgc ttaaaaatga agcttctttg
    15601 gctaaagcta gaggtgaatt tcaaaaagca gccgagctag agtatggaaa aattccaagt
    15661 cttgaaaaag aagtagaaat tttagaagat aaatggaaaa aaatgagtga aaatggagtt
    15721 ttacttaaaa atcaagtgga tgaggatttg gttgctggaa ttttaagcaa atggacgggt
    15781 attagcgtgc aaaaaatgtt aacttctgaa aaacaaaaat tcttagaagt ggaaaaacat
    15841 ttaaaagaaa gtgtcatagg acaagataag gccttaagtg ctttagctag agccattaaa
    15901 cgtaacaaag cagggcttaa tgcggacaat aaacctatag gaagcttttt atttttaggg
    15961 ccaacagggg taggaaaaac acaatcggct aaagctttgg caaaattttt atttgatgat
    16021 gaaaaagcaa tgattcgctt tgatatgagt gaatttatgg aaaaacatag tgtttcaaga
    16081 ctcttaggtg cgcctccagg atatatagga catgaagaag gtggagagct tactgaagcc
    16141 gtacgaagaa aaccttatag cgtgcttttg tttgatgaag ttgaaaaagc acataaagat
    16201 gtatttaatg tgcttttagg gattttagat gatggtagag caaccgatag caaaggtgta
    16261 acagtggatt ttaaaaatac cattatcatt ctaacttcta atatcgcctc aagtgccatt
    16321 atgaatttaa gtggaaaaga acaagaagat gcggtaaaaa atgagttaaa aaatttcttt
    16381 aaacctgagt ttttaaaccg tttagatgat attatcacct ttaatccact tggaaaagat
    16441 gaagcttatg aaatagtcaa gcttttattt aaagatttac aaatgagctt agaaaacaag
    16501 ggaataaaag caagtttaag cgaaaatgca gcccttttaa tcgctaaaga tggttttgac
    16561 cctgattttg gtgctagacc tttaagaaga gctatttatg atcttataga agataaatta
    16621 agcgatatga tacttgctga tgaacttcat gaaaatgata gcattatcat tgatgcaaaa
    16681 gatgatgaaa taatcatcaa aaaagcttaa tcattttgaa agtagatctt tctactttca
    16741 aaatataatc tcgctttcat taaatttcat atttactttt ggtaatggtg atttggtggt
    16801 ataataagca ctttctcctt tataatttcc acgataaact ccattaggaa tgctaaattt
    16861 tctagttgta tcagggaatt tttctatata ttgagttaaa aattctctaa acacaggagc
    16921 agctgttcta gccccacctt ctgtataacg cataggtttg ttgttatcat ttccatacca
    16981 aatgattgct tctatttcag gcgtaagtcc acaaaaccaa gcatcaacac ttttattcgt
    17041 tgttcctgtt tttcctgcta tttctatatc ttttactctt gcattacgcc ctgtgccttt
    17101 ttcaacaaca tttctcatca tatctaaaac cagaaaactt tgcgcttcat cgctgacttt
    17161 acgctcattt gagttaaatt ccatgatggt tttaccggtt ttatcctgaa cttgtctgat
    17221 aatttgagga tctttaatcg taccatagtt cccaaacatg gtataaaatt tcgaatactc
    17281 caaaggagaa ataccaaaac ttcccaatac gattgataaa ttaggcggta tatctttaaa
    17341 tccaaattcc attagtttag agtaaagaac atcaagcccc atatcaagtg cgagattaat
    17401 ggtagctaaa tttcttgatc ttgttaaagc ttcttttaag gtaattaaac ctaaaaattt
    17461 acccccttca tttttaggtt tccaatcctc attattaccc gctccacctt caaaaattct
    17521 agaaatatca gcaatttcac tcataggcga atatcctaaa ttaatcgcca cttgatacac
    17581 aaaaggttta aaagagcttc caggttgacg catactttga gtagcgcggt tataattact
    17641 tttttcataa tcaactccac ctaccaaagc taaaacatca ccactttgat gatttaccac
    17701 gaccatagct ccgttcaaag tgcttaaatt tgcatcttta tcgcgtttta ctatctcatc
    17761 ataaccaaat tttaaagcat tctgtgccat attttgaaca tctaagtcta tatttaaaat
    17821 gattttatat ccacctgttt ttaagtcttt gatattaggg cttaattgtt taatcacttc
    17881 atctacgaca taaggagcag cattttgagt aagcgtatca tcataaactt gcggaatttc
    17941 tttaatggct atatcataat ctgcttttga aatccaacct agattataca ttcttgaaat
    18001 aacattattt gctcttgaaa tggaaagatc taaatgcttt gtaggatcat aactgctagg
    18061 tgcttttggc atacctacta acatagcaat ctctttaagg cttaattcat ttaaattttt
    18121 atgaaaatac cccaaagctg cggtttttac tccataatac ccatgtccaa aaaaaataaa
    18181 atttaaatac ctttctaaaa tttgctcttt agttaaaatg gtttccattt tataagcaag
    18241 caaagcttcg cgaattttac gcgtaatagt tctttcaggg gttaattccg tgtttttaat
    18301 aaattgctgg gtaagagtgg aagctccttc catggttttt ccaccgcttt ttatgatttt
    18361 tacagcagct ctaaaaatgg catcgatatt aactccatta tgttcaaaaa agcttgtatc
    18421 ttctatagca accaaagctt ctataaggcg tggaggaagc tcttcataag gagcgtaaaa
    18481 acgatgttgt tcaaaaatat tagccacaag cttgccattt ctatcgtaaa tttgtgttgt
    18541 aagaggaggt ttgtattctt taaaagtata accctcagta tcagcacttg tgaaaagata
    18601 agccacataa ataaatccag ctataaacaa aagagtaaaa aatgaaaaaa tatattttaa
    18661 tattttcata aataagcctt taaagtttgg atatcaagcc ctaaagcagt gcttagattt
    18721 cctacttgtt gggtgatgaa attttgatga aaaccctcac acataataca acccgccttg
    18781 cctttataaa gatcattttc tacataatct cttaaagcat tttcatcaaa atttttaaaa
    18841 taaagtgtag tttttgaaag agaaaaaact cttttttcag gttttacaag caaaaaagcc
    18901 gataaaatac ttgcatactt tccattttgc aaggcaagca tttcataagc ttctttttta
    18961 tcctttgctt tggtaagaat tttttcatct atacaaacta tactatctgc aaaaagcaaa
    19021 ttttggtttt gaaaatcttt gcctaaagta cttaaaaatt gtctttcttt ttcaagaact
    19081 attttttgaa catataaaaa aggtgaaata tttttattta aattttcatc ataatcaaaa
    19141 ctaacttgcc taaaatcaat ctttgcggtt ttaagcaagt tagctcttga aatggaactt
    19201 gaagcaagaa ttaacattaa agtgcttttt ctatcgtttc taagctttgt tttaaagctt
    19261 cattgatttt gcttaaatct tttccacctg cagtagcaaa atcatctctt ccaccaccat
    19321 ttccacctaa aatttgcgcc gcttctttaa ccaaagctcc tgcttttaaa ggcacatctt
    19381 taacgccagc tgctaaagtg attttttcat cttttacttg gataagtaaa atcaccgctt
    19441 tagcaaattt gtttttaaaa tcatcaatca tagctttaat atcgccatta tctatacgtt
    19501 ttacgcaaat ttcaacacct tggatatttt tagaatcaag ctcggtttta cttgaatttt
    19561 taagctcatt ttttaaactt aaaatttcat ttttaagctt tttaatcccg cttaaaatat
    19621 cattattttt aagttcatct tttactttag aaagttcttc gagttgattt tttacaaatt
    19681 ctaaagccgc tttagaaacc acagcttcaa tacgtctaac tccagcactc acaccacttt
    19741 ctttaactat gtaaaaactt cctatttgag cagtattttt aacatgagtt cccccgcaaa
    19801 gttctttgct ttcacctaga gttaaaacac gcacattgcc ttggtatttt tcattaaaca
    19861 atgctatagc accgcttttt ttagcttctt ctaaaggcat attttctaag atagcttcgc
    19921 ttgagtttat aatcatttta ttgactcttt tttcaatgct ttctagctct tctttgttta
    19981 aagctttatg atgagtaaaa tcaaatctta gtttattgct ttcaaccaaa gatcctgctt
    20041 ggcttacatg agaacctaaa atttctctta aagcatgatg taaaagatga gtggctgagt
    20101 ggtggcgtgc gatttgctct cttttttctg tatcgattct tgcatgaact atatcgttaa
    20161 cttttagttc ttcgcctgct tttataaagc taagattgag attaaaaaac ttttgcgtat
    20221 ctaaaacttc acgcttagct ataaatccac tatcagcact ttgcccccca cttgttgcat
    20281 aaaaaggtgt gttttcaagc atcacccaac ccacatcttt aagggtggaa acttctttaa
    20341 aatcttcatc taaaagggct aaaattttac tttcgcattc tgctttttca taacctacga
    20401 aatgattttc tccaaatttt tcaagtaagt ttttaaaatc tccgcttgca gttttatctc
    20461 cacttccttt ccaagaagcc ttagcgcgtg ctttttgctc attcatgaaa agttcaaatt
    20521 tttcttcatc aactttaaga tttttttctc ttagcatatc agccgttaaa tcaagcggaa
    20581 aaccataagt atcataaagc ttaaaggcta cttctccgct aaaaatttct ttagtgtttt
    20641 taagctcttc attaaaaatt tcaatcccat tttctatagt gcttaaaaat ctttcttctt
    20701 caaggcgaat ttgttctttt ataaagtctt ttttctcatt aagataggta taatgtccgc
    20761 ccattaaatc gcacacaata tcaactagtt tatacataaa agcttgttta aaacctagca
    20821 aatatccatg tcttaaagca cgacgcaaaa tacgacgcaa aacataacct ctaccttctt
    20881 tatcaaaact taccccttgt gcaagcaaaa atacacttga tcttatatga tcagctatga
    20941 ctctaaaact tgctccgctt tcataaacat aagttttatt acaaagtttt gaaatttcat
    21001 tgatgattgg cataaaaagc gagctatcaa aattgctaaa tttaccttct ttaatcgctg
    21061 ttaccctttc aagccccatt cctgtatcaa tgcttggctt tggcagtggg ctaagcactc
    21121 catcagcact tctttcgtat tgcatgaaaa caagattcca gatttctaaa aatctatctc
    21181 catctccgcc catataatct tcgcttgagt taaaatgctc ttgtccttgg tcataaaaaa
    21241 tctcactaca aggaccacaa ggaccagtat cgcccatttg ccagaagtta tctttatcgc
    21301 caaatttgta aattctttct ttttgaatgt gtttttgcca tagattaaaa gcttcatcat
    21361 cgttttcatg cacggttaca taaagtctat ctttaggtag ttttaaaact tcagttacaa
    21421 attcccaagc ataagctatg gcttgttctt taaaataatc cccaaaacta aaattcccaa
    21481 gcatttcaaa aaaagtatga tggcgtgcgg tatatcctac attatctaag tcattgtgct
    21541 ttccacccgc tcttatacaa gtttgacagc ttgttttgcg tggagggttt gggcgtggaa
    21601 tttctcctgt aaatatactt ttaaaaggca ccatacccgc attagtaaaa agtaaagttg
    21661 catcatcagg aactaaagga cttgacgggg ttatctcatg tccttttgat gcaaaaaaat
    21721 ccaaataagc ttttctaata tccatgaatt ttcctaaaga aatttttata aaaacatatc
    21781 ataccaaaat tactttaaat taagtaaaac taaaatacaa taaacatttt tatttaattt
    21841 tatttctcta aggtttttta tgaattttat caatcttcaa gcccaatatc tcgcatacaa
    21901 agatgaaatc aatgctgaaa ttgaaagcgt tttatcaagc tcttctttta taggcggtac
    21961 aaagcttaac gaatttgagc aaaatttagc tcatttttta ggtgttaaac acgctatagg
    22021 ttgttcaagt ggaaccagtg ctttatatct tgccttaaga accttagata ttggcaaaga
    22081 tgatgaagtt atagtgccta gttttacttt catagcaaca gctgaagttg tggccttggt
    22141 aggtgcaaaa cctgtttttg tagatataaa tttatcaaat tacaatcttg attttgaagc
    22201 agtgcaaaaa gcaataactc caaaaactaa agctgttata gtagtgagta tatttggaca
    22261 aatgagtgat ttaagggctt tagaagaaat tttaaaagat aaaaatatca ctttgatcga
    22321 agatggtgca caaagttttg gcgcaagttt caaaggagaa aaatcctgct ctatagctaa
    22381 aatttcatgc acaagctttt ttccttcgaa gcctttggga gcttatggcg atggcggggc
    22441 tattttttgc catgatgatg aaattgctaa aaaaataaga attttactca atcacggaca
    22501 aactcagtgt tataaacatg aatttatagg tataaatgga cgccttgaca ccttacaagc
    22561 agcgatttta aatgttaagt taaaatacct agaaaaagaa ttagacaaaa gacaaaaatt
    22621 agcacaaatt tataatgcaa atttaaaaaa ctgtcaaatt ccacaaatta atccaaatgc
    22681 ttttagcgct tatgcacaat acagtgtttt agttgaagat agagctagtg tattgcaaaa
    22741 atttgaaaaa gctaatatac cttatgctat acactatcca acccctttgc ataaacaacc
    22801 ttgctttagt gagttttcaa atttagaact taaaaattca gaatacgcaa gcgaacacat
    22861 cttatctttg cctttttcac cttttttaag tgaagaagag caagagcaag ttatttgtat
    22921 ttttaaagat tgattccatg aaaataggta tcataggcct tggaaaaatg gggcaaaacc
    22981 acttaaatga acttagtaaa aattctcatt ttaaacttaa tgcacttttt gatctttgca
    23041 aaaatccaaa cctaaatatt tttgatgata ttttttatga tgatctggat aaatttttaa
    23101 atcaaaataa tgatattatc atcatagcaa cacctacaaa ttcacattta acaatagcaa
    23161 aaaaagtttt taaacaatgc aaatgcgttt taatcgaaaa gcctttagct ctaaatttaa
    23221 aagaaataga cgaaatttca aatttagcta aagaatacag cataaaagta ggtgtaggtt
    23281 tttgcgaaag atttaatcct gcggttttag ccctaaaaaa agagcttgaa aatgaagaaa
    23341 ttatcagcat taacatacaa agattttcac cctacccaca aagaatcagc gatgtaggga
    23401 ttttgcaaga tttggctgtg catgatcttg atttgctttg ttttttaagc aaacaagaaa
    23461 taacaaaaac caatttgctt aaaaaataca cccaagatca aacaagagaa agtgaaagca
    23521 ttattctatg tgagcttgaa aaatgtattg ctagcataca tcaaagttgg aatagcacac
    23581 aaaaactaag aaaaattcat cttattacta aaaatcattt ttatgaagcc aatttaaatg
    23641 acttttcttt attaaaagat ggaaatttta tagaacttac tcaacaaagt ccactttttt
    23701 cagaacacga agctttgtta aaacttatcg ataatcaacc caatcattta gccagcacga
    23761 gcgatgctta caaagttcaa gaaattttag aaaggtttgc gtgaaattag ttttattttt
    23821 aaatatgggc ggagctacga atttacaaga ttgtgaagtt tttttaaaaa atatgtttaa
    23881 tgatccttat attttaggaa tcaaaaatcg atttttaaga aaatttgtag catggatcat
    23941 aacaaaggct cgcgttaaag ccatgcaaga aaactataaa aaaatgggcg gaaaatcccc
    24001 tttaaacgaa cttactcaaa gcctgtgtga caagcttaat ttaaaacaag atgaatttaa
    24061 atttgatttt gtaaatcttt atgttcctcc ttttgccaca gaaattttgc aaaaatacac
    24121 tttaaatgca agtgatgaaa tcattctttt tccactttat ccgcaccatt cttgcaccac
    24181 agtaacttca tctttagaag ttctgcaaaa tgaaatttca aagcaaaaaa ttcaagcaaa
    24241 agtaaaaact atagatattt tttacaaaaa tgagctttat aacgagatga tagtttcgca
    24301 cattttggct aaaaaaagta aatttgatgc caaaattttg attttttcag cgcattcttt
    24361 accacaaagc attattgaca aaggtgattt atatgaaaag catgtaaatg atcatgtaga
    24421 aattttaaaa gaaaagctaa aagatcattt tgatgaattt attttagctt atcagtctaa
    24481 actaggccct gtaaaatggc ttgaaccaaa tacaagcgat gttttggcaa atttaaacga
    24541 taaagctctg atttacccta tttctttttg cattgattgt tctgaaacga tttttgaact
    24601 aggtatggag tataaacatt tatcaaaata caattatgat ttgataagtt gccctaatga
    24661 tagtgatgaa tttatggaat ttattttaaa gtatttatct gatcttaact aagaatgaat
    24721 ttgagaacct tgtctatcat ttttttaaac ttttttggta aaaatttagc cgactaaacc
    24781 aaagtataag ctttttctcc gtgcaaactc acatctaagc ctttttgttc tacttctttt
    24841 ttcactctta agtctgtaaa acaagaaatg atcttaaaaa ataataaagc ttatgagagc
    24901 taaaaaaatc atacaaatca taatagtaag aatttgctct tttaaaagct ctaaacttcc
    24961 actgataaaa aatccctccg ccaagtgcat ttttggtaat cacattagga tttgctttaa
    25021 cacttgcaaa aagccctgta gcgattcctt cacaaacacc tccgattccg tgcaaagaaa
    25081 aaacatctaa agaatcatcc tatttgagtt tgtatttaat aaaactcaaa ctaaaataac
    25141 aaaatgcaga agacaaagcc actataacaa gaaaagcata attatctaca taaccgcaag
    25201 ctggagtaat ccctacaagc ccactaagcc cacctaaaat agtcggtttt tatagatgag
    25261 ccctcaagca ctacccaaga taaaaagcca caagctgctg atataatact tactataaaa
    25321 gcattgatag caatatcatt catttcgcca gcacttccag cattaaaacc cagccatcct
    25381 ataaaaagca aaatcacacc taagaaagca taagaaatag aatgcgcgtt tttatcctca
    25441 tcatcacttt ttctagcacc cactatcaaa gctcctacaa gtccagcaac cccagagcta
    25501 atatacacaa caccaccccc agcaaaatca aggcttcctc ttttaagtaa aaacccttcg
    25561 ctactccaaa tcatatgcgc taacacatca taaactaaag tactccaaaa aagtaaaaat
    25621 atcaccaaaa cacccagttt aattcttcca accaaagagc ctgttatgat ggcagatgca
    25681 ataagtgcaa acatcatttg aaaaatcata aaaagaatat ttgaaacacc tgaagcatta
    25741 tatccgctaa taccctctaa gagaaaattc tcgaaatttc ctacaagccc aagtccttca
    25801 tctttgccaa aagaaaagct aaatccaagc actacccatt gtaaagtaat gacaccaaaa
    25861 gcaataaagc aattcattat ggtattgaga gtatttttac ttcttaccat acccgaataa
    25921 acattgccaa agttggagtt ataagcaaaa ctagtaaagt acacaacaca ataaaacttg
    25981 aatttatcgt attcatttac ttaccctttc ttacaaaata tacttgcgag ataatta
//
LOCUS       DAPIWJ010000012        25825 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.012, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000012 DAPIWJ010000000
VERSION     DAPIWJ010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25825)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25825)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25825
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.012"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            81..1916
                     /locus_tag="RJ259_000374"
     CDS             81..1916
                     /locus_tag="RJ259_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HDV7366115.1"
                     /translation="MGEFSRRDFIKTACISVGALAASSSGVYALDDSSKMDKDINLPS
                     CDVLVIGSGGAGLCAAAAVRKENPKLSVVVATKMMPSRNATCMAEGGINGVTDFSNGD
                     SYKLHAYDTIKGGAYLVDQDAALKFCELAGKAIFNMDFIGTLFSRNEQGGVAQRLMGG
                     ASKKRCNYSADKTGHILMHSCLDDAISSGVKFLMNHELLDIGVVDGKCEGVVLRDIQS
                     GGIYPVLCKALVIATGGYTRIFYNRTSTPFIATGDGVAAALRAGLGFEDPEMIQFHPT
                     GVANGGTLITEAARGEGGYLLNNRGERFMKNYHEKMELAPRDVVARAIETEIREGRGY
                     GEGLGAYVLCDVRHLGKEKILKDLPKIRHTAMLFENIDLVDTPVPIRPTAHYSMGGIE
                     VAKFEDMGTKIAGIYVGGEASCISIHGANRLGGNSLADAVVTGHLAGIGATNYAKDAS
                     FGKGAKTHELAQKWQVRFKEITNNGGNGQEMYELREELGSQNWDNMGIFRTQEKLDLL
                     AKKLEDIQARYEKIRIPNPNEVMNTAFTDYVELGNLILLSRCACLAARNRLESRGAHT
                     REDYPKRDDKNFLKHSIVNLENDELKLSYKDVVVTEFSLDGRRVQ"
     gene            1913..2878
                     /locus_tag="RJ259_000375"
     CDS             1913..2878
                     /locus_tag="RJ259_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HDV7366116.1"
                     /translation="MKIIIDRFNGKEKYEQSYDIDDKDIQGKTLLSLLLFIKKTKDIT
                     LNFTASCQSAICGACAVRVNGHSYLACDTKMQDLLKEYDNPSSIRISPLGNFRVISDL
                     IVDWEPSIENLRKIRPAMVAKNEFSAEKGCKQSQEEFDRISKQWDCILCGSCASECNK
                     LEADSSDYMQPFVFTHAWRAAADSRGKDPMLHVKPSVMNGLWLCVHCQECADRCPKGI
                     SSVSDIANLRVMAIKKGLNEGLGPDHAEAFYKDLVEGSGRLNEIYLALRSEGVIGSMG
                     KTDIAFKLMRAGKMNPMHVFGEGEIEGYKDLVKMIKAAQEAAVKE"
     gene            2882..3739
                     /locus_tag="RJ259_000376"
     CDS             2882..3739
                     /locus_tag="RJ259_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoB--CoM heterodisulfide reductase iron-sulfur
                     subunit B family protein"
                     /protein_id="HDV7366117.1"
                     /translation="MQKEYAFFPGCVLSQAAKESKISLEAIAPILGWKLNEIKGWSCC
                     GASQAQCVDPIATLVANARNIALAEEMKMPMLTTCSTCMLTLTKAKNTLDKGAKERIN
                     IFLAQGGMKYQGSTPITSLLWELYEDLDNLKSKVKKPLSNLKVALFYGCHSLRPEDAF
                     GKKESSTNPKSFESVVEVLGAKIVPFEKRLDCCGFHASYPAEKSVKKMSSQIVNNASE
                     NQADCVVTPCPLCQMQLDIYQERFQDYTNSKARLPIIHLSQLVGLALGLSKEMVGLDY
                     NIIDASKIA"
     gene            complement(3763..4431)
                     /gene="tenA"
                     /locus_tag="RJ259_000377"
     CDS             complement(3763..4431)
                     /gene="tenA"
                     /locus_tag="RJ259_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HDV7366118.1"
                     /translation="MMLFSNLIKENQKIWNAYLHHDFVKKLEDKSLKQENFLFYLKQD
                     YIYLLNYAKCYARLALNSNTAKELRFAMKFQNYIVEGEMELHRAILSLGINADELDIK
                     DESLVNIAYSRYMLSVGENGDFLDMLVALSACAIGYAKIGAEIINRLKNENLKDHPYK
                     EWILTYGSENFQNEAKEFEDFVNSYTSSVGAQKFQKLSEIFHTVTRLEVAFWEHSLRM
                     ELNL"
     gene            4541..4774
                     /gene="acpP"
                     /locus_tag="RJ259_000378"
     CDS             4541..4774
                     /gene="acpP"
                     /locus_tag="RJ259_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDV7366119.1"
                     /translation="MATFDDVKAVVVEQLSIDADAVKMESKIIEDLGADSLDVVELIM
                     ALEEKFEVEIPDSDAEKLIKIEDVVNYIDNLKK"
     gene            4801..6015
                     /locus_tag="RJ259_000379"
     CDS             4801..6015
                     /locus_tag="RJ259_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HDV7366120.1"
                     /translation="MKRVVVTGIGMINALGLDKESSFKAICNGESGVNKITLFDATDF
                     PVQIAAEVKNFDPLEVVDGKEVKKIDRFIQLGIKAAREAMQDAGFSEELDKEEFGIVS
                     ASGIGGLPNIEKNSIICSERGPRKISPFFIPSALVNMLGGLISIEHGLKGPNISCVTA
                     CAAGTHAIGEAYKSIALGNAKKMLVIGAEAAICPVGIGGFASMKALSTRNEDPQHASR
                     PFDKERDGFVMGEGAGALVFEEYEEAKKRGATIYAELIGFGESADAHHITSPTLDGPL
                     RAMKKALNMAGNPKVDYINAHGTSTPVNDKNETAAIKELFGNNIPLISSTKGQTGHCL
                     GAAGAIEAVVSVMVLRDGVVPPTINQLVKDDECDLDYIPNISRKVDLKVVMSNSFGFG
                     GTNGCVVFKKVD"
     gene            6017..6955
                     /gene="accA"
                     /locus_tag="RJ259_000380"
     CDS             6017..6955
                     /gene="accA"
                     /locus_tag="RJ259_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HDV7366121.1"
                     /translation="MASYLDFEKNIQQIDEDIINAQIKGDTEAVSILKKNLEKEISKT
                     YKNLSDFQRLQLARHPDRPYALDYIELILNDAHEIHGDRAFRDDPAIVCFMGYLGEKK
                     IIVIGEQKGRGTKDKIARNFGMPHPEGYRKALRVAGLAEKFQIPILFLIDTPGAYPGI
                     GAEERGQSEAIARNLYELSDLKIPTIAIVIGEGGSGGALAIGVADKLAMMKNSVFSVI
                     SPEGCAAILWNDPAKSEAATKAMKVTADDLKSQGLIDDVIDEPTNGAHRNKEAAAVAI
                     ADYVKKSLNELENIDVRELSANRMQKILKLGAYQEA"
     gene            7089..7676
                     /locus_tag="RJ259_000381"
     CDS             7089..7676
                     /locus_tag="RJ259_000381"
                     /inference="COORDINATES: protein motif:HMM:NF019335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDV7366122.1"
                     /translation="MTQIKNMKFKKSLLCFLILSGALLKAEETYQLNDVVVSASGFEQ
                     DLVDAPASISIITKEELEKKPIKDIGEAIGDIPGVDVTMDKTGTYDFSIRGFGSSYTL
                     VLIDGKRQSVANGFYTNVFKGSESGYLPPLSMIERIEVIRGPASTLYGSDAVGGVINI
                     ITKKNPDKIEANIEFNTLLQQHSNHYGNAGVLMLM"
     gene            7685..8224
                     /locus_tag="RJ259_000382"
     CDS             7685..8224
                     /locus_tag="RJ259_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HDV7366123.1"
                     /translation="MIEDTLSISARLKYYDKAASDLKWPTPVWNNNNQKPDNYQQRPD
                     NYQIAIHSPGAFTSLGFGSRLNWTVDDKNNIYFDIERYINEISVNSISSRAIKSEKQL
                     FKDNIVLNHDGNYDFGSTNSYLQYGSTKDKELHSQIWVGEGKVVLPWNLGQYGNLVNT
                     FGARIDYEMLKNDQASAGS"
     gene            8252..9181
                     /locus_tag="RJ259_000383"
     CDS             8252..9181
                     /locus_tag="RJ259_000383"
                     /inference="COORDINATES: protein motif:HMM:NF012801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDV7366124.1"
                     /translation="MVALYGENEYFITDDLIFTTGLRYIYSNLFDSEFTPRIYLVYHL
                     NDNIAFKGGVSKGYKTPSAKQLTNGYYNYANGNALFGNPDLKPEESINYELGADFRVF
                     DFAHYSITGFITDFTNQISSEYLTGMQNGINCSNGTVCKRPINLGKTQTKGIEFAFNT
                     KTYNGFSLNSSYTFMDNRYKDSQKNWFGGDRIENLPRHIAMLKLNYERGKFNSYIKTR
                     ARLDTIAKARVGGNGSLPWQKYKPFYIVDLGINYKINKQSSLSFAVQNLFDKNFFDPQ
                     VTRWDGANPAGYANRYQDYTEGRSFWLSYKYDF"
     gene            9264..9860
                     /locus_tag="RJ259_000384"
     CDS             9264..9860
                     /locus_tag="RJ259_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HDV7366125.1"
                     /translation="MAFKNLKELSFEKSNYIKPKRFAYESNGRLCTWDFIESKDSVSV
                     LLYHKELESFIFVRQFRIPLWYHQMHDKDYVKDDDMGYTIELCSGLVDKKLSLEEIAK
                     EECIEELGYAPKNLEKIGDFYTGFGSGVSKQSFYFVEVDEKDKISSGGGVDDEEIEAV
                     YVKVQDFEKKCKNMIRTPLLDFAYMWFLKEKWGKLKII"
     gene            complement(9892..10989)
                     /locus_tag="RJ259_000385"
     CDS             complement(9892..10989)
                     /locus_tag="RJ259_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CZB domain-containing protein"
                     /protein_id="HDV7366126.1"
                     /translation="MFGSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQ
                     AALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIA
                     NSINASLGNITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSN
                     AHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQ
                     LADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNAITIANTEDISKDIT
                     QHSIINKCEVAENASLDLFNVFKEMLDESDH"
     gene            complement(10999..11214)
                     /locus_tag="RJ259_000386"
     CDS             complement(10999..11214)
                     /locus_tag="RJ259_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HDV7366127.1"
                     /translation="MLHEYRELMSELKGKDAHFDKLFDRHNELDDMIKDAEEGRTSLS
                     SMEISTLKKEKLHVKDELSQYLANYKK"
     gene            complement(11399..11593)
                     /locus_tag="RJ259_000387"
     CDS             complement(11399..11593)
                     /locus_tag="RJ259_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HDV7366128.1"
                     /translation="MARVCQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTLEDGT
                     TRKMRIAASTLRTLKKQNSK"
     gene            11733..12380
                     /gene="rpe"
                     /locus_tag="RJ259_000388"
     CDS             11733..12380
                     /gene="rpe"
                     /locus_tag="RJ259_000388"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HDV7366129.1"
                     /translation="MYVAPSLLSANFLKLEEEVKAIEAAGADLLHIDVMDGHFVPNLT
                     FGPCVIEKISTISKLPLDVHLMVKDVSKFVDLFISLKPKFISFHMESEVHPIRLCEYI
                     RSQGIHPAIVLNPHTPIDSIKHMLEFVDMVLLMSVNPGFGGQKFLPLIHEKIKELRQM
                     IDKKNAKVFIEVDGGVNGLNASDLEESGADILVAGSYIFSSNDYKTAISSLKLEF"
     gene            12377..13147
                     /locus_tag="RJ259_000389"
     CDS             12377..13147
                     /locus_tag="RJ259_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HDV7366130.1"
                     /translation="MSLQQIDQIISILNKQSKPYDWVMQEFAKVEELKNFDLDLETFE
                     LLGLGLTLNKDNIFTLKTRTTKIKDEIFCIVDIESTGGVSKGEILEIGAVKIQNSKEI
                     GRFQSFVKVKEIPKNITELTGITYEMVENASSLAKVLSDFRLFLKDSIFVAHNVRFDY
                     SFISKALNECGFGILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDAL
                     AAAEIFKYCLGKLPYHIKTTEELINFTKTATHKAKINI"
     regulatory      13161..13265
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            13322..14614
                     /gene="thiC"
                     /locus_tag="RJ259_000390"
     CDS             13322..14614
                     /gene="thiC"
                     /locus_tag="RJ259_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HDV7366131.1"
                     /translation="MKTQMNYAKEGIFTKEMQIVAQKENLSKDFLLENIACGKIIIPA
                     NINHKSLDPNGIGFGLRTKVNVNLGVSNDCVDYSEEMKKVELAHKFDIEAIMDLSNYG
                     KTSRFRDELVNVSKAMIGTVPVYDAVGFLEKDLKQIGAKDFLDVVYHHAKSGVDFMTI
                     HAGINSRAAHIFKQSKRLTNIVSRGGSVLYAWMMMKDAENPFFEYYDDLLDICLKYDV
                     TLSLGDALRPGSTHDASDGAQISELIELSLLTQRAWDVGIQVMIEGPGHMAINEIEAN
                     MQLEKRLCKGAPFYVLGPLVTDIGAGYDHISGAIGGAVAAASGADMLCYVTPAEHLRL
                     PNLEDVREGIVATKIAAHAGDIAKLPKERARDDEMSKARQEIDWEKMFKLAIDGEKAK
                     KMFNERRPDDLNSCSMCGKMCAMNTMNQILKGEDVSLA"
     gene            complement(14606..15124)
                     /locus_tag="RJ259_000391"
     CDS             complement(14606..15124)
                     /locus_tag="RJ259_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366132.1"
                     /translation="MKDKSLEEIDLLKLIICALSFISVCTALILFLLLPTLKNYKQAN
                     LRENSQLAILKAAKLKFDFSEDKISTLRSENNKSLEQFEQNFNIGNFDIFLQKYFQNV
                     KIQETKPEKQEKYLKNRLAIKATMNNPRRLYDFIDALKNYNNLIKLDYPLNLKAGEQG
                     ISIDLTLKVYSS"
     gene            complement(15114..15641)
                     /locus_tag="RJ259_000392"
     CDS             complement(15114..15641)
                     /locus_tag="RJ259_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366133.1"
                     /translation="MTYSFIQPRKKPIFTLFDKIWLGLFGFSILFILLVYFTYTIKIA
                     LINSSIDNEKQQVIVLQNQTKQNEMLYEILFDQSQIAKHFNTQNQIVKESLRNLFDII
                     VKTDNITLESVEQDEYSLKLIGVTPTREMFTLLLETPLKSIFDQSYTTYYRLDNGWYR
                     FVSISKQIPGVADER"
     gene            complement(15638..16597)
                     /locus_tag="RJ259_000393"
     CDS             complement(15638..16597)
                     /locus_tag="RJ259_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clan AA aspartic protease"
                     /protein_id="HDV7366134.1"
                     /translation="MLFLLKKIFPQLFISIILEDKKNIVKASIYRGNKLISSNEKTFD
                     KSENLLEYIKNLSKHFLFYHTALFLDAKEQGLIPSTNIQDCEHFNIGKISLQHILFNN
                     ALVYTATEHVEYYSELFEEYRGLDFLYSPFALLYYNIQKEKQPDDQILLYGFKQGHLL
                     AIIVAKGNTILYGDFKIFEQELGLELELPSEDNQEIENNNDDTEVTLDNFNEALNNKF
                     DLLDQENNLETLDNNDNFNLDELNQFSNDMELCRYIITSIEKFYNDDKYAGVFINGIL
                     LYSESDINISAIDFLESETFLEIKTKQINTLDLMIELMQKELK"
     gene            complement(16599..17228)
                     /locus_tag="RJ259_000394"
     CDS             complement(16599..17228)
                     /locus_tag="RJ259_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HDV7366135.1"
                     /translation="MGKSFKIHCLTYIIFILQWLIFLSCKKHYKGEKVDRKAGVILFW
                     HGKLALMPFAFRHYRQKNKKAYVMISHHKDGEQIAKIIKLFGLDTVRGSTSRGASSAL
                     RAAFKVLEQNDDIVITPDGPRGPYHSISDGSIILAQKKELKIRILNYEANRFWKFKSW
                     DKMILPKPFSKITYSLSEPLDILSLDKEKAKEFLMKQFDKISLADQFKE"
     gene            complement(17212..18513)
                     /gene="miaB"
                     /locus_tag="RJ259_000395"
     CDS             complement(17212..18513)
                     /gene="miaB"
                     /locus_tag="RJ259_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HDV7366136.1"
                     /translation="MSAKKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADL
                     ILINTCSVREKPVHKLFSEVGGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVL
                     GARNISKITQAIKTPKFMGVDIDYDESEFAFADFRNSIYKSYINISIGCDKHCTYCIV
                     PHTRGDEISIPFNIIYKEAQKAIEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLE
                     ELSTIEGLERIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGY
                     TKEWYLNRALKLRELCPNVSISTDIIVAFPGESEKDFEETVDVLEKVRFEQIFSFKYS
                     KRPLTKAATMPNQIDEEIASRRLSTLQNRHSEILDKIVKKQENKTFKVLFEELRAGNS
                     IAGRTDNNFLVQVEGSEELLGQFKEVKITNAKRMVLYGEIV"
     gene            complement(18510..18752)
                     /locus_tag="RJ259_000396"
     CDS             complement(18510..18752)
                     /locus_tag="RJ259_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366137.1"
                     /translation="MELKLARTLINEKPKNISLEKIEEAIEKEGQKFFYFDKDNTHKQ
                     LIALVNHFEKKGVSIYHRTVKYGLDDNDFMYEVHIL"
     gene            18880..19968
                     /gene="nusA"
                     /locus_tag="RJ259_000397"
     CDS             18880..19968
                     /gene="nusA"
                     /locus_tag="RJ259_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HDV7366138.1"
                     /translation="MEKIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEF
                     FVDPKNLNLYQKITIVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENL
                     GRTAVNTLHKELEYHIQKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRA
                     FLPRKNRIKGEKFKIGDVVKAVIRRVYTDKGIKIELSRTSPKFLECLLEAEVPEIKDG
                     YVNIIGCARIPGERAKIILQANGTNIDPVGATVGVKGVRINAVSKELHNENIDCIEFT
                     NESEILISRALAPAIVNSVKIEDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIE
                     LNELSSSQLNNAISNEEAMKNLQDLFKI"
     gene            complement(19984..21171)
                     /locus_tag="RJ259_000398"
     CDS             complement(19984..21171)
                     /locus_tag="RJ259_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7366139.1"
                     /translation="MNYIELLKNNKNIRILASVQFIVYFGAWFSQTGVFTLLVELNAP
                     TWATATSAMLAFLPGVLLAPINGVIVEKNKPKKLLLSMISIELISIFCLIFVTSLSML
                     WLLFILIFIRLCVASIYFQAEMSLLAKILTPQELKLANEMHSVIWAISYTAGMASAGI
                     FIYFLGVKTAFLFDCILILIGISFLVRLSIPDFHQKTQSRFFTMIKEGFFYVLNNKII
                     FHLILLHAFIGLTAYETLVTLLAQHQYKEVLSAALVIGFLNAVRACSLAIGPMVLSKF
                     INDKNLFYMYLGQGLGIILWALTQFNFYISFLGLIGAGFFTSALWAYTYTMIQKNADK
                     EYHGRVIAYTDMIYLSFSAIISMLMGFLFEIGLSLELITGLLGMIFIFAAFYWKWFYK
                     KYL"
     gene            21245..22291
                     /locus_tag="RJ259_000399"
     CDS             21245..22291
                     /locus_tag="RJ259_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HDV7366140.1"
                     /translation="MKRLDKKEALDLLHHASLTELGEMAYKRKLELHPEKITTFVVDR
                     NINYTNVCCIDCSFCAFYRHHKEDDAYILSFEEIGKKIEELEAIGGTQILFQGGVHPK
                     LKIEWYEELVSWIKEHYPNITVHGFSAVEIAYIAKASKISITEVLKRLQAKGLFSIPG
                     AGAEVLSDRVRDIIAPNKCDTATWLEVHRQAHKIGMKSTATMMFGTVENDEEIIDHFE
                     HLRKLQDETGGFRAFILWSFQSDNTALIQKHPEIMKQSSNKYLRLLALVRLYLDNFKN
                     LQSSWVTQGSLIGQLALKFGANDLGSTMMEENVVSAAGASYRMNQDEMIRLIRSLGEN
                     PAKRNTAYEILERF"
     gene            22291..23511
                     /locus_tag="RJ259_000400"
     CDS             22291..23511
                     /locus_tag="RJ259_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HDV7366141.1"
                     /translation="MQYLESRGIKIPFIFEKNSDFPIVVLKLVFRNCARSYDEIAGLA
                     KMFSRILNEGVDDKFFKDLEFRAINLEASSGFESLEINLSCLKENFDFALKSLEKLLL
                     KPRIEEKTLQKLKINALGELASKNSDFDYLAKNLLNAQIFKCKEFQSPNDGDEKSIET
                     LSLKDLQNFYKNFIHLSDLVVILGGDLEEKQAKEDLLKLLSKLQIGKKNTPKKYELGK
                     NIKDEILVRPESEQAYIYFATPFFADFKDKDLYLAKIALFVLGQGGFGSRIMEEIRVK
                     RGLAYSAYAMLDMNMSFSRVFGYLQTKNESAKEAKKIVKELFEDFIKNGMTQNELDQA
                     KNFLIGSTPLRYESLSKRLSMSFNEFYQGLNLGYYKEELKLMEKVKLETINAYIKKHQ
                     ELLNISFASIQNEN"
     gene            23501..25324
                     /gene="recG"
                     /locus_tag="RJ259_000401"
     CDS             23501..25324
                     /gene="recG"
                     /locus_tag="RJ259_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HDV7366142.1"
                     /translation="MKIKESDFEFFKKLKIRSAIDLALLLPKKIENLNPSKNPKENEI
                     CTQKITIKSVSSRKNQLFGLGFCEEWQENISFVFFHPRAWHFGICKVGKELIFNAKLS
                     HFNHTWQFNNPKILTSFEGFSPKYQILGLKDTKIAAFIHKYLNYENLKESGIEDKYIH
                     FLLNLHAYDEKSFFMFENLQNFSKDLKYIEIYNFLKRLKAKKTHFKAHQINVFNIANW
                     LKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAALMVYPKQAI
                     LMAPTSILAYQLYEEAKKFLPDFMNILFIKGGKKEKDLEQNIQKANLVIGTHALIHLE
                     SHNAVLVMIDEQHRFGSAQREKIHSLNKQEFAPHFIQFSATPIPRTLSMIQSELLNFS
                     FIKQMPFKKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLLSASDKIPYLSLEQ
                     AKEYWQSHYEKVFVTHGKDKQKDEILERFRDEGNILLSTTVVEVGISLPRLSMIVIVG
                     AERLGLATLHQLRGRVGRVGLKSACYLYTKLKEIPSRLKEFASTLDGFKIAELDLKNR
                     LSGDLLDGFMQHGNEFKFFDFSKDEEILEKVKKDLAKKLPN"
     gene            complement(25321..25704)
                     /gene="ctb"
                     /locus_tag="RJ259_000402"
     CDS             complement(25321..25704)
                     /gene="ctb"
                     /locus_tag="RJ259_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin Ctb"
                     /protein_id="HDV7366143.1"
                     /translation="MKFETINQESIAKLMEIFYEKVRKDKDLGPIFNNAIGTSDEEWK
                     EHKAKIGNFWAGMLLGEGDYNGQPLKKHLDLPPFPQEFFEIWLKLFEESLNIVYNEEM
                     KNVILQRAQMIASHFQNMLYKYGGH"
BASE COUNT         8897 a         3433 c         4637 g         8858 t
ORIGIN      
        1 tttggatttt tggcatgcgg ttatgtaaga ttgacttaca ttaaaaatta ttattaattt
       61 ttttaaataa ggagaatgat atgggtgaat tttctagaag agattttata aaaacagcct
      121 gtattagtgt aggagcttta gctgcaagtt caagtggagt ttatgcttta gatgattcat
      181 ctaagatgga taaagatata aatttacctt cttgcgatgt tttggtaatt ggatcaggtg
      241 gagcaggttt gtgtgctgca gccgcagtga gaaaagaaaa tccaaaatta agcgttgtag
      301 tagctacaaa gatgatgcca tcgcgtaacg caacttgtat ggcagagggt ggaattaatg
      361 gagttactga tttttctaat ggagattcct ataaattaca tgcttatgat actattaaag
      421 gcggagctta tttggtagat caagatgcgg ctttaaaatt ttgcgaatta gctggaaagg
      481 ctatttttaa tatggatttt ataggaacct tgttttcaag aaatgagcaa ggtggagtag
      541 ctcagcgttt aatgggagga gcttctaaga aacgctgtaa ctattctgca gataaaacag
      601 gtcatatttt aatgcattct tgtttagatg atgctattag tagtggtgtg aaatttttaa
      661 tgaatcatga acttttggat ataggtgttg tggatggaaa atgcgagggt gtcgttttaa
      721 gagatataca aagcggtgga atttatcctg tgttatgcaa agctttggtg attgctacag
      781 ggggatacac aaggatattt tataatagaa cttcaactcc ttttattgcc acaggagatg
      841 gtgtggcagc tgctcttaga gcaggacttg gttttgaaga tcctgagatg atacaatttc
      901 acccaacagg agttgcaaat ggtggaactc ttattacaga agcggcgcgc ggtgaagggg
      961 gatatctttt aaataatcgt ggtgagcgtt ttatgaaaaa ttaccatgaa aaaatggagc
     1021 ttgcaccgcg agatgtggtt gcgcgtgcta tagaaacaga aattcgtgaa ggtagaggtt
     1081 atggcgaggg acttggagct tatgttttgt gcgatgtacg ccacttagga aaagaaaaaa
     1141 ttttaaaaga tttaccaaaa attcgtcaca ctgcaatgct ttttgaaaat attgatttag
     1201 tagatactcc tgtacctatc cgtccaacgg cgcattattc tatgggtgga attgaagtgg
     1261 ctaaatttga agatatgggt actaaaattg ctggaattta tgtaggtgga gaagcttctt
     1321 gcatttctat acatggagct aatagactag ggggaaattc tttagccgat gcagttgtaa
     1381 cagggcattt agcaggcatt ggtgcgacaa attatgctaa agatgcaagt tttggaaaag
     1441 gggcaaaaac tcatgaactt gctcaaaaat ggcaggttag atttaaagaa attacaaata
     1501 atggcggaaa tggtcaagaa atgtatgaat tgcgagaaga gctaggaagt caaaattggg
     1561 ataatatggg gatttttaga actcaagaaa aactcgatct tctagcaaaa aaattagaag
     1621 atatacaagc gagatatgaa aaaattcgta ttccaaatcc taatgaagtg atgaataccg
     1681 cttttacaga ttatgtagag cttggtaatt tgattttact ttctcgctgt gcttgtttag
     1741 cagctagaaa tagacttgaa agccgtgggg ctcatactag agaagattat ccaaagcgag
     1801 atgataaaaa tttcttaaaa catagcattg taaatttaga aaatgatgaa ttaaaactta
     1861 gttataaaga tgtcgtggta actgagtttt cacttgatgg aaggagagta caatgaaaat
     1921 tatcatagat cgttttaatg gcaaggaaaa atatgaacaa agttatgata ttgatgataa
     1981 ggatatacaa ggaaaaactc tgctctctct tttgcttttt atcaaaaaaa caaaagatat
     2041 tactttaaat tttaccgcct cttgtcaatc tgcaatttgt ggggcttgtg cagttcgtgt
     2101 gaatgggcat tcttatcttg cttgtgatac taaaatgcaa gatttgttaa aagaatatga
     2161 taatccttca agtatacgca tttctccgct tggaaatttt agagtaattt ctgatttaat
     2221 tgtggattgg gaaccttcta tagaaaattt aagaaaaatt cgtcctgcca tggtggcaaa
     2281 aaatgaattt tcagcggaaa agggctgtaa acaaagtcaa gaagaatttg atcgtattag
     2341 caagcaatgg gattgtattt tatgtggtag ctgtgcttca gagtgtaata aattagaagc
     2401 agatagtagc gattatatgc aaccttttgt ttttactcat gcttggcgtg cagcggcgga
     2461 ctctcgaggt aaggatccta tgttgcatgt aaaacccagc gtaatgaatg gactttggct
     2521 ttgtgttcat tgtcaagagt gcgctgatcg ttgtccaaag ggtataagtt cagtaagtga
     2581 tatagcaaat ttaagagtga tggcgattaa aaaaggttta aatgaaggct tagggcctga
     2641 tcatgctgaa gctttttata aagatttagt tgaaggttca ggacgcttga atgaaattta
     2701 tcttgctttg cgttctgagg gtgttatagg ttctatgggt aaaacagata tagcttttaa
     2761 acttatgcgt gcaggaaaaa tgaatcctat gcatgttttt ggcgagggtg aaatagaagg
     2821 gtataaagat ttggttaaaa tgataaaggc ggcacaagaa gctgctgtta aggagtaaaa
     2881 tatgcaaaaa gagtacgctt tttttccagg ttgtgtttta tctcaagctg caaaagaatc
     2941 taaaatttca cttgaagcta ttgcacctat tttgggttgg aagttgaatg aaattaaggg
     3001 gtggagttgt tgtggggctt ctcaagcgca gtgtgttgat cctattgcga ctttggtagc
     3061 taatgcaaga aatattgctt tagcagaaga gatgaaaatg ccaatgctta caacttgtag
     3121 tacttgtatg ctaactttaa ctaaagcaaa aaatactctt gataagggtg caaaagaacg
     3181 catcaatatt tttttagcac aaggtggaat gaaatatcaa ggttcaacgc ctattacaag
     3241 tcttttgtgg gagctttatg aggatttgga taatttaaaa agcaaggtga aaaagccgct
     3301 ttcaaattta aaagtagctt tattttatgg ttgccatagt ttaagacctg aagatgcttt
     3361 cggtaaaaaa gaaagttcaa ccaatccaaa aagttttgaa agtgtagtag aagttttagg
     3421 ggctaaaata gttccttttg aaaaacgcct tgattgttgt ggttttcatg cttcttatcc
     3481 tgcagaaaaa tctgtgaaaa aaatgtctag tcaaattgtc aataatgcaa gtgaaaatca
     3541 agctgattgt gttgtaacac cttgtccact ttgtcaaatg cagcttgata tctatcaaga
     3601 aagatttcaa gattatacta attctaaagc aagattgcct attattcatt tatcacaatt
     3661 agtaggactt gcattaggac tttctaaaga aatggttggt ttagattata atattattga
     3721 tgcaagtaaa attgcataaa aacatgggca aaaagcccat gtttaaagat ttaattccat
     3781 tcttaaagaa tgctcccaaa aagccacttc taagcgtgtt acagtatgaa aaatttcgct
     3841 gagtttttgg aatttttgtg caccaacact tgaagtataa gaattaacaa aatcttcaaa
     3901 ttctttagct tcattttgaa aattttcact tccataggtc aaaatccatt ccttgtaagg
     3961 atgatctttt aaattttcat tttttaaacg atttataatt tcagcaccta tttttgcata
     4021 gcctatagcg caagcactaa gagcaactaa catatctaaa aaatctccat tttcacctac
     4081 gcttaacata taacgcgaat aggctatatt gactaaactt tcatctttta tatcgagttc
     4141 atctgcatta atgccaagag ataaaattgc acgatgaagt tccatttctc cttcaactat
     4201 ataattttga aatttcatag caaaacgaag ttcttttgca gtatttgagt taagtgctaa
     4261 tcttgcataa cattttgcgt aattaagcaa ataaatataa tcttgcttga gataaaaaag
     4321 aaaattttct tgctttaggc ttttatcttc caatttttta acaaaatcat gatgtagata
     4381 agcattccaa attttttgat tttctttgat taaattagag aaaagcatca tttttccttt
     4441 atgttttaat attttatttt caagtataat gaaaaactat aaatatttta agctttttat
     4501 agtaaaatac gctttatttt aattttttaa aggagaacaa atggcaacat ttgatgatgt
     4561 aaaagcagta gtagtagagc aattaagtat tgatgcagat gcagttaaaa tggaatcaaa
     4621 aattattgaa gatttaggtg ctgattcttt agatgttgta gagcttatta tggctttaga
     4681 agaaaaattt gaagtagaaa ttccagatag tgatgctgaa aaattaatta aaattgaaga
     4741 tgttgtaaat tatattgaca atctaaaaaa ataatttttt ttcttgcaag gagcttattc
     4801 ttgaaaagag ttgtagttac aggtattggt atgatcaatg cccttggttt agataaagaa
     4861 agttcattta aagcaatttg caatggagaa agcggagtaa ataaaattac tctttttgat
     4921 gctacggact ttcctgttca aattgcagct gaagttaaaa attttgatcc attagaggtt
     4981 gttgatggta aagaagtaaa aaaaattgac cgtttcatac aacttggaat taaagcagca
     5041 agagaagcaa tgcaggatgc tggatttagt gaagaattag ataaagaaga atttggcatt
     5101 gtttcggctt ctggtattgg aggtttgcct aacatagaaa aaaattccat tatttgttcc
     5161 gagcgaggtc cgcgtaaaat ttcccctttt ttcatacctt cagcacttgt aaatatgtta
     5221 ggaggtttga tttctataga gcatggactt aaagggccaa atatttcttg tgttacagct
     5281 tgtgcagcag gaactcatgc tataggagaa gcttataaaa gtatagcttt gggaaatgct
     5341 aaaaagatgt tagtcatagg tgcagaagct gcgatttgtc ctgtgggtat aggtggtttt
     5401 gcttcaatga aagctttatc aactagaaat gaagatccac agcatgcttc aagaccattt
     5461 gacaaagaaa gagatggttt tgtcatggga gaaggtgctg gagctttagt ttttgaggaa
     5521 tatgaagagg ctaaaaaacg cggtgctacg atttatgctg aattaattgg atttggagaa
     5581 agtgcagatg cgcatcatat tacttcacca actttagatg ggcctttaag ggctatgaaa
     5641 aaagctttaa atatggcagg gaatccaaag gtagattata tcaatgcaca tggaacttca
     5701 acccctgtaa atgacaaaaa tgaaacagca gcaattaaag agctttttgg caataatatc
     5761 ccgcttataa gttccaccaa aggacaaaca ggtcattgct tgggtgctgc aggtgcaatt
     5821 gaagcagttg ttagtgttat ggttttaaga gatggggtag ttccacctac aatcaatcag
     5881 cttgtaaaag atgatgaatg tgatcttgat tatattccaa atatatcaag aaaagtagat
     5941 ttaaaagtgg tgatgagtaa ttcttttggt tttggtggca caaatggctg tgttgtattt
     6001 aaaaaagtag attaatatgg cttcttattt agattttgaa aaaaatattc agcaaattga
     6061 cgaggacatt atcaatgctc agattaaagg agatactgaa gctgtatcaa ttttaaagaa
     6121 aaatcttgaa aaagaaattt ctaaaactta taagaattta agtgattttc agcgtttgca
     6181 attagcgcgt catccagatc gcccttatgc tcttgactat attgaactta ttttaaatga
     6241 cgctcacgaa atacatggtg atcgtgcctt tagagatgat cctgctattg tttgttttat
     6301 gggttattta ggagagaaaa aaataattgt aattggtgag caaaaaggac gtggaacaaa
     6361 agataaaatc gctagaaatt ttgggatgcc acatcctgaa ggatatcgca aagccttaag
     6421 agtagcagga cttgcagaga aatttcaaat tcctatttta tttttgatag atactccagg
     6481 tgcttatcct ggaataggtg ctgaagaaag aggacaaagt gaagctatcg ctagaaattt
     6541 atatgaatta agtgatttga aaataccgac cattgctata gttatcggag aaggcggtag
     6601 tggcggggcg ttagctatag gggttgcaga taaacttgca atgatgaaaa attctgtttt
     6661 ttcagtaatt tctcctgaag gttgcgctgc aatactttgg aatgatcctg caaaaagtga
     6721 agctgcaacc aaagctatga aagtaacagc tgatgattta aaatctcaag gtttaattga
     6781 tgatgtgata gacgaaccta caaatggtgc acatcgcaat aaagaagctg cagcagtagc
     6841 tattgctgat tatgtaaaaa aatccctaaa tgaacttgaa aatattgatg tacgagaact
     6901 ttctgcaaat cgtatgcaga aaattttaaa gcttggagcc tatcaagagg cttaggcttt
     6961 tacttcgctt ttttaaataa ttttattatt tataattgtt atcaaaatta agttaattaa
     7021 aagtattctt tttttatact ccaaaaatga ttttaaatat caaaataatt ttttttaaag
     7081 gaattaattt gactcaaatc aaaaatatga aatttaaaaa aagtttactg tgttttttaa
     7141 ttttatctgg agctttgtta aaagcagaag aaacatatca acttaatgat gttgtggtta
     7201 gcgctagtgg ttttgaacaa gatttggttg atgcgcctgc tagtatttct atcattacaa
     7261 aagaagagct tgaaaaaaag ccaattaagg atatagggga ggctatagga gatattccag
     7321 gtgtagatgt gactatggat aaaacaggca cttatgattt tagcatacga ggttttggta
     7381 gttcttatac tctagtttta attgatggaa aacgtcaaag tgttgcaaat gggttttata
     7441 ctaatgtttt taaaggcagt gagtcaggat atctgccgcc tttatctatg atagagcgta
     7501 tcgaggttat acgtggtcca gcttctacac tttatggcag tgatgctgta ggcggtgtga
     7561 taaatattat caccaagaaa aatcctgata aaatcgaagc aaatatagaa tttaatactc
     7621 ttttgcaaca gcactctaat cactatggca atgcgggcgt tttaatgctt atgtagcaac
     7681 tcctttgatt gaagatacat tatcaatttc tgcaaggttg aagtattatg ataaggcagc
     7741 ttctgattta aaatggccta caccggtttg gaataataac aatcaaaaac ctgataatta
     7801 ccaacaaaga cctgataatt accaaattgc tattcatagt ccaggtgctt ttactagctt
     7861 aggttttggt tctaggctta attggacagt agatgataaa aataatatat attttgatat
     7921 agagcgatat attaatgaaa tttcagtgaa ttctataagt agtagggcta ttaaaagtga
     7981 aaaacaactt tttaaggata atattgtttt aaatcatgat ggtaactatg attttggttc
     8041 aactaactca tatttacaat atggtagcac taaggataag gaattacata gtcaaatttg
     8101 ggtaggagaa ggtaaggttg ttttaccttg gaatttaggt caatacggta atttagtaaa
     8161 tacctttggt gcaaggattg attatgagat gttaaaaaat gatcaagcaa gcgcaggtag
     8221 ttaaataaga ggtaaaaatc ttgatcaaac catggttgcg ctttatgggg aaaatgagta
     8281 ttttataacc gatgatttga tttttactac aggtttgcgt tatatttata gcaatttgtt
     8341 tgattctgaa tttaccccta ggatttattt ggtttatcac ttaaatgata atatagcctt
     8401 taaaggaggt gtttcaaaag gctataaaac tccttctgcc aagcagttga caaatggata
     8461 ttataattat gccaatggca atgctctttt tggaaaccct gacttaaaac cagaagaaag
     8521 tataaattat gaattgggtg ctgattttag ggtatttgat tttgcacatt attctatcac
     8581 aggatttatt actgatttta caaatcaaat cagtagtgaa tatttaacag gtatgcaaaa
     8641 tggtattaat tgtagcaatg gcactgtttg taagcgtcct attaatcttg gaaaaacaca
     8701 gactaaaggt atagaatttg catttaatac caaaacttac aatggtttta gcctaaattc
     8761 aagttatact tttatggata atcgctataa agatagtcaa aaaaattggt ttggtggtga
     8821 tagaatagaa aatttaccaa ggcatatagc aatgttaaaa ttaaactatg agcgaggtaa
     8881 atttaattcc tatataaaaa cacgagcaag actcgatact atagctaaag caagagttgg
     8941 tggtaatggt agtttgccat ggcaaaaata taagcctttt tatatagtag atttagggat
     9001 aaattataaa atcaataagc aatctagctt aagttttgca gtgcaaaatc tttttgataa
     9061 aaatttcttt gatccgcaag ttacaagatg ggatggggct aatcctgctg gatatgcaaa
     9121 tcgctatcaa gattatacag aaggaagaag tttttggtta agttataaat atgattttta
     9181 attttttaag gctttaatca cctttatatt ttcaaaaaag caaaaataaa gtacaatgtg
     9241 aaaaataaat aaaaggtttt attatggcgt ttaaaaattt aaaagaactt tcttttgaaa
     9301 aatcaaatta tattaagcct aagagatttg cttatgaaag taatggtagg ctttgcactt
     9361 gggattttat agaatctaaa gatagtgttt cagtgctttt gtatcataaa gaattagaaa
     9421 gttttatttt tgtacgccaa tttcgtatac cactttggta tcatcaaatg catgataaag
     9481 attatgtaaa agatgatgat atgggctata ctatagagct ttgttctggg cttgtggata
     9541 aaaaattatc tttagaggaa atagcaaaag aagaatgtat agaagaacta ggatatgctc
     9601 ctaaaaattt agaaaaaata ggagattttt atacagggtt tggttcaggt gtaagcaagc
     9661 aaagctttta tttcgtagaa gttgatgaaa aagataaaat ttcttctgga ggtggagttg
     9721 atgatgaaga gattgaagct gtttatgtta aggtgcagga ttttgaaaaa aaatgtaaaa
     9781 atatgataag aacgcctttg cttgattttg cttatatgtg gtttttaaag gaaaagtggg
     9841 gaaaattaaa gattatttag gttaaacctt aaaaaggttc aacctaggat tttaatgatc
     9901 tgactcatca agcatttctt taaatacatt gaaaagatca agcgatgcat tttcagcaac
     9961 ttcgcattta ttaattatgc tgtgttgagt aatatctttg ctaatatctt ctgtatttgc
    10021 tattgttata gcattattca tattttcatg aactttttca tgtggctcgt taatttttaa
    10081 gaagctttta ttttgcccaa atctttcttt tcctgtgcta gcaagccatt ttcctaagcg
    10141 acaagatgta tgatcggcta attgctttcc tgatttggaa aaaatttctt tataaccatt
    10201 taatttaaaa gctatatgat ctagttttgc taaagatacg aaagcttctg aagcgatacc
    10261 aactgcattt gaattagtag aatgcgcttc atttactaag tgagtaaatt tttcggaaaa
    10321 actcataata tgagcattag aatctataga aattttttca acttgctcac tttgagtata
    10381 catttcattt gcattttgct ttagaaggtt gatgttcatt tcaacttctg tggttgcttt
    10441 ttgtgttttt tcagctagtt ttcttacttc atcggcaaca acagcaaaac cacgcccatg
    10501 ttcacctgcg cgtgcagctt ctatggcagc gttaagagct aaaagattgg tttgatcgga
    10561 aacatcttta attagattaa ttacattagt aatttcatct acacttctat gcaatgttcc
    10621 tgcaacatct cttgttttat tggctgattc tgtaatattt cccaaagagg cattgataga
    10681 attagcaata tggttaagtt catccatttc agcaagagaa gttttagaat agctagagat
    10741 aacttctgcc ttatttacat tttctaacat atcgccttga ataatagtaa tattttttaa
    10801 aaccccagtt aataaaacat ttaaaagatc tgttttaagt ttagactcta aagccgcttg
    10861 ttctaatgat gtaattttat tttttaattc taaattttcc gattgaaatt tttcaatttt
    10921 atgtgtaaga tttttatttt cttcttcaag tttttgaaga tcagaatggt ttattttact
    10981 tccaaacatt gttttgcctt attttttata atttgctaga tattggctaa gttcatcttt
    11041 tacatgaagc ttttcttttt ttaaagttga aatttccatg ctgctaagag aagttctacc
    11101 ttcttctgca tctttaatca tgtcatcaag ttcattatga cgatcaaata gtttatcaaa
    11161 atgagcatct ttacctttta gctctgacat taattctcta tattcatgta gcataaactc
    11221 tccttgtatt agtgaaattt aaaattcatt taataaggta ttttacacta ttaaaagata
    11281 tttttagctt aaaaaataat aaaattaata ataattttta aatgtgtgtt atataagtga
    11341 tttgttaaag tttattttta aattggaaat tttaaaattg aggaataaat cctcaaaatt
    11401 atttagaatt ttgttttttt agagttctta gagtagaagc tgcaattctc atttttctcg
    11461 tggtgccatc ttctaaagtt acacgaactg ttctgagatt aggtaaaaag cgtctttttg
    11521 ttttattgtt agcatggctg acattattac ccaccattgg acccttgcct gtgatttgac
    11581 atactcttgc catttttttg tccttatgaa aatttttaaa tggagatttt atcaaaatta
    11641 agcttaaaat attccataat ttatagtttt tttaatatat aagtcgataa aatattattt
    11701 atcacattta tatatagttt aaggttttga tcatgtatgt agctccaagt ttattgtctg
    11761 caaatttttt gaaattagaa gaagaagtta aagctattga agctgcaggt gcggatcttt
    11821 tacacattga tgtaatggat ggacactttg ttccaaattt gactttcgga ccttgcgtga
    11881 tcgaaaaaat ttcaactatt agtaagttgc cattagatgt gcatttaatg gttaaagatg
    11941 taagtaaatt tgtagatctt tttatctctt taaaaccgaa atttatctct tttcatatgg
    12001 aaagcgaagt tcatcctata aggctttgtg aatatataag aagtcaagga atccatcctg
    12061 ctattgtttt aaatccacat actcctattg attctattaa acacatgcta gaatttgtag
    12121 atatggtgct tttaatgagt gttaatcctg gatttggtgg gcaaaaattt ttacctttga
    12181 tacatgaaaa aatcaaagaa ttgcgccaaa tgattgataa aaaaaatgct aaagttttta
    12241 tagaggttga tggtggtgtt aatggtttaa atgctagtga tttagaagaa tctggagctg
    12301 atattttggt ggctggaagt tatatttttt cttccaatga ttataaaact gcaatttcat
    12361 ctttaaagct tgaattttga gtttacagca aattgatcag attatttcta tattaaataa
    12421 gcaaagcaag ccttatgatt gggtgatgca agagtttgcc aaagttgaag aattaaaaaa
    12481 ttttgattta gatttagaaa cttttgagct tttggggtta ggtttaactt taaataaaga
    12541 taatattttt actcttaaaa cacgcacaac aaaaattaaa gatgaaattt tttgcatagt
    12601 ggatatagaa agtactggtg gggtgagcaa gggggaaatt ttagaaattg gagcggtaaa
    12661 aattcaaaat tctaaagaaa ttggacgctt tcaaagtttt gttaaagtaa aagaaattcc
    12721 aaaaaatata actgaactta cgggtattac ttatgagatg gtggaaaatg cttcaagttt
    12781 agcaaaggtt ttaagtgatt ttaggctttt tttaaaagac agtatttttg tagcgcataa
    12841 tgtgcgtttt gattatagtt ttatttctaa ggctttaaat gagtgtggtt ttggcatttt
    12901 acttaatcgt cgtatttgta ctatagaatt tgcacaatgt tgtatagaaa gtccaaaata
    12961 taaactagag gttttgaaag aatttctggg cgtggaaaat acgcatcata gggctttaga
    13021 tgatgctttg gcagctgctg aaatttttaa atattgcctt ggaaaacttc cctatcatat
    13081 aaaaactaca gaagaactta taaattttac aaagactgcc acgcataaag caaaaataaa
    13141 tatttaaaga gtataattaa gacataaatg acgggagctt gtgtaacagg ctgagagtaa
    13201 gctaaaagct tagaccgaac cggatctgga taataccagc gtcgggaaga tttataaatt
    13261 tcaatacttt aaaaatttat actcaccctt catttatcca aattttttaa aggataaatt
    13321 tatgaaaact caaatgaatt atgcgaaaga aggtattttt actaaagaaa tgcagattgt
    13381 tgcacaaaaa gaaaatttaa gtaaagattt tttgcttgaa aatattgctt gcggtaaaat
    13441 tattatccct gcaaatatta atcataaaag tcttgatcca aatggtatag gttttggact
    13501 gcgtactaag gttaatgtaa atttaggagt ttcaaatgat tgcgttgatt atagcgagga
    13561 aatgaaaaaa gtagagcttg ctcataaatt tgacatagaa gcgattatgg acttaagcaa
    13621 ttatggcaaa acaagtcgtt ttagagacga gcttgttaat gtttcaaaag ctatgatagg
    13681 aacagttcct gtatatgatg cggtaggatt tttagaaaaa gatttaaaac aaattggtgc
    13741 taaagacttt ttagatgttg tatatcatca tgctaaaagt ggggttgatt ttatgacaat
    13801 tcatgcaggt attaattctc gcgcagcgca tatttttaaa caaagtaaaa gacttacaaa
    13861 tatagtttca agaggaggct ctgtgcttta tgcttggatg atgatgaaag atgctgagaa
    13921 tccttttttt gagtattatg atgatttgct tgacatttgt ttaaaatacg atgtaacttt
    13981 atctttgggc gatgctttgc gtcctggctc tactcacgat gcaagtgatg gggcgcaaat
    14041 ttcagagctt atagaattgt cactccttac tcaaagagct tgggatgttg ggattcaagt
    14101 aatgatagaa ggtccagggc atatggctat taatgaaata gaggcaaata tgcaattaga
    14161 aaagcgttta tgcaaaggag cgccttttta tgtcttagga cctttggtaa cagatattgg
    14221 cgcagggtat gatcatatta gtggtgctat tggaggagct gtggctgcag ctagcggtgc
    14281 tgatatgctg tgttatgtaa cacctgctga acacttaaga cttccaaatt tagaagatgt
    14341 tagagagggt atagttgcga ctaaaattgc agctcatgcg ggagatatag ctaaacttcc
    14401 aaaagaaaga gcaagagatg atgagatgag taaggctaga caagagatag attgggagaa
    14461 aatgtttaaa cttgctattg atggagaaaa ggctaaaaaa atgtttaatg agcgtcgccc
    14521 tgatgattta aactcatgtt ccatgtgtgg aaaaatgtgt gcaatgaata ctatgaatca
    14581 aattttaaaa ggcgaagatg tgagtttagc ttgaataaac tttgagagta agatctatag
    14641 agataccttg ctctcctgct ttaagattaa gtggataatc aagcttgatt aagttattat
    14701 agttttttag agcatcaata aaatcataaa gccttctagg attgttcatt gtcgctttaa
    14761 tggctaagcg gttttttaga tatttttctt gtttttcggg cttagtttct tgaattttta
    14821 cattttgaaa atatttttgt aaaaaaatat caaaatttcc tatattaaaa ttttgctcaa
    14881 attgctctaa acttttgttg ttttcgcttc ttagagttga tattttatct tcactaaagt
    14941 caaattttaa tttagcggct tttaagatag caagttgtga gttttctcta agatttgctt
    15001 gtttataatt ttttaatgtc ggtaaaagta aaaataagat caaggctgtg caaacgctta
    15061 taaaacttaa cgcgcaaatg ataagcttta ataaatcaat ttcttctaga cttttatctt
    15121 tcatctgcaa ctcctggaat ttgtttacta atactaacaa aacgatacca cccattatct
    15181 aagcgataat aggttgtata gctttgatca aagatgcttt ttaaaggggt ttctaaaagt
    15241 agagtaaaca tttctcttgt aggagtgact ccgataagtt ttaaggaata ttcgtcttgt
    15301 tcaacacttt caagagtaat attatcagtt tttacaataa tatcaaatag atttcttaag
    15361 ctttctttaa caatttgatt ttgagtgtta aaatgtttcg ctatttggct ttgatcaaat
    15421 aaaatttcat aaagcatttc attttgctta gtttgatttt gaagcactat aacttgttgt
    15481 ttttcattat cgatagagct attgattaat gcaattttta ttgtatatgt aaaatatact
    15541 agcaagataa ataatatact aaaaccaaaa agtcctagcc aaattttatc aaagagtgtg
    15601 aaaataggtt tttttcttgg ctgtatgaag ctataagtca tttaagctcc ttttgcatca
    15661 attctatcat aagatctaag gtgttgattt gtttcgtttt tatctctaaa aaagtttcac
    15721 tttctaaaaa atcaatagca cttatgttaa tatctgattc actatataat aaaataccat
    15781 tgataaatac cccagcatat ttatcatcat tataaaattt ttcaatgctc gtaataatat
    15841 aacggcaaag ttccatatca ttgctaaatt gatttaattc atcaagatta aaattatcat
    15901 tattatccaa agtttcaaga ttattttctt gatcaagtag atcaaattta ttatttaagg
    15961 cttcattgaa gttatctaag gtaacttcag tatcatcgtt gttgttttca atttcttgat
    16021 tatcttctga tggaagttca agctctaaac ctaattcttg ctcaaatatt ttaaaatcac
    16081 cgtataaaat agtattgcct ttagcaacaa taattgccaa aagatgtcct tgcttaaatc
    16141 cataaagtaa aatttgatca tcaggctgtt tttctttttg tatattgtag taaagaagag
    16201 caaaagggga atataaaaaa tctaaacctc tatattcttc aaaaagctcg ctataatatt
    16261 ccacatgttc ggtagccgta taaacaaggg cattattaaa caaaatatgc tgtaagctga
    16321 tttttcctat attaaagtgc tcacaatctt gaatatttgt actaggtatt aatccttgtt
    16381 ctttggcatc taaaaataaa gcagtgtggt aaaataagaa atgcttgctt aaatttttta
    16441 tgtattctag taaattttcg cttttatcaa aagttttttc attgctactg attagtttat
    16501 ttcctctata aatagaagct tttacaatat tttttttatc ttctaaaata atactaataa
    16561 aaagttgtgg aaatattttt ttaagtaaaa ataacatttc attccttaaa ttgatcagct
    16621 aagctaattt tatcaaattg tttcattaga aattctttag ctttttcttt atctaaagat
    16681 aaaatatcca aaggttcact tagactataa gtaatcttac taaaaggttt tggcaagatc
    16741 atcttatccc aacttttaaa tttccaaaaa cgatttgctt catagtttaa aattcttatc
    16801 tttagttctt ttttttgagc caaaatgata gaaccatctg aaatactatg ataaggccct
    16861 cgtggaccat cgggcgtgat aactatatcg tcattttgtt ctaaaacttt aaatgcagct
    16921 ctaagtgcac tgctagcacc ccttgaagtg cttcctctta cagtatcaag accgaaaagc
    16981 ttgatgattt ttgcaatttg ttctccatct ttatggtggg agatcatgac ataggctttt
    17041 ttattttttt gtctataatg tctaaacgca aaaggcatga gtgctaattt tccatgccaa
    17101 aaaagtatca caccagcttt acggtcaact ttttcacctt tatagtgctt tttacagctt
    17161 aaaaaaataa gccattgcaa gatgaaaatt atatatgtta agcaatggat tttaaacgat
    17221 ttccccatat aaaaccatac gctttgcatt agttattttt acttctttaa attgccctaa
    17281 aagttcttcg ctaccttcaa cttgaactaa aaagttatta tctgttcttc cagcaatgct
    17341 attgcctgct cttaattctt caaataaaac tttaaaagtt ttattttctt gtttttttac
    17401 aattttatct aaaatttcac tatgacgatt ttgtaaggtg ctaagtcttc ttgaagctat
    17461 ttcttcatcg atttgattag gcatggttgc ggcttttgtt aaagggcgtt tggagtattt
    17521 aaaagaaaaa atttgttcaa aacgcacttt ttccaaaaca tctacagtct cttcaaaatc
    17581 tttttcactt tcccctggaa aagctacaat aatgtctgta gaaatgctaa catttggaca
    17641 aagttctcta agttttaaag ctctatttaa ataccattct ttagtatagc cacgcttcat
    17701 agcttttaaa atttcacttg agccgctttg taaaggcata tgcatggatt tgcaaacttt
    17761 tggattattg gcaaaaactt ctaaaaattt atcatccatg tgcaaaggat gtggacttgt
    17821 aaagcgaatg cgttccaaac cttctatagt gctaagttct tctaaaagat ctgaaaagtc
    17881 cattttttta tgttcgtttc taaatctttt gccatagtta ttgacatttt gtcctagcaa
    17941 gaaaatctct ttagcgcctt tttcaatagc tttttgagct tctttgtaga tgatgttaaa
    18001 aggtatggaa atttcatctc ctctagtatg tggcactata caataagtgc agtgtttatc
    18061 acaacctatg gagatattaa tataggattt ataaatacta tttctaaaat ctgcaaaagc
    18121 aaattcactt tcatcatagt ctatatccac gcccataaat tttggagttt ttatagcttg
    18181 agtgattttg gaaatatttc ttgcccctag aacaaaatcc acataaggag cacgtttgaa
    18241 aatttcattt cccaaatgtg atgcagtgca tccacaaact cctattttag caccttcttt
    18301 tttaactttt tcaaagccac ccacttctga gaaaagttta tgcacaggtt tttcacgcac
    18361 tgaacaggta ttaataagaa taagatctgc ttctttgata tcttctgtta gtgcgtaatt
    18421 ttctttttgt gttaattctg cgatcatatg ctcagaatct ctgacattca tcgcacaacc
    18481 taaagtttgg ataaaaagtt ttttagcact caaagaatat gtacctcata cataaaatca
    18541 ttatcatcaa gtccgtattt tacggttcta tgataaatgc ttactccttt tttttcaaaa
    18601 tgatttacaa gggcaatgag ttgtttgtgt gtattatctt tatcaaaata aaaaaacttt
    18661 tgtccttctt tttctatagc ctcttcgatt ttttctaggc taatattttt aggtttttca
    18721 ttaatcaaag ttcttgccaa ttttaattcc atagctaaat ccttaagaat tttcatttta
    18781 atctataatt ttagcaaatt ttacttttaa ttaaacttat taaggatata atttttatct
    18841 acattattta aatttcccac aaaaaaggtt ttataaaata tggaaaagat agcagatatt
    18901 atcgaatcta ttgctaatga aaaaaattta aacttagaga atgtaagaga aaaggtagct
    18961 accgctttaa tcaatactgc aaaaagaatt tatggacaag aatatgagtt ttttgtggat
    19021 cctaaaaatt taaatcttta tcaaaaaatt accatagtag cagataatga cgagagattg
    19081 caaaataaaa gtgagagttt tatcgcgtta agtaaggcaa aatcagaagc tccagatgtt
    19141 gaaataggag atgaattaac ctatgaatgt tctttggaaa atttaggaag aactgcggta
    19201 aataccttgc ataaagaact tgaatatcat atacaaaaat tattagaaca aactattttt
    19261 gaaaagtata aaaacaaagt agggcaaatg gtttttggta cagttgttag agtggataat
    19321 gaagaaaata cttttattga aatagatgaa ttaagagctt ttttaccgag aaaaaatcgc
    19381 attaaagggg aaaagtttaa aataggtgat gtggtaaaag ctgtgatacg ccgtgtttat
    19441 acagataagg gtattaaaat cgagcttagt cgtacaagtc ctaaattttt agaatgttta
    19501 cttgaagctg aggttccaga aatcaaagat ggttatgtca atattatagg atgtgctaga
    19561 attccaggtg aaagagcaaa aatcattctt caggccaatg gaacaaatat cgatcctgta
    19621 ggagctacag taggtgttaa aggtgtaaga attaatgcgg taagcaaaga gcttcataat
    19681 gaaaatattg attgtataga atttacaaat gagagtgaaa ttttaatttc tcgtgccttg
    19741 gctcctgcta ttgtaaattc tgtaaaaatt gaagataaaa aagctattgt aagtttaaat
    19801 agcgaacaaa aaagcaaagc tataggaaaa aatggtatta atattcgcct tgcttctatg
    19861 ttaagtggtt atgaaataga gctcaatgaa ttaagctcat cgcagctaaa taatgccatc
    19921 agcaatgaag aagcaatgaa aaatcttcaa gatttgttta aaatttaaaa tatttgtgaa
    19981 ttttcacaaa tattttttat aaaaccactt ccaataaaat gccgcaaaga taaaaatcat
    20041 acccaataag cctgtaatta gttctaaact caagcctatt tcaaataaaa agcccataag
    20101 cattgaaata atagcgctaa aactaagata aatcatatct gtataagcga tcactctacc
    20161 atgatattct ttgtcggcat ttttttgtat catagtgtag gtgtaagccc aaagcgctga
    20221 ggtaaaaaaa cctgcaccga ttaaacctaa aaaagaaata taaaaattaa attgagttaa
    20281 agcccaaagt ataataccca agccttgacc aagatacatg taaaataaat ttttatcatt
    20341 aataaatttg cttaaaacca taggtcctat agctaaagaa caagcacgta ctgcatttaa
    20401 aaaccctatt actaaagcag cagataaaac ttctttatat tgatgttgcg ctaaaagcgt
    20461 aaccaaggtt tcataagcag ttaaacctat aaaagcgtga agcaagataa gatgaaaaat
    20521 tatcttattg tttaaaacat agaaaaatcc ttcttttatc atggtaaaaa agcgactttg
    20581 tgttttttga tgaaaatcag gaatgcttaa tcttactaaa aaagaaatgc ctatgagtat
    20641 aagtatacag tcaaatagaa aagcggtttt aactcctaga aaataaataa aaattcccgc
    20701 acttgccata cctgctgtat aagaaatcgc ccaaatgaca ctgtgcattt cattagcgag
    20761 tttaagttct tgaggagtta aaattttggc caataaactc atttcagctt gaaaataaat
    20821 cgaagcaaca caaagtctta tgaaaattaa aataaataaa agccaaagca tactaagact
    20881 tgtgacaaaa ataagacaaa aaatagaaat taattctatg ctaatcatac tgagtaaaag
    20941 ttttttaggt ttatttttct ctactatgac gccattaata ggagcaagta aaactccagg
    21001 taaaaaagca agcatagcac ttgtagctgt tgcccaagta ggagcattaa gttcgactaa
    21061 aagggtaaaa actcccgttt gagaaaacca tgctccaaaa tatactataa actgaaccga
    21121 agctaatatt ctgatatttt tattattttt taatagttca atgtaattca taagcgaaac
    21181 tatagcataa tttatatttt aaatgctata attattttaa ttatgtaaaa aacaaggaaa
    21241 aattttgaaa agactggata aaaaagaagc tttagattta ttacaccatg caagtttaac
    21301 agaacttgga gaaatggctt ataaaagaaa attagaactt catcctgaaa aaatcaccac
    21361 ttttgttgtg gatagaaata ttaattatac caatgtttgt tgtattgatt gttctttttg
    21421 cgctttttat cgccatcata aagaagatga tgcttatatt ttaagctttg aagagatagg
    21481 caaaaagata gaagagcttg aagctatcgg gggaacacaa attctttttc aaggcggggt
    21541 gcatccaaaa ttaaaaatag aatggtatga agaattagtt tcttggataa aagaacatta
    21601 tccaaatatc actgtgcatg gtttttcagc agttgagatc gcttatattg caaaagcatc
    21661 taaaatttca atcactgaag tgttaaaaag attgcaagct aaaggtttat tttctatacc
    21721 aggagcaggt gctgaggtgc taagcgatag ggtgcgtgat attatcgcac caaataaatg
    21781 tgatacagct acttggttag aagtacatcg ccaagctcat aaaattggta tgaaaagtac
    21841 agctactatg atgtttggaa cggttgaaaa tgatgaagaa atcatcgatc attttgagca
    21901 tttgagaaaa ttacaagatg aaacaggggg atttagagct tttattttat ggagctttca
    21961 aagtgataat actgctttaa tccaaaaaca tccagagatt atgaaacaaa gttctaacaa
    22021 atatttaaga cttttagctt tagtaagact ttatttagat aattttaaaa atttacaaag
    22081 ttcttgggta actcaaggct cacttatagg ccagcttgct ttaaaatttg gggccaatga
    22141 tttaggctca actatgatgg aagaaaatgt agtaagtgct gcaggagcaa gttatagaat
    22201 gaatcaagat gagatgataa ggctgattag aagtttaggc gaaaatccag ctaaacgcaa
    22261 taccgcttat gaaattttag aaaggtttta atgcagtatt tagagagtag gggtattaaa
    22321 atccctttta tttttgaaaa aaattctgat tttcctattg ttgttttaaa gcttgttttt
    22381 agaaattgtg ctagaagtta tgatgaaata gcaggcttag ctaagatgtt ttcacgtatt
    22441 ttaaatgaag gcgtggatga taaatttttt aaggatttag aatttagagc gataaattta
    22501 gaggcaagta gtggttttga aagtttggaa atcaatcttt cttgcttgaa agaaaatttt
    22561 gattttgctt taaagagttt agaaaaattg cttttaaaac caagaataga agaaaaaact
    22621 ttgcaaaaat taaaaatcaa tgccttaggt gagctcgcga gtaaaaatag tgattttgat
    22681 tatttagcaa aaaatttact caatgctcaa atttttaaat gtaaagaatt tcaaagtcca
    22741 aatgatggag atgaaaaaag tatagaaact ttgtctttaa aagatttgca aaatttttat
    22801 aaaaatttta tccatcttag tgatttggtt gtgattttag gaggagattt agaagaaaaa
    22861 caagccaagg aagatctttt aaaactctta tcaaaacttc aaataggcaa aaaaaatact
    22921 ccaaaaaaat atgagttagg caaaaacatc aaagatgaaa ttttggtacg cccagaaagt
    22981 gaacaagctt atatttattt tgctacgcct ttttttgctg attttaaaga taaggattta
    23041 tatcttgcaa aaattgcctt atttgtgcta gggcaaggag gatttggttc aaggattatg
    23101 gaagaaattc gtgttaaaag aggtcttgca tactcagctt atgctatgct tgatatgaat
    23161 atgtcttttt ctagagtttt tggatattta caaactaaaa atgaaagcgc taaagaagct
    23221 aaaaaaatcg taaaagagct ttttgaagat tttataaaaa atggcatgac tcaaaatgaa
    23281 cttgatcaag ctaaaaattt tctcatagga tcaactcctt tgcgttatga aagcttaagc
    23341 aagcgtttat ctatgtcttt taacgaattt tatcaaggtt taaatttggg atattataaa
    23401 gaagagttaa aacttatgga aaaggttaaa cttgaaacca taaatgctta tattaaaaaa
    23461 catcaagagc ttttaaatat aagttttgca agcatacaaa atgaaaatta aagaaagtga
    23521 ttttgaattt tttaaaaaat taaaaattag aagtgctatt gatttagcgc ttcttttacc
    23581 taaaaaaatt gaaaatttaa atccaagtaa aaatcctaaa gaaaatgaaa tttgtaccca
    23641 aaaaatcact ataaaaagcg ttagttcaag aaaaaatcaa ctttttggtt taggtttttg
    23701 tgaggaatgg caagaaaata tttcttttgt gttttttcat cctagagctt ggcattttgg
    23761 tatttgtaag gtaggaaaag agcttatttt taatgctaaa ctctcgcatt ttaatcacac
    23821 ttggcaattt aacaatccta aaattttaac ttcttttgag ggttttagtc caaagtatca
    23881 aattttaggt ttaaaagata caaaaattgc tgcttttata cataaatatc ttaattatga
    23941 aaatttaaaa gaaagtggca tagaggataa atatatacat tttcttttaa atttgcatgc
    24001 ttatgatgaa aaaagttttt ttatgtttga aaatttgcaa aattttagca aagatttaaa
    24061 atatatagaa atatataatt ttttaaagcg tttaaaagct aaaaaaacgc attttaaagc
    24121 tcatcaaatc aatgttttta atatagccaa ttggcttaaa gatttgcctt tttctcttac
    24181 taaagatcag cttaatgcct taaaagacat agaaaaagat ttacactcaa aagaagccaa
    24241 aaggcgtgtg attatgggtg atgtggggtg tggtaaaacc ttggttttac ttggtgcggc
    24301 tttgatggtt tatcctaagc aagctatttt aatggcacct actagtattt tagcgtatca
    24361 gctttatgaa gaggctaaga aatttttacc tgattttatg aatattttgt ttattaaagg
    24421 gggtaaaaaa gaaaaagatt tagaacaaaa tatccaaaaa gcaaatcttg ttataggcac
    24481 tcatgctcta attcatttag aaagccataa tgccgtactt gtaatgatag acgaacaaca
    24541 tcgttttgga tcagctcagc gtgagaaaat tcattcttta aataaacaag aatttgcccc
    24601 tcattttata cagttttcag ctacgcctat tccaagaact ttaagcatga tacaatctga
    24661 acttttaaat tttagcttta ttaaacaaat gccttttaaa aaagatatta caacttattg
    24721 catacaaaat gaaggttttt ctaagcttag cgagaagatc aaagaagaaa tcgctaaaaa
    24781 tcatcaaatt atcattattt atcccttatt gagtgctagt gataagattc cttatctttc
    24841 tttagagcag gccaaagaat attggcagag tcattatgaa aaagtttttg taactcatgg
    24901 aaaagataaa caaaaagatg aaattttaga gcgttttaga gacgagggaa atattttact
    24961 aagcactaca gtggtggaag taggtatttc tttgccaaga ttgagtatga tagtgattgt
    25021 aggagcggaa cgtttaggac ttgctacttt acatcaactt cgtggccgtg taggtcgtgt
    25081 agggcttaaa agtgcttgct atctttatac taagcttaaa gaaattccga gtcgtttaaa
    25141 agaatttgct agcactttag atgggtttaa aatagcagag cttgatctta aaaatcgttt
    25201 gagtggagat ttgctcgatg gttttatgca acatggaaat gagtttaaat tttttgattt
    25261 ttccaaggat gaggagattt tagaaaaggt aaaaaaagat ttggcaaaaa aattgccaaa
    25321 ttaatgtccg ccgtacttgt aaagcatatt ttgaaaatgt gaagctatca tttgtgcacg
    25381 ctgtaaaatg acatttttca tttcttcatt ataaactata tttaaacttt cttcaaaaag
    25441 ttttagccaa atttcaaaaa actcttgagg aaaaggaggt agatctaagt gcttttttaa
    25501 gggttgccca ttataatcac cttcgcctaa aagcatgcct gcccaaaaat ttcctatttt
    25561 tgctttatgt tctttccatt cttcatcgct tgttccaata gcattgttaa aaataggacc
    25621 taaatcctta tcttttctaa ctttttcata aaatatttcc atgagttttg ctatgctttc
    25681 ttgattaatt gtttcaaatt tcatataagc ctttcttaaa tgttaatttt atggcgttaa
    25741 tatagcaaaa ataagataaa ttaaatttaa cataagttaa gaatggaaat attatataat
    25801 gaaagattat ttagaacttt tatct
//
LOCUS       DAPIWJ010000013        24904 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.013, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000013 DAPIWJ010000000
VERSION     DAPIWJ010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24904)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24904)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24904
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.013"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            43..642
                     /locus_tag="RJ259_000403"
     CDS             43..642
                     /locus_tag="RJ259_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HDV7366144.1"
                     /translation="MLPKWDNSYSVHNAKIDEQHKKLFKLAAKVEVVSDRSVSKNEVK
                     ELLAEFFNYMKDHFNDEEKYMQLIGYPNLEEHRKIHKEIIQTMINLIKDIKSTNDLKE
                     KLYIVAKKWLLEHILYEDMKVEKWRSSSLSTDDGGDVSFEAAEDEDNEHPQFYLYTCN
                     CPGKIHDVPYSIHQKIELQGRKFTCKTCKQAIKFYKKYS"
     gene            653..901
                     /locus_tag="RJ259_000404"
     CDS             653..901
                     /locus_tag="RJ259_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HDV7366145.1"
                     /translation="MKRNVKTYSFRMPLELKERLDNLSKNLSKPKSTIVKEAIEAYLN
                     EVEDFSFAVNALEELKDGDYQKASKKIDKIVKNLKQTK"
     gene            complement(992..1066)
                     /locus_tag="RJ259_000405"
     tRNA            complement(992..1066)
                     /locus_tag="RJ259_000405"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1032..1034),aa:Asn,seq:gtt)
     gene            complement(1159..2406)
                     /locus_tag="RJ259_000406"
     CDS             complement(1159..2406)
                     /locus_tag="RJ259_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HDV7366146.1"
                     /translation="MNKSSIFYTITFIFIFAGVSVILGFLWLIEYDQQNYTRELNTKY
                     SLIANARLLNFAGVISEKEFEEQTKNYNKMDEITEAKQIRKILFRGDVLARVEVNNGL
                     IEIISYNRQVYLNIIYDGKVYLYKDQDYQTYRYFIIKAIAVAVICILVLLYIYIFKKL
                     KPLKRLKKQIDKFAQGKLGDIEDVSTGVDEISQVSEAFYQAIVQIRKLNQSRQFFLRN
                     IMHELKTPITKGLLTLEMIEDNKYKERLNGVFTRLEILINEFAAIEQITSGAAFINRK
                     KYNILDVLDEAKEIAMRDDSNIRIFMEESFFVNVDFKLFTTAIKNMIDNGIKHSEDGF
                     VQIDIIDDYICFKNRGPELNNTLEYYTQAFTQGSKQKSSFGLGLYIVNTILETHGMKL
                     DYLYEDGVNLFYFRNLKSVIVKE"
     gene            complement(2403..3077)
                     /locus_tag="RJ259_000407"
     CDS             complement(2403..3077)
                     /locus_tag="RJ259_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDV7366147.1"
                     /translation="MTNILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALK
                     EYQLIILDLSLPGLDGLEVCEEIRKKYDTPIIVSSARHDITDKVNALELGADDYLPKP
                     YNPKELQARIKSHLRRISNTKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILS
                     YLIKKEGGVVSREELVYNCSSISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGI
                     GYKLTQ"
     gene            complement(3153..4571)
                     /gene="htrA"
                     /locus_tag="RJ259_000408"
     CDS             complement(3153..4571)
                     /gene="htrA"
                     /locus_tag="RJ259_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease HtrA"
                     /protein_id="HDV7366148.1"
                     /translation="MKKIFLSLSLASALFAASINFNESTATANRVNPAAGNAVLSYHD
                     SIKDAKKSVVNISTSKTITRANRPSPLDDFFNDPYFKQFFDFDFSQRKGKNDKEVVSS
                     LGSGVIISKDGYIVTNNHVVDDADTITVNLPGSDIEYKAKLIGKDPKTDLAVIKIEAN
                     NLSAITFTNSDDLMEGDVVFALGNPFGVGFSVTSGIISALNKDNIGLNQYENFIQTDA
                     SINPGNSGGALVDSRGYLVGINSAILSRGGGNNGIGFAIPSNMVKDIAKKLIEKGKID
                     RGFLGVTILALQGDTKKAYKNQEGALITDVQKGSSADEAGLKRGDLVTKVNDKVIKSP
                     IDLKNYIGTLEIGQKISLSYERDGENKQASFILKGEKENPKGVQSDLIDGLSLRNLDP
                     RLKDRLQIPKDVNGVLVDSVKEKSKGKNSGFQEGDIIIGVGQSEIKNLKDLEQALKQV
                     NKKEFTKVWVYRNGFATLLVLK"
     gene            4771..5664
                     /locus_tag="RJ259_000409"
     CDS             4771..5664
                     /locus_tag="RJ259_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family protein"
                     /protein_id="HDV7366149.1"
                     /translation="MNSLYETLGVSKNASADEIKKAYRRLARKYHPDINKEKGAEEKF
                     KEINAAYEILSDEKKRAQYDQYGDSMFGGQSFHDFSRNTGGVNLDDILKDLFGGGFGG
                     RSRGGFNGFSSKGFSSGFGGFGGFEEEILDSNLELHIPFEKAVKGGEHSFNFQGETIK
                     FKIPHGIKEGEKLRIRSKGKQSRNGARGDLIIIVKIEESPIYTREDDDLYQKVDISLK
                     TALFGGKINIKTLKEGKEEAIINITPNSKNNQKIRLKGYGVQNRKSDIYGDMYLILNV
                     VLPNLDTLDEKFIELLKEKLP"
     gene            5680..6054
                     /gene="hspR"
                     /locus_tag="RJ259_000410"
     CDS             5680..6054
                     /gene="hspR"
                     /locus_tag="RJ259_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock transcriptional regulator HspR"
                     /protein_id="HDV7366150.1"
                     /translation="MEQHYDEPVYLISVVAKVLSIHPQTLRQYEREGLIEPSRTDGKI
                     RLYSQRDIDRIKLILRLTRDMGINLAGVDVILKLKNQLHEFENLIDELRLELSKQQDK
                     EAASKAVVKHKNSFDLIFYEKK"
     gene            6060..7685
                     /locus_tag="RJ259_000411"
     CDS             6060..7685
                     /locus_tag="RJ259_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HDV7366151.1"
                     /translation="MDNFLEIFLITVAIAIVLNVIFKKFEIPTIIGYIAAGEIISEIY
                     HLSGKGEITHIAEFGIVFLMFTIGLEFSFKHLMAMKQEVFLNGSLQMLTCGFVFMLLA
                     IGILGLGDKSATIVGFALALSSTAVVLKILNDNGDINEQYGRKALGILLFQDIAVIPL
                     LLLVDIFSSNNQNIEKLLFTSLISALILITLLFFIGKYLVDRIFRLIIHTSSQEIFIS
                     TVLFMVIGASFLANYFGFSYSLGAFIAGALIAETKYKHKIEADLIPFRDLLLGLFFIT
                     VGMQIQLDVVAQNWFLIIVLTLLVMALKFGIVFGFLFLYTKKRVALKTAFAIAQIGEF
                     ALAIFSLLQAKNMLDIKTSQILIVVSILTMIITPFILNNIRKITNVVEDIALNTNAVQ
                     NIDSNIKLKNHLVVFGYGRLGQEVVQKIKNTGVPYLVLESDLNLVELGVSRGENVVFA
                     NAAQEETLKIANIEECAVAIITVTNEAKLEILCQVLANYPKPIDTIIHVNGTLKKMLF
                     SSIDENIRIIRSEKVIARNLVQEALECRIHKNT"
     gene            7695..8027
                     /locus_tag="RJ259_000412"
     CDS             7695..8027
                     /locus_tag="RJ259_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366152.1"
                     /translation="MTKNEEKALRVKYLRNLEKFFNGAISALKKEDFDKTKFEERMLK
                     NAKFFEKNPAVNLNSTYAKNLEFFVNACLDFSKEKSELLNLANALDKQKKQGEKKEKH
                     KNYLKDYE"
     gene            8024..8644
                     /locus_tag="RJ259_000413"
     CDS             8024..8644
                     /locus_tag="RJ259_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDV7366153.1"
                     /translation="MINVFFDMDGTLIDSANAISCAVNEIRQDLNLAPLSREIIMQTI
                     NTPNIDWAKELYNIENFHHSSFKEGYEKYFVKHYEQSVVLFEGVKELLEFLKSKNCFL
                     AIATNAPQSSLSNILKKHDIIPYFDKILGVSLGIEPKPHPMMLELLKSEAPYKTSVFI
                     GDSQKDKECAKNANLPYFHAKWYQKNLKENEFSNASELKGFLQKYL"
     gene            8700..10694
                     /locus_tag="RJ259_000414"
     CDS             8700..10694
                     /locus_tag="RJ259_000414"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HDV7366154.1"
                     /translation="MSELLIEIGTEELPAIPLLKELANIEKKWNNVLEEYRLVSDFKF
                     YYTPRRLVFFHENFADKQEDSFAEFIGAPKNVAYKDGVLTPAGQSFLQKARISENELS
                     FKEIKGKEVLYHQKAIKGLQSQEILGEMVEKFLKSLSFGKSMRWGANSFEFIRAIRSI
                     ACILNDELVNFQSYGVKSTKKTFIHRSVSYDLQDFNNAKEYFELLEKNYIILDPIKRK
                     EKILEQFKLIESQKNIQIGEDEELLAEVVAITEYPNALLGSFEEEFLEIPSEVIITSM
                     RENQRYFAVFNDKGLSNHFIVVSNAVCKDYSKIIHGNERVLRARLSDAMFFYQNDLQN
                     GLKPEKLAKMTYLEGLGTMQDKSLREIKIAEILCQMLHNDKIENISTALKYAKADLAT
                     QMVYEFTDLQGIMGSYYAQKMGLDYQICLAIKEQYLPNSEQAPLPSTEFSSIVALANK
                     LDTLIGLFSIGKIPSGTKDPYALRRAANGIIKIALNLNKEFDIQILLEKLSNHYKSFD
                     MQILKDFIFERLYTFYAVNASFVKAVLSSQNTDLIHINQSVNALIKLSKKDNFNENFA
                     TFKRLANIATKNPHKVDESLFVQEAESKLYKAFQEKTKANSLQEKLENLFALKPFIDE
                     FFNQVMINAEDEKLKNNRQALVYEIYAEFLKIADLKELSL"
     gene            10691..11512
                     /locus_tag="RJ259_000415"
     CDS             10691..11512
                     /locus_tag="RJ259_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HDV7366155.1"
                     /translation="MKALWILLSLTLWLFGAQNLELIKGQALFLELDKKDFLSLKNND
                     KNIPTFAHPKNQEKILAIFSLPYKNPPQNTKLIAFYKDKKEEIFIKTLEGNYKSEKLQ
                     IENKKIFPPKTIQERITKELKEANAIYSSYTPKALFNGAFNIPLNSFITSDFGKARTF
                     NEKVASYHSGTDFRATTGTPIYAANSGVVKIAKDRYFAGNSVVIDHGFGIYSQYYHLS
                     KIDVKIGQKIKKGELIGLSGATGRVSGPHLHFGILAGGKQVDPLDFVSKFNAIFQ"
     gene            11509..12459
                     /locus_tag="RJ259_000416"
     CDS             11509..12459
                     /locus_tag="RJ259_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HDV7366156.1"
                     /translation="MKFSDFFHAWLHESYYKNAVSIGKNGDFFTAVSVGNLFGTLLAK
                     HFLNLIDEKILKPPLELVEIGANEGYLSRDFLAALLELRPEIFSQISFFIIEPHEKLR
                     TLQKKTLEGVEFTHKNSLKECHFKNAFFFCNELFDSFTCELIDHDKMAFVENFKLIFK
                     NMDENLITKCKALNLTKGELSLELENFFKDLNQTCERFIFAGFDYGTLNPQSFSLRIY
                     QKHEVFSPFEVSLKDFFGKSDLTYNVNFTHLQKLIKEYDFKPLAFKKQSLAFMDFGFE
                     DLLEYTKNKNIKTYESFLSQAKILFFNFDEKFHFFEFQKN"
     gene            complement(12456..13430)
                     /locus_tag="RJ259_000417"
     CDS             complement(12456..13430)
                     /locus_tag="RJ259_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HDV7366157.1"
                     /translation="MLGIDLGSNTLRAVQMDEKLNKLKEYEFVIGAAKNLNQSGEISK
                     EAIQRLKNTLSILAKEQDLSKVRAVATAAFRKASNTNEIFAHLKKEFGIDFKLIDAKS
                     EAKISVLGMQSGLRRLKIWGEFAYCDLGGASCELSFGKSFKSFDFGIISFYEKNCHSY
                     YKTCISYKKLIKKYPKFIINIKDKKLKIHFLIANPYLKHLAFRAFDEVAMIKKELCSL
                     GAKTVVLNSGVPTTLSALKQNISYEKYEATKVNGKKLCHKDFLNYAIKLFHMEEKKAI
                     KEVGTMRKNYLSAGCLLFYALFDKHKLLVIDEGLREGVCLASMKNIKF"
     gene            13486..14259
                     /locus_tag="RJ259_000418"
     CDS             13486..14259
                     /locus_tag="RJ259_000418"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HDV7366158.1"
                     /translation="MLLGVNIDHIAVLRQARMVNDPDLLEAAFIVARHGDQITLHVRE
                     DRRHAQDFDLENIIKFCKSPVNLECALNDEILNLALKLKPHRVTLVPEKREELTTEGG
                     LCLNHAKLKQSIEKLQNANIEVSLFINPSLEDIEKSKILKAQFIELHTGHYANLHNAL
                     FSNISHTAFALKELDQDKKTLQAQFEKELQNLELCAKKGLELGLKVAAGHGLNYKNVK
                     PVVKIKEICELNIGQSIVARSVFTGLQNAILEMKELIKR"
     gene            14256..15350
                     /gene="pdxA"
                     /locus_tag="RJ259_000419"
     CDS             14256..15350
                     /gene="pdxA"
                     /locus_tag="RJ259_000419"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="HDV7366159.1"
                     /translation="MKKLAISIGDINSIGLEILVRSHEELSKICTPFYFIHESLLNKA
                     LKLLNLKLFNAKIVAFKDDKDYEFNFIKKENSLEIYSFCLPLGFKVDENFEIQAGEID
                     AKSGLYGFLSFKAASYFVYEKHAHALLTLPIHKKAWEDAGLKYKGHTDALRDFFKKNA
                     IMMLGCKELFVGLFSEHIPLAKVSKKITFKNLSIFLKDFYKETHFKKMGLLGFNPHAG
                     DYGVIGGEEEKIMEKAIAFVNAFLHSKKDEKFFKKALKDENLQKELLLNFKGKGVYLP
                     YPLVADTAFTKTGLKNCNRLVAMYHDLALAPLKALYFDKSINVSLNLPIIRVSVDHGT
                     AFDKAYKNAKINTKSYFEAAKFAINLHSKA"
     gene            complement(15340..15942)
                     /locus_tag="RJ259_000420"
     CDS             complement(15340..15942)
                     /locus_tag="RJ259_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366160.1"
                     /translation="MKKIILLLGLSLASLGALSFDELIYKDEVKPSFDCSKIKYDGKS
                     DDELMICNKIGVRNEFDNKKLALVDNIYSSLYQNISKKADKKMKKDFKAISKKMLKER
                     KICIKNMQNTKAGENPLLSLLNASDCMQEAYIKVLLELMQRAKKDTKTKEVLEQIFKN
                     KVDKYENLLTQSLNTNKDLQDFIDSLAKEDLIDSRAKFKL"
     gene            16055..17254
                     /locus_tag="RJ259_000421"
     CDS             16055..17254
                     /locus_tag="RJ259_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7366161.1"
                     /translation="MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAG
                     YLTTLYAIGVVIGAPLITIPLSRFHRHTQLLINLGIFALANFIIFFSQNFYLTAFARF
                     IAGTQHGVFFVIATLAVSAITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
                     FIFLLIFIITSLAFFGVWHMMPKNLHPSPTNLKNLIPAFSHQNLLKTYTITICSCGAQ
                     FVLYTYLQKILVEISGFKVQDTAYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILS
                     IQVLVFLSVFLTMHSKILIIFSVALIGFFAFSTIPALKMLSITKAKRHTYKVIDSTVS
                     VNEAAFNVGIALASFLGGIVLARLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQ
                     RKSFTKV"
     gene            17310..17630
                     /gene="ciaC"
                     /locus_tag="RJ259_000422"
     CDS             17310..17630
                     /gene="ciaC"
                     /locus_tag="RJ259_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion antigen CiaC"
                     /protein_id="HDV7366162.1"
                     /translation="MVVDNTQKTSNAIFSTTTKVKEKNTSADEFQATLNEVKNKEEKE
                     DKKTNSSKFTNEDIDLGAVREDFRSYAWQKMREDQYKKNEETLLNKLFTTIDAGNATN
                     NTKA"
     gene            17814..18836
                     /locus_tag="RJ259_000423"
     CDS             17814..18836
                     /locus_tag="RJ259_000423"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HDV7366163.1"
                     /translation="MIFIDACFKKPTPYTPIWMMRQAGRYLPEYMEVRKQAGDFLSLC
                     KDYKKASEVSLQPIDILDVDAAIIFSDILVVPLEMGMNLRFEKGEGPVFGNPISTLED
                     LEKLDDQNAHKKLNYVYDALKLTREKLSQNKALIGFCGSPWTIATYMIEGSGSKNYAK
                     CKKMLYQNPELLHKILNKLTQVLKLYLEEQIKAGANAIQIFDSWASALEYDKFFEFSF
                     NYMLEISNFIKSKYPNIPVILFPKGISGYLDRIDGNFDVFGVDWSTPLDLARDKLSHK
                     YTLQGNMEPCRLYDKNAIKEGVEKILKTMQNKAHIFNLGHGILPDIPVENAKYFIKLV
                     QESSAK"
     gene            18833..19735
                     /locus_tag="RJ259_000424"
     CDS             18833..19735
                     /locus_tag="RJ259_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HDV7366164.1"
                     /translation="MKILFGPVSSRRFGRSLGIDLSPSKKQCNFDCVYCELDPKKAQE
                     KQDEIISIDKIISEVKAMLEKNVEFDFLTLTANGEPSLYPYLNELILSLRSIAKDKKL
                     LILSNGTAVLDEDKFNALLKLDVVKFSLDSAVAKTFYRIDRALKNIDLEKMIEKMADF
                     RARFNGDLIMEILVVKDLNDNEEEFEALNQALKKIMPLRVDLSTIDRPPAYAVKKVSE
                     EKLLELSKLIDSTPVLLAKRHYEGEKLSFNEEELLKMLHLRSQSEIDIEVKFDEQSKT
                     LLNQLIKEKKVKILDLAGVKFYKV"
     gene            complement(19732..20928)
                     /locus_tag="RJ259_000425"
     CDS             complement(19732..20928)
                     /locus_tag="RJ259_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366165.1"
                     /translation="MILAGIIFIFNLILAYLSIDISKLDSVTEQLKIGMFSSIFVLSL
                     TLFIFAFRQNRNINKIYQKIFCMQNDFLNFQKKIDVDSALDLLKEKFETTSQNLTKIS
                     HEKDRYLHLLEENLYQLINISNAMRCLNEGYNKEINSLILNALNSQKDQIRLELNEAL
                     EHHKSIIGTSHGKVLQFEASVAIVNNDELENFLLANLLSYFGIESTCFKNLSFDVNDF
                     HLIFIKDKIFNKNVKKNYDFIVMGRHKNTHYEYFLTLPFEKKDLENILQNKLDKVCTL
                     KFKTPYQNNVLLFKQNDFDATLFFNIIEKQCDKNICINSFSQLKQELSKETYRLILLD
                     YELIKFDLEQMRNLLSAYKKQHPQSHIIFFSKEKVRDFDCVSEVLSDVSRNDLITLLR
                     KYLPKA"
     gene            complement(20930..22732)
                     /gene="uvrC"
                     /locus_tag="RJ259_000426"
     CDS             complement(20930..22732)
                     /gene="uvrC"
                     /locus_tag="RJ259_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HDV7366166.1"
                     /translation="MTKENLENELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVRS
                     YFAFTPNLHANPRNSLRIQKMIEETVHLEFIATNSEADALILENSFIKQLHPKYNILL
                     RDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
                     ASCKSPCIFYQISRCLAPCDKLISREKYLEILDEAIHALLNPSVLLKNLEKQMLVLAQ
                     NENYEEAAKVRDQIAMIKDLEVKVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKI
                     ISANSKITPIKNDIQWDQNEIYKQLILENFSMDIPLLANVIYVYEEFEDRVLLEEILS
                     QRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKSYFELENLPN
                     DIEIFDNSHLQGVANVGAMVTYRINSWDKSKYRKFHLKHKNDYDQMREVLTRRALDFD
                     KIPPPDLWLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHS
                     LKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANLGLSSGVMQK
                     LLAYYGNFESIYKADFKDLTMLVGRKAAQKIKEN"
     gene            complement(22725..23219)
                     /locus_tag="RJ259_000427"
     CDS             complement(22725..23219)
                     /locus_tag="RJ259_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366167.1"
                     /translation="MGKRNNIKMTKNASAVINELMDKPHYKPLKTLFFCKDFLSSFPL
                     AKQRLIAKIYVKNHILNIITLHPAAYQELNHDDSKIYIKFLIKAYGQKYPLSGFVDIK
                     DIKIFSQKYTYAANKNKNDEKLSKNSYLELSKGEFKNCFKDKKLFKKFEDLRELIKKG
                     SNLD"
     gene            23358..24893
                     /gene="guaA"
                     /locus_tag="RJ259_000428"
     CDS             23358..24893
                     /gene="guaA"
                     /locus_tag="RJ259_000428"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HDV7366168.1"
                     /translation="MKKADILVLDFGSQYTQLIARRLREQGVYAEILPFNVSLADIKA
                     KEPKGIILSGGPASVYATDAYFCDKGIFDLNLPVLGICYGMQLMAHHYKATVAPAGHK
                     EYGKANIEIKKDNALFKNLPKKQTVWMSHSDKVENLPQGFEVLATSENSPFCVFGNED
                     KKFFALQFHPEVQHSEFGKNILKNFAKYACNCESIWNMGSFAKTQAEKIREEVGNDKV
                     LCAVSGGVDSSVVAALLASAIKEQIIVVFVDNGLLRSGEKEQVEFMFKNTLGIDLISI
                     DASEIFLSRLVNVTDPEQKRKIIGNTFIEVFEEEAKKHKDVKYLAQGTLYTDIIESSV
                     VGASKTIKSHHNVGGLPEKMNLKLIEPLKEIFKDEVRALGLELGLSKEVVYRHPFPGP
                     GLAIRIMGEVNRASLELLRKADVILLEELKSTGWYDKTWQAFCVLLNVKSVGVMGDNR
                     TYDNAVCIRVVDASDGMTATFSHLPYEILENISRRIINEVEGINRVVYDISSKPPATI
                     EWE"
BASE COUNT         8981 a         3802 c         3618 g         8503 t
ORIGIN      
        1 ataatccttt catacaaata aatttttcct taaggagtta aaatgcttcc aaaatgggat
       61 aacagctata gtgtgcacaa tgctaaaatt gatgagcagc ataaaaagct ttttaaactt
      121 gctgcaaaag ttgaagttgt atcagataga tctgtaagta aaaatgaagt caaagaactt
      181 ttggctgaat tttttaatta tatgaaagat cactttaatg atgaagaaaa atacatgcag
      241 ctaataggct atccaaattt agaagaacat cgaaaaatac ataaagaaat catccaaacc
      301 atgattaatt taatcaaaga tatcaaatca accaatgatc ttaaagaaaa actttatata
      361 gtggctaaaa agtggctttt agaacacata ctatatgaag acatgaaagt tgaaaaatgg
      421 agaagttctt ctttgtctac agatgatggt ggcgatgtta gctttgaagc agcagaagat
      481 gaagataatg agcatccaca attttatctt tatacctgta attgtcctgg taaaattcac
      541 gatgttcctt atagcattca tcaaaaaata gaattacaag gtcgtaaatt tacttgtaaa
      601 acttgtaaac aagctataaa attttacaaa aaatattctt aaggaggata aaatgaaacg
      661 caatgtaaaa acttattctt ttagaatgcc tttagagctt aaggagcgtt tggataattt
      721 aagtaaaaat ctttctaaac caaaatcaac catagtaaaa gaagccatag aggcttatct
      781 taatgaagtt gaagattttt cttttgctgt taatgcccta gaagaactta aagatgggga
      841 ttatcaaaag gcaagtaaaa aaatagataa aattgtcaaa aatcttaaac aaacaaaata
      901 aaaaacttta tcacaatttt tttgtgataa agacttatta attttttata ttaaaataca
      961 tttatgaata ttaaaaatgg agttaaaaaa gtggctccgg atgtaggatt cgaacctacg
     1021 accaatcggt taacagccga ctactctacc gctgagctaa tccggaatat ttaaaagtaa
     1081 aatatgatta tagtgaaatt aaaaaacttt gtcaagggtt ttttcacaaa aatgcatttt
     1141 ttatgtaaaa aaattaattt actccttaac aataacactt tttaaatttc taaaataaaa
     1201 caaatttacc ccatcttcat ataaataatc aagcttcatt ccatgtgttt ctaaaatagt
     1261 atttacaata taaagcccta atccaaaact tgatttttgt tttgatcctt gagtaaaagc
     1321 ttgagtatag tattctaaag tattgttaag ctcaggacca cgatttttaa aacaaatata
     1381 atcatctata atatcaattt gcacaaaccc atcttcagaa tgtttaatac cattatctat
     1441 catattttta atcgccgtag taaaaagttt aaaatccaca tttacaaaaa aactttcttc
     1501 cataaaaata cgtatattgc tatcatctcg cattgcaatt tctttggctt catctaaaac
     1561 atctaaaata ttgtattttt ttctatttat aaaagcagcc cctgaagtaa tttgctcaat
     1621 agcagcaaat tcattaatta aaatttcaag tctagtaaaa accccattta agcgctcttt
     1681 atatttatta tcttctatca tttctaaagt taagagccct ttagtaatag gagttttgag
     1741 ttcatgcata atatttctta aaaaaaactg acgagattgg tttaactttc gaatttgaac
     1801 aatagcttga taaaaagctt cacttacttg tgaaatttca tccaccccag tgcttacatc
     1861 ttctatatca ccaagctttc cttgggcaaa tttatcaatt tgttttttaa gtcttttaag
     1921 tggttttaat tttttaaata tataaatata aagcaataca agaatacaaa tcacagctac
     1981 agctatagct ttgataataa aatacctata ggtttgataa tcttgatcct tataaagata
     2041 aacctttcca tcataaataa tatttaaata cacctgtcta ttataagaaa taatctcgat
     2101 taagccattg ttaacctcaa ccctagctaa aacatcacct ctaaaaagaa ttttacggat
     2161 ctgctttgct tctgttatct catccatttt attataattt tttgtctgct cttcaaattc
     2221 tttttcactg ataactcctg caaaatttaa gagccttgca ttagctatca aagaatattt
     2281 tgtgtttaat tctctagtat aattttgctg atcatattct ataagccaca aaaagccaag
     2341 tataacacta accccagcaa aaataaaaat aaaagttata gtataaaaaa tcgaagattt
     2401 attcattgag taagcttata acctattcca cgtatagagt gaatatattt tggagttttt
     2461 ggatcatctc ccatcttttg acgaattcta ctgataataa catctatact tttattacta
     2521 gaatcctcac taatagaaga acaattataa acaagctctt cacgacttac cactccaccc
     2581 tcttttttaa tcaaatagct taaaatatca aattcagcat tagttaaagt aagctcttgt
     2641 cctttcatgg taataatatg cttatattga tcataaacaa gatcttttac actttttgct
     2701 atggcgcttt ttgtatttga aatacgtctt aaatgacttt taatacgtgc ttgtaattct
     2761 tttggattat aaggttttgg taggtaatca tctgctccaa gctctaaagc attaacctta
     2821 tctgtaatat catgtcttgc gcttgaaaca ataataggcg tatcatactt tttacgaatc
     2881 tcttcacaca cttcaagccc atcaagccct ggcaaagaaa ggtctaaaat gataagctga
     2941 tattctttta atgcaagctt agaaagacct atataaggtt catgagctat atcaactttc
     3001 atatcaaatt tttccaaata ttcagctgta atttctgcta attctaaatc atcttctatc
     3061 ataagaatat ttgtcatagt tttcctttat tttaaactta attttaattt taaactaaaa
     3121 tttataacga aaggaaaatc cttccgttat ttttatttaa gcacaagcaa agtcgcaaaa
     3181 ccattgcgat atacccaaac tttggtaaat tcttttttat taacttgttt taaagcttgt
     3241 tctaaatctt ttaaattttt aatttcactt tgtccaacac ctatgataat atcaccctct
     3301 tggaaaccag aattttttcc tttgctcttt tctttaacac tatcaaccaa aacaccatta
     3361 acatcttttg gaatttgcaa acgatcctta agtcttggat ctaaatttct caaactcaaa
     3421 ccatcaatca aatcgctttg tacgccttta ggattttctt tttcgccttt aagaataaaa
     3481 cttgcttgct tattttctcc atctctttcg taacttaatg aaattttttg accaatctct
     3541 aaagttccta tataattttt aagatcaata ggacttttta taaccttatc attaacttta
     3601 gtaactaaat ctccacgctt aagccctgct tcatcagcac ttgaaccttt ttgaacatca
     3661 gtgattaaag ctccttcttg atttttgtaa gcttttttag tatcaccttg caaagctaaa
     3721 atagtcacac ctaaaaatcc tctatcaatc ttgccttttt caataagttt tttagctata
     3781 tctttaacca tatttgaagg tatggcaaaa cctatgccgt tatttccacc accacgagaa
     3841 agaatagctg aattaatacc tactaaatat ccgcgactat ccaccaaagc tccacctgaa
     3901 tttcctggat tgatagaagc atctgtttgt ataaaatttt catattgatt taaacctata
     3961 ttgtctttat ttaaagcaga tattatccca cttgtaacac taaaaccaac tccaaaagga
     4021 tttccaagtg caaaaacaac atctccttcc attaaatcat cagaatttgt aaaagtaata
     4081 gctgaaagat tattagcctc tatttttata acagccaaat ctgtttttgg atctttacct
     4141 ataagttttg ctttatattc tatgtcgctt cctggtaaat tcactgtaat cgtatcagca
     4201 tcatctacaa cgtgattatt tgttactata taaccatctt ttgaaataat cacccctgat
     4261 cccaaagaac tcaccacttc tttatcattt tttccttttc tttgagaaaa atcaaaatca
     4321 aaaaattgtt taaaataagg atcattaaaa aaatcatcca aagggcttgg acgatttgct
     4381 cttgtaatag tttttgaggt ggaaatatta accactgatt tttttgcatc tttaatagaa
     4441 tcatgataag aaagcactgc atttccagca gcaggattca cacgattagc cgttgcagtc
     4501 gattcgttaa aattaatact tgcagcaaat aaagcacttg ctaaacttaa tgataaaaaa
     4561 atctttttca tttcatttcc ttttgttctt aaagataaat tatctcgtaa aatattttac
     4621 tgtcttcata gtataaaacc gaaaatttac aaaattgtaa ataaaacctt gagtgataaa
     4681 aatttataaa acttgattga cttaggctaa agtttatgtt ataatttaat cctctatata
     4741 atcaagtaaa aatttttaag gaaatataac atgaatagtt tatacgaaac tcttggagtt
     4801 agcaaaaacg ctagtgcaga tgaaataaaa aaagcttacc gtcgcctagc tagaaaatat
     4861 catcctgata tcaacaaaga aaaaggtgct gaagaaaaat ttaaagaaat taatgctgct
     4921 tatgaaattt taagtgacga aaaaaaacga gctcagtatg accaatacgg cgattctatg
     4981 tttggtggac aaagttttca tgatttttca agaaatactg gtggggtaaa tttggacgat
     5041 attttaaaag atctctttgg aggaggcttt ggtggacgct caagaggggg ttttaacggc
     5101 ttttcttcaa aaggctttag cagtggtttt ggaggatttg gaggttttga agaagaaatt
     5161 ttagacagca atctagagct tcacattcct ttcgaaaaag ctgttaaagg cggggaacat
     5221 agttttaatt ttcaaggcga aaccattaaa tttaaaattc cacatggtat aaaagaaggc
     5281 gagaaactaa gaattcgctc taaaggaaaa caaagcagaa atggagctag aggagattta
     5341 atcattattg taaaaataga agaaagtcct atttacacaa gagaagatga tgatttatat
     5401 caaaaggttg atatttcttt aaaaactgca ctttttggtg gaaaaataaa tataaaaaca
     5461 ctcaaagaag gcaaggaaga agcaataatt aacataacgc ctaattcaaa aaataaccaa
     5521 aaaattcgtt taaaaggcta tggtgtgcaa aatagaaaaa gtgatattta tggggatatg
     5581 tatttgattt taaatgttgt tttgccaaat ttagataccc ttgatgaaaa atttatagaa
     5641 ctcttaaaag aaaaattacc ttaaagaaag gaataaaata tggaacagca ttatgatgaa
     5701 cctgtatatt taatcagtgt tgtggctaaa gttttaagca tacatccaca aaccttaagg
     5761 caatacgaaa gagaaggatt gatagagcca agtagaaccg atggcaaaat aagactttat
     5821 tctcaaagag atattgaccg tattaaactt atattgcgtt taacaagaga catgggaatc
     5881 aatcttgctg gagtagatgt tatcttaaaa ttgaaaaacc aacttcacga atttgaaaat
     5941 ttaattgatg aactacgctt agaattaagc aaacaacaag ataaagaagc ggctagtaaa
     6001 gccgttgtta agcataaaaa tagctttgat ttgatttttt atgagaaaaa ataaaaataa
     6061 tggataattt tttagaaatt tttttaatca ccgttgctat agctatagtt ttaaatgtca
     6121 tatttaaaaa atttgaaatt ccaactatca ttggatatat agctgctgga gaaatcattt
     6181 ctgaaattta tcatttaagt ggcaaaggcg aaatcactca tatagccgaa tttggtatag
     6241 tgtttttaat gtttaccata gggcttgaat tttcttttaa gcatttaatg gcaatgaaac
     6301 aagaagtttt tttaaacggc tctttgcaga tgcttacttg tggctttgtt tttatgctac
     6361 ttgctatagg aattttagga cttggagata aaagcgctac catagtaggc tttgcactag
     6421 cgctttcttc aaccgcagtg gtgcttaaaa ttttaaatga taatggcgat ataaatgagc
     6481 aatatggcag aaaagcattg ggaattttgc tttttcaaga tatagccgtt attcctttgc
     6541 ttttgcttgt agatattttt tcatccaaca atcaaaacat agaaaaactc ctttttacca
     6601 gtttaatttc agcacttatt ttaatcactt tattattttt cataggtaaa tatctagtgg
     6661 atagaatttt tagactcatt atccacactt cttctcagga aatttttatt agtactgttt
     6721 tatttatggt tattggagca agttttttag caaattattt tggattttct tattctttgg
     6781 gtgcttttat agcaggtgct ttgatagcag aaacaaaata taaacacaaa atagaagcgg
     6841 acttgatccc atttagagat ttgcttttag ggcttttttt cataactgta ggcatgcaaa
     6901 ttcaacttga tgtagtggcg caaaattggt ttttaatcat agttttaacc cttcttgtaa
     6961 tggctttaaa atttggcata gtttttggct ttttatttct ttacaccaaa aaaagagtag
     7021 cgcttaaaac agcttttgcc atagcgcaaa ttggcgaatt cgccctagca attttttctc
     7081 ttttacaagc aaaaaatatg cttgatatca aaacttcaca aattttaatt gttgtttcta
     7141 ttttaaccat gattatcacg ccttttattt taaacaatat aagaaaaatt accaatgttg
     7201 tagaagatat agcacttaat accaacgctg tgcaaaatat tgacagtaat atcaagctta
     7261 aaaatcatct tgttgttttt ggctacggac gcttaggaca agaagttgta caaaaaatca
     7321 aaaatacagg cgtaccttat cttgttttag aaagtgattt aaatttagta gaacttggag
     7381 ttagtcgggg tgaaaatgtc gtttttgcca atgctgctca agaagaaacc ttaaaaattg
     7441 ccaatataga agaatgtgcc gtagctatta tcacagttac aaatgaagct aaacttgaaa
     7501 ttttatgtca agtgctagct aattatccaa aacctataga tactatcatt catgtaaatg
     7561 gaactttgaa aaagatgctt ttttctagca tagatgaaaa tatacgcatc attcgctctg
     7621 aaaaagtaat cgctagaaat ttagttcaag aagcactaga atgccgcatt cataaaaata
     7681 cctaaggaag aattttgaca aaaaatgaag aaaaagcctt acgcgtaaaa tacctaagaa
     7741 atcttgaaaa atttttcaat ggcgctatat ctgcacttaa aaaagaagat tttgataaaa
     7801 ctaaatttga agaaagaatg ctaaaaaatg ctaaattttt tgaaaaaaat cccgcggtaa
     7861 atcttaactc aacctatgca aaaaatcttg aattttttgt caatgcttgt ttagattttt
     7921 ccaaagaaaa aagcgaactt ttaaatcttg ccaatgcttt agataagcaa aaaaaacaag
     7981 gtgagaaaaa agaaaaacac aaaaattatt taaaggatta tgaatgatta atgtattttt
     8041 tgatatggat ggaactttaa tcgatagcgc aaatgccatt tcttgtgcag tcaatgaaat
     8101 aagacaggat ttaaacctag ccccactttc aagagaaatc attatgcaaa ccatcaatac
     8161 tcctaatatt gactgggcaa aagaacttta taatatagaa aatttccatc attctagttt
     8221 taaagaaggc tacgaaaaat attttgtcaa acactatgaa caaagcgtgg tgctttttga
     8281 aggggtgaaa gaactgttag aatttttaaa aagcaaaaat tgttttttag ctattgctac
     8341 taacgccccg caaagctcac tttcaaacat acttaaaaaa cacgatatca ttccttattt
     8401 tgataaaatt ttaggcgtaa gtttaggcat agaacccaaa cctcatccta tgatgctaga
     8461 gcttttaaaa agcgaggctc catataaaac aagcgttttt ataggagata gtcaaaaaga
     8521 taaagaatgt gctaaaaatg ctaatttgcc ttattttcat gccaaatggt atcaaaaaaa
     8581 tttaaaagaa aatgaattta gcaacgctag tgaacttaaa ggctttttgc aaaagtattt
     8641 ataagttttt taatgaaatt ttagttaaaa ttagaaataa attttaaaaa gagtaaatta
     8701 tgagtgaatt attaatagaa attggtacag aagaattacc tgctattcct ttgctaaaag
     8761 aattagctaa tatagaaaaa aaatggaaca atgttttaga agaataccgc ttggtaagtg
     8821 attttaaatt ttattatact ccgcgtcgtt tagttttttt tcatgaaaat tttgcagaca
     8881 aacaagaaga tagctttgct gaatttatag gagcacctaa aaatgttgct tataaagatg
     8941 gagttttaac tcctgcggga caaagcttcc tgcaaaaagc aaggatcagt gaaaatgaac
     9001 tctcttttaa agaaatcaaa ggcaaggaag ttttgtacca tcaaaaagct attaaaggtt
     9061 tgcaaagtca agaaatttta ggagaaatgg tagaaaaatt tctaaaaagt cttagttttg
     9121 gcaaaagtat gcgctggggt gcaaattctt ttgaattcat ccgtgcgatc cgttctatag
     9181 cttgcatttt aaatgatgaa cttgttaatt ttcaaagcta tggagtaaaa agtactaaaa
     9241 aaactttcat tcacagaagc gtaagttatg atttgcaaga ttttaacaat gcaaaagaat
     9301 attttgaact actagaaaaa aactatatca tccttgatcc aatcaaaaga aaggaaaaaa
     9361 tacttgagca atttaaactc atagaaagtc aaaaaaatat acaaattgga gaagatgaag
     9421 agcttttagc tgaagtagtt gctatcacag aatatcctaa tgcactttta ggaagttttg
     9481 aagaagaatt tttagaaatt cctagcgaag taatcatcac ttcaatgaga gaaaatcaac
     9541 gttattttgc agtttttaac gataaaggct taagtaatca ttttatagta gtaagtaatg
     9601 cagtatgtaa ggattattca aaaatcatac atggaaatga aagagttttg cgtgcaagac
     9661 ttagcgatgc aatgtttttt tatcaaaatg atttacaaaa tggcttaaaa cctgaaaaac
     9721 ttgccaaaat gacctatctt gaaggtttag gcacaatgca agataaaagt ttaagagaga
     9781 ttaaaattgc tgaaatttta tgtcaaatgc tccataatga taaaatcgaa aatatcagca
     9841 cagcactaaa atacgccaaa gcagacttag ccacacaaat ggtttatgaa tttactgatt
     9901 tgcaaggcat tatgggaagt tattatgcgc aaaaaatggg cttagattat caaatttgct
     9961 tagctatcaa agaacaatat cttcctaatt ccgaacaagc tccacttcca agtacagaat
    10021 tttcaagcat agtagccctt gcaaacaagc ttgataccct tataggactt tttagcatag
    10081 gaaaaattcc aagcggaaca aaggatcctt atgccttaag aagagctgcc aatgggatca
    10141 ttaaaattgc tttaaattta aataaagaat ttgatatcca aattttatta gaaaaacttt
    10201 caaatcatta taaaagcttt gatatgcaaa ttttaaaaga ttttattttt gaaagacttt
    10261 atacttttta tgcagtcaat gcttcttttg taaaagcggt tttaagctca caaaatacag
    10321 atcttatcca tatcaatcaa agcgtaaatg ctcttataaa acttagcaaa aaagataatt
    10381 ttaatgaaaa ttttgcaacc tttaaaagac tagccaatat cgccactaaa aatcctcata
    10441 aagttgatga aagtcttttt gttcaagaag cagaaagtaa actttacaaa gcttttcaag
    10501 aaaaaactaa agccaactct ttacaagaaa aacttgaaaa tctttttgca cttaagcctt
    10561 ttattgatga gttttttaat caagtgatga ttaatgctga agatgaaaaa cttaaaaata
    10621 atcgccaagc tttggtttat gaaatttatg cggagttttt aaaaatcgcc gatcttaaag
    10681 agttaagcct atgaaagccc tatggattct tttaagcctt actctttggc tttttggagc
    10741 tcaaaattta gaactcatca aaggtcaagc tttatttttg gaactagata agaaagattt
    10801 tttatcttta aaaaataatg ataaaaatat tcccaccttt gcacatccta aaaatcaaga
    10861 aaaaattcta gctatttttt ccttacctta caaaaatccc ccgcaaaaca ccaaacttat
    10921 cgcattttat aaagataaaa aagaagaaat tttcataaaa actttagaag gtaattataa
    10981 aagtgaaaaa ttgcaaattg aaaacaaaaa gatttttccg ccaaaaacca tacaagaacg
    11041 catcactaaa gaattaaaag aagccaatgc gatttatagt tcttatactc caaaagcttt
    11101 atttaacggt gcttttaata tacctttaaa ttcttttatc acaagtgatt ttggcaaagc
    11161 aagaactttt aatgaaaaag tagcaagtta tcacagcgga acggacttta gagctaccac
    11221 aggaacacct atttatgcag ccaattcagg tgtagtaaaa attgcaaaag atcgttattt
    11281 cgcaggaaat tcagtagtca ttgatcatgg ttttggaatt tattcacaat attatcatct
    11341 ttctaaaatc gatgttaaaa taggacaaaa gataaaaaaa ggtgaactta taggacttag
    11401 tggggctaca ggtagggtaa gtgggccgca tttgcatttt ggaattttag ctggaggcaa
    11461 acaagttgat cctttggatt ttgtatccaa atttaatgct atttttcaat gaaatttagt
    11521 gactttttcc atgcttggct ccatgaaagc tattataaaa atgctgtaag tataggaaaa
    11581 aacggagatt tttttactgc tgtgagcgta ggaaatcttt ttggcacact tttagccaag
    11641 cattttttaa atttaataga tgaaaaaatt ctcaaacctc cactagaact tgtagaaata
    11701 ggcgctaatg aaggctattt aagtcgtgat tttttagccg ctttgcttga attaagacct
    11761 gaaatttttt ctcaaatttc ttttttcatc atagaaccac atgaaaaatt aagaacttta
    11821 caaaaaaaga ctttagaagg agtggaattt actcacaaaa atagtcttaa agaatgccat
    11881 tttaagaacg cttttttctt ttgcaatgaa ctttttgata gttttacctg cgaacttata
    11941 gatcatgata aaatggcatt tgtagaaaat tttaaactta tttttaaaaa tatggatgaa
    12001 aatttgatca caaaatgcaa agctttaaat cttacaaaag gcgaactcag tttagagctt
    12061 gaaaattttt ttaaagattt aaaccaaact tgtgagagat ttatatttgc gggatttgac
    12121 tatggaactt taaatccaca aagttttagc ttaagaatct atcaaaagca cgaagttttt
    12181 agcccttttg aagtatcttt aaaagatttt ttcggcaaaa gcgatctaac ttataatgtc
    12241 aattttactc atcttcaaaa actcatcaaa gaatatgatt ttaaaccttt agcttttaaa
    12301 aaacaaagtc ttgctttcat ggattttggt tttgaagatt tattagaata cacaaaaaat
    12361 aaaaacatta aaacttacga aagtttttta tctcaagcta aaattttatt ttttaatttt
    12421 gatgaaaaat ttcatttttt cgaatttcaa aaaaactaaa attttatatt tttcatactc
    12481 gctaaacaaa ccccctctct taaaccctca tcaatgacta gaagtttatg tttatcaaac
    12541 aaagcataaa acagcaaaca acctgcactc aaataatttt ttctcatcgt gcctacttct
    12601 tttatagctt ttttttcttc catatgaaaa agtttaatag cataatttaa aaaatcctta
    12661 tggcaaagtt ttttaccatt tactttagtt gcttcatact tttcatagct tatattttgt
    12721 tttaatgcgc taagtgtggt aggaactccg gaatttaaaa ccaccgtttt agcccctaaa
    12781 gaacaaagtt cctttttaat catagccacc tcatcaaaag ccctaaaagc tagatgcttt
    12841 aaatagggat ttgcaattaa aaaatgaatt ttaagttttt tatctttaat atttatgata
    12901 aatttaggat atttttttat caatttttta taagaaatac aagttttata ataagaatgg
    12961 caattttttt cataaaaact aataatacca aaatcaaaac ttttaaaact ttttccaaaa
    13021 gaaagctcac aagaagcccc tcctaaatca caatacgcaa actctcccca aattttaagc
    13081 cttcttaaac ctgattgcat acctaaaaca ctaatcttag cttcactttt ggcatctata
    13141 agcttaaaat caatcccaaa ttcttttttt aaatgggcaa aaatttcatt tgtattgctt
    13201 gcctttctaa aagctgcagt cgctacagct ctcactttac ttaaatcttg ctctttagct
    13261 aaaatactca aagtattttt taatctttgt atggcttctt tagaaatttc tccactttga
    13321 tttagatttt tcgctgcccc aataacaaat tcatattctt ttaatttatt taatttttca
    13381 tccatttgta ctgctcttaa agtatttgaa ccaagatcta tacctaacat gactttcctt
    13441 atttgatttt atagtataat agcaaaaaag ttctaaagga aaaatatgct tttaggtgta
    13501 aatatcgatc atattgcagt gttaagacaa gctagaatgg taaatgatcc tgatctttta
    13561 gaagctgctt ttatagtagc tagacacgga gatcaaatca ctttgcatgt aagagaagat
    13621 cgccgtcatg ctcaggattt tgacttggaa aatattataa aattttgcaa aagccctgtc
    13681 aatttagaat gtgctttaaa tgatgaaatt ttaaatttag ctcttaaact caaaccccac
    13741 cgcgttactt tagtgcctga aaaaagagaa gagcttacta cagaaggggg gctttgttta
    13801 aatcatgcta aattaaaaca aagcatagaa aaacttcaaa atgcaaacat tgaagtttca
    13861 ctttttatca atcctagttt agaagatata gaaaaatcaa aaattttaaa agcccaattt
    13921 atagagcttc atacaggaca ttatgcgaat ttacacaacg cactttttag caatatctct
    13981 catactgctt ttgccttaaa agaacttgat caagataaaa aaaccttgca agctcaattt
    14041 gaaaaagaat tacaaaattt agaactctgt gccaaaaaag gcctagaact tggcttaaaa
    14101 gtagccgcgg gacatggttt aaattacaaa aatgtaaaac ccgtagtaaa aattaaagaa
    14161 atttgcgagc taaatatagg acaaagcatt gtagcaagat ctgtatttac aggacttcaa
    14221 aacgctattt tggaaatgaa agaacttatt aaaagatgaa aaaactagcc attagtatag
    14281 gcgatataaa cagcatagga cttgaaattt tagtgcgttc tcatgaagaa ctaagcaaaa
    14341 tctgcacacc tttttatttt atccacgaaa gcttacttaa taaagcttta aaacttttaa
    14401 atttaaaact ttttaatgca aaaatcgtag cttttaaaga tgacaaagac tatgagttta
    14461 attttataaa aaaagaaaat tctcttgaaa tttactcttt ttgccttcct ttaggcttta
    14521 aagtggatga aaattttgaa atccaagccg gagaaataga tgcaaaaagt ggactttatg
    14581 gttttttaag ctttaaggcg gcaagttatt ttgtctatga aaaacacgcc catgccttac
    14641 ttactctacc tatacacaaa aaagcttggg aagatgcagg acttaaatac aaaggacaca
    14701 ccgatgcttt aagggatttt tttaaaaaaa atgccattat gatgttaggt tgcaaagaac
    14761 tttttgtagg gctttttagc gaacatatac ctttagctaa agtgagtaaa aaaatcactt
    14821 ttaaaaattt aagtatcttt ttaaaagatt tttacaaaga aacgcatttt aaaaaaatgg
    14881 ggcttttagg ttttaatcct cacgctggag attatggagt tataggtgga gaagaagaaa
    14941 agatcatgga aaaagctata gcctttgtta atgccttttt acactctaaa aaagatgaaa
    15001 aatttttcaa aaaagcctta aaagatgaaa atttacaaaa agaattgctt ttaaatttta
    15061 aaggcaaggg cgtttatcta ccctatcctt tagtggctga tacagctttt actaagactg
    15121 gtttaaaaaa ctgcaatcgt ttagtggcta tgtatcacga tcttgccctt gctcctttaa
    15181 aggccttgta ttttgataaa agcatcaatg taagtttaaa tttacctatc atacgcgtta
    15241 gcgttgatca tggcacggcc tttgataagg cctataaaaa tgctaaaatc aacactaaaa
    15301 gttattttga agcggctaaa tttgcaatca atttacattc taaagcttaa atttagccct
    15361 agaatcaatc aaatcttctt tagctaagct gtctataaaa tcttgcaaat ctttattggt
    15421 atttaaactt tgagtgagta aattttcata tttatcaact ttatttttaa aaatttgctc
    15481 taaaacttct ttagtctttg tatctttttt tgctctttgc ataagttcta ataaaacctt
    15541 aatataagct tcttgcatgc aatcacttgc attgagtaaa gataaaagag gattttcccc
    15601 tgcttttgta ttttgcatat tttttataca aatttttctt tctttaagca tcttttttga
    15661 aatggcttta aaatcttttt tcatcttttt atctgctttt tttgaaatat tttgatataa
    15721 actactatag atgttatcta ctaaagcaag ttttttatta tcaaattcat tacgcacacc
    15781 aattttattg catatcataa gttcatcatc acttttgcca tcatatttga ttttagagca
    15841 atcaaaacta ggttttactt catctttata aataagctca tcaaaactca aagcccctaa
    15901 actcgccaaa cttaaaccaa gcaataaaat aatttttttc attatttacc tttaaaattt
    15961 ttattttatt ttaacaaaaa tattttgaat tttttaagga aattaagcct ttattttatt
    16021 ataatgcgtt tttatttttt ataaggaact taaaatgcaa aattacaaaa aagctctttt
    16081 tgcactagct cttagtgctt tttgtatggg cgtaactgaa tttgttatgg caggagtttt
    16141 ggttgatgtt gaagcgtatt ttagcgtaga tgcaaaaacc gcgggctatc ttacaacctt
    16201 atatgctata ggtgttgtta taggtgctcc tcttatcacc atacctttaa gtcgttttca
    16261 tagacataca caacttttaa tcaatcttgg aatttttgct ttagcaaatt tcatcatctt
    16321 ttttagccaa aatttctatc ttactgcttt tgcacgcttt atagcaggaa cacaacatgg
    16381 ggtatttttt gtcattgcca ccttagctgt aagtgctata actccagatg ataaaaaatc
    16441 aagtgctcta gctataatgg tcacagggct tactgtagcc ttagttactg gagtgccgct
    16501 tggaactttt atagggcatt attttggctt taaatttatc tttttactca tttttatcat
    16561 tacaagtcta gcattttttg gagtatggca tatgatgccc aaaaatttac atcctagccc
    16621 aaccaatctt aaaaatctaa tccctgcttt ttctcatcaa aatttgttaa aaacttatac
    16681 tataaccatt tgtagttgtg gggctcaatt tgttctttat acttatttgc aaaaaatact
    16741 tgtagaaata agcggtttta aagtccaaga tacagcttat atcttgcttt tatatggaat
    16801 ttgtgcaatt tgtgggaatt tatggggcgg aaaaatagta gataaaaaag gtgctatttt
    16861 ttctttgcgt cttattttaa gcatacaagt tctagtattt ttaagtgtat ttctcaccat
    16921 gcattctaaa attttaatca tttttagcgt agctttgata ggattttttg ccttttcaac
    16981 catacctgca ctaaaaatgc ttagcattac taaagctaaa cgccatactt ataaagtcat
    17041 agacagtaca gtaagtgtga atgaagcagc ttttaatgta ggcatagctt tagcaagttt
    17101 tttaggtggg attgttttag caagattggg tatagaattt aatgctttat tttcagcact
    17161 ttttgtaagc cctgctttga tttttgcctt gctttttgcc aaagataaat taaattataa
    17221 aaaatttcaa agaaaaagtt ttacaaaggt ataaattgga atagaaattg cttgcttatt
    17281 taatgtaaag ttaaataaag gaggagaaaa tggtagtaga taatactcaa aaaacatcaa
    17341 atgctatctt tagcaccaca actaaagtta aagaaaaaaa tacttcggca gatgaatttc
    17401 aagccacatt aaatgaagta aaaaacaaag aagaaaagga agataaaaaa acaaactcaa
    17461 gcaaatttac taacgaagac attgatcttg gtgctgttag agaagatttt agatcttatg
    17521 cttggcaaaa aatgagagaa gatcaataca aaaaaaatga ggagactttg ctaaataagc
    17581 tttttactac aattgacgca ggaaatgcca caaacaatac aaaggcttaa tatacaaatc
    17641 aatcaaaact caaactacat aaacgagaat tccaataatt ctcgtaaaat ttctaataac
    17701 tctggataaa atgaaaaaat ttattatttc ctctatatga agaaaatata gaaaaattga
    17761 ccaatttaat ttatcaaatt ctgttataat tttgctaaaa acaaaggaaa ataatgattt
    17821 ttatcgatgc ttgctttaaa aaacctacac cctacacccc tatttggatg atgcgtcaag
    17881 caggaaggta tttgccagaa tatatggaag taagaaaaca agcgggtgat tttctctctt
    17941 tatgcaaaga ctataaaaaa gcttctgaag tttctttaca gcctattgat attttagatg
    18001 tagatgcagc aatcattttt tcagatatct tagttgttcc tcttgaaatg ggtatgaatt
    18061 tacgttttga aaaaggagaa gggcctgttt ttggtaatcc tatttcaacc ctagaagatt
    18121 tagaaaaact tgacgatcaa aatgcacata aaaaattaaa ttatgtctat gatgccttaa
    18181 agcttacaag agaaaaatta tctcaaaaca aggctttaat aggattttgc ggaagccctt
    18241 ggactatagc tacctatatg atagaaggaa gtggaagtaa aaattatgca aagtgtaaaa
    18301 aaatgcttta tcaaaaccca gaacttttac ataaaattct aaacaaacta actcaagttt
    18361 taaaacttta tttagaagag caaattaaag caggtgctaa tgctatacaa atttttgata
    18421 gctgggcaag tgctttagaa tatgataagt tttttgaatt ctcttttaat tatatgcttg
    18481 aaatttcaaa ttttattaaa agcaaatacc caaatatacc tgtaatttta ttccctaaag
    18541 gcattagcgg ttatttggat agaatcgatg gcaattttga tgtttttggg gttgattgga
    18601 gcaccccgct tgatttagca cgtgataaac tatcacacaa atacactctt caaggcaaca
    18661 tggagccttg cagactttat gataaaaatg ccatcaaaga aggagtggaa aaaatactaa
    18721 aaaccatgca aaataaagct catattttca acttaggaca tgggatcttg cctgatattc
    18781 ctgttgaaaa tgcaaaatat tttatcaagc ttgtacaaga aagttcagct aaatgaaaat
    18841 actctttggt cctgttagct ctaggcgttt tggaagatct ttgggtatag atttaagccc
    18901 tagtaaaaaa caatgcaatt ttgattgtgt ttactgcgag cttgatccaa aaaaagccca
    18961 agaaaaacaa gatgaaatta tcagcataga taaaattatc tctgaagtta aagctatgct
    19021 tgaaaaaaat gttgaatttg attttcttac ccttactgcc aacggagagc ctagtcttta
    19081 tccttattta aatgagctta ttttatcttt acgcagcatt gctaaagata aaaaattgct
    19141 tattttaagc aatggtacag ctgtattaga tgaagacaaa tttaatgctt tgctaaaact
    19201 agatgtggtc aaatttagcc tagatagtgc agttgctaaa actttttatc gtattgatag
    19261 agctttaaaa aacattgact tagaaaaaat gatagaaaaa atggcagatt ttagagctag
    19321 gtttaatgga gatttgatta tggaaattct agttgttaaa gatcttaatg acaacgaaga
    19381 agaatttgaa gcacttaatc aagctttaaa aaaaatcatg cctttaaggg ttgatctaag
    19441 caccatagat agacctcctg cttatgctgt taaaaaagta agcgaagaaa aacttttaga
    19501 actttctaaa cttatagatt ctactcctgt actcttagcc aaaagacatt atgaaggtga
    19561 aaaactaagc ttcaatgaag aagaattatt aaaaatgctt catttgcgct cacaaagcga
    19621 aatagacatt gaagtgaaat ttgatgaaca atccaaaact ctcttaaatc aacttatcaa
    19681 agaaaaaaag gtaaaaattc tcgatttagc tggagttaaa ttttataaag tttaggcctt
    19741 tggcaaatac tttctaagta aagttataag atcatttcta cttacatcac ttaaaacttc
    19801 gctcacacaa tcaaaatccc taactttttc ctttgaaaaa aagatgatat ggctttgtgg
    19861 atgctgtttt ttataagcac ttagcaaatt tctcatttgc tcaagatcaa atttaattaa
    19921 ttcataatca agtaaaatca aacgataagt ctccttgctt aattcttgtt ttaattgact
    19981 aaaagaattt atacatatat ttttatcaca ttgtttttct attatattaa aaaacaaggt
    20041 tgcatcaaaa tcattttgtt taaaaagcaa tacattattt tgataagggg ttttaaattt
    20101 taaagtgcaa accttatcaa gcttgttttg caaaatattt tcaagatctt ttttttcaaa
    20161 aggtaaagtt aaaaaatact cataatgtgt atttttatgc cgacccatca ctataaaatc
    20221 ataatttttc tttacatttt tattgaaaat tttatccttg ataaaaatca aatgaaagtc
    20281 attaacatca aaacttaaat ttttaaaaca agtgctttct atgccaaaat acgaaagtaa
    20341 atttgcaagt aaaaaattct caagctcatc attattaact atggccacac ttgcttcaaa
    20401 ttgcaaaacc tttccatgag atgttcctat aatgctttta tgatgctcta aagcctcatt
    20461 taattctaat ctaatttgat ctttttgaga atttaaggca tttaaaatca aagaattaat
    20521 ttctttatta tacccttcat ttaagcaacg cattgcatta gatatattta taagctgata
    20581 taaattttct tccaataaat gcaaatatct atctttttca tgggatattt tagttaaatt
    20641 ttggctcgta gtttcaaatt tttcctttaa caaatcaagc gcactatcaa catcaatctt
    20701 tttttgaaaa tttaaaaaat cattttgcat gcaaaaaatt ttttgatata ttttgtttat
    20761 atttctattt tgcctaaaag caaaaataaa aagtgttaaa gataaaacaa aaatgctaga
    20821 aaacatacct attttcagtt gttcagtaac actatcaagc tttgagatat caatacttaa
    20881 atacgctaaa attagattaa aaataaaaat tatccctgct aatatcaaat caattttcct
    20941 ttatcttttg cgccgctttc ctgcctacaa gcattgtaag atctttaaaa tcagccttat
    21001 atatagattc aaaatttcca taatacgcta aaagtttttg cataacccct gaactaagtc
    21061 ctaaatttgc aagcttagaa cttttcaagt cctgtttttt cttagtattt tgatgaaagc
    21121 taatagcaaa acggtgtgct tcatctctta atttctgtaa gaattgtagt tttttatcgt
    21181 taatgcttag actaaattct ccttttaagg aatgaatttt atccttagca ccccctttag
    21241 ctctatgtgc ttttgcatcg attttttctt ttgaaatagc taaaatatcg acatttgccc
    21301 cactacttac aatgatttct ttagccaaat caagcaaagc ctttccccca tctataagcc
    21361 ataaatcagg aggaggtatt ttatcaaagt ccaaagccct acgcgttaaa acttcacgca
    21421 tttgatcata gtcattttta tgttttaaat gaaatttacg atattttgac ttatcccaag
    21481 aatttattct ataagttacc atagctccaa catttgccac gccttgcaaa tgagaattat
    21541 caaaaatttc tatatcattt ggtaaatttt caagctcaaa ataagacttt aattcttttt
    21601 gtatagtaaa atcatgattt ttttgctctt tttctatatt taaaagggca ttttgaaaag
    21661 ccaaatcaca aattcttctt ttttctccta ttttagggat tttaatactg atttttttat
    21721 caaacctttg gcttaaaatt tcttctaaaa gcactctatc ttcaaattct tcataaacat
    21781 aaataacatt tgcaagcaaa ggaatatcca tgctaaaatt ttctaaaatc agttgcttat
    21841 aaatttcatt ttgatcccat tgtatatcat tttttatagg agtaatctta gaatttgcac
    21901 tgataatttt tccattttgc accacaaaac gcaaggttga aagcacggaa tttttaaaag
    21961 ctaaagcaaa tacttcaaaa tcttctaatt ttgcaatatc tatttcaacc ttaacttcca
    22021 aatctttaat cattgcaatc tgatctctta ctttagctgc ttcttcgtaa ttttcatttt
    22081 gtgctaaaac aagcatttgt ttttctaagt ttttaagcaa aacactagga tttaaaagtg
    22141 cgtgtatagc ctcatctaaa atttcaaggt atttttccct gctgatgagt ttatcacaag
    22201 gcgcaagaca acgagaaatt tgataaaaaa tacaagggga tttacaactt gctttttgct
    22261 ttaaaggata gtataaataa agcgcatcta aaagctctct agcgccttta aaaaaagggc
    22321 caaaatattt aattttgctt ttttttacta attttctagt gatctcaaag cgtggaaatt
    22381 cttcttcaaa atccacataa atataaggat aagttttatc atctcttagc aaaatattat
    22441 attttggatg cagttgtttg ataaaagaat tttctaaaat caaagcatca gcctctgaat
    22501 tagtagcaat aaattccaaa tgcactgttt cttcaatcat tttttgaatt cttaaagaat
    22561 ttcttggatt tgcatgtaaa tttggagtaa aagcaaaata agatctaaca cgatttttaa
    22621 gatttttagc cttgcctaca tataaaagct ttccttcttg attgaagtat tgataaacgc
    22681 cagtactatt aggaagagtt tttaactcat tttctaaatt ctctttagtc aagattagaa
    22741 ccttttttta taagctctct taaatcttca aatttcttaa ataatttttt atctttaaag
    22801 caatttttaa attcaccctt agaaagctcc aaataagaat ttttagagag tttttcatca
    22861 tttttgtttt tatttgccgc ataagtgtat ttttgagaaa agatttttat atcttttata
    22921 tcaacaaatc cacttaaagg atatttctgc ccatatgctt ttatgagaaa tttaatataa
    22981 attttgctat catcatgatt taattcttga taagctgctg gatgtaaggt tattatattt
    23041 aaaatatgat tttttacata aattttagca atcaaacgtt gcttagcaag cggaaaagaa
    23101 cttaaaaaat ctttgcaaaa aaataaggtt tttaaaggct tataatgagg tttatccatc
    23161 aattcattaa taacagcact agcattttta gtcatcttaa tattatttct ttttcccata
    23221 agatgatttt agcatttctt ttcttaattt tcttctgtgc ttgcggatat aaaggcaacc
    23281 ctcaatacac aagctatgaa caaaatggtt cggtaaaaac cattaaaaaa tacgaacaat
    23341 tacataggtg gtaaataatg aaaaaagcag atattttagt tttagacttt ggctctcaat
    23401 acactcagct tatagcaaga cgcttaaggg aacaaggagt ttatgcagaa attttacctt
    23461 ttaatgtaag cttagctgat attaaggcga aagaaccaaa aggtattatt ttaagcggag
    23521 gtccagcaag tgtatatgca actgatgcgt atttttgcga taaaggtata tttgacttaa
    23581 atctacctgt tcttggaatt tgttatggta tgcagcttat ggcacatcat tacaaagcta
    23641 cagtagcacc tgcaggacat aaagaatacg gcaaagcaaa catagaaatt aaaaaagata
    23701 acgctttgtt taaaaatctt ccaaaaaaac aaaccgtttg gatgagtcat tctgataaag
    23761 tagaaaattt acctcaaggt tttgaagttt tagccacaag tgaaaatagc cctttttgtg
    23821 tttttggaaa cgaagataag aaattctttg ctctacaatt tcacccagaa gtacaacaca
    23881 gcgaatttgg caaaaatatc ttaaaaaatt ttgctaaata tgcttgcaat tgtgaaagta
    23941 tttggaatat gggttctttt gcaaaaactc aagcagaaaa aatccgtgaa gaagtaggca
    24001 atgataaagt gctttgtgct gtaagtggcg gagtagatag tagcgtagtt gctgcacttt
    24061 tagctagtgc tataaaagag caaattatag tagtttttgt agataatgga cttttaagaa
    24121 gtggagaaaa agaacaagtt gaatttatgt ttaaaaacac tttaggcatc gatctcatca
    24181 gcattgatgc aagtgaaatt ttcttaagtc gcttagttaa tgtcacagat cctgaacaaa
    24241 aaagaaaaat cataggaaat acctttatag aagtttttga agaagaagca aaaaaacata
    24301 aagatgtaaa atatcttgct caaggcacac tttatactga tatcatagaa agttctgttg
    24361 taggtgcaag caaaaccatt aaaagccatc ataatgtagg gggcttacct gaaaaaatga
    24421 atcttaaact catagagcct ttaaaagaaa tttttaaaga tgaagtgcgt gccttaggac
    24481 ttgagcttgg acttagcaaa gaagtagttt atcgtcatcc tttccctggg ccaggtcttg
    24541 ctatacgcat tatgggagaa gtaaatcgcg ctagcttaga actattacgc aaggctgatg
    24601 taattttact tgaggaactt aaaagtacag gttggtatga taaaacttgg caagcatttt
    24661 gcgtactttt aaatgttaaa agcgttggag ttatggggga taaccgcact tatgataatg
    24721 cagtttgtat acgcgttgta gatgcaagtg atggtatgac agctaccttc tcgcatttac
    24781 cttacgaaat tttagaaaac ataagtcgcc gtatcatcaa tgaagtagaa ggtataaatc
    24841 gcgttgttta tgatatctca agcaaaccac ctgcaactat agaatgggaa taatccattt
    24901 tttc
//
LOCUS       DAPIWJ010000014        24793 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.014, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000014 DAPIWJ010000000
VERSION     DAPIWJ010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24793)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24793)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24793
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.014"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            66..842
                     /gene="surE"
                     /locus_tag="RJ259_000429"
     CDS             66..842
                     /gene="surE"
                     /locus_tag="RJ259_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HDV7366169.1"
                     /translation="MKEILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSAC
                     SHSITLTKPLRFVKVGKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDYKNALQITKKIIQNIFDKGFP
                     LEKKEFLNINFPAKSKIKGIKICKAGKRVYNFEAHSNVNPRGVEYYWLAAANLDFEDE
                     KNSDIALLKKGYATITPIMLDLTAYERMKKVKKWLKANDE"
     gene            832..1491
                     /locus_tag="RJ259_000430"
     CDS             832..1491
                     /locus_tag="RJ259_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HDV7366170.1"
                     /translation="MMNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYR
                     SGFKNLTLIDADKFEITNQNRQIHSENIGEEKAKVFERIYKVKGIVSKIDENFLKNFD
                     LSEFDLIIDAIDDIPAKVALAHLIDFKKQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAKK
                     S"
     gene            1475..1903
                     /locus_tag="RJ259_000431"
     CDS             1475..1903
                     /locus_tag="RJ259_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7366171.1"
                     /translation="MLRKADIKDLNACLSLFEQSVKTLCAWIKIDRQQWEEKFKYDEI
                     FVYEKRGKIASFISVKQEQKLLDLLFTHPDFVRQGLAQNLLDFILKTYLHNEIYTFAS
                     LSAKDFFLKNGFELIRENKVIKEGQNLKKILMKKDVIYKN"
     gene            complement(2013..2393)
                     /locus_tag="RJ259_000432"
     CDS             complement(2013..2393)
                     /locus_tag="RJ259_000432"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HDV7366172.1"
                     /translation="MNITLLKSKIHRASVTEARLDYIGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKP
                     KVVFVDENNTATKITNYEKHGAIF"
     gene            complement(2390..3238)
                     /locus_tag="RJ259_000433"
     CDS             complement(2390..3238)
                     /locus_tag="RJ259_000433"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HDV7366173.1"
                     /translation="MQVITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDATQMYLKNF
                     STYVDMNTITDKLCGAKRPGHFRGVCTVLTKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSKEERKASLAISQSIFLAEKLVREGEKN
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIENITDNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            complement(3249..4073)
                     /gene="panB"
                     /locus_tag="RJ259_000434"
     CDS             complement(3249..4073)
                     /gene="panB"
                     /locus_tag="RJ259_000434"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HDV7366174.1"
                     /translation="MRKSMISFLEKKAKNEKITMVSAYDYHSARILDNSDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSQEHSFDYLDDELLDKLY"
     gene            4293..5066
                     /locus_tag="RJ259_000435"
     CDS             4293..5066
                     /locus_tag="RJ259_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-193"
                     /protein_id="HDV7366175.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFSRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKVKNDG"
     gene            complement(5151..6035)
                     /locus_tag="RJ259_000436"
     CDS             complement(5151..6035)
                     /locus_tag="RJ259_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HDV7366176.1"
                     /translation="MIRIDINHPMNTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNIKENIA
                     YAASSKAKVSELLALMKLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSNISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDVKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(6032..6706)
                     /gene="modB"
                     /locus_tag="RJ259_000437"
     CDS             complement(6032..6706)
                     /gene="modB"
                     /locus_tag="RJ259_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HDV7366177.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKSKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYSLAHQYAFILFIFSFLVLFSLYFIN
                     KKMSFQ"
     gene            complement(6699..7100)
                     /locus_tag="RJ259_000438"
     CDS             complement(6699..7100)
                     /locus_tag="RJ259_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HDV7366178.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSVLMLELKSLENLKI
                     GVSVELLFKEHELCFSASKTLLSVENSFLAKITKIKKGKLLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            complement(7097..7846)
                     /gene="modA"
                     /locus_tag="RJ259_000439"
     CDS             complement(7097..7846)
                     /gene="modA"
                     /locus_tag="RJ259_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HDV7366179.1"
                     /translation="MKKFVVFFGILLFVSCLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGVENLKEKANKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAVIIDAKYFSPLEQSYVITKY
                     AKDKKLAFEFNEFIGSSKAKEIFKKYGFSTP"
     gene            complement(7897..8583)
                     /gene="bioC"
                     /locus_tag="RJ259_000440"
     CDS             complement(7897..8583)
                     /gene="bioC"
                     /locus_tag="RJ259_000440"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HDV7366180.1"
                     /translation="MNFLKAKDYEKHAKVQDFMGLKLCEILKNLRISHFEKVFEFGCG
                     RGELSKKLQNFITFDEYLKNDILDFKENSSILIFDMNEIAKQDLSKEKFDLIVSNATL
                     QWLDLKRIIPSLRDMLNQNGILLLSTFAEQNLKEIKQSTGFGLNYFSLNELEQIFKVY
                     FNEVKITQELIKLSFDNALDVFRHLKLSGVNSLGFYPLNKGFLKEFEEKFQNKLTYHP
                     VFILCKNDIK"
     gene            complement(8580..9191)
                     /locus_tag="RJ259_000441"
     CDS             complement(8580..9191)
                     /locus_tag="RJ259_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HDV7366181.1"
                     /translation="MKYEFLCKNPDSKKLIVVFGGFASHSSHFSHLKSDKNVILFYDY
                     ENFDLNFDFKAFDELFLIAFSMGVCVANRLLKELNFKQKIAINGTNLGIDKSKGIHPA
                     IFRKTLQNFKLENFKEALFKERKNLTKDFIFKDEKALKIELEKLFDFALVKQEENLLW
                     DKVYSSKKDEIFPPNALKNAFSKLIFLNEPHFAFFHFKTWDEL"
     gene            complement(9188..10330)
                     /locus_tag="RJ259_000442"
     CDS             complement(9188..10330)
                     /locus_tag="RJ259_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HDV7366182.1"
                     /translation="MKLEKILQDLEQNHNLRTLTPLKHENKFVYKQDHKLLNLVGNDY
                     LYLASSKELKAEFLNTLKEQDLFFSSSSSRSLSGNFEIYEKLESFLKTKFKDKEILHF
                     NSGYHLNISCIAALSSVSKTLFLTDKFIHASMIDGLRLGRADFFRFHHKDMNHLESLI
                     QKHYENYENIIVLSEALFSMDGDFSDFKTLCELKRRYDKIKLYIDEAHSVGCFDEEGL
                     GLVKKLALENEVDFLVFTFGKALASMGACIICDEKYKKFFINKARAFIYSTALPPINV
                     AWTQFIFKKMPYFKKEREKLELLSTFFKSKLQEKNHIVLGDAYIICLLLGENKKALEI
                     SQKLQKAGFFAPAIKEPTVPKNTARIRFSLHAGLNTEELERIIELL"
     gene            10398..11681
                     /locus_tag="RJ259_000443"
     CDS             10398..11681
                     /locus_tag="RJ259_000443"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HDV7366183.1"
                     /translation="MQNQILKNLDLKHIWHPCTQMKDHETLPLIPIKKAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKIANAIKKQVDELEHVILAGFTHEPIIKLSARLCEKV
                     GRNFNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKALLLECLSTPVPQGKDYTKELEILKDILEKNASEICAFILEPLVQCAGNM
                     HMYEARFIDEAIKLCHKFGVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLDIFEDENILV
                     KNQILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLFVFQKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYVLESLEQIFKEF"
     gene            complement(11668..12273)
                     /locus_tag="RJ259_000444"
     CDS             complement(11668..12273)
                     /locus_tag="RJ259_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HDV7366184.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKALDIILPKSKNLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP"
     gene            complement(12283..12597)
                     /locus_tag="RJ259_000445"
     CDS             complement(12283..12597)
                     /locus_tag="RJ259_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDV7366185.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELVSTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLIAVIITCTAGLKF
                     LS"
     gene            complement(12601..12939)
                     /locus_tag="RJ259_000446"
     CDS             complement(12601..12939)
                     /locus_tag="RJ259_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDV7366186.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWQYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIAILLLSI
                     IALKWVSKEA"
     gene            13073..13609
                     /locus_tag="RJ259_000447"
     CDS             13073..13609
                     /locus_tag="RJ259_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HDV7366187.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            13606..14151
                     /locus_tag="RJ259_000448"
     CDS             13606..14151
                     /locus_tag="RJ259_000448"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HDV7366188.1"
                     /translation="MILVVGLGNIGVEYENTRHNVGFMLIDLLLKESNFTNLTNSKFK
                     GELFKIGSSLLLLKPSTYMNNSGLSVKAVNDFYKCERMIVIHDDIDINLGALRFKKGG
                     SSGGHNGLKSIDTLCGNDYERVRIGVGKGENVISHVLGKFKSEEEITLSKVLEHAKKA
                     LLELIENDDLSAISSKYSLKA"
     gene            14153..15211
                     /locus_tag="RJ259_000449"
     CDS             14153..15211
                     /locus_tag="RJ259_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HDV7366189.1"
                     /translation="MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAAN
                     LDLLYVMFLSFSAVPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFL
                     WALFFCCIYIGLNFTSFAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQ
                     NSAQNIKIFNINDLNLSSFASAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDF
                     SELKSLEGFKPKIIEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVFTPFF
                     APFLMLIMYYFFPVIARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIV
                     VPIIILGCLSAYMYYKHR"
     gene            15255..16463
                     /gene="lysA"
                     /locus_tag="RJ259_000450"
     CDS             15255..16463
                     /gene="lysA"
                     /locus_tag="RJ259_000450"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HDV7366190.1"
                     /translation="MDYKQLKQEFNTPFYIYNFDFIKERFLNLKEAFKARKSQIFYAV
                     KANSNLSLLQMLANLDSGFDCVSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEY
                     DILYINLESEAEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEI
                     DIARKMYLYAKNSSFLEPVGVHFHIGSQLLDISPIHEAAAIVAKLVRELKALQIDLKF
                     FDIGGGLGVAYEKNECEPDLYDYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVL
                     YEKQNKTKRFVVVDGAMNDLIRPSLYEAYHEIILPYNQGEESLCDVVGGICESGDFFA
                     KARSLPSTQSDDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFEDQ
                     IALEEKFLKA"
     gene            16465..17232
                     /locus_tag="RJ259_000451"
     CDS             16465..17232
                     /locus_tag="RJ259_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HDV7366191.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYLIITNNTK
                     KLDFLEKLQQKGLVIKENAYIDPFSVLKHLLRPCKVAAFGADEFVKSLENLGFELDFV
                     NPSAVLVASYDDFKFKDFATMIELARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRRQNSKIDFEDIKIISDDFRGDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVFEFLKDLKCQI"
     gene            17220..18293
                     /gene="pheA"
                     /locus_tag="RJ259_000452"
     CDS             17220..18293
                     /gene="pheA"
                     /locus_tag="RJ259_000452"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HDV7366192.1"
                     /translation="MPNLEEFRNKIDAVDDKILDLLNERMTYVKSIGELKQSSGGSIY
                     RPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQTIAYLGPEGTYTHQA
                     ARSRFGAMSRYIALANIEDVFKELSNKEAKYGVVPIENNTEGAVGITLDCLGKYNELK
                     IFGEIYMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSAIEFVPSKSTAN
                     AAYLASQDKYAAAICSRIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKT
                     SILAHTAHKPGGLSFLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVK
                     KALKDIQEIVWLGSYLSGEKDEI"
     gene            18283..19377
                     /locus_tag="RJ259_000453"
     CDS             18283..19377
                     /locus_tag="RJ259_000453"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDV7366193.1"
                     /translation="MKFNEFLNNLSNYEPGKDIEVIAKEYGVKEVIKLASNENPFGTP
                     PKAIECLRQNANKAHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKL
                     NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCL
                     PNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNV
                     LYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAPFNVSNLALKAAVAAMDDDEFTE
                     KTLENNFSQMELYKEFAKKHNIKIIDSYTNFITYFFDEKNSTDLSEKLLKKGIIIRNL
                     KSYGLNAIRITIGTSYENEKFFTEFDKILR"
     gene            19429..21111
                     /gene="fliF"
                     /locus_tag="RJ259_000454"
     CDS             19429..21111
                     /gene="fliF"
                     /locus_tag="RJ259_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HDV7366194.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIIVVVGFLVFLALFRG
                     SGSNANNGYAVLVENVSPSSSAAIVAKLEQNNIPYKLESENKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSG
                     VPLDEQEAYEDDLVRAQIKFKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKDPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEE
                     LASVESIVKNTINFSATRGDSVVVQNLPFHRESIRVESKVKTFYNRFVEPFIPPVKYF
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGDNFNEDSIQYEVLLEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKDM"
     gene            21111..22139
                     /gene="fliG"
                     /locus_tag="RJ259_000455"
     CDS             21111..22139
                     /gene="fliG"
                     /locus_tag="RJ259_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HDV7366195.1"
                     /translation="MIKLSEEQKMVYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIAMAKNVDRSVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITYIEQSDERLAETIKELMFTFDDIQKLSTQAIREILKVADKRDLMIGLKG
                     ASEELKQKFLANMSTRASEAFLEEMGFLGAVRVKDVEDAQRKVVEVVQKLAEQGLVQT
                     GDADEMIE"
     gene            22147..22977
                     /gene="fliH"
                     /locus_tag="RJ259_000456"
     CDS             22147..22977
                     /gene="fliH"
                     /locus_tag="RJ259_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HDV7366196.1"
                     /translation="MVNRSNVISGGASDQHVVEGYRFKVISEFDNHTGEKKHTQTPDE
                     ENTNISLNDEKPVEENQVIASTQAVMETQIPTFQPSFVEDLLKKTDEMSSNIIKLQMQ
                     IESQENEFNNRLNSELENAKEKFTKEGYEKAKEEFQKELSDFKDKYLKSIAKLDNACE
                     NLENFIEKNEKELADTAIDIAKEVILKELELNSSKIAYALAKDLIGELKGASAIELKV
                     NAEDYEYLKEQFDQNAHIKISLDDAISKGSVVIISDAGNIESNLNSRLTKIKKMVNNE
                     "
     gene            22970..>24793
                     /locus_tag="RJ259_000457"
     CDS             22970..>24793
                     /locus_tag="RJ259_000457"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HDV7366197.1"
                     /translation="MSKKFAHTQEELEKLSLKELENLAASMREKIIQVVSKNGGHLSS
                     NLGAVELSIAMHLVFDAKKDPFIFDVSHQSYTHKLLSGKEEIFDTLRQINGLSGYTKP
                     SEGDYFVAGHSSTSISLAVGACKAIALKGEKRIPVALIGDGALSAGMAYEALNELGDS
                     KFPCVILLNDNEMSISKPIGAISKYLSQAMATQFYQSFKKRIAKMLDILPDSATYMAK
                     RFEESFKLITPGLLFEELGLEYIGPIDGHNLGEIISALKQAKAMQKPCVIHAQTIKGK
                     GYALAEGKHAKWHGVGAFDIDSGESVKKSDTKKSATEIFSKNLLDLASKYENIVGVTA
                     AMPSGTGLDKLIEKYPNRFWDVAIAEQHAVTSMAAMAKEGFKPFIAIYSTFLQRAYDQ
                     VIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDEQMMQNI
                     MEYAYLHQGPIALRYPRGSFILDKEFNPCEIKLGKAQWLVKNNSEIAFLGYGQGVAKA
                     WQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINN
                     FLQKYDLHVKVVSFEYEDKFIEHGKTSEVEKNLEKDVNSLLT"
BASE COUNT         8810 a         3482 c         4157 g         8344 t
ORIGIN      
        1 tttatactat gaagctttaa aaaaatatgt taaaatccag atttttatct tttgcaagga
       61 agacaatgaa agaaattctt atcactaatg acgatggtta tgaaagcgaa ggacttaaaa
      121 aactcattaa gatgttaaca aaagaattta aagccaagat caccatagta gctcctgcta
      181 gtgaaaaatc agcttgttcg cactctataa ccctaaccaa acctttgcgt tttgttaaag
      241 tgggaaaaag attttacaaa cttgatgatg gcactccagc agattgtgtt tatcttgctt
      301 tgcatgcttt atacaaaaag cgtttgcctg atcttgtaat aagtgggatt aataaaggtg
      361 ctaatgtagg cgaggatatt acctactcag gaacttgcgc aggagctatg gaggcggttt
      421 tacaaggaat tcctgctatc gctctttctc aattttataa aaaaagcgaa aaagaactag
      481 actataaaaa tgctttacaa attaccaaaa aaatcattca aaatattttt gataaaggtt
      541 ttcctttgga aaaaaaagaa tttttaaata tcaattttcc tgcaaaatca aaaatcaaag
      601 gcattaaaat ttgtaaagca ggcaaaaggg tttataattt tgaagcccat tcaaatgtca
      661 atccgagagg agtagagtac tattggcttg cagcggcgaa tttagacttt gaagatgaga
      721 aaaatagcga tattgcctta cttaaaaaag gctacgctac aataacacct ataatgctgg
      781 atcttacagc ttatgaaaga atgaaaaaag ttaaaaaatg gttaaaggca aatgatgaat
      841 gatagattta cacgtataaa atggctagtt ggagaagaaa aatttcaaaa aatttcacaa
      901 acaaaagttt tggtttgcgg acttggtgga gtgggtggaa tttgcgttga tgcgctttat
      961 cgtagtggtt ttaaaaacct tactttaatc gatgcggata aatttgaaat cactaatcaa
     1021 aatcgccaaa ttcatagcga aaatataggc gaagaaaagg ctaaagtatt tgaaagaatt
     1081 tataaggtta aaggtatagt cagtaaaatc gatgaaaatt ttttaaaaaa ttttgattta
     1141 agcgagtttg atcttatcat agatgccatt gatgatattc ctgcaaaagt agctttggct
     1201 catcttatag attttaaaaa acaaattttt atctcctcaa caggtggagc tagaaagctt
     1261 gatccaacac gcattaaaac tacaagtatt tttaaaactc acggcgatgc tttagcgaaa
     1321 aaatttcgtt atgagcttag aaaatcaggc tttaagggaa attttgatgt ggtattttca
     1381 gatgaggaag cgcattgtaa agatcttgga tcttttatgg gtgtgactgc atcttttggt
     1441 ttagccctag ccagcttggc attaagaaaa gttcttgcta agaaaagctg atattaaaga
     1501 tttaaatgct tgtttgtcgc tttttgagca aagcgtaaaa acactttgtg cttggattaa
     1561 aattgataga caacaatggg aagaaaaatt taaatatgat gagatctttg tctatgaaaa
     1621 aagaggaaaa atcgcaagtt ttataagtgt taaacaagag cagaaattgc ttgatttgct
     1681 ttttactcat cctgattttg ttagacaagg tttagcacaa aatttacttg attttatttt
     1741 aaaaacttat ttgcataatg aaatttacac tttcgcatcc ttaagtgcta aagatttttt
     1801 cttaaaaaat ggttttgaac ttataaggga aaacaaggtt atcaaagagg gacaaaattt
     1861 aaaaaaaatt ttaatgaaaa aagatgtgat ttataaaaac tagaagttaa gataagcaaa
     1921 aataatggat taaaagatat aaaaatcatt tttttctatc ttagataaat gaatttatct
     1981 aagatagaaa aaattacaaa aatagctaga tgttagaaaa tagctccgtg tttttcataa
     2041 tttgttattt ttgtagcagt gttattttca tccacaaaaa caacttttgg tttaaatgtt
     2101 tttgcttctt cttcattaaa atcagcataa gacatgatga tcaccttatc tcccacttct
     2161 gcaagacgag ccgcagcacc atttaagcat acaactcctt cttcttgcgt ggctatggta
     2221 taggtttcaa atctagcgcc attattgaca ttgactactt ggactttttc gtattctaaa
     2281 attccactcg cttgcaataa tttttcatct atacttatac ttcctatata atcaagccta
     2341 gcttctgtta cgcttgcgcg atgtattttt gatttgagta aagtgatatt cattttaatc
     2401 cttgtactaa aaaattatca atgagtcttg tttttccaac aaaagcagcc accgctccta
     2461 aaacattatc agtgatattt tcgatatttt ccatggtgtt aaaatcgact aattctatat
     2521 aatcgatttt gattagtttt tctttttcta aaatatcttt catagcttgg atgatcttag
     2581 aagtattttt ttctccctct cggactaatt tttcagccaa aaaaatgctt tgagatatag
     2641 ctagtgacgc ttttctttct tctttgctaa gatatacatt tctagagctt ttagctaagc
     2701 catcttcttc tctaatgata ggacaaattt gaatttttaa atcaaaattt aaatcatcaa
     2761 ccatatgcct aacgactacg cattgctgcg cgtctttttg ccccatatag actatatcag
     2821 ggtttaggat attaaaaaat ttagttaaaa ccgtgcaaac gcctctaaaa tgccccggtc
     2881 ttttagcccc gcaaagttta tcagtgatcg tattcatatc tacataggtg ctaaaattct
     2941 taagatacat ttgagttgca tcggggataa aaaccatatc aacgccatta tcttgacaca
     3001 ttttaatgtc gcgttctaaa tctcttggat aactagaaaa atcttcatta ggcccaaatt
     3061 gcataggatt tacaaagata cttactataa ccttatcttg tgttttggca tgtttgacta
     3121 aacttaaatg tccatcgtgt aaaaaaccca tggttggaac atagcctata ctaagttgat
     3181 gtgatttcca atcttttaca atttgttttg cttctttgac agaagtaatg acttgcatat
     3241 ttgtatcctt agtataattt atctaataat tcatcatcta aataatcaaa gctgtgctct
     3301 tgggaaggaa aaataccgct tttaacttca tctctatatt tttcaactcc tacttgagga
     3361 tcaattttat caaaatgctt tacaaatttt gctttaaaat ctttatttaa acccaaaaga
     3421 tcgtgataaa ctaaaacttg tccatcgcag tatttgcctg aacctatgcc gattgttgga
     3481 atttctaaaa tagagcttat tttttgtgct agttttacag gcacacattc taaaaccaac
     3541 atacaagcac ccgcatcttg cacagctttt gcatcatcta taattttttg ggctgattgt
     3601 aaatctttac cttgaaccct atagccacct agcatattta cagcttgtgg ggttagtcct
     3661 aggtgagcaa cgacgggtat tcctgattgg gaaatcaatt taatcttact tgcgatttct
     3721 ataccccctt ccacttttac cccatttgcg tggctttctt tgataaatct tgaggcattt
     3781 aagatagcgt cacgatctga actttgataa gacataaaag gcatatcagc aagtacgaaa
     3841 gactttttag ctccgcgaga aacagctttg gtaaaaatca acatttcatc catagtaaca
     3901 cttaaagtat cttgcatacc aagtaccgtc atggctaatg aatctccaac caatataata
     3961 tctatatcgc tattgtctaa aattcttgca ctatgataat catacgcact taccatggtt
     4021 attttttcat ttttggcctt tttttccaaa aaactaatca tactttttct cattttgcat
     4081 acctcaattt ttagctataa aataataagc aaaaaactag catataattt ttcataaata
     4141 gtaaatgaat gataaagtaa gttatattta atcgatggat tgctttaatg gttacaattt
     4201 tagaaaattt cagttcatgt taaaggatat ttaaagaaaa taaagcttta aaaagtattt
     4261 tgtttaaaat tatttaaata gaaagatatt ttatgaaaaa aataacttta tttttacttt
     4321 tcttaaattt agtgtttggg caagataaga tattaaataa ttggtttaaa gagtataata
     4381 caagcggcac ttttgttttt tatgatggaa aaacttgggc gagtaacgac ttttcaaggg
     4441 ctatggagac tttctctccc gcttccactt ttaaaatttt taatgctcta attgcacttg
     4501 atagtggtgt gataaaaact aaaaaagaaa ttttttatca ctatagaggt gaaaaagtat
     4561 ttttatcttc ttgggcgcaa gatatgaatt taagttcagc tataaaatat tctaatgttc
     4621 ttgcttttaa agaagtggca agaagaattg gtatcaaaac tatgcaagaa tatttaaaca
     4681 agcttcatta tggtaatgct aaaatttcca agatcgatac tttttggctt gacaactcac
     4741 taaaaataag cgctaaagaa caagcaattt tgctttttag actttcacaa aatagcttac
     4801 ctttttctca agaagcaatg aatagtgtta aggaaatgat ttatttaaaa aatatggaaa
     4861 atttagagct ttttggaaaa acaggtttta atgatgagca aaaaattgct tggattgtag
     4921 gttttgtgta tttaaaagat gaaaataaat ataaggcttt cgcgctaaat ttagatattg
     4981 ataaatttga agatttatat aaaagagaaa aaattttaga aaaatattta gatgaacttg
     5041 taaaaaaagt taaaaatgat ggctagtgag tatttcgtaa aatgcaaaaa tacttaattg
     5101 tatgatttgc gtacacttaa agtactcatt aaaaaattaa atttttgctc ttatttatca
     5161 agttttccta cgatgatagg gttaaaggct tttatggata gcaaaagcgt atcgccgatt
     5221 tttacatctt gataagcttt tagaaattcc tcttcactaa gagtgatttt aataatatct
     5281 tgatttaaaa gcaaggttaa aaccactaaa atatcacttt ttttaatttc tagcaaagtt
     5341 gcacttaagc gtaattttgc gctgatattt gaatgagtaa aaaattcatt tttaggaaaa
     5401 tctttaataa tttttccgtt tttaagctct aaaattctat gacttaactt ataaatttca
     5461 gctagatcat gacttaccaa taaagtactt attttaaaat actctaaaat cttggttaat
     5521 tcatcttgta aattggcacg cattttaaaa tccaaagcac tcaaaggttc atctaaaagc
     5581 aagatttttg gttctcttgc taaagctctt gctaaagcta ctctttgtgc ctgcccccca
     5641 cttaaatgtt taggataaat tttagctaaa ttttcaagct tcattaaggc taaaagctcg
     5701 ctaacctttg ctttagaact agcggcatag gcgatgtttt cttttatatt catatttgga
     5761 aaaagcgcat aatcttgaaa aacaaaacca atttttcttt tttgtaaagc taaactaaaa
     5821 ttttttgaag aatcaaacca aagttcatta tctacttcta tacgccccaa tttaggcttt
     5881 ataagtcccg ctatgatttt taaaagagtg gtttttcctg ctccactttc gccaaaaagt
     5941 gcagtaattt ttcctgattc tatatctttt ttaaaattta aatccagtct tcctttagcg
     6001 gtattcatag gatgattgat atcaattctt atcattgaaa actcattttt ttattgataa
     6061 aataaagact aaaaagtact aaaaaagaaa aaataaacaa tataaaagca tattgatggg
     6121 ctaagctata gtttaagatt tcaagttcat cataaatagc tatactagcc actaaagttt
     6181 caccttgttt atgtcctcct atcatcatca cgactccaaa ttcacccaca gtatgggcaa
     6241 aactcatcgc acaagcacta aaaattcctg ctttagaatt aggtaaaatc actctaaaaa
     6301 gagtataaat tttactttta cctaaactat aagaagcatc gagcaaattt ggattgatcg
     6361 atgaaaaggc actttgcaaa ggatttacca taaaaggcaa agaaaaaatc aaagaagcaa
     6421 aaacaagacc ttcaaaacta aaaaccaaag aaagattaaa atattctttt aaaacttgcc
     6481 ctaaaaaact attagccgaa aaagttacaa gcaaataaaa tcccaaaaca ctaggaggta
     6541 aaatcaaagg caaggaaata aagctttgaa ggattgtttt aaaaggaaaa cgcacaaaac
     6601 ttaacaaata agctaaaaaa acaccgataa aaaaaaggat aaaagtcgtg ataaaagcaa
     6661 gtttaaaagt aagataaagg gtttgtaaaa aagctggatc aagcactatg actccttaat
     6721 acaatatcat ttgcttttac aaaacaaagc cattcttgat tttcacaaat ttcaagttct
     6781 aaagcttttt ctttggtgat aatactagaa agttcattac ctttaaaatc aaaaaatacc
     6841 tgatataaaa gtttgccttt tttaattttt gtaattttag ctaaaaaaga attttcaaca
     6901 cttaaaagag ttttgcttgc gctaaaacaa agctcatgct ctttaaaaag aagttctaca
     6961 ctcacaccaa tttttaaatt ttctaaagat tttaattcaa gcattaaaac actaaaaatc
     7021 acttctttag aaagtatttt aacaataact atatcctctt gatttaaaag ctcacaaatt
     7081 tgtcctttta taaggttcat ggtgtgctaa atccgtattt tttaaaaatt tcttttgctt
     7141 ttgaagagcc aataaattcg ttaaattcaa aggctaattt tttatcctta gcgtattttg
     7201 tgatgacata actttgctct aaagggctaa aatactttgc atcaattata acagccttac
     7261 ccttaggatg attgatagaa gaaactaaag aataagccac tatagctata tctgaatttt
     7321 tgctatctac atgtaaaaca ggcactgaga tattttcgcc taaaacgatt ttatccttaa
     7381 gaagctcatt taaacccaaa ttttcaagca cttctttagc tgctactcca taaggagcta
     7441 ctttaggatt ggctatgctt agatgcgtga ttttgtttgc cttttctttt aaattttcaa
     7501 cgcctccttg gagtaaattt tcatccaagc tatacaaagc caaaactccc aaaacataaa
     7561 cttttggttt tattaaagca tttttatcat cataaatagc cttagcatat ttagtatccg
     7621 ctgaaaaaaa gagatcaaat tctcttcctt gttttaaaag ctcataatat tttccagaag
     7681 caccaaaaac caattctatt ttatcttctg gatgtgtttt caaaaactca tctttaactt
     7741 cactcatcgc ctttgaagct gaagaagcta caaaaatact taaattttgc gcatttaaac
     7801 acgaaacaaa aagcaaaatc ccaaaaaata ctacaaactt tttcatttag ttttccttgt
     7861 gtaaaaattt aatttttgga ttataacaca aaaaattcat tttatatcat ttttgcataa
     7921 aataaataca ggatgataag tgagtttgtt ttgaaatttt tcttcaaatt cttttaaaaa
     7981 acctttattt aaaggataaa atcctaaaga atttactccg cttaatttta aatgtctaaa
     8041 aacatctaaa gcattatcaa agcttaattt tatgagttct tgagtaattt ttacttcatt
     8101 aaaatagact ttaaaaattt gctctaattc atttaagcta aaataattta aaccaaaacc
     8161 cgtgctttgc ttgatttctt ttaaattttg ctctgcaaaa gtagaaagaa gtaaaatccc
     8221 attttgattt agcatatctc taagacttgg tataatgcgt tttaaatcaa gccattgcaa
     8281 agttgcattt gaaacaataa gatcaaattt ctctttactt aaatcctgtt ttgcaatttc
     8341 gttcatatca aaaattaaaa tactagaatt ttctttaaaa tctaaaatat cgttttttaa
     8401 atactcatca aaagtaataa aattttgaag ttttttgctc aattcacccc tgccacaacc
     8461 aaattcaaat actttttcaa aatgtgaaat tcttaaattt tttaaaattt cacaaagttt
     8521 taaacccata aaatcttgca cttttgcatg tttttcataa tcttttgctt ttaaaaaatt
     8581 caaagctcat cccaagtttt aaaatgaaaa aaagcaaaat gcggttcatt taaaaaaata
     8641 agttttgaaa aagcattttt taaagcattt ggtggaaaaa tttcatcttt tttacttgaa
     8701 taaaccttat cccaaagcaa attttcttct tgttttacta aagcaaagtc aaaaagtttt
     8761 tcaagctcta tttttaaagc tttttcatct ttaaaaataa aatctttagt taaatttttg
     8821 cgttctttaa ataaagcttc tttgaaattt tctaatttga aattttgcaa ggtttttcta
     8881 aaaattgcag gatgaattcc ttttgattta tctatgccta aatttgtgcc atttatggct
     8941 attttttgtt taaaattaag ctcttttaaa agtctatttg ccacacaaac ccccatagaa
     9001 aaagcgatta aaaaaagttc atcaaaagct ttgaaatcaa aatttaaatc aaaattttca
     9061 taatcataaa ataaaatcac atttttatcg ctttttaaat gcgaaaaatg actagaatgt
     9121 gaagcaaatc ccccaaatac cactataagt ttttttgaat caggattttt acataaaaat
     9181 tcatatttca taaaagctct attatccttt caagttcttc tgtgttaagt cctgcgtgca
     9241 aagaaaaacg aattctggct gtattttttg gcacggtagg ttctttgatc gcaggagcaa
     9301 aaaaaccagc tttttgaagt ttttgtgaaa tttctaaggc ttttttattt tcacctaaaa
     9361 gcaagcaaat aatataagca tcgcctaaaa cgatgtgatt tttttcttgc aatttacttt
     9421 taaaaaaagt gcttaaaagc tctaattttt ctctttcttt cttaaaataa ggcatttttt
     9481 taaaaataaa ttgcgtccaa gctacattaa taggtggcaa ggctgtagaa taaataaaag
     9541 ctctagcctt gttgatgaaa aatttcttat atttttcatc acatattata caagcaccca
     9601 tggaagcaag ggcttttcca aaggtaaaaa ccaaaaaatc cacttcattt tctaaggcta
     9661 gttttttaac aagccccaaa ccctcttcat caaaacaacc cacgctgtgt gcttcatcta
     9721 tataaagctt aattttatca taacgccttt taagctcaca cagagtttta aaatcgctaa
     9781 aatctccatc catactaaac aaagcttcgc ttaaaacgat gatattttca taattttcat
     9841 aatgtttttg gattaaactc tctaaatgat tcatatcttt atgatgaaaa cgaaaaaaat
     9901 cagccctgcc aagtcttaag ccatcaatca tacttgcatg aataaattta tcggttagaa
     9961 aaagcgtctt agaaacgcta gaaagtgctg ctatacaaga gatatttaga tgatagccac
    10021 tattaaaatg taaaatttcc ttatctttaa atttagtctt taaaaaactt tctaattttt
    10081 cataaatttc aaaatttcca ctcaaacttc ttgaactcga acttgaaaaa aacaaatctt
    10141 gttcttttag ggtgtttaaa aactcagctt ttaactcttt ggaagacgcc aaataaagat
    10201 aatcatttcc tactaaattt aaaagtttgt gatcttgctt ataaacaaat ttattttcat
    10261 gttttaaagg tgttagagtt cttagattgt gattttgctc tagatcttgc aaaatttttt
    10321 caagcttcat ttttttcctg taaatttaaa aatttaaagt attattttgc caaaatattt
    10381 ttaaaaaaga agttataatg caaaatcaaa tcttaaaaaa tctcgattta aaacacattt
    10441 ggcacccttg cacacaaatg aaagatcacg aaaccctacc tttaattcct ataaaaaaag
    10501 caaaaggtgt atggctttat gattttgatg ataaagctta tatggattgt gtgagttctt
    10561 ggtgggtcaa tctttttggt cattgtaatg aaaaaatcgc aaatgccatt aaaaaacaag
    10621 ttgatgagct agagcatgtg atcttagcag gctttacaca tgagcccatt atcaagcttt
    10681 ctgcaagact ttgcgaaaaa gtaggcagga attttaacaa atgtttttat gcagataatg
    10741 gatcaagtgc tattgaagta gcacttaaaa tgagttttca ttatcattta aataagggag
    10801 tgaaaaaaag taaattttta tctttaagca attcttatca tggtgaaacc ttaggagcct
    10861 taagtgtggg cgatgtagcg ctttataaag atacttacaa agccttgctt ttagagtgtt
    10921 taagcacgcc tgtgccacaa ggcaaagact acactaaaga gcttgaaatt ttaaaagata
    10981 ttttagaaaa aaatgcaagt gaaatttgtg cttttatact tgaacccttg gtacaatgtg
    11041 caggaaatat gcatatgtat gaagcaaggt ttattgatga ggccataaag ctttgccata
    11101 aatttggagt gcaagtgatt tttgatgaaa ttgcagtggg ctttggacgc acaggaactt
    11161 tgtttgcctt acatcaatgc aaacaaagcc ccgattttat ctgcctttca aaagggataa
    11221 cgggtggatt tatgccactt tctgtagtgc ttacaagaga tgaaatttat aatgcttttt
    11281 atgatactta tgaaagccaa aaggcttttt tacattctca tagctatacg ggaaatacct
    11341 tagcttgcgc ggcagcaaat gcggttttag atatctttga ggatgaaaat attttagtaa
    11401 aaaatcaaat tttaagcgag tttatcaaaa aagaattttc aagacttgaa aaatttgact
    11461 ttttgggtaa ttttagaact tgcgggatga tcagtgcttt tgatatttta agcaccaagt
    11521 ataaacgcgt aggacttttt gtatttcaaa aagccttaga aaaaggtttg cttttaagac
    11581 ctttagcaaa tacgatttat tttatgcctc cttacatcat cacaaaagaa caaatcgttt
    11641 atgtactaga gagtttagag cagattttta aggaatttta agttgtaaaa tttcttgcat
    11701 ttgctcttta aaatctttat ttaaaatgct attttcatca aaaaaatcaa gattgattat
    11761 aggaattttt gcataatttt ttataaaatc atcttgtaag atatcttttt tacccatcat
    11821 tacaagggct aaaagattga tatttctttg ctttaaagct tcaatgctaa gcaagatatg
    11881 attaatgctt ccaagatagt attttgctac caaaatcgta gggtgtttga aaatattcac
    11941 aaaatcaatc atagtgtaat tttcatccat aggagaaaaa agcccacccg caagctcaat
    12001 aagtaggttt ttgctttttg gtaaaatgat atctaaggct ttataatcaa gcttttcttt
    12061 gatttttcca agatgaggag aagctggagt ttgcaaaaaa ataccttctt taaaaatctt
    12121 tgtttttggg ctaaattttg caataaactc actatctgtt ggagttcctg cttgaatgag
    12181 tttaaaataa tcatagttaa aattcgcaca aaaagctgca ctaaaatgtg tttttcctac
    12241 atcagtatgt attccactta cataaatttg cacaaaaaat cctcaagaaa gaaattttaa
    12301 acccgctgta caagtaataa tcacagcgat taaaaaaagt ttcaaaaaac ttttactttc
    12361 tttataaaaa agcactccta tcattacccc accagcggtt ccagctcctg tccatatagc
    12421 ataagcaacg ctcatagcga tattttgcat acttaagctt aaaaaagtaa aagaaaatcc
    12481 aaaacacact atcaaagcta aaaggtaaag cttgttttta gtgcttacaa gttctttcat
    12541 gatcaccacg ccaaaaattt cacaggcagt agctaaaaac aaataaaacc attccatagt
    12601 ttaagcttcc ttgcttaccc atttaagggc tataatactt aaaagtaaaa ttgctataag
    12661 cacaagttta attatagaaa cagcttcgtt aaaaataaac atttcattta aaaccacccc
    12721 aatagtgcca atgcctacaa aaacactata agtaatactt acttcaagtc tttcgcaagc
    12781 ttttaaaaag caagtaaaag aaatacaaac cccaatggct gttaaaatat actgccaaat
    12841 ttctgtagaa tatttaagtc cacttaccca aaagcactct ataattccac ctaagattat
    12901 taaaaaccaa gctatattaa tattgaattt ttcattcaca tgaagcctta aattaacata
    12961 atatttgtaa aacaaattat atcttaaaga aattaaaaga agctataaat ttacttttcc
    13021 ataagccaaa attagatata atcaaagctc attttttaag aaaggataaa agatgttaga
    13081 aggtatcgtt agagagagta tcggtagaaa agctgctaaa gctttaaaaa gagatggtta
    13141 tctaattgca aacatctatg gaaaaggatt agaaaacatc aatgccgctt ttaaagtaaa
    13201 tgagtttatt aaggaagttc gtaaaaaaac tactttaatt tttgatgtaa aagtaggttc
    13261 tcaaacttta agcgttgtag ttgtggatta tcaaaaagat cctgtaactg cagaacttaa
    13321 acatgtggat ttaaaagttg cgcaaaaagg tgtgatttct aaatacatgg ttccagttaa
    13381 aatcacagga acagctatag gtcttaaaaa taaaggtgtt ttaattcaat caaaaagaag
    13441 attaaaagta aaatgtgcag ctgaaaattt accaaatttc ttcgaacttg atgtaagtaa
    13501 acttgatgtg ggtgatgctt tacttgttcg tgatattgta gttcctgcgg gagtaactat
    13561 gattgatgct gatagagtag cggttgtagg tgtagaaaaa gctagatgat tttagtcgta
    13621 gggcttggca atataggcgt agagtatgaa aatacccgtc ataatgtcgg ttttatgcta
    13681 attgacttac ttttaaaaga aagcaatttt acaaatctta caaactctaa atttaaagga
    13741 gagcttttta aaataggttc ttctttactt cttcttaaac ctagtactta tatgaataat
    13801 tcaggactta gcgtaaaagc agtgaatgat ttttataaat gcgaaagaat gatagttatc
    13861 catgatgata tagatataaa tttaggagcc ttgcgcttta aaaaaggcgg ttcaagtggt
    13921 ggacataatg ggcttaaaag catagatact ttatgtggaa atgactatga aagagtgcgt
    13981 ataggagtgg gaaagggtga aaatgtgatt tcccatgttt taggtaaatt taaatccgaa
    14041 gaagaaataa ctttaagcaa agttttagag catgcaaaaa aagctttgct tgagcttatt
    14101 gaaaatgatg atttgtctgc tatatcatcc aaatacagcc taaaggctta agatgtggat
    14161 attttttcgt tttatttcag ggatttattt aaaaaatttt tttattatat ttttttcttt
    14221 acttggtttt tattgcggta ttgatttgct cttaaatttt aaagatctac caaaagccgc
    14281 aaatcttgat ttgctttatg ttatgttttt atctttttcg gcagtgcctt atgtattacc
    14341 catttctttg atttttgctt tggtagtttc tttgatttct atgatcagag caaatgaatt
    14401 tgtaagtctt tatgcgttag gactgagtag aaattatgtt attttatttc cttttttatg
    14461 ggctttattt ttttgttgta tttatatagg attgaatttt acttcttttg cttatgcaaa
    14521 tgattataag agaaatattt tgaaaaatgg cactattatg aatcaaagtg gagaagtgtt
    14581 tttgaaattt aacaataatt ttgtttatat ttcaaagata aacaatggac aaaatagtgc
    14641 tcaaaatata aaaattttta atattaatga tttaaattta agctcttttg caagtgctaa
    14701 aaatgcccat tttgaaggtg aaagctggat tttgcgagat ggtaatatta cattattacc
    14761 taaaaattat gaacttgcta atgatggttt aaagatacaa gatttctccg agcttaaatc
    14821 acttgagggt tttaaaccaa agattataga aggggttgct agtaatagtg attattcaat
    14881 atctgacgca cttgaaagtt ttgagctttt taaggcgcaa aatgtcaata cagatactct
    14941 taaaatcaat ctttataaat ttgtttttac tccttttttt gcaccatttt taatgcttat
    15001 tatgtattat ttttttcctg taatagcaag attttttaat cttgcttttg taacttttat
    15061 agcttttgta gtgactttga tgatttgggg agtcttgttt ttgcttacta gattaagcga
    15121 aaatagtgtg attgcaagtg aaattggcat tgtagtgcct attataattt tgggttgttt
    15181 aagtgcttat atgtattata agcatcgata aattaagctt tgtgtagtaa aattataaaa
    15241 attaaaggtt aaatatggat tataaacaat taaagcaaga atttaatact cctttttata
    15301 tttacaattt tgatttcata aaagagcgtt ttttaaatct caaagaggct tttaaggcaa
    15361 gaaaatctca aattttttac gctgtaaaag ccaattcaaa tttaagtttg ttgcaaatgc
    15421 ttgcaaattt agatagtgga tttgattgtg taagtatagg cgaggtaaag cgtgccttaa
    15481 aagcaggagc aaaagcttat aagattattt ttagtggagt aggaaaaacc aaagaagagt
    15541 taagacaagc tttagaatat gatattttat atattaacct tgaaagcgaa gctgaaatga
    15601 tgcttttaga aagtgtggct aaagaactta atctaaaggc aagaatcagt attcgtgtta
    15661 atccaaatgt tgatgcaaaa actcatcctt atatttctac aggattaaat gaaaataaat
    15721 ttggtgttga aattgatata gcaagaaaaa tgtatcttta tgcaaaaaat tcatcttttt
    15781 tagagcctgt tggagtgcat tttcatatag gttcgcaact tttagatatt tctcccattc
    15841 atgaagcagc agccattgtt gcaaaacttg taagagagtt aaaagccttg caaatcgatc
    15901 ttaaattttt tgatataggc ggtggtttgg gtgtggctta tgaaaaaaat gagtgcgaac
    15961 ctgatcttta tgattatgca caaggtatat tagcacaact tcatgggctt gatttaacta
    16021 taggaatgga gcctggaagg tatctagttg ctaaaagtgg agaatttgtt tgttcagtgc
    16081 tttatgaaaa acaaaataaa accaagcgtt ttgttgtagt agatggagcg atgaatgatc
    16141 ttatacgccc aagtttatac gaggcttatc atgaaataat cttaccttat aatcaaggcg
    16201 aagagagttt atgtgatgtt gtaggtggaa tttgtgagag tggggacttt tttgctaaag
    16261 caaggtcttt gcctagcact caaagtgatg atataatggt tattaaaaat actggagctt
    16321 atggttttag catgagtagt aattacaata ctcgtaataa agtttgcgaa ttagcccttg
    16381 aagaaggaca ggtaagattg atccgtcaaa gagaaaattt tgaagatcaa atcgctttag
    16441 aagagaaatt tttaaaggct taaaatgttt tttttagatg ttcaagggac tttaatttct
    16501 gatcatgata aatctttaat ccatggtgct aaagaactga tcgatttttt aaatgcaaaa
    16561 aatcttcctt atcttatcat cactaacaat acaaaaaaac ttgatttttt agaaaaatta
    16621 cagcaaaaag gattggttat aaaagaaaat gcttatattg atcctttcag cgttttaaaa
    16681 caccttttaa gaccttgtaa agttgcggct tttggtgcag atgagtttgt aaaaagtctt
    16741 gaaaatcttg gttttgagct cgattttgta aatcctagtg ctgtgcttgt ggctagttat
    16801 gatgatttta aatttaaaga ttttgccact atgatagaat tggctagaag agaagttaga
    16861 tttatagcta tgcacgaaac tagtatttat aaaaaagatg gtaggcctta tcctggtgta
    16921 ggtagcatta tggctatgct taaaaatgct attgattttg aatacgaggt tgtgggtaag
    16981 cctagcattg ctttttataa agaagcttta aatttaataa gaagacaaaa ttcaaaaatt
    17041 gattttgaag atattaaaat cattagtgat gattttaggg gtgacttgct taaggcaaaa
    17101 gaacttggca tgaaaacctt gctagtttta agcggcaaga taagcgacac aaaagggctt
    17161 gatacggatt tgcttgatgg agtttatcct agtgtttttg agtttttaaa ggatctaaaa
    17221 tgccaaattt agaagaattt agaaataaaa tcgatgcggt tgatgataaa attttagatc
    17281 ttttaaatga aagaatgact tatgttaaaa gtataggtga gcttaagcaa agtagtgggg
    17341 gaagtattta tcgtcctgag cgtgaaagag ccattatcaa tcgtttaaaa aatgcaaatt
    17401 taggactttt agatcaaaat gccatagagg caatttatca agaaattttt gcagtttcaa
    17461 gaaatttaga aatgcctcaa actatagctt atttagggcc tgaaggaact tatacacatc
    17521 aagcagcaag aagtcgtttt ggtgcgatga gtcgttatat agccttggct aatatcgaag
    17581 atgtttttaa agagttaagc aacaaagaag caaaatatgg tgttgtacct atagaaaata
    17641 ataccgaagg tgcagtgggc attactttag attgtctagg taagtataat gagcttaaaa
    17701 tttttggcga aatttatatg gatattcatc attcttttgt aggaattaat gaaaatttaa
    17761 aagaaatcaa acgcatttat tcgcatccgc aaggttataa tcaatgtcgt aaatttttag
    17821 aaagtcatga acttagtgct atagaatttg ttccttcaaa atctacagct aatgcagctt
    17881 acctagcttc gcaagataaa tatgcggcag caatttgttc tagaatagcg gctaagcttt
    17941 ataatgtgcc tgtacttttt gataaaatag aagataatgc agccaataaa acaagatttt
    18001 taattttaag cgatattaaa aatcctaaaa tgccaaattg taaaacttct attttagcac
    18061 acacagcaca taaacctggg ggacttagct ttttattaga gcagtttaaa aaagaaaata
    18121 tcaatcttac taagcttgaa tctcgccctg taaaatcaaa agaattttta cacagttttt
    18181 atatagattt tgaagggcat attgatgatg aaaatgtaaa aaaagcctta aaagatatac
    18241 aagagattgt ttggcttgga tcttatttat caggagaaaa agatgaaatt taatgaattt
    18301 ttaaataatt taagcaatta tgaacccggc aaagatatag aagttattgc taaagaatat
    18361 ggcgttaaag aagtgataaa attagcaagc aatgaaaatc cttttggcac gccaccaaaa
    18421 gctatagaat gtttaagaca aaatgcaaac aaagcccatc tttaccctga tgatagtatg
    18481 atagaactta aaagcacatt ggctcaaaaa tacaaagttc aaaatgaaaa tatcattatc
    18541 ggtgcaggca gtgatcaagt gattgaattt gctatacatt ctaagttaaa ttctaaaaat
    18601 gcttttttgc aagctggagt tacttttgct atgtatgaaa tttatgccaa acaatgtggt
    18661 gcaaagtgtt ataaaactca aagtattact cataatttag atgagtttaa aaaactttat
    18721 gaaacgcaca aagatgaaat taaacttatt tttttatgct taccaaacaa tcctttaggc
    18781 gagtgtttgg atgcaagtga ggcgaccgag tttattaaag gtgtaaatga ggattgttta
    18841 gttgtgattg atgcagctta taatgaattt gcaagtttta aagatagcaa aaaacattta
    18901 gaaccttgtg aattgattaa agaatttgac aatgtgcttt atttgggaac tttttctaaa
    18961 ctttatggat taggaggctt acgcattggt tatggcatag ctaatgctaa tattattagt
    19021 gcattttaca agcttcgtgc tccttttaat gtgagcaatc ttgctttaaa agcagcagtt
    19081 gcagcaatgg atgatgatga atttactgaa aaaactttag agaataattt ttctcaaatg
    19141 gagctttata aagaatttgc taaaaaacat aatatcaaaa ttatcgatag ttatacaaat
    19201 ttcatcactt atttttttga tgaaaaaaat agtacagatt tgtctgaaaa attgcttaaa
    19261 aagggtataa taataagaaa tttaaaaagc tatggtttaa atgctatacg cattactata
    19321 ggaacatctt atgaaaatga aaaatttttt acagaatttg ataagatttt aagatagata
    19381 aatcaaataa aaatatgtaa aattcgctaa actaagggat gagaattaat ggattttaaa
    19441 aatatgcttc atcaaattgg gcaactttat caaaatttaa ctcgcaagca gcgtatagtg
    19501 attgctgcat ctattatagt tgtggttggg tttttggttt ttttagcttt atttcgtgga
    19561 agtggtagta atgcaaataa tggatatgca gttttagttg aaaatgtaag cccaagttct
    19621 tctgctgcaa ttgtagctaa acttgaacaa aataatattc cctataaatt agaaagtgaa
    19681 aataaaattt tagttccaca agatcaggtt tatcgtcaaa gaatgtttat tgcaagcgaa
    19741 ggtcttataa aagatagtcg cgtgggtttt gaagcttttg atactcaagc ttttggagct
    19801 acaaatgaag agcaaaaggt aaaataccaa agagccatag aaggcgaact tgcaagaact
    19861 attgagactt tagaacctat tcgtagcgct gttgtacaca tagcatttcc taaagatagt
    19921 gtttttactg aaaggcaaat tccgcctaca gcttcagttg ttgttaatgt tcgcgaaggc
    19981 ttaaagctta ctagaaaaca aattgatggt ataaaaaata ttgtttcagc ggcagttcca
    20041 aaacttacta aagaaaatgt taagattagt gatcaaagtg gtgtgccttt agatgagcaa
    20101 gaagcatatg aagatgactt ggttcgtgcg caaattaaat ttaaaagtga tcaagaaaaa
    20161 gctttagaag ataagattat agaaaattta gctccttttg caggtggcat ggataaagta
    20221 aaagtgagtg taaatataga ttttgatttt tccaagcaag aatctcaaag tgaaatttat
    20281 gatccaaatc ctatagtacg tagtgagcaa actttaaacg aggaaagaac aggtagaaaa
    20341 gatccagaaa ttcagggtgt tccaggtgct gtttctaata taggtcctgt tgaaggactt
    20401 gacaataagg gtcaaattga cacttataaa aaaaatcaag ttactacaaa taatgaactt
    20461 tctaaaacta tcacaaatac caaaaaacaa tttgcaacag ttttacgcac ttcagcagct
    20521 gttactatag atggaaaata tcaagatgtg gttgatgaaa atggggatgt gaaaagcgaa
    20581 tatgtcccat tgactaaaga agagcttgca agtgttgaga gtatagttaa aaatactatt
    20641 aattttagcg ctactagagg tgatagtgtt gtggtgcaaa atttaccatt tcatcgtgag
    20701 tcgattagag ttgagagtaa agttaaaact ttttacaatc gttttgttga gccatttatt
    20761 ccgccggtta aatactttat tgcagcgatt ttacttttta ttttttacaa aaaagttatt
    20821 gctccattta ctcaaaaaat gcttgaagat gtcgcagcac aagaggaaat gcagcaaggt
    20881 ccaaatgctg ttttagatga tgctgaagat gctttagaga aatttaatgc agcaaggaaa
    20941 aaagttgaag aacaacttgg ttttggggat aacttcaatg aagattctat ccagtatgag
    21001 gttttgcttg aaaaattgcg tggtttggta agtgataaag gtgaggaaat tgcagcactt
    21061 ttgcaaaact taattcaaaa tgatagcgaa tttggcgaaa aggatatgtg atgataaagc
    21121 taagtgaaga acaaaaaatg gtctatgatg atttatcgat gcctgagaag gtagcgatat
    21181 ttcttataca acttggcgaa gatgcaacca cttctgtgtt ttcacatatg gaaattgatg
    21241 taatcacaga aatttcacgt tatattgcta tggctaaaaa tgttgataga tctgtagcta
    21301 ctgcagtttt agaagaattt tacactctgc ttcaatcaaa tcaatatatt aaaagtggtg
    21361 gtttggaata tgctaaagaa atactttttc gtacttttgg accagagatt gcaaataaaa
    21421 ttcttgaaaa actcactaaa agtatggaga ataatcaaaa ttttgcttat ttggcgcaaa
    21481 ttaaaccaca gcaacttgca gactttatta ccaaagagca cccacaaacc atcgctctta
    21541 ttttggcaca catggattct attcatgcgg cagaaacttt agagtatttt agcgatgaat
    21601 taagggctga ggtggttata agaatggcaa atcttggtga tatttctcca agtattatta
    21661 aaagagtttc tgcagtgcta gaaagcaagc ttgaaagtct tacctcttat aaggttgaag
    21721 tgggcggccc aagagcagta gcagaagtgc ttaatcgttt gggtcaaaaa gcaagcaaat
    21781 caaccattac ttatattgaa caaagtgatg aacgcttagc agagactatt aaagagctta
    21841 tgtttacttt cgatgatata caaaaactta gcactcaggc tataagagaa attttaaaag
    21901 tagccgataa gcgtgattta atgataggtt taaaaggtgc aagtgaagag ttaaagcaaa
    21961 aattcttagc caatatgtct acgcgtgcaa gcgaagcttt tcttgaagaa atgggttttt
    22021 tgggtgctgt gcgtgttaaa gatgttgaag atgcacaaag aaaggttgtt gaagtggtgc
    22081 aaaaacttgc agaacaaggt cttgttcaaa caggcgatgc ggatgaaatg atagagtagg
    22141 tgagagatgg ttaatcgtag caatgtaatt tctggtgggg cttctgatca gcatgttgtt
    22201 gaaggatatc gttttaaagt tatttcagaa tttgataatc atacaggtga aaaaaaacat
    22261 actcaaactc cagatgaaga aaatactaat atatctttaa atgacgaaaa accagtcgaa
    22321 gaaaatcaag tcattgcctc tacacaagct gttatggaaa ctcaaattcc aacatttcaa
    22381 ccaagctttg ttgaagattt acttaaaaaa acagatgaaa tgtcaagcaa tattattaaa
    22441 cttcaaatgc aaatagaaag ccaagagaat gaatttaata accgcttaaa ttcagaactt
    22501 gaaaatgcta aagaaaaatt taccaaagag ggttatgaga aagcaaaaga agaatttcaa
    22561 aaggaattga gtgattttaa agataagtat ttaaaaagta tagccaaact tgataatgct
    22621 tgcgaaaatc ttgaaaattt catagaaaaa aatgagaaag aattagcaga tactgctata
    22681 gatatcgcta aagaagtaat cttaaaagaa cttgaactaa attcaagtaa gatagcttat
    22741 gctttggcta aagatttaat cggtgagctt aagggtgcta gtgcaattga gcttaaggtt
    22801 aatgcagagg attatgagta tttaaaagag caatttgatc agaatgctca tattaaaata
    22861 agtcttgatg atgcaattag caaaggaagt gttgttatta taagtgacgc aggcaatata
    22921 gaatccaatc ttaactctcg tctaactaaa attaaaaaaa tggtgaataa tgagtaaaaa
    22981 atttgcccat actcaagaag agttagaaaa gctaagttta aaagaattag aaaatttagc
    23041 agcatctatg cgtgaaaaaa tcatacaagt tgtgagtaaa aatggtgggc atttaagttc
    23101 aaatttgggt gctgtagaac ttagtatagc aatgcatttg gtttttgatg caaaaaaaga
    23161 tccttttatt tttgatgtgt cgcatcagtc ttatacacac aagcttttaa gcggaaaaga
    23221 agaaatattt gatactttaa gacaaatcaa tggtttaagt ggttatacaa aacctagcga
    23281 gggagattat tttgtagcag ggcattctag tacctctatt tctttggcag taggtgcttg
    23341 taaggctatt gctttaaagg gtgaaaagcg tattcctgtt gctttgattg gagatggtgc
    23401 tttaagtgcg ggtatggcct atgaggcttt aaatgaattg ggtgattcta aatttccttg
    23461 cgtaatactt ttaaatgata atgaaatgag tatttcaaaa ccaattggag caatttcaaa
    23521 gtatctttct caggctatgg caacgcagtt ttatcaaagt tttaaaaagc gtattgctaa
    23581 aatgttggat atattgcctg atagtgctac ttatatggcc aagcgttttg aagagagttt
    23641 taaacttatt acccctgggc ttttgtttga agaattaggg cttgaatata tagggcctat
    23701 tgatggacat aatttaggtg aaattatttc tgcattaaaa caagcaaaag ctatgcaaaa
    23761 gccttgtgtg atacatgctc aaaccataaa gggtaaaggc tatgctttag ctgaaggaaa
    23821 acatgctaaa tggcacgggg tgggagcctt tgatatagat agtggagaga gtgttaaaaa
    23881 aagtgatact aaaaaatctg ctactgaaat tttttctaag aatttgcttg atttagcctc
    23941 aaaatatgaa aatattgttg gggttacggc ggctatgcca agtggaacag gtcttgataa
    24001 gcttatagaa aaatatccaa atcgtttttg ggatgtggct attgcagaac agcatgcagt
    24061 aacttctatg gccgctatgg caaaagaagg atttaaacct tttattgcaa tatatagcac
    24121 ctttttgcag cgtgcttatg atcaagtgat ccatgattgt gcgattatga atttaaatgt
    24181 ggtttttgct atggataggg cagggatagt aggcgaagat ggggagacgc atcaaggtgt
    24241 ttttgatctt agttttttag ctcctttgcc aaatttcact cttttagccc caagagatga
    24301 acaaatgatg caaaatataa tggagtatgc ttatttacat caaggaccta ttgctttgcg
    24361 ttatcctaga gggagtttta ttttggataa agaatttaat ccttgtgaga taaaacttgg
    24421 taaggcacaa tggcttgtaa aaaataatag tgaaattgct tttttaggtt atggacaagg
    24481 tgtggcaaaa gcgtggcaag tcttaagagc cttgcaagaa atgaataata atgctaattt
    24541 gattgattta atttttgcta aacctttaga tgaagagctt ttgtgtgagc ttgctaaaaa
    24601 aagtaaaatt tggtttattt ttagtgaaaa tgttaaaatt ggcggtatag aaagtttaat
    24661 taataatttt ttacaaaaat atgatttgca tgtaaaagtt gttagctttg aatatgaaga
    24721 caaatttatt gaacatggaa aaacaagtga ggtggaaaaa aatctagaaa aagatgtcaa
    24781 tagtttgttg acg
//
LOCUS       DAPIWJ010000015        24524 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.015, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000015 DAPIWJ010000000
VERSION     DAPIWJ010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24524)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24524)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24524
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.015"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(61..1098)
                     /locus_tag="RJ259_000458"
     CDS             complement(61..1098)
                     /locus_tag="RJ259_000458"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HDV7366198.1"
                     /translation="MKKLFICCLFIGVCMKKAKSRIAILGTGGTIAGFIDSTIATTGY
                     TAGAIDIDVLIKAVPQIRDLADISWEQIANIDSSNMCDEIWLRLAKKIAKLFAEGIDG
                     VVITHGTDTMEETAYFLNLTIKSDKPVVLVGAMRPSTAISADGPKNLYNAVALVANKE
                     AKNKGVMVAINDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVTKAHT
                     KNAPFDVSKLTSLPKVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKNQKD
                     VLKELLKKGLKVVVSSRVVAGCVAVSDSDEKLGFISAEDLNPQKARVLLILALTKTSD
                     PKKIQEYFLKY"
     gene            complement(1152..2723)
                     /gene="recJ"
                     /locus_tag="RJ259_000459"
     CDS             complement(1152..2723)
                     /gene="recJ"
                     /locus_tag="RJ259_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HDV7366199.1"
                     /translation="MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRI
                     KEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIIN
                     ELDVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDF
                     PEIEICGAQVAWYLIAALKEVCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGI
                     DHINKSKRAAFRAIKHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFN
                     KALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLNWHEGVLGIVASRLA
                     KHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSEN
                     FEQFKNKIKKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFF
                     VLENLCVKNKKLLGKDEKHLKLVLTKENKTIEALFFNFDKEPELNQNISLLGSISKNE
                     FRGMVTPQFVVKEIL"
     gene            complement(2710..4341)
                     /locus_tag="RJ259_000460"
     CDS             complement(2710..4341)
                     /locus_tag="RJ259_000460"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HDV7366200.1"
                     /translation="MKQTKYIFVTGGVLSSLGKGIAAASIATLLKNSGLKVSILKADP
                     YINVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFLDESLSQDNNFTTGRVYQSVIE
                     KERRGEYLGKTIQVIPHIVGEIKDRIKKAGEGKDILIVEIGGTVGDIEGLPFLEAIRA
                     LRLEVGKNNAMNIHLTLVPFIKAAGELKTKPTQHSVGELRRIGISPDMIICRSEKALD
                     RDLKDKIAISCGVEKNCVIESVDAASIYQIPLNFLKQDILSPIAEILDLKNLKPNMEN
                     WDSLVKRVIAPSNEVKIAFVGKYVDLKESYKSLTEAIIHAGAALDTKVELKWVDSEKL
                     ENMESSEVFKDVSGILVAGGFGYRGVEGKIKAIQYARENKIPFLGICLGMQLALVEFA
                     RNVLKLKDANSSEFNEKCQNPVVYLIDEFMDTNGEKQIRTAKTPLGGTMRLGAYKCDI
                     KEKSLLAKVYNEVKSVKERHRHRYEANPKYRADFEKHGLIVSGESKGLIEAVELNCHP
                     FFLAVQFHPEFTSRLEHVNPVICSFIKAAINYEDN"
     gene            4461..5084
                     /locus_tag="RJ259_000461"
     CDS             4461..5084
                     /locus_tag="RJ259_000461"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HDV7366201.1"
                     /translation="MQITLLFHTPLSVCSHATRTCWQSFEKGDCGGEKDKELIDRVGN
                     KFKHASTLEHLNYTFYIQGISRACLQEVARHRHTSPSVKSTRYTLKELRNEAEFKIGD
                     FENASRYLVLCGNEEVDNASIKALENLRTILQKSISLDIAKYCLPESYKTELTLTINA
                     RSLQNFISLRSSKSALWEIRNLANALFEALPQEHKFIFEHCLHKDIE"
     gene            5204..6589
                     /locus_tag="RJ259_000462"
     CDS             5204..6589
                     /locus_tag="RJ259_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HDV7366202.1"
                     /translation="MDKQFFQDFLMLSQAHTITTLAMLCVVFYALKKMRDIKINFSLR
                     MLFALLMGLGFGFALQYLANFPDAKEASNILWYSETKHWFAFVSSVFVAFIKMLVVPL
                     VSICIIKVIIEIDKNIKISSLLGISLFWILFSTAIAATLGIFLGYSFDLGSNFAIYEG
                     NKQIREIQTFSNIILGLIPSNIIAAINKENIIAIVIFSFFIGISAKKISKKEEYEQAF
                     KSFHNFILTFYNIMMNMTATVIRFMPYAVVCMMANVLLSNGFEAIKTAGLFIMLIYIA
                     MLIMFGVHFLLLASQGLNPIKYAKKAFPVWLFAFSSRSSLGTLPMTTSTLQNKFGVNS
                     AIANFVASIGTTTGLNGCAGYFPALAAVFVAFATHTHIDFTFALMIVLVAVIGSLGIA
                     GVPGSATMAASIMLAGIGFGNNFVMLSLILAIDPIIDMARTASNVSGAMTSALCTAKN
                     LKALDKEIYNS"
     gene            complement(6628..8997)
                     /locus_tag="RJ259_000463"
     CDS             complement(6628..8997)
                     /locus_tag="RJ259_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDV7366203.1"
                     /translation="MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQ
                     FRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLREYF
                     EKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIEL
                     PQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIG
                     STPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN
                     DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFM
                     KRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLN
                     YFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELH
                     FDEEQKVVIDGGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYT
                     KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWG
                     SDEHLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKAL
                     TLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKW
                     FEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSL
                     DKASGGYLNEIYQLAWELGVKSTYYLRSESPDSEKVNVADRSIECEGCQ"
     gene            complement(9013..10341)
                     /locus_tag="RJ259_000464"
     CDS             complement(9013..10341)
                     /locus_tag="RJ259_000464"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDV7366204.1"
                     /translation="MVERYSREIMAKKWDMQAKYDAWLKVELAAVKAWNKLGLINDTD
                     CEKILKNAKFDIARIDEIEKTTKHDVIAFLTSVSESLGEESRFVHYAMTSSDCIDTAV
                     ALQIKESLELILEDVSLLLEVIKKRALEHKNTLMVGRSHGIHGEPITFGLVLAIWYDE
                     ILHAKELLEHAKEVISYGKISGAMGNFAHAPLEFEEEVCKNLGLKAAPVSNQVIQRDR
                     YAQVISAIAILASSCEQIAVAIRHFQRTEVYEAEEYFSVGQKGSSAMPHKRNPVLSEN
                     ITGLCRVLRSFVTPALENVALWHERDISHSSVERFILPDAFITADFMLMRLTNLIDKL
                     LVYPENMMKNLNLTGGLVFSGRVLLELPFKGISREEAYKIVQRNAMKVWADLQNGKAA
                     INEKNESLFLLALLSDEDLRKSLSEEDVRKCFDYNYYTKNVDVIFKRTFK"
     gene            10419..11321
                     /locus_tag="RJ259_000465"
     CDS             10419..11321
                     /locus_tag="RJ259_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDV7366205.1"
                     /translation="MAYIKIKLSNNGKKAFQVLMENLKISINEAQKLIDKKRLFCDGI
                     LVEEKNEILNGLVELIVYENNPKGVEIVFENEDFAILEKESGILSHPNGRHCKYSLSD
                     EIWHLWGKEACVAHRLDKETSGLILVAKNKKAQIDLKALFEKKLVQKEYLALANGKIE
                     ENFIIDKAINLAKNYDDVKTRMQICKEGKQAITEFEILEYFPKINATLLLCKPLTGRQ
                     HQIRVHLHYKNHTILGDPLYGLSKEQIESILDEKLTPKERLKLTGALRLCLHSYRLKF
                     QYKNQNFNINSKINIKEIFNNSIK"
     gene            11434..12312
                     /locus_tag="RJ259_000466"
     CDS             11434..12312
                     /locus_tag="RJ259_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HDV7366206.1"
                     /translation="MKFVNFIQGQKPNLGVLNSSGKIVSFDDFGIETNDMNEFIIHFD
                     KFKHKLTDLDSKIAYEIPQENYLAPIIEPRQDIICLGINFLDHAKESAKFKGEKFEER
                     EYPVYFGKRCNQATPPFGDIPLHADVTSQLDYECELAFILSKDAYKIKAKDAKDYIFG
                     YTIINEISARELQKRHKQFYRAKSLEGSTIMGPYITSVDEISYPPKLQLQSYVNDELR
                     QNSNTQLFIFDIAYVLEELSAGMLLKAGSIISMGTPSGVGMGLNPPTFLKSGDKVRCV
                     IENLGELCNKIKNINY"
     gene            12376..13290
                     /locus_tag="RJ259_000467"
     CDS             12376..13290
                     /locus_tag="RJ259_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HDV7366207.1"
                     /translation="MKKIIMILCLSYANIVFAVDMITPIPNSISYDKEKAELGKSLYM
                     DKSLSKDGKVSCNTCHRLDRHGVDGLEFSIGVDNQLDKPFNTPTTFNSVFNFVQFWNG
                     RAKDLTEQAMGPFFNPKEMGLSPELLLQKVNSNENYVKTFKKLYGEVTVENIALAVAE
                     FEKTLITPNSPFDRYLSGDQNAISTQAKKGYEDFKANGCISCHQGQNIGGNMFQKIGI
                     FEEYPNQEDLGRYEITKREADKMVFKVPSLRNIAKTAPYFHDGSIPTLDACVQFMAYY
                     QLGKFLDQETVDNIVAFLESLTGEYHDK"
     gene            13280..15058
                     /locus_tag="RJ259_000468"
     CDS             13280..15058
                     /locus_tag="RJ259_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HDV7366208.1"
                     /translation="MTNKKSSFLIKFIILSTLVLAFILVLLGIIFNNYSSSKDNKELI
                     NIVQQLEISDEKINSVFQNSFNFINYDPSVQAIKKMQENFTKLKTFGIDINKAEEIFN
                     AKLIQLNYFKSANSIAVNSKLYLFELAKNYFEELEQNHETNKNNYKTMSSMLSVLSTE
                     NILQKTTLNQLNNLMKEIKNDTKSENLQLFLKHYNMIVKQISIMQDNSSIYENNSLMK
                     ELKQLNTFTQNTIEQSNLFKFYIALAVFGITLVLFVFFILLTLKKVIMPIHTLEKLSA
                     NLASKEANLHSRLNIDPKSELGQSAQYINSFISTVQNSIIEAIENAKSSHQNSQKLKN
                     NSMMLENSSNSQHEQIQGVKEITHVLDDHINLAGNLAQESIENMQDMHILMDKVELTL
                     SELVNLINENNEKEQNIVANMDNLTQSADNIIEITNSIKDIVDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVGQLADKTSKSLLNINATVNTIVQQINDNKALMDLIHDSMKETS
                     SKTNDLQQELVNSMHKLESSIESTQTMKDKSMEVKDKMLILGTNIDKVNELANSVKDL
                     SCEINNISQNVLNGASKLSEKLSSFQ"
     gene            15164..15331
                     /gene="dba"
                     /locus_tag="RJ259_000469"
     CDS             15164..15331
                     /gene="dba"
                     /locus_tag="RJ259_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein Dba"
                     /protein_id="HDV7366209.1"
                     /translation="MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGH
                     KTGALLTIMNL"
     gene            15343..16869
                     /gene="dsbI"
                     /locus_tag="RJ259_000470"
     CDS             15343..16869
                     /gene="dsbI"
                     /locus_tag="RJ259_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbI"
                     /protein_id="HDV7366210.1"
                     /translation="MNEINKTKNFYTLMCLAGFLIILLPVGIANLIFGYMLGDSPCTL
                     CWGQREAMIFIGVMALFIVRYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGF
                     GLAVFGIHTYFWAEVVFWAVVLLLGVIFAFAPKFNAFEAELNGEKFRKYTKFSFAAVL
                     ISAIIVASNVFQAFVSTGIPPYVGQGDPVRFSLNPKYIIWSKEGWNGLWQNISFLGKR
                     DVKAPDYAFAPASEKLGIKFDNDINNAPFAKINDELKITNEQTINFDKAINTLDYINN
                     EFVASSKWDVAFLDNNFSVKEGFELDPYFSASIDPIIGIIPYMNDKFILMGSNKSFLR
                     FAKNPNASEEDIAKQYADFVKGNDKFKGQGESLGRGRLDTVRAKFNHVASMTTDGNYL
                     YLATVPNNKDAKTFVISKVSLKDRVLSGEFTPKANLKEGKTLGDLYVTSMTFKDGEIY
                     ALSKNHNVIAVIDPVKEEVVKTIAFPSSITNARSIFFKDGKINILSYQDGANKLYTLN
                     "
     gene            complement(16890..17564)
                     /gene="queC"
                     /locus_tag="RJ259_000471"
     CDS             complement(16890..17564)
                     /gene="queC"
                     /locus_tag="RJ259_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HDV7366211.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKE
                     KECFKQICKALKVEKSYILDVSFIKDIGGNALTDKSIDIPKNELCTSDTPPITYVPFR
                     NGIFLSIAGSLAEKENCESIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKAKIVELALKENVPLELTWSCYESEDEACGECDSCLLRLRGFEKAGFKD
                     KIKYKS"
     gene            17641..18867
                     /locus_tag="RJ259_000472"
     CDS             17641..18867
                     /locus_tag="RJ259_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HDV7366212.1"
                     /translation="MINIKLIEHIFKSASISRWNDYPRMANLVELDKQAHKFIIAYFI
                     AKMEKDVDMRVIIEGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIE
                     DIEDGEFLKRFEAYLNGNAYAKERLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNK
                     VEEELEDYYELIGARKIALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVA
                     ILGYFYSLKIKACDKRLENNFYCALFHDLPESLTRDIISPVKYGIDGLHDIINDYEMK
                     LINERILPFVPEGLRAEFSYILGIREGRNGESNFVKNEFENRTYKNAKIELCSGSLSS
                     FNENEFGAIDGKALKYCDKIAAYIEAGLSISYGVKSKELESGFLGMHEFFKENPTIDG
                     VNFFEICESLREYFKI"
     gene            18959..19483
                     /locus_tag="RJ259_000473"
     CDS             18959..19483
                     /locus_tag="RJ259_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YagU family protein"
                     /protein_id="HDV7366213.1"
                     /translation="MKKYFQKRYTLAFFIGILAGIFGAIVKWGWEVPFPPRNPNVFWP
                     ADALERVTPPKIFLEQLGLPTDWTYMFSGMQMPLSIFIVHVGFSIIFGVAYCMIAEKW
                     HRITMWQGAVFGFFVYLFAHVIVMPLIAEVPPLSEIPFDEHLSEIFGHIVWLWGMEIV
                     RRDIRNRITKEIEE"
     gene            complement(19495..21171)
                     /gene="ilvD"
                     /locus_tag="RJ259_000474"
     CDS             complement(19495..21171)
                     /gene="ilvD"
                     /locus_tag="RJ259_000474"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HDV7366214.1"
                     /translation="MRSDAIKKGHLRAPNRSLLRACGLKDEDFDKPFIGVANSYIDII
                     PGHYFLNDYAKIIKDEIRKNGCVPFEFNTIGVDDGIAMGHEGMLYSLPSRELIANSIE
                     TVMNAHQLDALICIPNCDKITPGMLMGALRVNVPTIFVSGGPMASGVTKKGEKISLSS
                     VFEAVGAYESKKISEEEFKDIECSACPSGGSCSGMFTANSMNTLCEAMGIALEGNGTI
                     LALSKEREELLRKAARRICEIALDERFKIRNIITQKAVRNAMVVDMAMGGSSNTVLHM
                     LAISREAGVALDIKDLNFISSKVAHIAKIAPSLNSVYMDDIHKAGGVSAVMAEISSRQ
                     GHILELDALTITGESLKERLKNAKIKDENIIRKVDNAYSKVGGLAILFGNLAEQGCVI
                     KTAGIIGERKFKGKAVCFNSQDEAIKGIIKGKVQKGNVCVIRYEGPKGGPGMQEMLSP
                     TSLLMGMGLGADVALITDGRFSGATRGLSVGHISPEAAEGGLIGLLKDGDEIEIDVDA
                     YTIHANVSEEEIAKRKKEFALPQKEVSSRWLRMYQKLVSNASKGAVLDME"
     gene            21331..21978
                     /locus_tag="RJ259_000475"
     CDS             21331..21978
                     /locus_tag="RJ259_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="desulfoferrodoxin FeS4 iron-binding
                     domain-containing protein"
                     /protein_id="HDV7366215.1"
                     /translation="MRQYETYKCQKCGNEVEVQNVGGGKLSCCGEEMKCITTDLTAVN
                     LMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEIVDG
                     KPLEVTTKNLVTAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHEREY
                     LALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYFKREFLG"
     gene            22043..22282
                     /locus_tag="RJ259_000476"
     CDS             22043..22282
                     /locus_tag="RJ259_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HDV7366216.1"
                     /translation="MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAIL
                     EYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITIE"
     gene            22315..22890
                     /locus_tag="RJ259_000477"
     CDS             22315..22890
                     /locus_tag="RJ259_000477"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HDV7366217.1"
                     /translation="MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQL
                     DGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFK
                     TENNFLYDGNTNLGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEF
                     EKNKAYGTKAHKEFIAKFGICKLHRKSFKLL"
     gene            complement(22891..24336)
                     /locus_tag="RJ259_000478"
     CDS             complement(22891..24336)
                     /locus_tag="RJ259_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HDV7366218.1"
                     /translation="MGNARGFLDFKRMDFKKIAPKERILNYKEFTIPLDKKEQEVQGG
                     RCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWNDLVYRSLWKEAYERLDLTNPFPEFT
                     GRVCPAPCEDSCVCAINGVSVSIKNNELSIIENAFKENLVRVNKPKQYNGKKIAVIGS
                     GPAGLACANTLNSLGYKVSVFERSDKIGGLLMYGIPDMKLDKSIVQRRVDLLKKSGIE
                     FKVNENIDSKDKVSKLLKEFDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKT
                     LLKTGKGADMAKGKNVLVIGSGDTSVDCIAVATRQGAKSIVRFERSPKRPLQRSQNNP
                     WPLKADIFTTDYGLEEAIAVYGKDPREYQKMTKKFLGKTHVEGVEANDLKREFKEGKA
                     INVEISNSKKTYKADLVLLAMGFSGCEEAISKNFGVKLDEKNNISTENFQTTHKKIFA
                     CGDARKGQSLVVWAIKDGIECALSLHQNLAK"
     gene            complement(24339..>24524)
                     /locus_tag="RJ259_000479"
     CDS             complement(24339..>24524)
                     /locus_tag="RJ259_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF262 domain-containing protein"
                     /protein_id="HDV7366219.1"
                     /translation="ESKNNKPLKQWVNEKCNGNRKEFLGKHLIPDVDLSLENFNNFIE
                     ERKKIIIDKLKSILNKE"
BASE COUNT         8325 a         4336 c         3534 g         8329 t
ORIGIN      
        1 gattgaaagg cttgacttag ggaagataag ttccctaagt ttagaaatat ttaaaaaatt
       61 ttaatatttt aaaaaatact cttgaatttt tttaggatca cttgtttttg taagtgctaa
      121 tataagcaaa actcttgctt tttgaggatt taaatcttca gcactaataa aacctaattt
      181 ttcatctgaa tcactcacag caacacaacc tgctacaacc cttgaactta caacaacctt
      241 aagccctttt tttaaaagct cttttaaaac atctttttga tttttgtgta tacttcctgc
      301 tccacttcct gcaacaacta tgcccttagt tccatgttca aataaagctt ttgcagcgac
      361 accactacca tcatttgaat agctataaag aatatctact tttggcaaac ttgtgagttt
      421 gcttacatca aaaggagcgt tttttgtgtg agctttagta acattattat agaaaaagac
      481 tttaccatct actatataac ccaaatcccc aaaatcagga gaagagaaag catcaacatt
      541 taaactatga gtttttacta cgcctctagc gcttaaaatt ttatcattta tagctaccat
      601 aacaccctta ttcttagctt ctttattggc aactaatgcc actgcattat aaagattttt
      661 cggaccatcc gcacttatag cagttgatgg acgcatagcg ccaactagaa ctacgggctt
      721 atcactttta atggttaaat ttaaaaaata agcagtttct tccatagtat cagtaccatg
      781 agttatcacc acaccgtcta tcccctcagc aaaaagctta gcaatttttt tagcaagcct
      841 taaccaaatt tcatcacaca tatttgaact atcaatattt gctatttgct cccaactaat
      901 atctgctaaa tctctaattt gcggaactgc tttaattaat acatctatat caatggctcc
      961 ggccgtatat cctgttgtag caatagtgct atcaatgaag cctgctatcg ttccgcctgt
     1021 tcctaaaata gcaatccttg atttagcttt tttcatacat actcctataa aaagacaaca
     1081 tataaataat tttttaatct cttgtatatt aattttttaa tgttattaat gcaaattata
     1141 agtaaaaatt tttataaaat ctctttaaca acaaactgtg gagttaccat tcccctaaat
     1201 tcattcttag aaatacttcc aagcaaagaa atattttgat tcaattctgg ctctttatca
     1261 aaattaaaaa ataaagcttc tatggtttta ttttccttag ttaaaacaag ctttaagtgt
     1321 ttttcatctt tacctagaag ttttttattt tttacacaaa gattttctaa aacaaaaaaa
     1381 ggtcgtggat ttttatgtcc aaaaggttca aaagattcta aaatttcaag catttcaaaa
     1441 tcaatttcgc taggttctaa gattcctaaa atttcatctg tatccaaaaa ttcactttca
     1501 gaaatttgcg aacattcttt tttgatttta tttttaaatt gttcaaaatt ttcagagttt
     1561 aaactgattc cagcagcacc tttatgacca ccataattgc ttaatataga atttgtctta
     1621 gaaattaaag ctaaaatatc aatcttgcca acacttcttg cactgccttt taagtgttct
     1681 tcattttgag aaaatacaaa agcaggttta ttaaaatgtt tagctaaacg acttgccaca
     1741 atccctaaaa caccttcatg ccaatttaaa cccgatacca caatacaaga atcgttttca
     1801 tcgatttgat ttaaactatc ttcaaaaagc tgtttttctt catctttacg actttcatta
     1861 aaactaacaa tttgctctag atattctaaa gctttattaa aatctttagt gtgtaaaaat
     1921 tcataagaaa tacttgcatc atccattctt ccagcactat ttataagcgg agcaattaaa
     1981 aatcctatat tatcaagagc aaatttatcc ttttgataat aatgcttaat agccctaaaa
     2041 gcagcccttt tagatttgtt aatatgatct ataccacgcc ttactaaagc acgatttaaa
     2101 tctctaagtt ccatcatatc tgcaacaatt gcaatcgcca aaagttctaa aaatttacac
     2161 atgtcatatt taagcttgca cacctctttt aaagccgcta tcaaatacca tgcgacttga
     2221 gctccacaaa tttcaatttc tggaaaatca caatcttttt gctttggatt gataatggca
     2281 aaagcatcag gtaaaacatc ttgaggcata tgatgatcag tgataatcaa atctatattt
     2341 ttttctttac agagtttggc tgcttcaaga gcagctattc cattatctac tgttattatt
     2401 aaatttacat caagttcgtt gatgatctca gcatttaatc catatccatc tttaaaacga
     2461 tttggaattc ttataatata atcaaaacct atatcatcga aaaattctgc cataataaca
     2521 caagaaatga ttccatcaac atcataatct cctactatgg cgactttctc atttttttct
     2581 acagcttctt tgatgcgatt agctgcttta tatgcatcct ttaaacagca tggcaaaggc
     2641 agatcacaaa gtttggtatg caaatctttt tcaaagcgtg aagccaaaat ttttttaatt
     2701 tcatttttat taattatctt catagtttat agctgccttg ataaaactgc aaatcacagg
     2761 attaacatgc tcaagtcttg atgtaaattc tggatgaaac tgcacagcca agaaaaaagg
     2821 atgacagtta agctcaactg cttcaatcaa tcctttgctt tcaccactta caatcaaacc
     2881 gtgtttttca aaatctgctc tatattttgg atttgcttca tagcgatgac gatggcgttc
     2941 ttttacactc tttacttcat tataaacctt agccaaaagg gatttttcct tgatatcaca
     3001 tttataagcc cctaaacgca tagttccacc taaaggagtt tttgcagtac gaatttgttt
     3061 ttctccattt gtatccataa attcatcaat caaataaacc acaggatttt ggcatttttc
     3121 attaaattca cttgaatttg catctttaag ttttaataca tttctagcaa attccactaa
     3181 agcaagctgc atacctaaac aaattcctaa aaaaggaatt ttattttctc ttgcgtattg
     3241 aatggctttt atcttacctt ctacaccacg atatccaaat cccccagcaa ccaaaattcc
     3301 actcacatct ttaaatactt cagaactttc catattttca agtttttcac tatctaccca
     3361 ttttaactcc actttagtat ctagggctgc acctgcgtgt ataatagctt cagtaaggct
     3421 tttataactt tcttttaaat ccacatattt gcctacaaaa gcgattttaa cttcattgct
     3481 tggagctata actcttttta ccaaagagtc ccaattttcc atattaggtt ttaaattttt
     3541 caaatccaaa atttcagcaa tagggcttaa aatatcttgc tttaaaaaat taagtggaat
     3601 ttgataaata ctagccgcat caacactttc tatcacgcaa tttttttcca ccccgcaaga
     3661 aatagcaatt ttatctttta aatctctatc aagagctttt tcactacgac aaataatcat
     3721 atcaggacta atgcctatgc gccttaactc gcctacacta tgttgagttg gctttgtttt
     3781 taattcccct gcagccttaa taaaaggtac tagagtaaga tgaatattca tagcattatt
     3841 tttacccact tccaaacgca aagcacgaat agcttctaaa aaaggcaagc cttctatatc
     3901 cccaacagtt ccgcctattt caacgataag tatatctttg ccttctcctg cttttttaat
     3961 gcgatctttg atttctccta ctatatgagg gataacttga atggttttgc caagatattc
     4021 tccacgcctt tctttttcaa tcacactttg ataaacccgt cctgtagtga agttattatc
     4081 ttgagataaa ctctcatcca aaaaacgctc ataatgcccc aaatcaagat ccgtttctgc
     4141 tccatcatca gttacaaaaa cctctccatg ctcaaaagga ctcatagtgc ctggatcaac
     4201 attgatataa ggatcagctt ttaaaatact cactttaagc cctgaatttt ttaaaagtgt
     4261 tgcgatagaa gcagcggcta tccctttacc caaagaactt aaaactccac ctgttacaaa
     4321 aatatatttt gtttgtttca ttgataataa gccttatttt tttatctaat tatagcttga
     4381 taaaactttt tatttcatta gaattttaag taaaaaatgc aagaattaca aaaaatattt
     4441 ttatcaaaaa aggaataagc atgcaaatca ctttactttt tcacactcca ttatctgttt
     4501 gttctcatgc aacaagaact tgttggcaaa gctttgaaaa aggcgattgc ggtggcgaaa
     4561 aagataaaga acttatcgat cgcgtgggca acaaattcaa acacgcttca accttagaac
     4621 atctaaacta tactttttat atacaaggaa tttcaagagc ttgcttacaa gaagttgcaa
     4681 gacaccgtca cactagtcct agtgtaaaaa gcacgcgtta taccttaaaa gaacttcgca
     4741 atgaagctga atttaaaata ggagattttg aaaatgcaag ccgttatctt gtgctttgtg
     4801 gtaatgaaga ggttgataac gcaagcatta aagccttaga aaatttacgc actattttac
     4861 aaaaaagcat tagtctagat atagccaaat actgcttacc agaaagctat aaaactgaac
     4921 ttacactaac gattaatgca agaagtttgc agaatttcat ttctttgcgt agttcaaaat
     4981 cagctctttg ggagattaga aatttagcaa atgctttatt tgaagccttg ccacaagaac
     5041 acaaatttat atttgaacat tgcttacata aagatataga ataaatcata ctaattttat
     5101 cttatttaaa atattgttat gctaccattt ataaaatcaa gctttacgca agtatatttt
     5161 catatacctt gtgcttgatt atagtttctt ataaggactt tttatggata aacaattttt
     5221 tcaagatttt ctaatgcttt cacaagctca tactataact actcttgcta tgctttgtgt
     5281 tgttttttac gcattaaaaa aaatgcggga tataaaaatc aatttttctc ttcgcatgct
     5341 atttgcgctt ttaatgggtt tggggtttgg ttttgctttg caatatttgg caaattttcc
     5401 agatgctaaa gaagcaagta atattctttg gtatagtgaa acaaaacatt ggtttgcatt
     5461 tgtaagttct gtttttgtag cttttataaa aatgctggtt gttcctcttg taagcatttg
     5521 cattataaaa gtaattatag aaattgataa aaatatcaaa atatcctcct tgcttggaat
     5581 aagtcttttt tggatactct ttagcacagc catagctgca accttgggta tatttttagg
     5641 ttatagtttt gatttaggaa gtaattttgc tatatatgaa ggaaataaac aaattcgcga
     5701 aattcaaact ttttcaaata ttatactagg gctaatacct agcaacatca ttgcagctat
     5761 taataaagaa aatattatag ctattgtcat tttttctttt tttataggaa ttagtgctaa
     5821 aaaaatttct aaaaaagaag agtatgaaca agcctttaaa agttttcata attttatcct
     5881 aaccttttat aatattatga tgaacatgac tgctacagtt attagattta tgccttatgc
     5941 tgtagtttgt atgatggcta atgtgctttt aagcaatggt tttgaagcta tcaaaacagc
     6001 tggacttttt ataatgctta tttatatagc tatgttaata atgttcgggg tgcatttttt
     6061 acttcttgct tcacaagggc taaaccctat aaaatatgca aaaaaagcat ttcctgtatg
     6121 gttatttgca tttagctcaa gatcttcttt gggcactttg cctatgacta cttcaacttt
     6181 gcaaaataaa tttggagtta attcagctat agctaatttt gtagcatcta taggtacaac
     6241 aacaggactt aatggttgtg cgggatattt tccagcttta gcggcagttt ttgtagcttt
     6301 tgctacacat acacatattg attttacatt tgctttaatg atagttttgg tagctgttat
     6361 tggatccttg ggtatagctg gagtacctgg aagtgcaact atggcagctt ctattatgct
     6421 agcagggatt ggatttggta ataattttgt catgctaagt ttgattttag ctatagatcc
     6481 tattatagat atggcaagaa cagcaagtaa tgtctcagga gctatgactt cggcactttg
     6541 tactgcaaaa aatctaaaag ccctagataa agaaatttac aattcttaat ctcttaaaac
     6601 ccaatatttt tcattgggtt ttagtattta ttggcaacct tcacattcta tgctacgatc
     6661 tgcaacattg actttttcac tatcagggct ttcgcttctt agataataag tagattttac
     6721 tccgagctcc caagcgagtt gataaatttc atttaaatat cccccacttg ctttatcaag
     6781 cgataaaaag atatttaaac tctgcccttg atcgatccat ttaccacgca cagcagcagc
     6841 ctttacaaga attttttgat caagttcgta ggctggagta tagtattgcc aagtatcaag
     6901 gcttaaattt ggcacaacaa caggtatcat accacttaaa ttttgttcaa accactttct
     6961 tttgtaaaca ggttctatag tctgcgtagt acccactaaa atagaaatag aagaagtagg
     7021 tgcaatggcc atcaaataac catttctcat accatctttt ttaacttttt ctctaagttt
     7081 aacccagtcg cattcacttt gatcaaataa gccctctctt aaagttaaag ctttagcctt
     7141 aggacttgct acatcaatag gaaaaatccc cttgctccaa tttgatcctt caaaatcttc
     7201 ataagaacct ttttcaagag ctaaatttga actcgcatta atagcctcaa agctaatttg
     7261 ttccataatc tcatcgattt tatttaaatg ctcatcgctt ccccaataaa tcttagcctc
     7321 agcaagcatt tgtgcctcac ccatgactcc aagacctatg gcgcgagatt ttaaatttgt
     7381 atcttttact tttctatgag gataaaaatt taaatctatc acattatcaa gcatacgaat
     7441 agccgttggc acaacacgct ctatatcttc tttagtatac actttgctaa gatttatact
     7501 tgctaaatta caaacggctg tttttccatc atttttatat ttttccacta tataaacttt
     7561 attaccatca atactatcta aagttgagat ttttttggct ggtttttcat atcccccatc
     7621 gatcacaact ttttgttctt catcaaaatg aagctcatct ccattttcaa aaactacttt
     7681 gatttgataa taatttggct cggtattttg aaaaatttca gtacataaat ttgaacttct
     7741 aataattcct acatgagcat ttggatttgc tctgttggca ctatctttaa agcataaaaa
     7801 tggcaagcct gtttcaaaat aatttagcaa aattttcttc caaagctctt tagcttctac
     7861 gatttctttg gtaatgcttt catctttttc atattcttca tagcgttttt caaaagcctc
     7921 gccatataaa tcacacaaat ccgccgtatc cgcaggatca aaaagagtcc atttatcatt
     7981 agctcttact ctcttcataa aaagatcatt gatccataaa gcagggaaaa gttcatgagc
     8041 acggcgtctt tcttcacctg aatttttacg caaatcaata aaatcactta tatccatgtg
     8101 ccaaggttct atataaacag ctatagctcc ttttctggtt cctagctgat ctactgccac
     8161 ggcaatatca ttagtaattt tcaagaaagg tataatccct cctgcggcat ttttatgccc
     8221 atctatgctt ccacccatag cacgcacttt agaccaatcc caacctatac cgccaccaaa
     8281 tttagaaagc aaagccattt cttggtaaga atcaaaaata ccttcaatat tatcaggggt
     8341 tgatcctata taacaagaac taagctgatg gcgcgttgtt cttgcattag ataaagtcgg
     8401 agttgcaagc atgagttcaa atttagaaat taaatcataa aatttcttcg cccattcttg
     8461 aggattaaat tcattctgcg ctaaaaacat cgcaatggcc ataaacattt gttgaggaag
     8521 ttctataggc atacctttac tatctttaat caagtatcta tcatataaag ttttaatacc
     8581 aagataagta aattgcatat cgcgttcagg tttaatataa gcatttaaat catctaaatc
     8641 gtatttttct ttaagaccaa gtaagattct tccttctttt tcgccctttt caaaatactc
     8701 acgcaaatga ttatagcgat tcataccatt aactttttta tataaatcaa ataaaaaaag
     8761 tctagctgca acaaaggtcc aatttggaca atcaatatct atcttatcta ctgcagtttt
     8821 aattaaagtt ttttgaattt cttcagttga aattccatca cgaaattgaa tctttgcatc
     8881 gagttcaagt tcgcttaaat tcacaccttc taaatctttt acagcatcag aggtgcattt
     8941 tttgatctta gaaacatcca attcttctgt acgaccattt cttttaataa ctttcattgc
     9001 cttccttgct ttttatttaa atgttctttt aaaaattaca tcaacatttt ttgtatagta
     9061 gttataatcg aaacattttc ttacatcctc ttcgctcaaa ctttttctta aatcttcatc
     9121 gcttaaaagc gctaacaaaa acaaactttc atttttttca ttgatagcag ccttaccatt
     9181 ttgcaaatct gcccaaactt tcatagcgtt tctttgaact attttataag cttcttcacg
     9241 actaatgcct ttaaatggaa gctctaaaag aaccctccct gaaaatacaa gcccgcctgt
     9301 aagatttaaa tttttcatca tattttcagg ataaactaaa agcttatcaa tcaaatttgt
     9361 aagacgcata agcataaaat cagccgtgat aaaagcatca ggcaaaataa atctttcaac
     9421 actagaatga gatatatctc tttcatgcca aagtgcaaca ttttctaaag ctggagttac
     9481 aaaagatcta agcacacgac aaagccctgt gatattttca cttaaaacag gatttctttt
     9541 atgtggcata gctgaacttc ctttttgtcc tacactaaaa tactcttcag cctcataaac
     9601 ttcagttctt tgaaaatgtc ttatcgctac agcgatttgc tcacaacttg aagctaaaat
     9661 tgcaatagca gaaataactt gagcataacg atctctttgg atcacttgat ttgaaacagg
     9721 ggcagcttta agacctaaat ttttacaaac ttcttcttca aattctaaag gagcatgagc
     9781 aaaatttccc attgcaccac tgatttttcc atagcttatc acttcttttg catgttctaa
     9841 aagctctttt gcatgcaaaa tttcatcata ccaaatagct aacactaaac caaaagtgat
     9901 aggctctcca tgaattccat gacttcttcc taccattaag gtatttttat gctccaaagc
     9961 acgctttttg atcacttcta aaagcaaaga aacatcttct aaaataagct ccaaactctc
    10021 ttttatctgt aaagcaacag ccgtatctat acaatcagaa cttgtcattg cataatgcac
    10081 aaaacgactc tcttctccca aactttcact tacacttgta agaaaagcga taacatcgtg
    10141 ttttgtggtt ttttctattt cgtctattct tgcaatatca aattttgcat ttttaagaat
    10201 tttttcgcag tctgtgtcat taatgagacc gagtttattc caagctttta cagcggctaa
    10261 ttctactttt aaccacgcat cgtattttgc ttgcatgtcc cattttttag ccatgatttc
    10321 tctgctatat ctttcaacca tctttgaaac ctttttagct ataattttat attttaaaaa
    10381 acagaaatta tatcaaatta tcctaagaaa gttattaaat ggcttacata aaaataaaac
    10441 tctcaaataa tggaaaaaag gcatttcaag tccttatgga aaatttaaaa attagcataa
    10501 atgaagcaca aaaactcata gacaaaaaaa gacttttttg tgatggaatt ttagtagaag
    10561 aaaagaatga aattttaaat ggtttagtag agcttatagt ctatgaaaac aatcccaaag
    10621 gagtagaaat tgtctttgaa aatgaagact ttgccatact tgaaaaagaa agtgggatct
    10681 taagtcatcc aaatggtaga cattgtaaat acagtcttag tgatgaaatt tggcatcttt
    10741 ggggaaaaga agcttgcgta gcacacagac ttgataaaga aacgagcgga cttatacttg
    10801 tagccaaaaa taaaaaagct caaattgatc ttaaagcttt gtttgaaaaa aaactggttc
    10861 aaaaagaata ccttgctcta gctaacggaa aaatagaaga aaattttata attgataaag
    10921 ccataaattt agccaaaaac tacgatgatg taaaaacaag gatgcaaatt tgcaaggaag
    10981 gaaaacaagc tatcactgag tttgaaattt tagaatactt tcctaaaatc aacgctactc
    11041 ttttactctg caaaccctta acaggcagac aacaccaaat aagagtgcat ttacactata
    11101 aaaaccatac cattttaggc gatccacttt atgggcttag caaagaacaa atcgaaagta
    11161 ttttagatga aaaattaacc cccaaagaac gcttaaaact tacaggtgcc ttgcgtttgt
    11221 gtttgcattc ttatcgtttg aaatttcaat ataaaaatca aaattttaat atcaactcaa
    11281 aaataaacat aaaagaaatt ttcaacaatt ctataaaata aaatgatgtt tcactacgct
    11341 acaatcaatc acttttctac caaattttaa aacaaaaaaa taattcttgc taaaacttta
    11401 agtataatta aataaaaaag cgagattttc caaatgaaat ttgttaattt tatacagggt
    11461 caaaaaccca atctaggagt actaaattct agtggaaaaa ttgtaagttt tgatgatttt
    11521 ggcattgaaa ctaacgatat gaatgaattt attatccatt ttgataaatt taaacacaaa
    11581 cttacagact tggattctaa aatagcctat gaaattccac aagaaaatta tctagcccct
    11641 attatagaac ctcgtcaaga tattatatgt cttgggatta attttttaga tcatgccaaa
    11701 gaatctgcca aatttaaggg tgaaaaattt gaagaaagag aatatcctgt atattttgga
    11761 aaacgttgca atcaagctac gccacctttt ggcgatatac ctttacatgc agatgtaact
    11821 tctcagcttg attatgaatg tgagcttgca tttattttaa gtaaagatgc ttataaaatc
    11881 aaagctaaag atgcaaaaga ttatatcttt ggctatacta ttatcaatga aatttcagct
    11941 cgcgaacttc aaaaacgcca caaacaattc taccgagcaa aaagtcttga aggtagcact
    12001 ataatgggac cttatatcac aagcgtagat gaaatttctt atcctcctaa actccaactt
    12061 caaagctatg tcaatgatga actacgccaa aactctaaca ctcaattgtt tatttttgat
    12121 attgcttatg tcttagaaga acttagtgca ggcatgcttt taaaagctgg aagtattata
    12181 tctatgggaa ctcctagtgg agtaggtatg gggttaaatc cacctacttt tttaaaatca
    12241 ggagataaag tacgttgcgt tatagaaaat ttaggagaac tttgtaataa aataaaaaat
    12301 atcaattatt aaataattta ctaaaattat actataatgg cattttaaaa acttaaatta
    12361 aggcagaaat ttatcatgaa aaaaataata atgattttat gtttatctta tgcaaatata
    12421 gtctttgcag tagatatgat aacccctatt ccaaattcca tctcttatga taaagaaaaa
    12481 gctgaacttg gaaaaagtct ttatatggat aaaagtttat ctaaagatgg aaaagtttcg
    12541 tgcaatactt gccataggct tgatcgacac ggtgttgatg ggcttgaatt ttcaatagga
    12601 gttgataatc aactcgataa accctttaac actcctacaa cctttaattc tgtgtttaat
    12661 tttgtgcaat tttggaatgg cagagctaaa gatttaacag aacaagctat gggacctttt
    12721 ttcaatccaa aagaaatggg gctaagtcct gaacttcttt tacaaaaagt taattcaaat
    12781 gaaaattatg taaaaacttt taaaaaactt tatggagaag ttacagtaga aaacatagct
    12841 cttgcagttg ctgaatttga aaaaacctta atcaccccaa attctccttt tgatcgctat
    12901 cttagcgggg atcaaaatgc tatttcaact caagctaaaa aaggttacga agattttaaa
    12961 gctaatggct gcatctcttg tcatcaaggt caaaatatag gtgggaatat gtttcaaaaa
    13021 atcggtattt ttgaagaata cccaaaccaa gaagatttag ggcgctatga aatcacaaaa
    13081 agagaagctg ataaaatggt atttaaggtt cctagtctta gaaatatagc caaaaccgcg
    13141 ccttattttc atgatggttc tatacctact ttagatgctt gtgttcagtt tatggcttac
    13201 tatcaactag gaaaattttt agatcaagaa acagttgaca atatagttgc attcttagaa
    13261 agcttaacag gagaatatca tgacaaataa aaaaagttca tttttgataa aatttattat
    13321 tttatctaca ctagttttag ctttcattct tgttttatta ggtattattt ttaataacta
    13381 ttcttcatct aaagataata aagaattgat aaacatagtt caacaactag aaatttcaga
    13441 tgaaaaaatc aattctgttt ttcaaaatag ttttaatttt atcaactacg atccaagtgt
    13501 tcaagcgata aaaaaaatgc aagaaaactt tacaaaactt aaaacttttg ggattgacat
    13561 aaacaaagca gaagaaattt ttaatgccaa actaatccag cttaattatt ttaaatccgc
    13621 aaattccata gcagtaaatt caaaacttta tttatttgaa ctagctaaaa attattttga
    13681 agaattggaa caaaaccatg aaacaaataa aaacaactat aaaacaatga gttctatgtt
    13741 aagcgttctt tcaactgaaa atattttaca aaaaacaaca ctaaatcaac tcaacaatct
    13801 tatgaaagaa atcaaaaatg atacaaaaag tgaaaattta caactttttt taaaacacta
    13861 taacatgatt gtaaagcaaa tttctattat gcaagataat tcttctattt atgagaataa
    13921 ttctctcatg aaagagttaa aacaacttaa cacttttacc caaaatacta tagaacaatc
    13981 taatttattt aaattttata tcgctttagc agtatttgga attactcttg tattatttgt
    14041 attttttatt ttattaacac taaaaaaagt catcatgcca attcatactt tagaaaaact
    14101 aagcgctaat ttagctagca aagaagccaa tctacactct cgtttaaata tagatccaaa
    14161 aagtgagctt ggacaaagtg ctcaatatat taattcattt atttccaccg ttcaaaactc
    14221 aatcatagaa gccatagaaa atgctaaatc aagtcatcaa aattcacaaa aactcaaaaa
    14281 caactctatg atgcttgaaa acagctctaa ttcgcaacat gaacaaattc aaggagttaa
    14341 agaaatcact catgttttag atgatcatat caatcttgcg ggaaatttag cacaagaaag
    14401 tatagaaaat atgcaagata tgcacatact aatggataaa gtagaactta ctctatctga
    14461 acttgtaaat ttaataaatg aaaacaatga aaaagaacaa aatatagtag ccaatatgga
    14521 caatctaacc caaagtgcgg ataatattat agaaatcaca aactccatta aagacatagt
    14581 tgatcaaact aatttacttg ccctaaatgc agctattgaa gctgcaagag caggcgaaca
    14641 tgggcgtgga tttgctgttg tagccgatga agttggacag cttgctgata aaacaagtaa
    14701 atctctttta aacatcaatg ctactgttaa tactatagtc caacaaatca atgacaacaa
    14761 agccttaatg gatcttatcc atgattctat gaaagaaacc tcttcaaaaa ccaatgattt
    14821 acaacaagaa cttgtaaatt ctatgcataa attggaaagc tctatagaat caacccaaac
    14881 catgaaagat aaaagcatgg aagtaaaaga taaaatgctt atcttaggaa caaatataga
    14941 taaagttaac gaacttgcaa attctgttaa agatttatca tgtgaaatca ataatatctc
    15001 tcaaaatgtt ctaaatggtg cctctaaact ctccgaaaaa ttaagtagct ttcagtaact
    15061 tttttcacgt taatttaact taacgtgaaa tttcaataaa aattttattt ttaatttatg
    15121 tttttcaagt aaaattagca gtttttattt caaaggagat actatggagt ttcttgaact
    15181 tttattagtt ttaatcgcct tgatactgat tatcaaaaaa ccagaaaaag aaaatttggc
    15241 ttttggtttg gtaatggtag cttggctttt aatggttttt ttctatgttg gccacaaaac
    15301 aggcgcacta ttaacaataa tgaatctgta aggaagggct aaatgaacga aatcaataaa
    15361 acaaaaaatt tctacacact aatgtgttta gcaggctttt tgattatact cttgcctgta
    15421 ggtattgcaa atttgatatt tggttatatg ttgggcgata gtccttgcac gctttgctgg
    15481 ggacaaagag aagcaatgat ctttatcggt gtaatggcgc ttttcattgt tcgttatggt
    15541 atgaaaggta aataccttgc tgctctttta atcatgacag cagtagggct ttatcaatct
    15601 tttgctcact atggtaatca cgctcataga gatttagatc aaggttttgg tttagcagtt
    15661 tttggtatcc atacttattt ttgggctgaa gtagtatttt gggctgttgt attgctctta
    15721 ggtgtgattt ttgcttttgc tcctaaattt aatgcttttg aagctgaact aaatggagaa
    15781 aagtttagaa aatatactaa atttagcttt gcagcagttt taatcagtgc tatcatcgta
    15841 gcatcaaatg ttttccaagc ctttgttagc acaggtattc ctccttatgt aggacaaggc
    15901 gatcctgtaa gatttagttt aaatccaaaa tacatcattt ggagtaaaga aggttggaat
    15961 ggtttatggc aaaatatttc tttcttagga aaacgcgatg ttaaagctcc tgattatgct
    16021 tttgcacctg caagtgaaaa acttggcata aaatttgata atgatatcaa caatgctcca
    16081 tttgcaaaaa tcaatgatga gcttaaaatc acaaatgaac aaaccataaa ttttgacaaa
    16141 gccatcaata ctcttgatta tatcaataac gaatttgtag caagttctaa atgggatgta
    16201 gctttcttag ataataattt tagcgttaaa gaaggttttg aacttgatcc ttatttttca
    16261 gcttctatcg atccaatcat cggtatcata ccttatatga acgataaatt cattcttatg
    16321 ggctcaaaca aatctttctt aagatttgca aaaaatccta atgcaagtga agaagatatc
    16381 gctaaacaat acgctgactt tgtaaaaggc aatgataaat ttaaaggtca aggcgaaagt
    16441 ttaggtcgcg gaagacttga taccgtaaga gcaaaattta accatgtagc aagtatgact
    16501 acagatggaa attatcttta tcttgcaact gttccaaaca acaaagacgc taaaactttt
    16561 gtaatctcta aagtttcttt aaaagatcgt gttctttcag gagaatttac tccaaaagca
    16621 aatcttaaag aaggtaaaac tttaggcgat ctttatgtaa cttctatgac ttttaaagat
    16681 ggggaaattt atgcacttag caaaaatcac aatgtgattg ccgtaattga tccagtcaaa
    16741 gaagaagtag tgaaaactat cgctttccca agctctatca ctaatgctag aagcattttc
    16801 tttaaagatg gaaaaatcaa tattctttct tatcaagatg gagcaaacaa gctttatact
    16861 ttaaactaag ctttaagtcc tagtgaaaac taggacttat atttaatctt atctttaaat
    16921 cctgcttttt caaaacctct taaacgaagc aaacaactat cgcactcccc acaagcttca
    16981 tcttcactct cataacaaga ccaagtaagt tctaaaggta cattttcttt taaggctagt
    17041 tctacaattt tagctttgtt tagtctaaca agcggagttt ttatacaaac tttgaaattc
    17101 ttactcgtac cttcattgat aaattcttgt gccttttgta taaattcatc agtacagtca
    17161 ggataaccac tgccatcttc ttctaccacc cctataaaaa tactctcaca attttccttt
    17221 tcagccaaag atcctgctat acttaagaaa attccattgc gaaaaggcac ataagtgata
    17281 ggtggagtat cgcttgtaca aagctcattt ttagggatgt ctatactttt atcggttaag
    17341 gcattgcccc ctatatcctt gataaaactc acatctaaaa tataagattt ttctactttt
    17401 aaagccttgc aaatttgctt aaaacattct ttttcttttt cttgagtgcg ttgttcatag
    17461 tcaaaatgca aagcgatgat ttcataacct tcttttttgg ccagataagc acacaaagta
    17521 ctatccatac cgccacttat gatacaaagt gcttttttac tcatttttat ccttaaattt
    17581 gctataattt cacaatttta acgaaaattt ttaaatttaa attgcaaaaa aggcaaaagc
    17641 atgataaaca taaaactcat agaacacatt tttaaatccg cttctatcag tcgttggaat
    17701 gattatccaa gaatggcaaa tttggttgaa cttgacaaac aagctcataa attcatcatc
    17761 gcatatttta tcgctaaaat ggaaaaagat gtggatatga gagtgattat agaaggggga
    17821 atttttgagt ttttaagtcg tgttgtggta actgatatac gccctgatgt gtatcatgaa
    17881 atcgtgcgtc aaaaaaaagc tgaagttaat gcttgggttt taagcaaaat cgaacctatg
    17941 atagaagata tagaagatgg ggaatttcta aagcgttttg aagcgtattt aaatggtaat
    18001 gcttatgcta aagaaagact tatcttaaaa gcagcttcat attttgctac aagatgggaa
    18061 tttaacatag tttatcaaac ctcagctttt ttaaatgata ttgatgagat taaaaacaaa
    18121 gttgaagaag aattagaaga ttactatgag cttataggag ctagaaaaat cgctttaaat
    18181 caaaaaatag ccaaaattat tgatcttagc ggaagacttc gctttcaaaa acgttgggct
    18241 caaactccac gcataccaga aaccgcggtt ttaggacata tgcttgtggt ggcgatttta
    18301 ggatattttt actcactaaa aatcaaggct tgtgataaaa gacttgagaa taatttttat
    18361 tgtgctttgt ttcatgattt gccagagtct ttaacacgtg atattatcag ccctgtaaaa
    18421 tacggcattg atggacttca tgatatcata aatgattatg aaatgaaact tattaatgaa
    18481 agaattttac cctttgtacc tgagggttta agggctgagt tttcttatat tttaggcatt
    18541 agagaaggta gaaacggtga gtcaaatttt gtaaaaaatg agtttgaaaa tcgcacttat
    18601 aaaaatgcta aaatcgagct ttgcagcgga agtttaagct cttttaatga aaatgaattt
    18661 ggcgctatag atggtaaggc gcttaaatac tgcgataaaa ttgctgctta tatagaagca
    18721 ggacttagta taagttatgg tgtaaagtct aaagaacttg aaagtggttt tttaggaatg
    18781 catgagtttt ttaaagaaaa tcctaccata gatggggtga atttttttga aatttgcgaa
    18841 agtttaagag aatattttaa aatttaaata agatttttat actcctattt tcaatatgtt
    18901 ttaaataaaa atattataaa ttcaaatttt attttgtata aaacataaag gagttattat
    18961 gaaaaaatac tttcaaaagc gctatacttt agcctttttt ataggtatat tagcgggtat
    19021 tttcggagct attgttaaat ggggttggga agtacctttt cctccaagaa atcccaatgt
    19081 tttttggcca gcagatgctt tagaacgtgt tactccacct aaaatttttc tagaacaact
    19141 aggcttacct actgattgga cttatatgtt ttcaggtatg caaatgcctt tgtcaatttt
    19201 tatagtacat gtcggttttt ctattatttt tggagtggct tattgtatga tagcggaaaa
    19261 atggcaccgt attactatgt ggcaaggtgc agtttttgga ttttttgttt atctttttgc
    19321 ccatgttatt gtaatgcctt taattgcaga agttccacca ctttctgaaa ttccttttga
    19381 tgaacacctg tctgaaattt ttggccatat tgtttggctg tggggcatgg aaatagttcg
    19441 tagagatata agaaatcgta taaccaaaga aatagaagaa tgaaaggaaa cctttcattc
    19501 catatctaaa accgcacctt tactagcatt gctaacaagt ttttgataca ttctaagcca
    19561 tcttgaagac acctcttttt gaggcaatgc aaattctttt ttacgtttag caatttcttc
    19621 ttcacttaca tttgcatgga tagtataagc atccacatca atttctattt catctccatc
    19681 ttttaaaagt cctataagac caccttcagc tgcttcaggg gaaatatgac cgacgcttaa
    19741 accccttgta gccccactaa aacgaccatc ggtgattaaa gctacatcag cacctaaacc
    19801 catacccatt aaaagtgaag taggacttaa catttcttgc ataccaggac ccccttttgg
    19861 accttcatag cgtattacac aaacatttcc tttttgcacc ttgcctttga taatgccttt
    19921 tatagcttca tcttgagagt taaaacaaac agctttgcct ttaaattttc tttctccgat
    19981 tattcctgcg gtttttataa cgcaaccttg ctcggctaaa tttccaaaca aaatggcaag
    20041 cccacctact tttgagtaag cattatctac tttacgaatg atattttcat ctttgatttt
    20101 ggcatttttt aagcgttctt tgagactttc tcctgtaatg gtcagtgcat caagttctaa
    20161 aatatgtcct tgtctgcttg aaatttcagc cataactgca ctcacaccgc ctgctttgtg
    20221 gatatcatcc atataaacac tatttagcga tggggctatt tttgctatgt gtgcaacttt
    20281 gcttgagatg aaatttaaat ctttaatgtc tagtgctacc cctgcttcac gcgaaatggc
    20341 aagcatgtgt aaaactgtat tgctacttcc acccattgcc atatctacta ccatagcatt
    20401 acgcacagct ttttgagtga tgatattacg aattttaaaa cgttcatcta gggcgatttc
    20461 acaaatacga cgcgctgctt ttcttaaaag ctcttctctt tctttactta aagctaaaat
    20521 ggttccattg ccttctagtg ctatacccat agcttcgcat aaggtattca tagaatttgc
    20581 tgtaaacatt cccgaacaag atccaccact tggacaggct gaacattcta tatctttaaa
    20641 ttcttcttca ctaatttttt tggattcata agcccctaca gcttcaaaaa cagagctaag
    20701 gctgatcttt tctccttttt tggttactcc tgaagccata ggcccaccac ttacaaaaat
    20761 ggttggaaca ttgaccctta aagctcccat taacatacca ggagtaattt tatcgcagtt
    20821 tggaatacag attaaagcat caagttgatg agcattcatc actgtttcaa tagaatttgc
    20881 gataagttca cgacttggta aagaataaag cataccttca tgtcccatag ctataccatc
    20941 atctacgcct atggtattaa actcaaaagg tacgcaacca tttttgcgta tctcatcttt
    21001 aatgatttta gcataatcat ttaaaaaata atgccctggg attatatcta tatagctatt
    21061 tgctacacct ataaaaggtt tgtcaaaatc ttcatctttc aaaccacaag cacgaagtaa
    21121 agaacgatta ggtgctctta aatgtccttt ttttatcgca tcgcttctca ttgtaactcc
    21181 tgataataat tttttaaaat tatatttagc aaaacttaat ttttgtgaaa tttattttga
    21241 tatacatttt cataaatgat aaaaattatt aattgacaaa aatatttttt tataatacaa
    21301 tactttttga taatcaaaaa aggagtcaaa atgagacaat atgaaaccta taaatgccaa
    21361 aaatgtggca atgaagtaga agttcaaaat gtaggtggcg gtaagcttag ttgttgtggt
    21421 gaagaaatga aatgtatcac tacagattta actgcagtaa atttaatgaa agcttttgca
    21481 ggcgaatcta tggcaagaaa caaatacgat ttatttgctg atgtagctga agaagaaggt
    21541 tggcatgcgg ttgctagaca ttttagagaa gcggctgaaa atgaaaaatg gcatgcaaga
    21601 gcagaattta aagcttatca tgaaatcgtt gatggcaaac ctttagaagt aactacaaaa
    21661 aacctagtaa ctgctgcaga aggtgaaaac tatgagcaca caactatgta tccaaatttt
    21721 gcaaaaatcg ctgaagatga aggcaaaaag gctatagcga gattatttac agctattggt
    21781 aaagtagaaa tcgaacacga aagagaatat ctagcgctta aaaaaatgct cgaagaagaa
    21841 gaatttttta atagtgaagt agaagaatta tgggtttgtg aagtatgcgg acatatacat
    21901 cgtggcaaaa aagctccagc agcctgtcct ttatgtaaag caccaaaaga gtattttaaa
    21961 cgcgaatttt tgggttaagt taagaaattc ttatcctttt taagataata ttataattat
    22021 tttttaataa aaggataaga aaatgaaaaa attactattt ttattttttg ctttaacggc
    22081 ttttctcttt ggtgctgtaa atatcaacac tgcaacacta aaagaattaa aaagtttaaa
    22141 tggtattggc gaagctaaag ctaaagcgat tttagaatac cgcaaagaag caaattttac
    22201 aagtattgat gatcttaaaa aagttaaagg cataggtgat aagctttttg aaaaaatcaa
    22261 aaatgatatc acaatagaat aaaagggcat ttttgccctt ctttttagaa aaatttgaaa
    22321 actttatttg acacaaaaga acttttaaac gaatttgata taaatttaat cggtattgat
    22381 gaagcaggac gcggtgcttt agcaggtcct atgatgatgg cagcttgcaa actgaacaaa
    22441 caacttgatg ggttgtgtga ttctaaaaaa ctaagcgaaa aaaaacgcga agaactttat
    22501 gaaatcatca tcaaaaattc aaactatctc atacttgctt tttcttcaga acaaatcgac
    22561 gcactaggct taagcacttg tttaaaaaaa ggcttaaaac ttataaaaaa gcattttaaa
    22621 acagaaaata acttcttata tgatggaaac accaacctag gtataaacgg gataaaaaca
    22681 caaatcaaag ccgacactag cattttgcaa gtaagtgcag ctagcatact cgcaaaagtt
    22741 agtaaagata gagtgatgaa tttcttagct aaagactttc cttgttatga atttgaaaaa
    22801 aacaaagcct atggcacaaa agctcataaa gaatttatag ctaaatttgg aatttgcaaa
    22861 ctccaccgaa aaagttttaa acttttatga ttattttgct aaattttgat gcaaactcaa
    22921 agcacattct ataccatctt ttatagccca aacaactaaa gattgtcctt ttctagcatc
    22981 tccacaagca aagatttttt tatgagtggt ttggaaattt tctgtgctta tgttgttttt
    23041 ctcatctaat ttcactccaa aatttttaga gatagcttct tcgcacccgc taaaacccat
    23101 agctaaaagc actaaatccg ctttataagt ttttttagaa tttgaaattt cgacatttat
    23161 agctttgcct tctttaaact cgcgttttaa atcatttgct tcaacacctt ctacatgagt
    23221 ttttcctaaa aatttctttg tcattttttg atattcccta ggatctttgc catatacagc
    23281 aatggcttct tctaaaccat aatcagtagt aaaaatgtca gcttttaaag gccaaggatt
    23341 gttttggctt ctttgcaaag gtctttttgg acttctttca aaacgcacta tagatttagc
    23401 cccttgtctt gtcgctacag cgatacaatc cacacttgta tccccgcttc ctataaccaa
    23461 gacattttta cctttggcca tatctgcacc cttgcctgtt tttaacaaag ttttggtatt
    23521 ttgcgttaaa aaatcaaggg caaattcaac cccttttagc tttctacctt ctatatcaag
    23581 atctataggc ttacttgctc ctgtacaaag caccaaagca tcaaattctt ttagaagttt
    23641 tgaaacctta tctttgctgt ctatattttc attcacttta aattcaatcc cacttttttt
    23701 aagcaaatcc acccgtcttt gaactatact tttatcaagc ttcatatcag ggatgccata
    23761 catcaaaagt ccgcctattt tatcgcttct ttcaaaaaca cttactttat aacctagtga
    23821 atttaaagta ttggcacaag caagcccagc aggcccactt cctatgacag cgattttttt
    23881 gccattgtat tgcttaggtt tatttactct tactaaattt tccttaaaag cattttctat
    23941 aatggataat tcattatttt ttatgctcac actaacacca tttatcgcac acacacaaga
    24001 atcctcacaa ggagcagggc aaacacgacc ggtaaattca ggaaaaggat tggtaagatc
    24061 aagtctttca taagcttctt tccataaaga acgataaaca agatcgttcc attcaggaat
    24121 gagattgttt aaaggacagc ccacatcttt tccttcgctc atcacacccg tatgacaaaa
    24181 agctacccca caatccatac atcgtccacc ttgaacttct tgttcttttt tatccaaagg
    24241 tatagtaaat tctttgtaat ttaaaatcct ttctttagga gcaatttttt taaaatccat
    24301 tcttttaaag tccaaaaaac ctcttgcatt tcccattttt actccttatt taatatactt
    24361 tttagcttgt ctataataat tttttttctt tcttctataa aattattaaa attttccaaa
    24421 gataaatcaa catcaggaat taagtgtttt cctaaaaatt cctttctatt tccattacat
    24481 ttttcattta cccattgctt taaaggtttg ttatttttag attc
//
LOCUS       DAPIWJ010000016        24480 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.016, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000016 DAPIWJ010000000
VERSION     DAPIWJ010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24480
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.016"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..216)
                     /locus_tag="RJ259_000480"
     CDS             complement(<1..216)
                     /locus_tag="RJ259_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HDV7366220.1"
                     /translation="MKKIIILTFFVVFAFGDVNRTIINNINEKINTLNTVISASIWNI
                     RYENFIKYQDINDELIILNLNLKKTSDI"
     gene            complement(213..1268)
                     /locus_tag="RJ259_000481"
     CDS             complement(213..1268)
                     /locus_tag="RJ259_000481"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HDV7366221.1"
                     /translation="MQVEVKLKENAYKVYIDELEELEFDSKVFILSNPKISGLHLKTL
                     LSKIKAKEIFIATVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGF
                     AASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCESFFLK
                     TLSSRELAAGMAEFIKMAAMFDYSILDFIEKIDEKSFLNATCENEIFTQIIAKSIELK
                     SRVVEQDEKESRLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGL
                     LDKMQSQRIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSNKKINFVLASPLGKGLI
                     KGDISKEDIIATLREFQ"
     gene            complement(1314..2714)
                     /locus_tag="RJ259_000482"
     CDS             complement(1314..2714)
                     /locus_tag="RJ259_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3400 family protein"
                     /protein_id="HDV7366222.1"
                     /translation="MNNILIIIDGILAKHFLERLCFEKGLGYFFTVVCQNSEKNNLNI
                     SSEYIDLHYFDPTSTARLENIMSKDFKQAFIYMQDEFETKKSYEALRSLNPNLEIEIM
                     DFWGLSVNDTHANLADARMTLSRRFMDFLPDIALTAQYIGLGVGEIMEVKIPAGSIFA
                     YRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLEPNDSILIVGDPVVLQSIFHNIRGKA
                     GQFPMPFGSNVFALIDMKNMNQNMQERVLDTTLKLTQKSNAKRFFIHVINPKLGVMYE
                     KLKKLSEDKEGVFFDYFNTDFKQISMWLQNNDIGLVVTDIKNFEKEKQAFFDLKIPIM
                     KVGEASFDELKEAIILSADESELENNANVITDLSKQLDFGVILYYYNPNSQNTTDMEE
                     YFRSLSKLYDKNIQIINKNDENPLLNLQYREDLLQFVSFQKELLNRDFARNLSTNLNR
                     HYYKMRQNYQLFIPVE"
     gene            2744..3865
                     /gene="tgt"
                     /locus_tag="RJ259_000483"
     CDS             2744..3865
                     /gene="tgt"
                     /locus_tag="RJ259_000483"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HDV7366223.1"
                     /translation="MEFKLKHKDGMARVCEITTAHSTFLTPVFMPVGTVGAVKSLDAN
                     DMKNELDAKIILANTYHMYLRPTSKVVKDFGGLHGFTKFDRSFLTDSGGFQAFSLSKN
                     SKHFNEGIEFKSHIDGSRHLFTPKSVLDTQYDFNSDIMMILDDLVALPATKERIKISV
                     DRTILWAKEAIAYHKNMQNKGIGIGQNIFGIIQGGTDYEERKRCALSLNEMPFDGLAI
                     GGLSVGEENALMYETVQNLNPYLDENRPRYLMGVGTPEDLVENVERGVDMFDCVMPTR
                     NARNGTFFTSFGKFNIKKAEFINDHEAIDPICSCYTCRNFSRGYLNHLFKAKELTFFR
                     LASLHNLHYYLELARKMREAILNNSFTQFKRNFYHLRGK"
     gene            3867..4634
                     /locus_tag="RJ259_000484"
     CDS             3867..4634
                     /locus_tag="RJ259_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HDV7366224.1"
                     /translation="MLELHENLKKILQAKNLETFYSEIYGQKIFVYVGLNLETWLFND
                     EKIYKLQDEEFKLSSIEEFSNFIKSILEDFKVQNTHFQNLLEHKEGIILKGGFVKNFY
                     KKSFVLRQKINKNLKQINLLSEAFNLLLSEQAQYKKHLKILNLSISILSKNTKEHLAR
                     IDTLYTLTNAIKNEKMNKSIYLLSILSSIFLPLNLIVGFFGMNTNNLFFKDSPYGTLY
                     IFSLICCILIVGFIFYYSKKTKEFDLDEGKKAKKQTK"
     gene            4687..4763
                     /locus_tag="RJ259_000485"
     tRNA            4687..4763
                     /locus_tag="RJ259_000485"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4721..4723,aa:Arg,seq:gcg)
     gene            complement(4766..5215)
                     /locus_tag="RJ259_000486"
     CDS             complement(4766..5215)
                     /locus_tag="RJ259_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366225.1"
                     /translation="MVIFCAALALLLFLGVIAYLITSDGKKTIKKQKTSQKQHVAEKT
                     KKFDTDLDKMIIAASDVKLTDIELKELAKLYVQTHKLGSKTSKELDEAAKKKLEFVSA
                     LAANINASAQTVSYLNKELKKIYGSYKKEIDAYEHMGLAKRKIKEDK"
     gene            complement(5231..8476)
                     /gene="ccsA"
                     /locus_tag="RJ259_000487"
     CDS             complement(5231..8476)
                     /gene="ccsA"
                     /locus_tag="RJ259_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HDV7366226.1"
                     /translation="MKNIIKSIGDLRVSVVLFLLFALFCALATFIESAYGTPTAWAMV
                     YDTFWFEYIQLLLGINLLCGMFRYKMFGLKKLPLMIFHISFLFILVGSAMTRYAGFEG
                     ILPIREHTQNSLIESSKTSLRISAIKDGERYSAVNDRYIGNLPFANSFKLKLNLGDDQ
                     AVLKYKDLILNAHYTYKENNNSDPLLVLMLSQKGSQGVDVKFEKGEVKNIEGVNFAFM
                     NDNVKAPFVKIDENLTLSSSENLHFLSMLDGQNLDLKIGEKANAKERRLYEINDISFV
                     VKAASLHAQEALEGSNRPQDESFWLWFKSAWLEVGRTMLISTFGEPQNWKNSLLLHFK
                     DFALSNENKNLELTGSNALKLELSYKNESKEFYIFEYNKPIMIELADQKFFISWALSY
                     EQLPFDIYLRDFVLDRYPGSMSPASYASEITVKNNNENFDYRIFMNNVLDYDGYRFYQ
                     SSYDQDEKGTVLSVNKDPGKIPTYIGYFLLCLGMFMNFLNPHSRFRTLARLINKDTLK
                     HTSVIIFILLLSFGSEKTFAQDLNSTLPVVNTNHAKALATLIVQKSADGRMVPFDTLS
                     REILEKIHQSDSYKGQNSNAVMLSMLVDVDKWQLEPFILMPQNQAVRDAIANILEIPS
                     AKYIAYKDFFDENNRYKLQKYVENANRKNPNARGVFDKEIIKLDERANVVNLVFSGEL
                     FKFIPVQNNPNNVWLAPFSAVTTLKGDEGHIVLALIQNYFSAVENAFKDGNWIRADEG
                     LKFIKEYQEKIGYKVMPSKTKVEMEIFSNKAEIFVKLAPVYLIAGFLLLILVFSKMVV
                     PNLKISFIFKVVYVLNVLAFVIHTVGLGLRAYLSGHAPWSNGYESMVYIAWALSLSGI
                     FFSRKSPIALSLTSILSGVVLMVAHLSEMNPQITNLVPVLNSYWLSIHVSVITASYGF
                     LGLCALLGIFTLFLMCFLKKDGKYNLNILRNITEATRINEMAMIFGLCLLTVGNFLGA
                     IWANESWGRYWSWDSKETWALVSILVYAAILHLRMIPKYCNQFVFALWSMFAYWVIIM
                     TYFGVNYFLTGLHSYAAGEAAQIPNYVYWGFALMVVLAFFARRKRNFVGKL"
     gene            complement(8494..9189)
                     /locus_tag="RJ259_000488"
     CDS             complement(8494..9189)
                     /locus_tag="RJ259_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7366227.1"
                     /translation="MLIVKDLHVYYGLIEAVKGIDFKVETGHIVSLIGSNGAGKTSTL
                     NALLNSVKRTGEVNFLGYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAFN
                     NAENYEHLREQMYKLFPRLASKKHALAGTLSGGEAQMLAISRALMSEPKLLMLDEPSL
                     GLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGRIVMENEAKNL
                     IGDDEIRKKYLGL"
     gene            complement(9176..9946)
                     /locus_tag="RJ259_000489"
     CDS             complement(9176..9946)
                     /locus_tag="RJ259_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7366228.1"
                     /translation="MILELKQISKSFGSVKAINETSFKINEGEIFALIGPNGAGKTTL
                     FNIITGNYKPSSGSVEFLGERIDHLKPHKIVHLGIARTFQNIRLFSSMNVLENVLIGF
                     NKQMKYNIFEAFLHLGRFGKIEQVFKEKAYAILEELGIAEFAYEKATSLSYGQQRKVE
                     IARAMATQPRLLLLDEPAAGMNSSESDELAGLIFKLRKDYKISVLLIEHDMKFVNKLC
                     DRVLVLDYGKTIFEGKLCDAVNHKEVIAAYLGDFDANS"
     gene            complement(9943..10995)
                     /locus_tag="RJ259_000490"
     CDS             complement(9943..10995)
                     /locus_tag="RJ259_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HDV7366229.1"
                     /translation="MMVRIKVSHLIFLIASIIFIFISPYIFGDYGLNIVNQIAIFIIL
                     AVSYNLINGVTGQFSLEPNGFVAIGAYAAALVLLSADAKNDQFFLDGPSSFILAIHSN
                     SFILALIVAGICSSLLALILAFAVFRVRGDYLAIVTLGFGIIIKIAAINFPSITNGSR
                     GLVDIPQFSTIYWTGGIAIVAVILILNIVYSKYGRAMKAIRDDEDAASAMGINTFWIK
                     TLAFSTSAFLEGVGGGLLACLLTTVSPTQFDFLLTFQLLIIIVLGGLGSTTGAIIGAI
                     LVIGGSEWLRFLDELNIKIDSLNLDIQSTPGLRMVVFSIVLILVMLFARKGIMGYYEL
                     SDVIRGIKKRFKRSKK"
     gene            complement(10995..11891)
                     /locus_tag="RJ259_000491"
     CDS             complement(10995..11891)
                     /locus_tag="RJ259_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HDV7366230.1"
                     /translation="MDSTLFLQQLVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDI
                     MMVGAYAALFCMTNLNVPFLGALSLAMIFAACVGIATDRIAYKPLRQAPRISLLITAI
                     GISFFLQNLFNMLFTSTPRTFTPPSYFEESVNFGGVITTYGSLMVPALTFVILIAVLW
                     ILYKSKYGIAIRALAFDIQTVNLMGIDANRIIAIVFALGSALAAVGGVFWAANYYSVE
                     PTMGTLIGLKAFAAAVLGGIGSVVGAVLGGLIIGFTEVVVVAFFPDLSGFKDAFAFIF
                     LVFILLFRPTGILGINFEKSRF"
     gene            complement(11910..13019)
                     /locus_tag="RJ259_000492"
     CDS             complement(11910..13019)
                     /locus_tag="RJ259_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDV7366231.1"
                     /translation="MKKSLILASILSLSLSAAEVKIGVVLPLSGATAAYGQSALEGIK
                     LANSMQSALSNGDKVSLAIIDTKGDKLESSSGANRLVSQDKVIGLIGEMVTANTLQVM
                     RVAEDNKIPLIAPAATGDRLLDKKIYSSRVCFMDSFQGSSLAKYVFSKLNYKSAVIVV
                     DQSTDYSLGLAKAFEKQYKSNGGQILRILRVNSGDKDFRAIVAQVKSLNPEFIFLPLY
                     YSEASLFARQSKLAGLNIPMGSADGVADQTFISLAGDASEGYIFTDSFDANNPTTKLS
                     KEFISVYEKAKGTKEVPNFSAMGADAYFVMLNAMNACVENLTSKCVNEKIHQTKNYQG
                     VSGVISIDQTGNATRSVVVKEIKNQKQNYKDIINP"
     gene            complement(13041..14156)
                     /locus_tag="RJ259_000493"
     CDS             complement(13041..14156)
                     /locus_tag="RJ259_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDV7366232.1"
                     /translation="MKKLTLTLSVLTMVNCLYAKDINIGVVLPLTGTVAAYGQDVFNG
                     IELANKLQPKLSNGDVIKLITIDTKGDKLETSNGVNRLIATDKVLGIIGEATTPNTIQ
                     AISIAEEKKIPLIAPVASGDKLLDKKKYASRVCFKDSFQGDKFATYVSKDLGLKNAVI
                     IIDQSNVYSLGLARAFENSFKNNGGKIIKKLVINSGDKDFRAVVSQLKSLNPDFVYMP
                     IYHPEAALIARQARQIGFDKLLAAGDGVNNQTFIDLGGSAVNGVIFTDSFDYNSPSTQ
                     LGKDFVAAYEKVKGTKELPAFSAMGADAYFVMLNAMNACVDNLSSECINSKIHQTKDF
                     QAVGGVISIDESGNAIRSVVIKEIQNQKQNYKTIINP"
     gene            complement(14187..14621)
                     /locus_tag="RJ259_000494"
     CDS             complement(14187..14621)
                     /locus_tag="RJ259_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDV7366233.1"
                     /translation="MIARWLFISSIFVVALFGINLKSFFTYTFDANKQYDMEKAKALY
                     FQNKCNTCHGDNAEKSVIGSRILKDMSPEDIKGALIGYTLDSSSSTTASQMAFYARNL
                     SHEDIDNIIAYIKGGNFALDLQVKDLLEEEPAQKTKHNIFLK"
     gene            complement(14630..14821)
                     /locus_tag="RJ259_000495"
     CDS             complement(14630..14821)
                     /locus_tag="RJ259_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mini-MOMP protein"
                     /protein_id="HDV7366234.1"
                     /translation="MKKIFLIGMILNHFVFAAPLDEVFKDIEVSGTVRYRYDIKKEKK
                     YNKKTHRYQNKTQTEITIK"
     gene            complement(14874..15380)
                     /locus_tag="RJ259_000496"
     CDS             complement(14874..15380)
                     /locus_tag="RJ259_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqhA family protein"
                     /protein_id="HDV7366235.1"
                     /translation="MLEKIFESLLVRSRIVTILPVIFGLIGAFVLFFIASYDVLKVIF
                     YTYNYFFDAGSNVDLHEDVVALIIGAVDLYLMALVLFIFSFGVYELFISEIEEFKQTK
                     QSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALCVGL
                     YFLHKGGH"
     gene            complement(15389..16420)
                     /locus_tag="RJ259_000497"
     CDS             complement(15389..16420)
                     /locus_tag="RJ259_000497"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HDV7366236.1"
                     /translation="MSKKQKIAIVGATGAVGEELLNVLDELDFPVESILPLASAKSVG
                     SEVEFKGKAYKVKELTENVFKENPIDIAFFSAGGSVSEKYAKFAVESGAVVIDNTSHF
                     RMEKDVPLVVPECNPEDIKDWKKTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTY
                     QAASGAGKEGMQELVEAMQSFFAFKLDEFEPQTFPYTLALNLIPQIDVFMDNDYTKEE
                     LKMVNETQKILHKNLEVSATCVRVPVLRSHSEAITMHFEKEIDVKKAKEILEKAPSVI
                     VIDDPKNKKYPMPLMTSDTNETYVGRIRADVYDKKILHLWCVADQIRVGAATNAVRIA
                     QKWLELKNK"
     gene            complement(16420..17721)
                     /gene="flgR"
                     /locus_tag="RJ259_000498"
     CDS             complement(16420..17721)
                     /gene="flgR"
                     /locus_tag="RJ259_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system response
                     regulator"
                     /protein_id="HDV7366237.1"
                     /translation="MNLVIVEDDINMRKSLEIALAEYEEFNIKSYKSATEALKKIDDN
                     TDLIITDINMPGIDGIEFVKACENKYDFIIMTGNATLSRAIEAVRLGVKDFLTKPFDV
                     DTLVEAIKRAKIIREKTADKKSKKNEKKEENKDFFSTSPNLEKTLNLSQKAAKTDASV
                     MFFGESGVGKEVFSRYIHTHSKRSNKPFIAINMAAIPANLIESELFGFEKGAFTDANA
                     TKIGLFEMANEGTLFLDEIGEMPYEIQAKLLRALQEKEITRLGSTKSIKIDVRIISAT
                     NANLDEKIKNGEFRSDLYYRLNTVPINIPPLRERKEEILGIAQKVLEDTCKEYDFKEK
                     QLSQEAKNALLEYDFPGNIRELISVVQRACILSENDEISSEDLFLEARSIKKDVKNLE
                     KELICEVLLSVDYDKDQASQILGIDIKILNEKIKKYQIKDK"
     gene            complement(17778..18227)
                     /gene="flgQ"
                     /locus_tag="RJ259_000499"
     CDS             complement(17778..18227)
                     /gene="flgQ"
                     /locus_tag="RJ259_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FlgQ"
                     /protein_id="HDV7366238.1"
                     /translation="MERIVCLLIFLSFKLFAQDEFIFWAELSSKNFILFHQNQNLSLA
                     MTQSENVEEQWVCEISYSDQDLKVLPRTSLGLIDDNMPKTIKFNFLNSHKDELSDCFI
                     GARISVKDIVNTDLLRAQSETYVKILPLRFTVEFGEQNAIIYYLKKK"
     gene            complement(18203..18718)
                     /gene="flgP"
                     /locus_tag="RJ259_000500"
     CDS             complement(18203..18718)
                     /gene="flgP"
                     /locus_tag="RJ259_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly lipoprotein FlgP"
                     /protein_id="HDV7366239.1"
                     /translation="MKKNYFMLAIAGIFAGCVPSANSATKNSSANSTAPSQDVIVQKV
                     DKDDVRDIIREEKMLAPDASETELSFTAVGEGIAPMNTVSTAQALALAKRAAITDAYR
                     QLASKLYGVKVNGKDTVKDAMLRSSTITAQVNGLIKNASIIDENFNQGLYRVNLELKI
                     DADKWKELFAY"
     gene            complement(18782..21373)
                     /gene="gyrA"
                     /locus_tag="RJ259_000501"
     CDS             complement(18782..21373)
                     /gene="gyrA"
                     /locus_tag="RJ259_000501"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HDV7366240.1"
                     /translation="MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGL
                     KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMR
                     YPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPD
                     VLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGP
                     DFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKKTNKDVIVIDELPYQTNKARLIE
                     QIAELVKERQIEGISEVRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVI
                     MLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNID
                     EVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMK
                     EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVV
                     TITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQL
                     YWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKR
                     TNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE
                     NLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAV
                     VIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETM
                     DLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVVSIAKCPKEENDEDELSDE
                     NFGLDLQ"
     gene            complement(21414..21989)
                     /locus_tag="RJ259_000502"
     CDS             complement(21414..21989)
                     /locus_tag="RJ259_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HDV7366241.1"
                     /translation="MRCINCGAFALLCFCELCELELSEFSLNVRKLDNNFKVYSFYKY
                     HEIQHLLHSKHYFYGYFVYKMLAKLSFAKFKDFFDPRMTINVIALDDKVEDMLYSHSA
                     ILARYLKTKFVKPVFNVLKAQNSVKYSGKSLEFRQKHKRNYKLLKTIHEPVILVDDIV
                     TTGSSLLEAKKVLEENKISVLFALVLADAKV"
     gene            complement(21986..22630)
                     /locus_tag="RJ259_000503"
     CDS             complement(21986..22630)
                     /locus_tag="RJ259_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366242.1"
                     /translation="MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPG
                     GFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLF
                     VDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKL
                     VGVLQVSDINKNKKFTIRTKQDVQGFDDLKETTFYTHLLIKQMANKAASLISEL"
     gene            complement(22707..>24480)
                     /gene="lepA"
                     /locus_tag="RJ259_000504"
     CDS             complement(22707..>24480)
                     /gene="lepA"
                     /locus_tag="RJ259_000504"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HDV7366243.1"
                     /translation="FSIIAHIDHGKSTLADRIISECGAISDRQMSSQVMDTMDIEKER
                     GITIKAQSVRLNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLVVDASQGVE
                     AQTIANVYIALENNLEIIPVINKIDLPNADVEKVKHEIEHIIGIDCKDAICVSAKTGV
                     GIKELIETIITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGSIAKNDEVLV
                     MSTDKKHIVQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTITLVKNKAK
                     EAIGGFEKAKAFVFAGLYPIETDKFEDLRDALDKLKLNDSSITYEPETSLALGFGFRV
                     GFLGLLHMEVIKERLEREFNLDLIATAPTVTYEIYQTDGELIKIQNPSELPPVNKIDH
                     IKEPYVKATIITPSEFLGNLITLLNRKRGVQVKMDYITPERVLLEYDVPLNEIVMDFY
                     DKLKSLTKGYASFDYEPIEFRVGDLVKLDIKVAGENVDALSIIVPNEKAQSKGRELVS
                     AMKEIVPRQLFEVAIQASIGNKIIARETVKSMGKNVTAKCYGGDITRKRKLLEKQKEG
                     KKRMKAIGKVNLPQEAFLSVLKID"
BASE COUNT         8517 a         4528 c         2958 g         8477 t
ORIGIN      
        1 aatatcggaa gtctttttta aattaagatt taaaatgatt aattcatcat ttatatcttg
       61 atattttata aaattttcat aacgtatatt ccaaatacta gcactgatta cagtatttaa
      121 agtattaatt ttctcattta tattattaat aatagtccga tttacatcac caaaagcaaa
      181 aacaacaaaa aaggttaaaa taataatttt tttcattgga attctcttaa agttgcaatt
      241 atatcttctt tagaaatatc accttttatc aaacccttac ccaaaggact agcaagaaca
      301 aaattgattt ttttattaga gcttttttta tccatgaaaa aagcttcata aaattcatct
      361 acattgttga ttttatatga tattggcaaa ccgaatttaa gtaaaatatc ttttattctt
      421 tgactttgca ttttatccaa aagccctaaa tttaaagcca attgatttgc cataaccata
      481 cctatagcca ccgcttctcc gtgtaaataa agcttataat ctgtaaaatt ttctataaca
      541 tgagcaaaag tatgaccata atttaaaagc attctaagcc ttgattcttt ttcatcttgt
      601 tcaacaaccc ttgatttaag ctctatgctt tttgctataa tctgagtaaa aatttcattc
      661 tcacaagtag catttaagaa acttttttca tcaatttttt ctataaaatc aagtatacta
      721 taatcaaaca ttgctgccat tttaataaat tcagccatgc ctgcagcaag ttctctagag
      781 ctcaaagtct ttaaaaaaaa actctcacaa tatacagctt taggttgata aaaagtgcca
      841 ataagatttt taccaaaatt attattaaca cctgtttttc cacctactgc tgcatcaaca
      901 caagctaaaa gtgtagtagg aatatttata aaatcaatac ctctttgata aatactagca
      961 gcaaatccgc ccatatcact aatcacgcca ccaccaaaac ttataagcac gctttttcta
     1021 tccaatttag aattaaacat ttggtttaaa atttcttcca tggtgcttaa atttttatat
     1081 tcttcaccat ctttcacagt ggcaataaaa atttcttttg ccttaatttt agaaagtaat
     1141 gttttcaaat gaagacctga aatcttagga tttgaaagta taaaaacctt actatcaaat
     1201 tctaattctt caagttcatc aatataaacc ttataagcat tttcttttaa cttaacttct
     1261 acttgcattg aactactctt tttgcattta ttttatcaca tttaattaat tatttattct
     1321 actggtatga aaagttggta attttgtctc attttgtaat aatgcctatt taaatttgta
     1381 cttaaatttc tggcaaaatc tctatttagt aattcttttt gaaaactcac aaattgtaac
     1441 aaatcttcgc gatattgcaa atttaaaaga gggttttcat catttttatt aataatttgt
     1501 atatttttat cataaagctt agataaactt ctaaaatact cctccatatc tgtagtattt
     1561 tgagaatttg gattataata atataaaata actccaaaat caagctgttt acttaaatca
     1621 gtaatgacat ttgcattgtt ttcaagttca ctctcatcag cacttaaaat aatcgcttct
     1681 ttaagctcat caaaagaagc ttcacccacc ttcataatag gaatttttaa atcaaaaaaa
     1741 gcttgttttt ctttctcaaa attttttata tcagttacaa ctaatcctat atcattattt
     1801 tgcaaccaca tggaaatttg tttaaaatcc gtgttgaaat aatcaaaaaa cacaccttct
     1861 ttatcctcag aaagtttttt taatttttca tacattaccc ctaatttagg attgataaca
     1921 tgtataaaaa atctttttgc attgcttttt tgagttaatt ttaaagtagt atcaagcact
     1981 ctttcttgca tattttgatt catatttttc atatcaatta aagcaaaaac attacttcca
     2041 aaaggcatag gaaattgccc tgctttgcct cttatattat gaaaaatact ttgtaaaaca
     2101 acaggatccc caacgatcaa aatgctatca tttggctcta gaacaaaaga tggttttaca
     2161 aaataaattt tagaatttct ataaataagg actatgcgcc accttttttg ttgtattgaa
     2221 cttatgtgcc tataagcaaa aatagaccct gctggaattt ttacttccat aatctctcca
     2281 actccaagtc ctatatactg agctgttaaa gcaatatctg gtaaaaaatc cataaatcta
     2341 cggcttaaag tcattctagc atcagctaaa tttgcatgag tatcattaac acttaacccc
     2401 caaaaatcca ttatttctat ttctaaattt ggatttaaag aacgcaaagc ctcataactt
     2461 tttttagttt caaattcatc ttgcatataa ataaaagcct gtttaaaatc cttactcata
     2521 atattttcaa gacgcgctgt gcttgtagga tcaaaataat gcaagtcaat atactcgcta
     2581 gaaatattta agttattttt ttcactattt tgacacacta ctgtaaaaaa gtaacctaag
     2641 cctttttcaa aacaaagcct ttctaagaaa tgctttgcta aaataccatc tattataatt
     2701 aaaatattat tcattttaaa ctccaaaaag gaaattataa caaatggaat ttaaattaaa
     2761 gcataaagat ggaatggcaa gggtttgtga aatcactacc gcacacagca cttttttaac
     2821 ccctgttttt atgcctgttg gcacagtagg agcggttaaa agtcttgatg ctaatgatat
     2881 gaaaaatgag cttgatgcaa aaattatttt agcaaatacc tatcacatgt acttgcgtcc
     2941 aacttccaaa gtagtaaaag attttggagg tttacatgga tttacgaaat ttgatagaag
     3001 ttttttaacc gatagtggtg gttttcaagc tttttcttta agtaaaaatt ccaaacattt
     3061 taatgaaggc atagaattta aaagtcacat tgatggaagt cgtcatcttt ttactccaaa
     3121 aagtgtttta gatactcaat atgattttaa ctctgatatt atgatgattt tagatgattt
     3181 agtagcctta cccgcaacca aagaaaggat taaaatttct gttgatcgca ctatactttg
     3241 ggcaaaagaa gccattgctt atcataaaaa tatgcaaaat aaaggtatag gcatagggca
     3301 aaatattttt ggtattatcc aaggtggtac agattatgaa gaaagaaagc gttgtgcttt
     3361 aagtttaaac gaaatgccat tcgatggttt agctataggt gggcttagcg tgggcgaaga
     3421 aaacgccttg atgtatgaaa cagtacaaaa cttaaaccct tatctagatg aaaatcgtcc
     3481 aagatattta atgggtgtag gaacgcctga agatttagta gaaaatgttg agcgaggagt
     3541 agatatgttt gactgcgtga tgccaactag aaatgcaaga aatggaacat ttttcacaag
     3601 ttttggaaaa tttaatatta aaaaagcaga atttatcaac gatcatgaag ctatagatcc
     3661 tatttgctca tgttatactt gtcgtaattt ttcaaggggt tatttgaacc atctttttaa
     3721 agctaaagaa cttacttttt ttcgcttggc aagtttgcac aatctacatt attatcttga
     3781 acttgcaaga aagatgcgtg aagcaatttt gaacaattct tttacgcaat ttaaaagaaa
     3841 tttttatcac ttaagaggca aataaaatgc tagaactaca tgaaaatcta aaaaaaatcc
     3901 tgcaagcaaa gaatttagaa actttctata gtgaaattta tggacaaaaa atttttgttt
     3961 acgtgggatt aaatttggaa acttggcttt ttaatgatga aaaaatttat aaacttcaag
     4021 atgaagaatt taagctttct agcatagaag aattttcaaa ttttattaaa tccattttag
     4081 aagattttaa agtacaaaat actcattttc aaaacctttt agaacacaaa gaaggtatta
     4141 tcttaaaagg tggttttgtt aaaaattttt acaaaaaatc ctttgtgtta agacaaaaaa
     4201 tcaacaaaaa tctaaagcaa attaatcttc taagcgaagc tttcaatctt ttgcttagtg
     4261 aacaagcaca atataaaaaa catttaaaaa ttttaaattt atccatcagc atcttaagta
     4321 aaaacaccaa agaacatcta gcaagaattg atactcttta tacattaaca aatgcaatta
     4381 aaaatgaaaa aatgaataaa agtatttatc ttttaagtat actttcttct attttcttgc
     4441 ctttaaattt gatcgtagga ttttttggaa tgaatactaa taatcttttt ttcaaagata
     4501 gcccttatgg tacactttat attttttctt tgatttgctg tattttgatt gtaggtttta
     4561 tattttatta ttcaaaaaag actaaagaat ttgatttaga tgaaggtaaa aaagctaaaa
     4621 aacaaacaaa ataagcaaaa ttttgcttat tttaagaata tttatatata attttaactt
     4681 atttttgcgc tcatagctca gctggataga gcatttgatt gcggttcaaa aggccagagg
     4741 ttcgaatcct cttgagcgca ccatattatt tatcttcttt aatttttctt ttagctaatc
     4801 ccatatgctc gtaagcatca atttcttttt tgtaagatcc ataaattttc ttaagttctt
     4861 tatttaagta acttactgtt tgtgcacttg cattaatatt tgcagccaaa gcagaaacaa
     4921 attctagttt cttttttgct gcttcatcta attctttaga agtttttgaa ccaagtttat
     4981 gtgtctgcac ataaagtttg gcaagttctt ttaattcaat atccgttagt ttaacatcgg
     5041 aagcagcaat tatcatttta tctaagtctg tatcaaattt tttagtcttt tcagctacat
     5101 gctgcttttg gctagttttt tgctttttaa ttgttttttt gccatcactt gtaataagat
     5161 aagcaatcac gcctaaaaac aataaaagcg ctaaagcagc acaaaaaata accaaaaaaa
     5221 tatggttcat ttaaagtttg cccacaaaat ttcgcttcct tcttgcaaaa aaagctaaaa
     5281 ccaccatcaa tgcaaatccc caataaacat aattaggaat ttgagccgct tcgcctgcag
     5341 cgtaagaatg aagtcctgtt aaaaagtaat ttactccaaa ataagtcata ataataaccc
     5401 aataagcaaa catactccat aaagcaaaca caaattgatt acaatatttt ggaatcattc
     5461 taagatgcaa aattgctgca taaaccaaaa tgctaactaa agcccaagtt tccttagaat
     5521 cccaactcca atatctcccc caactttcat ttgcccaaat tgctcctaaa aaatttccta
     5581 cagtaagcaa acaaagtcca aaaatcattg ccatttcatt aattcttgta gcctctgtaa
     5641 tatttctcaa aatattaaga ttatattttc catctttctt aagaaaacac attaagaaca
     5701 atgtaaagat accaagtaag gcacaaagtc ctaaaaatcc ataactagca gtaataacag
     5761 atacatgaat actaagccaa taagaattaa gcacaggaac aagatttgta atttgcggat
     5821 tcatttcgct taaatgcgca accattaata caacaccaga taaaatagaa gttaatgaca
     5881 aggctatagg actttttctg gagaaaaata tacccgacaa agacaatgcc caagctatat
     5941 acaccatact ttcatagcca ttactccatg gagcatgacc tgataaataa gcacgaagtc
     6001 caagacctac tgtatgaatt acaaaagcta aaacatttaa aacatatacc actttaaata
     6061 taaaagagat ttttaaattc ggtacgacca ttttagaaaa aacaagaatc aagagtaaaa
     6121 aacccgcaat taaatataca ggagcgagtt taacgaaaat ttcagcctta ttagaaaaaa
     6181 tttccatttc aaccttggtt ttactaggca tgactttata tcctattttt tcttgatatt
     6241 ctttgataaa tttcaagcct tcatcagctc taatccaatt accatcttta aaagcatttt
     6301 ccacggcact aaaataattc tgtattaaag ccaaaacaat atgcccttca tcccccttaa
     6361 gagtagttac agcagaaaaa ggtgcaagcc aaacattatt tggattattt tgaacaggaa
     6421 taaatttaaa taattcacca ctaaaaacta aatttacaac attagctctt tcatctagtt
     6481 ttataatttc cttatcaaaa actcctcttg catttgggtt tttacgattt gcattttcaa
     6541 catatttttg aagtttatag cggttattct catcaaaaaa atctttataa gcaatatatt
     6601 tagcactagg aatttctaaa atatttgcaa tagcatcacg aactgcttga ttttgtggca
     6661 ttaaaataaa aggttccaat tgccatttat ctacatcaac gagcatggaa agcataacag
     6721 cgttagaatt ttgaccctta tagctatcac tttgatgaat tttttctaaa atttctcttg
     6781 atagcgtatc aaaaggcacc attcttccat ctgctgattt ttgaactatt aaagtggcaa
     6841 gagctttagc atgattagta tttaccacag gtaaggtcga atttaaatct tgagcaaaag
     6901 tcttttcaga accaaaagat aacaataaaa taaaaataat cacacttgta tgttttaaag
     6961 tgtctttatt aattaatctt gccaaagttc taaatctaga atgtggattt aaaaaattca
     7021 taaacattcc aagacaaagc agaaaataac ctatataagt tggtattttg cccggatctt
     7081 tatttacaga taaaacagtc cctttttcat cttgatcata agaactttga taaaatctat
     7141 agccatcata atctaaaaca ttattcataa aaattctata atcaaaattt tcattattat
     7201 tttttacggt aatttcactt gcataagaag ctggagacat agaacctgga taacgatcta
     7261 atacaaaatc tcttaaataa atatcaaaag gcaattgttc ataagaaagc gcccaagaaa
     7321 taaagaattt ttgatctgca agttctatca taataggttt attatattca aaaatataaa
     7381 attctttact ttcattttta tagcttaatt ctaattttaa agcattagag ccagttaatt
     7441 ctaagttttt attctcattg cttaaggcaa aatctttaaa atgcaataat aaagaatttt
     7501 tccaattttg aggctcgcca aaagtagaaa tcaacatagt tctacccact tctaaccaag
     7561 cagatttaaa ccataaccaa aaactttcat cttgaggtct attggaacct tctaaagctt
     7621 cttgcgcatg caaagaagca gctttaacta caaaactaat atcattaatt tcataaagtc
     7681 ttctttcctt agcatttgcc ttttctccaa ttttaaggtc taaattttgt ccatctagca
     7741 tgcttagaaa atgtaagttt tcacttgaac ttaaagttaa attttcatca atttttacaa
     7801 aaggtgcttt aacattatca ttcataaaag caaagttaac cccttctata ttcttaactt
     7861 cacctttttc aaatttaaca tcaacacctt gagatccttt ttgagaaagc atcaaaacca
     7921 ataaaggatc agaattatta ttttctttat aagtataatg agcatttaag attaaatctt
     7981 tatattttaa tacagcttga tcatcaccta aattaagttt tagtttaaaa gaattagcaa
     8041 aaggcaaatt tcctatataa cgatcattaa ccgcactata gcgttctcca tcttttatag
     8101 cagaaatacg caaagaagtc ttagaacttt ctataagtga attttgagta tgctctctaa
     8161 taggtaaaat accttcaaaa ccagcatatc ttgtcattgc agaacccact aaaataaata
     8221 aaaaagaaat atgaaaaatc attaaaggta attttttaag cccaaacatt ttataacgaa
     8281 acatcccgca tagtaaatta ataccaagta aaagttgtat atattcaaac caaaaagtat
     8341 cataaaccat tgcccaagcc gtaggggttc cataagcact ttcaataaaa gttgccaaag
     8401 cacaaaaaag cgcaaaaagc aaaaacaata caaccgaaac tcttaaatcc cctatgcttt
     8461 ttattatatt tttcattctt tttcctttaa attttaaagc cctaaatatt tctttctaat
     8521 ctcatcatca cctattaaat ttttagcctc gttttccatt acaatgcgac cattttccaa
     8581 aacataagca taatcactta tttttaatgc agaataagca ttttgctcta ccaaaagaat
     8641 agttataccc tcttctttta aacgcacaat aatatcaaaa acttcaccca caatctttgg
     8701 agcaagtccc aaagaaggct catccaacat caaaagtttt ggttcactca ttaaagccct
     8761 tgaaatcgca agcatttgcg cttcccctcc actcaatgtt ccagctaaag catgcttttt
     8821 acttgcaagt cttggaaaaa gtttatacat ttgctctctt aaatgctcat aattttcagc
     8881 attattaaaa gcacctattt ttaaattttc ctctacgctt aaattaataa aaacacgcct
     8941 tccttcagga actaaagcta tacctttttg aactaaagta tgagttaaat gccttttagt
     9001 atcataacct aagaaattaa cctcaccagt tcttttaact gagtttaaaa gcgcatttaa
     9061 agttgaagtt ttacctgctc catttgaacc tataagagaa acaatatgac ctgtttccac
     9121 tttaaaatca atccctttaa cagcttcaat taatccataa taaacatgca aatctttaac
     9181 tattagcatc aaaatcccct aaatacgcag caattacttc tttatgattt acagcatcgc
     9241 aaagtttacc ttcaaaaatt gtttttccat aatcaagtac caatacgcga tcacacaatt
     9301 tatttacaaa tttcatatca tgttctataa gcaaaacgct aattttataa tcttttcgta
     9361 atttaaaaat gagcccagca agttcatcac tctcagagct attcatccca gcggctggct
     9421 catcaagcaa taataatctt ggttgagtag ccattgctct tgcaatctca acttttcttt
     9481 gttgtccata actcaagcta gtagcctttt cataggcaaa ttctgcaata ccaagttctt
     9541 ctaatattgc ataagccttc tctttaaata cttgttctat ttttccaaaa cgccctaaat
     9601 gcaaaaaggc ttcaaaaata ttatatttca tttgtttatt aaaaccaata agaacatttt
     9661 caagcacatt catgcttgaa aaaagcctaa tattttgaaa tgttctagct attcctaaat
     9721 gcacaatctt atgaggtttt aagtgatcaa ttctttctcc tagaaattca accgaacctg
     9781 aactaggttt atagttacct gttataatat taaaaagagt tgttttgcca gccccattag
     9841 gtccaattaa agcaaaaatt tcaccctcat tgattttaaa agaagtttca ttaatagcct
     9901 taacactacc aaaacttttt gaaatttgtt ttaattccaa aatcattttt tgctcctttt
     9961 aaaacgcttt ttaatccctc taatcacatc actcaactca taataaccca ttatgccttt
    10021 tcttgcaaaa agcattacta aaatcagaac aatagaaaaa acaaccattc taagccctgg
    10081 cgttgattgg atatcaagat ttaaagaatc tatttttata tttaactcat ctaaaaatct
    10141 aagccactca cttccaccaa taaccaatat cgcacctata atagcacctg tagtagaacc
    10201 aagtccacct aaaacaataa taatcaaaag ctgaaaagta agtaaaaaat caaattgagt
    10261 tggagatacg gtagtcaaca gacaagctaa aagtccgcca cctacacctt ctaaaaatgc
    10321 tgaagtgcta aaagctaaag tttttatcca aaaagtattt attcccatag cgcttgcagc
    10381 atcttcatca tctcttatag ccttcattgc acgaccatat ttagaataaa ctatatttaa
    10441 aattaaaata accgctacaa tagcaatacc acctgtccaa tagatcgtgg aaaattgtgg
    10501 aatatctacc agccctcttg agccattagt aatagaagga aaattaatag cagctatttt
    10561 aataattatt ccaaagccta aagttacaat agccaaataa tcccctctca cgcgaaatac
    10621 agcaaaagcc aaaatcaggg caagtaaaga tgaacaaatt ccagccacaa ttaaagctag
    10681 aataaaggaa tttgaatgga tagctaaaat aaaagaacta ggaccatcta aaaaaaactg
    10741 atcatttttt gcatcagcac ttaaaagaac taaagcagcc gcataagctc caatcgcaac
    10801 aaatccattg ggttctagtg aaaattgtcc agttacacca ttaataagat tgtaactcac
    10861 agccaaaata ataaaaatag caatttgatt aacaatgttt aatccataat ccccaaaaat
    10921 ataaggagaa atgaaaataa aaataattga agcaattaaa aagattaaat gtgaaacctt
    10981 aattctaacc atcattaaaa cctactcttt tcaaaattta tacctaaaat tcccgtaggc
    11041 ctaaataaca atataaacac caaaaaaata aaagcaaatg catctttaaa gcctgataaa
    11101 tctggaaaaa aagccacaac aacaacttca gtaaatccta taataagtcc acccaaaact
    11161 gcacctacta cagaacctat acctcctaaa actgcagcag caaaagcttt taaacctatt
    11221 aaagttccca tagtaggttc aacagagtaa taatttgcag cccaaaaaac acccccaact
    11281 gctgccaaag ctgaacctag ggcaaaaact atagcaataa tacgatttgc atctataccc
    11341 attaaattta ctgtttgtat atcaaatgcc aaagcacgaa tagctatacc atatttgctt
    11401 ttatacaaaa tccataacac tgctattaaa ataacaaatg taagagcagg aaccattaaa
    11461 gaaccataag ttgttatcac tccaccaaaa ttaacacttt cctcaaaata acttggcggt
    11521 gtaaaagttc taggtgttga agtaaaaagc atattaaaaa gattttgcaa gaaaaaacta
    11581 ataccgattg ctgtaatcaa caatgaaatt ctaggagcct gtcttaaagg tttataagcg
    11641 attctatctg tagctattcc aacacaagca gcaaaaatca ttgctaaaga caaagctcct
    11701 agaaaaggaa catttagatt agtcatgcaa aaaagagccg cataagcacc aaccatcata
    11761 atatcgccgt gagcaaaatt aataagtctt aacacaccat aaaccatcgt atagccaaca
    11821 gcaataagag catacatact gcccaaacta agtccattaa caagttgttg taaaaataaa
    11881 gtagaatcca taatctttct atttttcctt taaggattga taatatcttt ataattttgc
    11941 ttctgatttt taatttcttt aaccactaca gaacgagttg catttcctgt ttgatcaata
    12001 ctgataacac cagaaacacc ttgataattt ttagtttggt gaattttttc attgacacac
    12061 ttactagtaa gattttcaac gcaagcattc atagcattta gcattacaaa atacgcatca
    12121 gcacccatag ccgaaaaatt tggaacttct tttgttcctt tagctttttc ataaacactg
    12181 ataaattctt tgcttaattt tgtagttgga ttattagcat caaaactatc tgtgaaaata
    12241 taaccctcgc ttgcatctcc agctaaacta ataaaagttt gatcagcaac tccatctgca
    12301 gaacccatag gaatatttaa acctgcgagt tttgattgtc ttgcaaataa agaagcttcg
    12361 ctataataaa gcggtaaaaa aataaattct ggatttaaac ttttaacttg agctacaata
    12421 gctctaaaat ctttatcacc tgaattaact cttaaaattc taagaatttg accaccatta
    12481 gacttgtact gtttttcaaa agcttttgct aaacctaagg aatagtcagt gctttgatct
    12541 actacaataa cagcactttt gtaattaagt tttgaaaaaa catattttgc taaagatgaa
    12601 ccttgaaaac tgtccataaa acatactcga gaagaatata tttttttatc aagcaatcta
    12661 tcaccagttg cagcaggagc gatcaatgga attttattat cttctgctac gcgcataact
    12721 tgcaatgtat tagcagtaac catttcccct ataaggccta taactttatc ttgagaaact
    12781 aaacgatttg ctccactcga agattctaat ttatcacctt tagtatcaat aatagcaaga
    12841 gaaaccttat ctccattact taaagctgat tgcattgaat ttgcaagttt aatcccttct
    12901 agtgcgcttt gtccatatgc tgcagtagct ccgctaagcg gtaaaacaac tcctattttg
    12961 acttccgcag cacttaaact taaacttaga atacttgcta aaattaaact ttttttcatt
    13021 ctctaccttt attttagtaa ttatggattt ataattgttt tataattttg tttttgattt
    13081 tgaatttctt taatcacaac agaacgaatg gcattaccgc tttcatctat gctaatcaca
    13141 ccaccaacag cttgaaaatc tttagtttga tgaattttgc tattaataca ttcgctgcta
    13201 agattatcaa cgcaagcatt catagcattt aacattacaa aatacgcatc agcccccata
    13261 gccgaaaatg ctggaagttc ttttgttcct ttaactttct cataagctgc aacaaaatct
    13321 tttcctaatt gtgtagatgg actgttataa tcaaaactat cagtgaaaat tactccatta
    13381 acagcacttc cgccaagatc tataaaagtt tgattgttaa caccatctcc tgctgctaaa
    13441 agtttatcaa aaccaatttg tcttgcttgt ctcgcaatta aagcagcttc aggatgataa
    13501 ataggcatat aaacaaaatc aggatttaaa ctcttaagtt gagaaaccac agctctaaaa
    13561 tctttatctc ctgaattaat aacaagtttt tttataattt tcccaccatt attcttaaaa
    13621 gaattttcaa aagctcttgc caaacctaaa gaataaacat tgctttgatc tatgatgata
    13681 acagcatttt taagtcctaa atccttagat acataagtag caaatttatc tccttgaaaa
    13741 ctatctttaa aacaaactct acttgcatat ttctttttat ctagcaattt atctccagat
    13801 gccactggag ctattagggg aatttttttc tcttctgcta tagaaatagc ttgaatggta
    13861 tttggagttg tagcttcacc aataatccca aggactttat ctgttgctat taaacgatta
    13921 actccatttg aagtttcaag cttatctcct tttgtatcta ttgtgataag tttaataaca
    13981 tctccatttg aaagttttgg ctgtagctta ttagccagtt caattccgtt aaaaacatct
    14041 tgcccataag ctgccacagt tccagttaaa ggtaaaacta ctcctatatt aatatcctta
    14101 gcatataagc aatttaccat agttaaaaca cttaaagtta aagttagttt tttcatagta
    14161 ttccttttaa ttatagtttt tacattttat tttagaaata tattatgttt tgttttttgc
    14221 gcaggttctt cttcaagaag atcttttact tgcaaatcaa gcgcaaaatt tccaccttta
    14281 atataagcaa taatattatc tatatcctcg tggcttaaat ttctagcata aaaagccatt
    14341 tgagaagctg ttgtagaact gctactatca agagtataac ctatcaaagc tcctttaata
    14401 tcctcaggag acatatcttt taaaattcta gatcctataa cactcttttc agcattatct
    14461 ccatggcaag tattgcattt attttgaaaa tacaaagcct tcgctttttc catatcatat
    14521 tgcttatttg catcaaaggt ataagtaaaa aatgatttca agttaatacc aaaaagcgca
    14581 acaacaaata ttgaactaat aaacaaccag cgtgcaatca tgattttcct tattttattg
    14641 taatttctgt ttgtgtttta ttttgatatc tatgtgtttt tttgttgtat tttttttctt
    14701 ttttaatatc atagcgataa cgaacagtcc ctgaaacttc tatatcttta aagacttcat
    14761 ctaacggagc tgcaaaaaca aaatgattta aaatcatacc aattaaaaat atttttttca
    14821 tttttattct ttaaacacaa aaaaacgatt atatcaaaaa aagataatcc ttgttaatga
    14881 ccacctttgt gtaaaaaata aagtcctaca caaagagcta aaatcgatcc agcaagaaaa
    14941 gccatatcca caggagtagc aaatttcatc tgtaaaaccc tttgaaagaa atttaccact
    15001 aagaccataa tgataacttt tgcaagcttg tcttttaatt gatctaagct atgcacctct
    15061 aaaaccttgc tttgttttgt ttgtttaaat tcttctattt cgctgataaa aagctcataa
    15121 actccaaaag aaaaaataaa caaaactaaa gccataagat aaagatcaac agctcctata
    15181 attaaagcca ccacatcctc atgcaaatcg acattagaac ctgcatcaaa aaaataatta
    15241 taagtataaa atataacttt taaaacatca taacttgcaa taaaaaacaa tacaaaagct
    15301 ccaattaaac caaaaattac gggtaaaatt gtaacaatac gacttctaac aagtaaagat
    15361 tcaaatattt tctctaacat ttttttcctt atttattttt taattctaac catttttgcg
    15421 caatacgcac agcatttgtt gcagcaccta cacgaatttg atccgccaca caccaaagat
    15481 ggagtatttt tttatcatac acatcagcac gaattcttcc tacataagtt tcattagtat
    15541 cgctagtcat taagggcata gggtattttt tatttttagg atcatctatg acaataacac
    15601 ttggtgcttt ttctaaaatt tctttagctt tttttacatc tatttctttt tcaaaatgca
    15661 tagtaatggc ttcgctatga cttcttaaaa caggcactct tacacaagtt gccgaaactt
    15721 ctaaattttt atgtaaaatt ttttgagttt cattgaccat tttaagttct tctttagtgt
    15781 aatcattatc cataaaaaca tcaatttgtg gaataagatt aagtgccaaa gtataaggaa
    15841 aagtttgagg ttcaaattca tcaagtttaa aagcaaaaaa actttgcatg gcttcaacca
    15901 attcttgcat tccttctttt cctgctccac ttgcagcctg ataggtactt acatcaacac
    15961 gctttaaatt aaatgcatca tttaaaggtt ttaaaacttg caccatttgt atagtagaac
    16021 aatttggatt agcaataatc cctgtttttt tccaatcttt aatatcctca ggattgcatt
    16081 caggaaccac caaaggaaca tctttttcca ttctaaaatg acttgtatta tcaataacaa
    16141 cagcaccaga ttctactgca aatttagcat atttttcact cacacttcca cctgcgctaa
    16201 aaaaagcaat atcaatagga ttttctttaa atacattttc ggtaagttct ttgactttat
    16261 aagctttgcc tttaaattct acttcactac ctacactttt tgcacttgct aaaggtaaaa
    16321 tactttccac tgggaaatca agttcatcta aaacatttaa aagctcttcc ccaaccgcac
    16381 cagtagcacc cacaatggct attttttgtt tttttgacat tacttatcct ttatttgata
    16441 ttttttaatt ttttcattta aaatttttat atctatacct aaaatttgag aagcttgatc
    16501 cttgtcataa tctacactta aaagaacttc acaaatcaat tctttttcta aattctttac
    16561 atcttttttt atacttctag cttctaagaa caaatcttca cttgaaattt catcattttc
    16621 acttaaaata caagctcttt gtacaacgga tattaattct ctaatattac caggaaaatc
    16681 atattcaagt aaagcatttt tagcttcttg gctgagctgt ttttccttaa aatcatattc
    16741 tttacaagta tcttctaaaa ccttttgagc tatacctaaa atttcttctt tacgctctct
    16801 taaaggcggg atattaatag gaacagtgtt taaacgataa tataaatctg aacgaaattc
    16861 gccatttttt attttttcat ctaaatttgc attagttgca ctgataattc ttacatctat
    16921 tttgatgctt tttgtacttc caagtcgtgt gatttctttt tcttgcaaag ctcttaaaag
    16981 tttagcttga atttcataag gcatttcacc aatttcatct aaaaacaaag tgccctcatt
    17041 agccatttca aaaagcccta ttttagttgc attagcatca gtaaaagcac ctttttcaaa
    17101 accaaaaagc tcactttcaa tcaaatttgc aggaatggct gccatattaa tagcaataaa
    17161 aggcttatta gagcgtttag aatgggtgtg aatataacga gaaaatacct cttttcctac
    17221 tccactttct ccaaaaaaca ttacagaggc atcagtttta gccgcttttt gacttaaatt
    17281 taatgttttt tctaaattag gagaagttga aaaaaaatct ttattttctt cttttttttc
    17341 attttttttg ctttttttat cggctgtttt ttctcttatg attttagcac gcttaatagc
    17401 ctcgactaaa gtatcaacat caaaaggctt ggttaaaaaa tcttttactc ccaaacgaac
    17461 cgcttctata gcacggctta aagtagcatt tcctgtcata ataataaaat catatttatt
    17521 ttcacaggct ttaacaaatt ctatgccatc aattcctggc atattaatat ctgtaataat
    17581 caaatctgta ttatcatcta ttttttttaa agcttcagtg gcagatttat aagatttaat
    17641 attaaattct tcatactctg ctaatgcaat ttctaaggat ttgcgcatat taatatcatc
    17701 ttctactatg actaaattca tcctaagcct tttaaaaaat ttctactata gtatccaatt
    17761 tgcgcttaat tttgaattta ctttttttta agataataaa ttatcgcatt ttgttcgcca
    17821 aattctacgg taaaacgcaa gggtaaaatt ttaacataag tttcactttg agcacgtaat
    17881 aagtcagtat taacaatatc cttaacactg attctagctc ctataaagca atcgcttaat
    17941 tcatctttat gagaatttaa aaaattaaat ttaattgttt ttggcatatt atcatcaatc
    18001 aatcctaaag aagttcgagg taaaactttt aaatcttgat cactataaga aatttcacat
    18061 acccattgtt cttcaacatt ttcgctttgc gtcattgcta aggataaatt ttgattttga
    18121 tgaaagagaa tgaaattttt actagaaagc tctgcccaaa aaataaattc atcttgggca
    18181 aaaagcttaa agctaagaaa gattaataag caaacaattc tttccacttg tctgcatcga
    18241 ttttaagttc taagtttact ctataaagcc cttgattaaa attctcatca ataatacttg
    18301 cattttttat caaaccattt acttgcgcag taatagttga acttctaagc attgcatctt
    18361 ttacagtgtc tttaccattc actttcacac cataaagttt acttgcaagc tgtctgtaag
    18421 catctgtaat cgctgctctt tttgctaaag ctagagcttg agcagtagaa actgtattca
    18481 ttggagcaat tccttcacca actgctgtaa aactaagttc cgtttcgcta gcatctggag
    18541 ccaacatttt ttcttctctg ataatatcac gcacatcatc tttatcgact ttttgcacga
    18601 taacatcttg agatggagca gtgctatttg cacttgaatt tttagttgca ctgtttgcac
    18661 ttggtacaca accagcgaaa attcctgcta ttgctagcat aaaataattt tttttcattt
    18721 ttacaccttc aaaatattgt aattagtaaa ataaaaagca ataagcgttc caactttaaa
    18781 cttattgcaa atctaaacca aagttttcat cgcttaactc atcctcgtca ttttcctctt
    18841 taggacactt agcgatgcta accacctcgt cattttccac attaactaca atgacaccac
    18901 tcgtattacg ccctgctttt ctaatgcttt gcatatcaac acgtatcatc ttacctgaac
    18961 ttgtaagagc cattaaatcc atagtttcat ctactataac tacgctaata agatctttgg
    19021 ttttttctgt aagtttcata caaattacac ccttaccacc tctgctttgc aatctatatt
    19081 ctccagcatt ggtgcgtttt cctatacctt ttgcacttat gcttaaaatt tcttgctcat
    19141 cattttctat aacaactgca cctactaatt cgtcattttt ctctttaaac ttaatagccg
    19201 tcaccccacg acttacacgg ccgatttcac gcactttagc aagtgggaat ttgatacaca
    19261 tacctttttt ggttactgca aagagcattt taccttgtgt gcttacactt tcttcatttt
    19321 caagattttc atcatctaaa ttttcaattt cttgattttc taaattttct tcaccaccag
    19381 tggcaaaaat ttcatcttca tctctttgaa caataatagc agttaccaac tcatcatttt
    19441 catccaagtt gatcgctcta actcctacac ttctgatatt ttgatattca ctcaaatttg
    19501 tacgctttac aataccattt ttagtaaaga aacataaaga tttgctctca tcaaaatccg
    19561 tggttggaat aatagccatg attttttctt cagcttgtaa attgataaga tttaccactg
    19621 cttttccttt agccgttctt gagccttcag gaattttata aactttaagc caataaagct
    19681 gtccacgatc tgttacaaac ataagcgtat catgtgtatt tgccgtaaag aaactttcta
    19741 taaaatcatc atcataagtc gtaacggcta attttccttt tccacctcgt ttttgttttt
    19801 catattgttt actaggcaca cgcttaatat aaccacgatg tgtgatagtt acaaccatat
    19861 tttcattagg aatcaaatct tcaatatcaa tatcatcgta atcatcttca atttgagtaa
    19921 tacgtggcac atcaaattta cttctaattt cttttaattc atcgcgaatt aaattttcaa
    19981 gcaaggtttc actttttaaa atttcttcaa gtcttgcaat ttctttcatt aattctgcaa
    20041 gttcattttc gattttttct ctttcaagtc ctgttaaacg accaagtttc atatctaaaa
    20101 tagcattggc ttgaagctca ctaagaccaa atttagctac taaagaatct cttgcggtat
    20161 tattatcaga actattttta attaaagcaa tcacttcatc tatattatca agtgcaattt
    20221 taagaccttc taaaatatga gctcttgctc ttgccttttg aagttcaaaa atcgttcttc
    20281 taataataac tgtttttcta tgagttaaga aaagatttaa aagttccaac aaagagaaaa
    20341 ttttaggttc tttattatga attgccaaca taatcacacc aaaagtactt tccatagtgg
    20401 tagatttaaa tagattattt aaaacaattt cactcatagc ctcacgttta agctctataa
    20461 caacgcggat tccttcttta ttgctctcat ctcttacttc agatattcct tcaatttgcc
    20521 tttctttaac aagctctgca atctgctcta taagcctagc tttattggtt tgataaggaa
    20581 gctcatcgat aacaataaca tctttatttg tctttttttc aatatgagtt ttagctcgca
    20641 ctttcacgcg accacgccct gtgcgataag cttctataat acctttttta ccataaatta
    20701 ttccacctgt tggaaaatct ggacctttga taaactgcat aatctcttct aggcttgcat
    20761 ctttattatc aagcaaatat aaaagtccat ctatcaactc atttaaacta tgaggtggga
    20821 tgtttgtcgc catacctaca gctataccac ttgaaccatt taataataaa tttggaaccc
    20881 tagaaggtaa aacatcaggt tcgctttctg aaccatcata atttggaaca aaatcgaccg
    20941 tatctttatc tatatctttt aaaagctcat gagaaagttt actcattttt gcttcagtat
    21001 aacgcatcgc agcggcacta tcaccatcta tagatccaaa gttgccttgt cctgtaatac
    21061 ttggatatct catagaaaaa tcttgagcca ttctaaccaa agcatcataa actgctatat
    21121 ctccatgtgg gtgataacga cctataacag cacccactat acgggctgat ttgacaaaat
    21181 ctgttctact ttttgcctca tcattttgca tagcatataa aattcttcta tgaacaggct
    21241 ttaaaccatc tcttgcgtca ggcaaagcac gacctataat aacactcata gaatagtcta
    21301 aataactact ttttatagaa ttttctatat ctacaagttc aatatcagaa tctttgctaa
    21361 aaatattctc cataaaaatc cttctattag ttcaaagttt tgattatagc atattaaact
    21421 tttgcatcag ctaaaacaag agcaaaaagt acagaaattt tattttcttc taaaactttt
    21481 ttagcttcca aaaggctaga accagttgtt acaatatcat ctactaaaat tacaggttcg
    21541 tgaatggttt ttaagagttt gtaatttctt ttatgttttt gacgaaattc taaacttttt
    21601 ccagaatatt tcacagaatt ttgtgctttt aaaacattaa aaacaggttt tacaaatttt
    21661 gttttaagat atctagctaa aatagcagaa tgtgaataaa gcatatcttc aaccttatca
    21721 tctaaagcta taacattaat tgtcattcta ggatcaaaaa aatctttaaa ttttgcaaaa
    21781 cttaatttag caagcatttt ataaacaaaa taaccataaa aataatgttt agagtgaagc
    21841 aagtgttgta tttcatggta tttataaaaa gaatagactt tgaaattatt atcaagcttt
    21901 cttacattta aggaaaattc agaaagctct agctcgcata attcacaaaa gcagagcaga
    21961 gcaaaagctc cgcaatttat acacctcaaa gttcagagat taaactagct gctttatttg
    22021 ccatttgttt tattaacaaa tgagtataaa aagttgtttc ttttaaatca tcaaaacctt
    22081 gtacatcttg cttggtgcgg attgtaaatt tcttattttt atttatatca ctaacttgta
    22141 aaactcctac tagttttgaa tgtaatccta tagcatcttg agttgctcca taagatataa
    22201 attctaaatc aatcttactc acataaggtg aattttgatc gttattgtca agcacaacta
    22261 ttcctctagc ttcaagttct tgttttaaat aagtataaaa taccgcatta aaattcacat
    22321 cgacaaataa ctttttccct ttagcattta aaaccttttg cccttctttt aaatcataaa
    22381 atctatgtaa ataaaccttt ttcaaagcaa taccagtgtc taaagtgcgt ttattggcac
    22441 aacattgaat tccaacatcg ctaatgtata aaagcccttt aatctttgct tcaaaaccac
    22501 caggactttc acaagaactg cattgagaat ttttagaaat ttgattaact tgagcaaaag
    22561 tatcttgttt agttgcacaa gcactcaaaa ataaaatagg cactataaaa atcaaaaatt
    22621 ttttaaacat tttttctcct tagaaaatta ttttaaaatt gtattaaaaa tacaagcaaa
    22681 tttcaagcca agttttaaat ttatcatcaa tctatcttta aaacactcaa aaaagcctct
    22741 tgaggtaaat ttaccttacc tatagctttc attctttttt taccttcttt ttgcttttct
    22801 aaaagctttc tttttctagt aatatcccca ccataacatt ttgctgtcac atttttaccc
    22861 atggatttaa cagtttctct tgcgatgatt ttatttccaa tacttgcttg aatggccact
    22921 tcaaaaagct gtctaggaac tatttctttc atagcactaa caagttctct tcctttactt
    22981 tgcgcttttt cattaggcac gataatgctt aacgcatcaa cattttcacc cgctacctta
    23041 atatcaagtt ttaccaaatc ccctactcta aattctatag gctcataatc aaaactcgca
    23101 taaccttttg ttaaggactt taatttatca taaaaatcca tcacaatctc atttaaaggc
    23161 acatcatatt ctagcaaaac acgctcaggt gtgatatagt ccattttaac ctgcactcct
    23221 cttttgcgat ttaaaagagt gattaaattc cctaaaaatt cacttggagt aatgatagta
    23281 gctttaacat aaggctcttt tatatgatcg attttattaa caggaggaag ctcgctagga
    23341 ttttgaattt taataagctc tccatcggtt tgataaattt cgtaagtcac agttggagct
    23401 gtagcaatca aatcaagatt aaattctctc tcaagccttt ctttgataac ttccatatgt
    23461 aaaagcccta aaaatcctac cctaaaacca aagcctaagg ccaaagaagt ttcaggctca
    23521 taagtaatag aactatcatt aagctttaat ttatccaaag catctcttaa atcttcaaat
    23581 ttatccgttt ctataggata aagtcccgca aacacaaaag ctttagcctt ttcaaaacca
    23641 cctatggctt ctttagcttt gttttttacc aaagtgatgg tatcgcctac ttgtacatca
    23701 cctacggttt taagccctaa aaccaccaca cctacttcgc ctgattgtaa agattgagtt
    23761 ttaattggac ttaaagggtg gggataaaaa agatcttgaa ctatatgttt tttatccgta
    23821 ctcatgacta aaacttcatc gtttttagca atacttcctt cataaatcct aaccaaagcc
    23881 aaagcaccca aataattatc aaaccaagaa tcataaatta aagccttagt aggagcttca
    23941 tcatctgttt ttggtgcagg gattttagta ataattgttt ctataagctc ttttataccc
    24001 actcctgttt ttgcactcac gcaaattgca tctttgcaat ctatacctat aatatgctcg
    24061 atttcatgct ttactttctc aacatcagca ttaggtaaat cgattttatt aatcacagga
    24121 atgatttcaa gattattttc aagcgctata taaacattag ctatagtctg tgcttcaaca
    24181 ccttgagaag catctactac aagcaaagcc ccttcacaac ttgccaaaga acgactcact
    24241 tcataagaaa aatccacatg gccaggagta tcaataagat ttaaaacaaa attttcatta
    24301 ttaaatttat aatttaaacg cactgattgt gcttttatgg tgataccacg ctctttttct
    24361 atatccatag tatccataac ttgtgaactc atctgcctat cgctaatagc accacactcg
    24421 ctaataatcc tatctgcaag agtagatttt ccatgatcta tatgagctat aatagaaaaa
//
LOCUS       DAPIWJ010000017        23001 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.017, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000017 DAPIWJ010000000
VERSION     DAPIWJ010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 23001)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23001)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23001
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.017"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            8..3496
                     /locus_tag="RJ259_000505"
     CDS             8..3496
                     /locus_tag="RJ259_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HDV7366244.1"
                     /translation="MIQKALALAEELQGQIEANISNSEKEFHAKMQKLLNNPKNKVML
                     IELLDRSFRCKDKNASFELIEYTLSKYGIADFFSTFEKFLLFSFLNFGKFAPNLSVPF
                     FVKHLREDTKAMVLDANPSVLEPHIKKRKEQDKITLNVNLIGEEVLGEAESKYRMQKY
                     EEALKSSYITYISIKITTIFSQINIIDFNYSKEEVVKRLDYLYALALEEEKKQGVSKF
                     INLDMEEFRDLELTVAAFMESVAKFDIKAGIVLQAYIPDSYKYLKKLFAFSKERVLKG
                     MKPIKIRFVKGANMESEETIASQRGWELPTFYKKIDTDSNYNKMLDFILEGDNYKYIN
                     IGIASHNIFEIAYAYTRISEVGALDSFTFEMLEGMSLQCSYELSKMHDLILYAPVCDE
                     AHFNNAIAYLVRRLDENTSEDNFMRYFFNLKVGDKNWNIQKELFLKSLEGIKTLDNTT
                     HRKQDRNKESNIISSYEGKKFSNESDTDFILAQNRVWAKEIKTKYENLKDYDVYPVIG
                     ELDFKAENLNVLEVKDKIEDRVIGKAYLAGEKEIKQALEVAKNSKFTQKSHDEIYQIL
                     AKSAKLMRERRGDLIGLAALEVGKTFLEIDPEVSEAIDFIEFYPHSLEELKKQNPKVT
                     FTPKGIGVTIAPWNFPIGISVGTIAAPLAAGNVVIYKPSSLSTLTGYMLCKCFWDSGI
                     PKDALIFLPSKGSDISKYLLIDEAIKFSILTGGEDTAYAMLKANPTLLLSAETGGKNA
                     TIVSKFADRDNAIKNIIHSAFSNSGQKCSATSLLVLEEEVYHDEEFKKTLVDAASSMA
                     VGNPFEFKNKLGTLADKPSSKVQKALDELQPYEEWALKPKFLEDNPYLMTPGIKYGTK
                     KGDFTHMNELFVPILSVMKAKDLKEAIDIVNSTGYGLTAGFESLDEREWEYFHTHIEA
                     GNIYINKPTTGAIVLRQPFGGIKKSAIGLGRKVGIYNYITQFLEIKQEDFDDHLIEDK
                     FSKKLAQIDLKEAQDFINNLIKMSQSYAYHYKNEFSVSKDYVNIRGEDNLFSYTKIKN
                     MVLRLCGNESLKDVLGVVLGANIANIDLSISYDEQDVSMIERIVQSIGAKVLFLKENK
                     ENFIKSIKEYERVRYLAKPDVNDEIYKEAAKLAKIIIREKPLLNGRFELLNYFNEKAL
                     SISFHRYGNLGIRAIS"
     gene            3514..4983
                     /gene="putP"
                     /locus_tag="RJ259_000506"
     CDS             3514..4983
                     /gene="putP"
                     /locus_tag="RJ259_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HDV7366245.1"
                     /translation="MEVVQINTPIAVMFVVYALLMLYIGFYFYKQNKNSEDYFLGGRT
                     MGPVISALSAGASDMSGWLLMGLPGALYVSGFIDSYIAIGLTIGASLNWIFVAKRLRI
                     YTSVIANSLTIPDYFETRFDDDKHILRIVCAVVILIFFTFYVSSGLVSGAKLFESTFG
                     IRYDYALTTGTIIIVAYTFLGGYKAVCWTDMIQGLLMMMALIIVPLVMLYHLGGFGEA
                     MNIVREIKPQALSMGEGVGIVSIISALAWGLGYFGQPHILVRFMSIRSTKDIPMATFI
                     GIAWMAVCLLSACMIGILGIAYVHKFELSLQDPEKIFIVMSQLLFNPWIAGILLSAIL
                     AAIMSTASSQLLVSSSTIAEDFYKKIFREDAPSHIVLNLGKLGVLLVAVIAFLISTDK
                     NSSVLSIVSYAWAGFGASFGSVMLFSLFWSRMTRVGAILGMITGAATVVLWKNFANSG
                     LYEIVPGFLVASVVIIIASLFTNVRSGTKAAYEKMLKEL"
     gene            complement(4999..5226)
                     /gene="yedF"
                     /locus_tag="RJ259_000507"
     CDS             complement(4999..5226)
                     /gene="yedF"
                     /locus_tag="RJ259_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HDV7366246.1"
                     /translation="MKITYSLNLQGEACPYPAIATLDVLPKLKSGEILEVLCDCPQSI
                     NSIPQDAKNRGFKVLEIDQSGPTLRFLIQKP"
     gene            complement(5230..6438)
                     /gene="yedE"
                     /locus_tag="RJ259_000508"
     CDS             complement(5230..6438)
                     /gene="yedE"
                     /locus_tag="RJ259_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HDV7366247.1"
                     /translation="MNSFKQKYLINFWDNSRSMIALGILSAVYFGIFGGVWAVTGEMT
                     RWGGEFLELLGMNLDGYSYYQKQNLNGTPLTRTDGIMLIGMFIGCLVAALLANKVKFR
                     LPASNIRIFQAIVGGILSGYGARLAFGCNLANFFTGLPYFSLHTWLFTVFMVLGIYLG
                     VKICNTSFFKPKAKLERVNKENLPLNKQSLRTKLYFNLGILLFIAFLVWVFYLVFTNG
                     NISTQNKQSLLALALIFGFVFGFVISRGQICFTSCFRDLFLFGRDNAIKGALIGMIIA
                     SLIAFAFILQGHTSKLIELSPAVAVGAFLFGFGIVFAGGCECGWTYRAFEGQSHFIIV
                     GIANIIGTMILALSYNFLPKAFKEGIKINLLTEFGNLNGFFINLILFILMFVFVVFYK
                     KHFFKNQLKG"
     gene            6578..6675
                     /locus_tag="RJ259_000509"
     tRNA            6578..6675
                     /locus_tag="RJ259_000509"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6612..6614,aa:Sec,seq:tca)
     gene            6703..7953
                     /locus_tag="RJ259_000510"
     CDS             6703..7953
                     /locus_tag="RJ259_000510"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HDV7366248.1"
                     /translation="MSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTI
                     WVNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEVLIAEMAQFENLKGRLYISDRAHL
                     NLKHHSLIDIAKEKLKGKNAIGTTGKGIGPSYADKINRTGHRVGELLEPQRLCEALIK
                     DFEANKTFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEG
                     AQGSMLDIDHGTYPYVTSSSTISAGTLTGLGLNPKEAGNIIGIVKAYATRVGNGAFPT
                     EDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGF
                     EKIKICRAYEYKGMEIDYIPSDLENVQPIYEEMDGWDKVFGIKDYDLLPENAKKYIAR
                     LEELAGVKVKYISTSPERDDTIIL"
     gene            7950..8378
                     /locus_tag="RJ259_000511"
     CDS             7950..8378
                     /locus_tag="RJ259_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar FliJ family protein"
                     /protein_id="HDV7366249.1"
                     /translation="MKSKYNSVVKVRKQQLDKAESNLNQAKQRQLEHEKAYELSRQEC
                     ESLGVLPKSGSIVELRSNLSMAQVGREALARAKEKVELSKKEMNHYQFLYQKAHLDYE
                     KMKVLEAEEIKQKQKELAKAEEKFLDEIAISRFFKGEKDD"
     gene            8371..8889
                     /locus_tag="RJ259_000512"
     CDS             8371..8889
                     /locus_tag="RJ259_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotE family protein"
                     /protein_id="HDV7366250.1"
                     /translation="MIKKFILLVFISSVVFGAEQDCEQYFEARKAQIELQTREFDEAR
                     QSLEAYKASFEALQKERLENLEKKEAEVNATLAKIEELKLENARLVEEQQKILNSIND
                     KTQGRVKEIYSQMKDAAIADVLSQMDAEDASKIMLSLESRKISGVLSKMDPKKASELT
                     LLLKNLDNNASN"
     gene            8982..9533
                     /locus_tag="RJ259_000513"
     CDS             8982..9533
                     /locus_tag="RJ259_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HDV7366251.1"
                     /translation="MRIKLPHIPYIANKMMLDIANSSFVEIKDQLEKLKVCIIEVLEK
                     DILNERKLDERVKELLEQQEDEMELMQVDRKNMFWLVKKKLAPEFNVILDSEDRHNHL
                     AHQILEELVENDYINFIVSENRVKNLIFSSIESYLKIYEKLEDEVYEKISNYKTKPIP
                     GSEEYDLIFEKLYQEELRKKGMF"
     gene            9533..10651
                     /gene="carA"
                     /locus_tag="RJ259_000514"
     CDS             9533..10651
                     /gene="carA"
                     /locus_tag="RJ259_000514"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HDV7366252.1"
                     /translation="MKAYIYLENDIFLSAKAFGKSGTFFGELVFNTSLTGYQEIISDP
                     SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEK
                     HGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVS
                     TKKNYSHKQGVWNASFQKFNDAKRSEKKVAVIDYGVKTNILNELVEVGFEVEVYPYNV
                     KADELITLYKKGEIQGVFLSNGPGEPRILKQEIAEIKKLAEAKIPMLGICLGHQLLSN
                     AFGYETYKMKFGQHGANHPVINLDTKTVEITAQNHNYNVPEELAQVAHITHRNLFGDN
                     VEGVRYKDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
     gene            10648..11307
                     /locus_tag="RJ259_000515"
     CDS             10648..11307
                     /locus_tag="RJ259_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDV7366253.1"
                     /translation="MSIDFLAIISVAFLSSFGHCYSMCGGFNLLFINLNSKSNNLFLL
                     TFIYNLFRIFAYIVLGIIFGTFGNILAINAKVQSLSFFILGIFMMILGFALIFRGNML
                     SFIENNVFFDSFVKKIIKKSKNFKGLKSAIFLGFSNGFVPCGLVYFFIANAMSKQNIF
                     EGILVMMIFGISTLPAMLFFSKISQFFSDFLKNLFNYLSYGVIVCYGINLAYIGFKAF
                     Q"
     gene            11304..12515
                     /locus_tag="RJ259_000516"
     CDS             11304..12515
                     /locus_tag="RJ259_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
                     /protein_id="HDV7366254.1"
                     /translation="MKDFFKDQFFKALEKNTIFSRADVQGNLIFVSDKLCQISGYSKK
                     ELIGKKHSIFKHPDVEECYIEELLKKLSYKKPYQVIFKNIDKLGKTFYLETLLIPILD
                     KNNELIEIVAFSHDVSNSFKLNEELALNHAKLRELSINLENTVKNHQQEFIQLGKKFE
                     KKMQIALEKNEKDIKIAYEEILKSSLEQMISDIAHQWRQPLNELGIAMFQMKQNLKDE
                     KGFAEIYSQSKDMIKNMSETIDVFRTLFNKGVEQCVFIKETLNKALEIAFETIEKNHV
                     NINIVSKSDYEVLAYENGLIRVFLNLILNSIEAFKNKKRKIITINFSKFGKNYLKITI
                     KDNAGGIDKENLDKIFQPYFTTKHPSQGIGVGLYISRQIIESFQGKIKVKNGKDGACF
                     EIFLKLKERVE"
     gene            12518..13198
                     /locus_tag="RJ259_000517"
     CDS             12518..13198
                     /locus_tag="RJ259_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDV7366255.1"
                     /translation="MSQECKELIILVVEDEVKARESMINILSERFSKVIGAQNGDEGL
                     KKFKKFKPDLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGI
                     DKYLIKPVDIEELFKVLDYLIGEKIEANMLVKISEEYQFNKTKRTLIYSGGEIVLTKK
                     ELAFISLLLKQPGALVLHEDIKKNVWIGEHVSDTAVRTFIKRVRDKVGEDFIKNVPSL
                     GYKININK"
     gene            13324..14790
                     /gene="ccoN"
                     /locus_tag="RJ259_000518"
     CDS             13324..14790
                     /gene="ccoN"
                     /locus_tag="RJ259_000518"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HDV7366256.1"
                     /translation="MHPGNVLNYDYTVARYFMFATILFGIVGMAIGTLIAFQMAYPNL
                     NYLAGEYATFSRLRPLHTSGVIFGFMLSGIWATWYYIGQRVLKVSMAESRFLMAVGKL
                     HFWLYMLTMVLAVISLFMGVTTSKEYAELEWPLDILVVLVWVLWGVSIFGLIGIRREK
                     TLYISLWYYIATFLGIAMLYLFNNMEVPTYFVTGMGKWWHSVSMYAGTNDALVQWWYG
                     HNAVAFVFTVGIIAQIYYFLPKESGQPIFSYKLSLFAFWGLMFVYLWAGGHHLIYSTV
                     PDWMQTMGSVFSVVLILPSWGSAINILLTMKGEWSQLRESPLIKFMILASTFYMFSTL
                     EGPILSIKSVNALAHFTDWIPGHVHDGTLGWVGFMTMAALYHMTPRVFKRELYSKSLM
                     EAQFWIQTTGIVLYFASMWIAGITQGMMWRATDEYGNLLYSFIDTVVAIVPYYWIRAI
                     GGLLYLIGFFMFTYNIYKTIACGRVLDKEPKSASPMAA"
     gene            14803..15468
                     /gene="ccoO"
                     /locus_tag="RJ259_000519"
     CDS             14803..15468
                     /gene="ccoO"
                     /locus_tag="RJ259_000519"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HDV7366257.1"
                     /translation="MFSWLEKNPFFFAVAVFVVIAYAGIVEVLPNFAENARPIEGKKP
                     YTVLQLAGRAVYIKDSCNACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTG
                     PDLARVGNYRTADWHENHMWDPTSVVPDSIMPSYKHMFKNNADIETAYAEALTVKKVF
                     NVPYDAENGTKLGSWEDAQAEVKAEAQAIVDQMKNQEVKDAFAKGEIKEIVALIAYLN
                     SLK"
     gene            15473..15736
                     /locus_tag="RJ259_000520"
     CDS             15473..15736
                     /locus_tag="RJ259_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase, cbb3-type, CcoQ subunit"
                     /protein_id="HDV7366258.1"
                     /translation="MEHLSIVFDVIKNLITFDLATVQKHEWEIFQGYGFFALVMFLSI
                     VLYAYWYHLYRTEKKGERNYENYANLALKDDIDDSVLESKRSA"
     gene            15736..16599
                     /locus_tag="RJ259_000521"
     CDS             15736..16599
                     /locus_tag="RJ259_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDV7366259.1"
                     /translation="MQWLNLEDNVNLLSLIGAILIILITLVIVGRMFKQMKEKKGESE
                     LSEHSWDGIGEYKNAVPTGWAVVFFLTIVWAIWYFLWGYPLNSFSSIGQYNEEVATHN
                     TKFEEKFKNLSPEDKIAMGQNIFLVQCSACHGITGDGINGKAQNLNIWGSEEGIINVI
                     KHGSKGMNFPGGEMLGAADLGVAEEDIPAIAAYVAKDLSAIKKTANENLVAKGKEAYA
                     TCAACHGEDGKGQDGMFPDLTKYGSAAFVVDVLHSGKAGFIGTMPSFPTLNDIQKEAV
                     GEYVISLSRGE"
     gene            16596..16817
                     /locus_tag="RJ259_000522"
     CDS             16596..16817
                     /locus_tag="RJ259_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4006 family protein"
                     /protein_id="HDV7366260.1"
                     /translation="MMENNNRCVFSLSGVTGMLIATVLLLVILAVLTIWGLKAQQEVM
                     QKPYSLKDVQSVKMFGSKEQDHRSIKEAQ"
     gene            16814..16915
                     /locus_tag="RJ259_000523"
     CDS             16814..16915
                     /locus_tag="RJ259_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366261.1"
                     /translation="MSKALEYLIVIGLVAAAAITAWSVLTVNHLHIG"
     gene            16912..17514
                     /locus_tag="RJ259_000524"
     CDS             16912..17514
                     /locus_tag="RJ259_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366262.1"
                     /translation="MKKILQDGFFLAIFFFVLLPSRVFALDAVLFNENILSQKVSNEI
                     NLIGKELYQKSNIFIGVMVGDKTEIETLLNKQKELPQSYILLLLSKNSHKVDIVGSKG
                     ALALIDKEAVLSPYPGTGSILPILATNKGDIYNAAILNGYADIVDRVAKSLGLQLEHS
                     IGNANRDTINILRILIYGFICFALLYYAQRRIKRKKNVRN"
     gene            17501..18022
                     /locus_tag="RJ259_000525"
     CDS             17501..18022
                     /locus_tag="RJ259_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7366263.1"
                     /translation="MLETKKSFWPYGILLSLLAIIIACIVTIFIASHHPVYEDDFYFD
                     SYQNVENNYNQIQKQQVNFDKFFKVNFQNDKITFIGKRKIPSYEVDQNSYVANFKISA
                     LQNINSNDLKVQVLLTRPFTKNFDQKLEGQVKNGILSIALPKLDKGRWELKLKFYANQ
                     ETVGFFSYELNAQ"
     gene            18019..20385
                     /locus_tag="RJ259_000526"
     CDS             18019..20385
                     /locus_tag="RJ259_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HDV7366264.1"
                     /translation="MKLRIFSSSRQIREYYNQKKQQNALLDSAIHIGEFLDKVCLSNF
                     HKASSYESLLLMQEACLKSKDLEKKLGISVEFFAFLKNNEYLFSFFKELSLEKKSIED
                     LKNNDYYATYNEHLEILDEVYKNYLTLLEKNSFYDDLSLPKNYTLNKDFLDEYEAIVY
                     DLQGFLSKFEENLLSEISQIKEVVLSFKTSKFNLEYLLKLDFLKIFDLKINTHYEINL
                     SKQEILKEEIFKTKNSKMKLKSFELRALQCAFVMDEISHFVRKGLKPENIAVITPDES
                     FCEFLRLFDKDNMLNFASGISIKESLFYQKFQALYESASSASFIYKNQEDYFEDTQMI
                     FDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFEKLLALFLENEKQELIYLIRKELYFIK
                     DLLKNQSLTLKELIHLFFMQISQLSLSDVGGGKVTVMGLLESRGLCFDGVILVDFNEE
                     FIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNALEVSICFVENEEKSK
                     SRFLDELDFDFFYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFPLSFSR
                     FNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHKMLEIYYKNYANNNFDIKV
                     FANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEHFSKGFYVAHTELELNNILKLGT
                     DSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSYQLAFYQALYDENASVGFYDLNSMQ
                     ILHQKAKSLDELRERLKDLVLMSKEEIEFENEQDEYCPYKLIYKKELK"
     gene            20382..>23001
                     /locus_tag="RJ259_000527"
     CDS             20382..>23001
                     /locus_tag="RJ259_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RecB-like helicase"
                     /protein_id="HDV7366265.1"
                     /translation="MSQFEPFLALEASAGSGKTFALSVRFVALILKGARINEILALTF
                     TKKAANEMQKRIIETFLNLEKENKTSECNELCKLLGKDKEELISLRDAKKEEFLRTEL
                     KISTFDAFFGKILRVFALNLGLSSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLV
                     DEKENFFNELEKFYENAYFQNRPKILNPTKAYINKAYSELRSYCLGLTHVKNYKNLCD
                     NFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAKRMELINALNTYAIELENY
                     KIANLMNLLNHYSEAKNIFHKDKNTLNFQDVSKKVYELITSEFKDMIYFRLDGFISHL
                     LIDEFQDTSVIQYQILRPLIAELVSGEGVKKNRTFFYVGDKKQSIYRFRKGKKELFDL
                     LKQEFSQIKSDNLNTNYRSKELLVDFVNETFKEKIKDYKEQFALESKKGGFVRIVESK
                     EQKVKNQAQEIKEKTLETLFEQINFLRSKNISYDDICILCWKNSDADMVLDFLREQNI
                     PAFTQSNVLLENKASVRLVLEYAKYCIFGDEFYLVFLKELLGFEPRKITLDFSKNAME
                     NVLFLIKELKLDLNDIALIQFIEYAKTKENFLKLLFEPCALKIVSEQNMGISIMSVHK
                     SKGLEFDHVILLDSLSKNNSNNEDIMLEYDINQGWQLHIKDKIRELTKEPIYTLFKEN
                     ITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQERGFLE
                     SKEQILSVKKESIQTLQKFEKITLQEIQSEERLDSKELYFGNAFHFFMQNLKLPKGEN
                     FQILTQRCKSKFRHFLDESDFEKLFKRIEILLKNIQFQNLIGDGKLLKEQALSFNGEI
                     KQLDLLALKDEEAFIID"
BASE COUNT         8284 a         2659 c         4196 g         7862 t
ORIGIN      
        1 atacgaaatg atacaaaaag ctttagcctt agctgaagaa ttacaaggac aaatagaagc
       61 caatatttca aattctgaaa aagaatttca tgctaaaatg caaaaacttc ttaataatcc
      121 caaaaataaa gttatgctta tagagctttt agatcgttct tttagatgta aagataaaaa
      181 tgcaagtttt gagcttatag aatatacttt gagtaaatat ggcatagcgg atttttttag
      241 cacttttgaa aaattcctac tttttagctt tttaaatttt ggcaaatttg ctcctaattt
      301 aagtgtacct ttttttgtca aacatttaag agaagatact aaagctatgg ttctagatgc
      361 aaatcctagt gttttagaac cacatattaa gaaaagaaaa gagcaagata aaattacctt
      421 aaatgtgaat ttaatcggcg aagaggtttt aggtgaagct gagagtaaat atcgtatgca
      481 aaaatacgaa gaagccttaa aatcaagcta tatcacttat atttccataa aaattactac
      541 tattttttca caaattaata ttatagattt taattattct aaagaagagg tcgtaaaaag
      601 actagattat ctttatgctt tagccttaga agaagagaaa aaacaaggtg tatctaaatt
      661 tatcaatctt gatatggaag aatttaggga tttagagctc accgttgcag cttttatgga
      721 aagtgtggct aaatttgata ttaaagcagg gattgttttg caagcttata ttcctgattc
      781 ttataagtat cttaaaaaac tttttgcttt ttcaaaagag agggttttaa aaggtatgaa
      841 gcctattaag atccgttttg ttaagggtgc taatatggaa agtgaagaaa ccattgcgtc
      901 tcaaaggggt tgggagcttc ctacttttta caaaaaaata gatactgata gtaattataa
      961 taaaatgctt gattttattc ttgaaggaga taattataaa tacatcaaca taggaattgc
     1021 aagtcataat atctttgaga ttgcttatgc ttatacacgc ataagtgaag tgggtgcttt
     1081 ggattctttt acttttgaaa tgcttgaagg tatgagtttg caatgttctt atgaattatc
     1141 taaaatgcat gatctaatcc tttatgcccc agtttgcgat gaagcacatt ttaacaatgc
     1201 cattgcttat cttgtaagac gccttgatga aaatacaagt gaagataatt ttatgcgtta
     1261 ttttttcaat cttaaagtag gagataagaa ctggaatatc caaaaagaac tttttttaaa
     1321 atctttagaa ggcataaaaa ctcttgataa tactacacat cgtaagcaag atagaaataa
     1381 agaatcaaat atcataagtt cttatgaagg taaaaaattt agcaatgaaa gcgatacgga
     1441 ttttatttta gcacaaaata gagtgtgggc taaagaaatt aaaactaaat atgaaaattt
     1501 aaaagattat gatgtttatc ctgttatagg cgaacttgat tttaaagcag aaaatttaaa
     1561 tgttttagaa gttaaagata agatcgaaga tagagttata ggaaaggctt atttagcagg
     1621 agaaaaagaa atcaaacaag ctttagaagt agctaaaaat tccaaattta cacaaaaaag
     1681 tcatgatgaa atttatcaaa ttttagccaa aagtgcaaaa ctgatgagag aaagaagagg
     1741 ggatttgata ggtttggcag ctttagaagt gggcaaaacc tttttagaga tcgatcctga
     1801 agtaagcgag gctattgatt ttatagagtt ttatccgcac tctttagaag agcttaaaaa
     1861 acaaaatcca aaagttacat tcacacctaa aggtataggg gttaccatag ctccttggaa
     1921 ttttcctata ggaatttcag taggtactat agctgcacca ctagccgcag gtaatgtggt
     1981 gatttacaaa ccttcttcac tttcaactct aacaggttat atgctttgta agtgtttttg
     2041 ggattcgggt attccaaaag atgctttgat tttcttacct tcaaaaggaa gtgatatttc
     2101 taaatattta cttattgatg aagcgattaa attttcaatt cttacaggag gagaggatac
     2161 tgcttatgcc atgttaaaag ctaatccaac cttgctttta agtgctgaaa ctggcggaaa
     2221 gaatgcgact atagtttcta aatttgctga tcgtgataat gcgattaaaa atatcattca
     2281 ttctgctttt agcaatagcg gtcaaaaatg ttcagctact tctttgctag tcttagaaga
     2341 agaggtttat catgatgaag aatttaaaaa gactttagtg gatgctgcga gttctatggc
     2401 agtgggcaat ccttttgaat ttaaaaataa attaggtact ttagctgata agccaagttc
     2461 taaagttcaa aaggccttag atgaattaca accttatgaa gaatgggcat taaaacctaa
     2521 gtttttagag gataatcctt atttgatgac tccaggcata aaatatggca ctaaaaaggg
     2581 tgattttact catatgaatg aactttttgt accgatttta agtgtgatga aggctaaaga
     2641 cttaaaagaa gctattgata tagtaaattc cacaggttat ggtttaactg caggttttga
     2701 aagcttagat gaaagagaat gggagtattt tcacactcac atagaagcag gaaatattta
     2761 tatcaataaa ccaaccacag gggctatagt gctgcgtcaa ccttttggtg ggattaaaaa
     2821 atcagctata ggtttgggta gaaaagtggg aatttataat tatatcactc aatttttaga
     2881 gattaagcaa gaagattttg atgatcattt aattgaagat aaattttcaa aaaaattagc
     2941 acaaatagat ttaaaagaag cacaagattt tataaacaat ttaattaaaa tgtctcaatc
     3001 ttatgcttat cattataaaa acgagtttag tgtttcaaaa gattatgtca atattcgtgg
     3061 agaagataat cttttttctt atactaaaat aaagaatatg gttttaagac tttgtggaaa
     3121 tgaaagctta aaagatgttt taggtgtggt tttaggtgca aatattgcaa atattgatct
     3181 aagtatcagt tatgatgaac aagatgttag tatgatagaa cgaattgttc aaagcatagg
     3241 agcaaaagta ttgtttttaa aagaaaataa agaaaatttt atcaagagta ttaaagaata
     3301 tgaaagagtg cgttatttag caaagccaga tgtaaatgat gagatttata aagaggctgc
     3361 aaagcttgct aaaatcatta taagagaaaa gccattatta aatggtcgtt ttgaactttt
     3421 aaattatttt aatgaaaaag ctttaagtat atcttttcat cgttatggaa atttaggcat
     3481 tagagcaata tcttaatgat caaggagaga ttgatggaag tggttcaaat taatacccca
     3541 atagcagtga tgtttgtagt gtatgcctta ttaatgcttt atataggttt ttatttttat
     3601 aagcaaaata aaaattcaga ggattatttt ctaggtgggc gtactatggg gcctgtgata
     3661 tctgcactta gcgcaggggc ttctgatatg agtggttggc ttttaatggg tttaccagga
     3721 gctttatatg taagtggttt tatagattct tatattgcaa ttgggcttac tataggagct
     3781 agtttaaatt ggatttttgt ggcaaaaaga cttagaattt ataccagtgt gattgcaaat
     3841 tctttgacta ttcctgatta ttttgaaact cgttttgatg atgataaaca tatactgcgc
     3901 attgtatgtg cggtggtaat tttgatattt tttacctttt atgtttcatc agggcttgta
     3961 agcggagcaa aactttttga aagtactttt ggtatcagat acgattatgc tttaactact
     4021 ggaacgatta ttattgttgc ttatactttt ttaggtggat ataaggcggt ttgttggacg
     4081 gatatgatac aagggctttt aatgatgatg gctttaatta ttgtaccttt ggttatgctt
     4141 tatcatttag gtggttttgg tgaagcgatg aatatagtaa gagaaataaa gccacaagct
     4201 ttatctatgg gcgaaggagt aggaattgta agcattatat ctgcacttgc ttggggtttg
     4261 ggttattttg gtcaaccaca tattttagtg cgttttatgt cgattcgttc tactaaagat
     4321 attcctatgg ccacttttat aggtattgct tggatggcgg tttgtctttt aagtgcttgt
     4381 atgataggta ttttaggtat agcttatgtg cataaatttg aattaagttt gcaagatcct
     4441 gaaaagattt tcatcgtgat gtcgcagctt ttatttaatc cttggatagc aggtatttta
     4501 ctcagtgcta ttttagcggc tattatgagt acggcaagtt cacaattgct ggtttcaagt
     4561 tctactatag cggaagattt ttataaaaag atttttagag aagatgcacc aagtcatatt
     4621 gtattaaatt taggtaaatt aggtgtttta ttggtagctg taatagcgtt tttgatttct
     4681 actgataaaa actcaagtgt tttgagtata gtttcttatg catgggctgg atttggagct
     4741 tcttttggtt ctgtaatgct tttttcttta ttttggagta ggatgacaag agtaggagcg
     4801 atcttaggta tgataacagg agctgctact gtggtgcttt ggaagaattt tgcaaattca
     4861 ggtctttatg aaatagttcc agggttttta gtagcttcgg tggtgattat tattgcaagt
     4921 ttgtttacaa atgtaagatc tggaactaag gcagcttatg aaaagatgtt aaaagagctt
     4981 tgagaataaa agcctttttt aaggcttttg gattaaaaat cttagtgtgg gtccactttg
     5041 atcgatttca agcactttaa aaccacggtt ttttgcatct tgaggtatgg aattgatact
     5101 ttgtggacaa tcacaaagta cttctaaaat ttctccactt ttaagcttag gtaagacatc
     5161 aagtgttgct atagcaggat aaggacaagc ttcaccttgt aaatttaaac tataagtaat
     5221 tttcactgtt tatcctttaa gttgattttt aaaaaagtgt tttttgtaaa atactacaaa
     5281 aacaaacatt aagatgaata aaataaggtt gataaaaaat ccatttaaat tgccaaattc
     5341 agttaaaaga ttgattttta taccttcttt aaaagctttt ggtaaaaagt tataacttaa
     5401 agctaaaatc atagttccta ttatatttgc aattcctact attataaaat gactttgtcc
     5461 ttcaaaggca cgataagtcc aaccacactc gcaacctccg gcaaaaacta taccaaaacc
     5521 aaacaaaaat gctcccacag ctacagcagg agaaagttct atgagtttgc tagtatgacc
     5581 ttgcaagata aaagcaaaag cgattaaaga ggcgataatc ataccgatta atgcgccttt
     5641 tatagcatta tctctaccaa ataaaaataa atctctaaag caagaagtaa aacaaatttg
     5701 ccctctagaa ataacaaagc caaaaacaaa accaaaaatc agtgctaaag ctagaagact
     5761 ttgtttgttt tgtgtgctga tattgccatt tgtaaaaaca agataaaaca cccaaactaa
     5821 aaaggctatg aaaagcaata tgcctaagtt aaaatataat tttgtacgca aactttgctt
     5881 gtttaacggc aagttttctt tatttacacg ttctaattta gctttaggtt taaaaaagga
     5941 agtgttgcaa attttcactc ctagataaat tcctaaaacc ataaaaacag taaaaagcca
     6001 agtgtgtaaa gaaaaataag gtaaacctgt aaaaaaatta gctaaattgc atccaaatgc
     6061 aagtcttgct ccatatcctg aaagaattcc acctactatt gcttgaaaaa ttcttatatt
     6121 gctagcaggt agacgaaatt tgactttgtt agctaaaagt gcggctacta aacaacctat
     6181 aaacatacct atgagcataa taccatcagt tcttgttaaa ggggttccat ttaaattttg
     6241 cttttggtaa taagaatatc catctaaatt catacctaaa agctctaaaa actcgccacc
     6301 ccaacgtgtc atttctccag taacagccca aacgccacca aaaatcccaa aatacactgc
     6361 acttaaaatt ccaagtgcaa tcatagaacg ggaattgtcc caaaaattga ttaaatattt
     6421 ttgtttaaaa gaattcaaag aaagatccta aaaatgtaat catcaaaact tgatgctaaa
     6481 aaagagtgag attatagctt aaatttaata tgaagtcaaa aagaatattg ataaatttat
     6541 tttgtttttc attaaaaatc gctataatta tcactttgga agattagcgt atctggtgat
     6601 cgccactgac ttcaaatcag atgaaaggat agttgactat tctttgggga gttcgattct
     6661 ctcatcttct cgccaatatt aagtaaaatc aaggaaattt ttatgagcaa agcagatatt
     6721 attgtcggca ttcaatgggg cgatgaagga aaaggtaagg tagttgataa attatgtgaa
     6781 aattatgatt ttgtttgcag aagtgcaggt ggacacaatg caggacatac gatttgggta
     6841 aatggtgtaa gatatgcgct tcatcttatg ccaagtggag ttttgcatcc aagatgtatt
     6901 aatattatcg gaaatggagt tgtggtttct cctgaagtat tgattgctga aatggctcaa
     6961 tttgaaaatt taaaaggtag attatatatc agcgatagag ctcatttaaa tttaaaacat
     7021 cattctttaa tagacattgc aaaagaaaag ctcaaaggca aaaatgccat aggaacaaca
     7081 ggtaagggta taggaccttc ttatgcagat aagattaatc gtacaggaca tagagttgga
     7141 gagcttttag aaccacaaag actttgcgag gctttgataa aagattttga agctaataaa
     7201 actttttttg aaatgcttga aattgaaatt ccaagtgctg aagaattgct tgctgattta
     7261 aaacgtttta atgaaatttt aactccttat attacagata ctacaagaat gctttggaag
     7321 gctttagatg aagataaaag agtactttta gaaggagctc agggttctat gcttgatatt
     7381 gatcatggaa cttatcctta tgttacaagt tcaagtacta tttcagcagg cactttaaca
     7441 ggacttgggt taaatcctaa agaagcggga aatattatag gtattgtaaa agcttatgca
     7501 acgcgtgtgg gaaatggagc ttttcctact gaggataagg gcgaagatgg agaaaaaatt
     7561 gcgcaaattg gaaaagagat tggcgtaagc acgggacgca aaagacgctg tggatggttt
     7621 gatgcggttg ctgtaagata tacagcaagg cttaatggtc ttgatgcttt atctttgatg
     7681 aagcttgatg ttttagatgg ttttgaaaag ataaaaattt gtcgtgctta tgaatataag
     7741 ggtatggaaa tcgactatat accaagtgat ttagaaaatg ttcaacctat ttatgaagaa
     7801 atggatggtt gggataaagt ttttggtata aaagattatg atttattgcc agaaaatgct
     7861 aaaaaatata tagcaagact tgaagagctt gcaggggtta aggtaaagta tatttctact
     7921 agccctgaaa gagatgatac tatcatctta tgaaaagtaa atataattct gttgtaaagg
     7981 taagaaaaca acaacttgat aaagcagaat caaatcttaa tcaagccaaa caaagacagc
     8041 ttgaacatga aaaagcttat gaactttcac gccaagagtg tgaaagttta ggcgtattgc
     8101 caaaatcagg atctatagta gagttaagat cgaatttaag tatggcacaa gtaggacgcg
     8161 aggctttggc aagagctaag gagaaagtag aactttctaa aaaagaaatg aatcattatc
     8221 agtttttata tcaaaaagca catttagatt atgaaaaaat gaaggtttta gaagccgagg
     8281 aaattaaaca aaagcaaaaa gaacttgcca aggctgaaga aaaattttta gatgaaattg
     8341 caatcagtcg ttttttcaaa ggagaaaaag atgattaaaa aatttatatt gttagttttt
     8401 atttcaagtg tagtttttgg agctgaacaa gattgtgagc agtattttga agctagaaaa
     8461 gctcaaattg aattgcaaac tagagaattt gatgaagcaa gacaatcttt agaagcttat
     8521 aaagcctctt ttgaagcttt gcaaaaagaa aggcttgaaa atttagaaaa aaaagaggct
     8581 gaggttaatg caactttggc aaaaattgaa gaattaaagc ttgaaaacgc aaggcttgta
     8641 gaagaacaac aaaagatttt aaattcaatc aatgataaaa cacaaggtag ggttaaagaa
     8701 atttattccc aaatgaaaga tgcagccatt gcagatgttt taagtcaaat ggatgcagag
     8761 gatgcaagca aaataatgct ttctttggaa tcgcgtaaaa tttcaggtgt tttatctaaa
     8821 atggatccaa aaaaagctag cgagcttact ttgcttttga aaaatttaga taataatgct
     8881 agtaattagg tgattaaaat aatgaaaatt tttcattttt aacattcttt taccaaaaat
     8941 aagctattat ttcaaacatt atcaaataaa aggtttttaa gatgcgtata aaattaccac
     9001 atattcctta tatcgcaaat aaaatgatgt tagatatagc taattcttct tttgtagaaa
     9061 ttaaagatca attagaaaag cttaaggtat gtataataga agttttagag aaagatattc
     9121 taaatgaaag aaaattagat gaaagagtaa aagagctttt agagcaacaa gaagatgaaa
     9181 tggagcttat gcaagtagat cgtaaaaata tgttttggct tgtgaagaaa aagttagctc
     9241 ctgaatttaa tgtgatttta gattctgaag atagacataa tcatctagcg catcaaattt
     9301 tagaagaact tgtagagaat gattatatta attttatagt gagtgaaaat agagttaaaa
     9361 atttaatctt ttcaagcata gagtcttatc ttaaaattta tgaaaaactt gaagatgagg
     9421 tttatgagaa aattagcaat tataaaacaa aacctattcc aggtagcgaa gaatacgatc
     9481 ttatctttga aaaactctat caagaagagc ttagaaaaaa aggtatgttt taatgaaggc
     9541 ttatatttat ttagaaaatg atattttttt aagtgctaag gcttttggaa agagcggtac
     9601 tttttttgga gagcttgtat ttaacacttc tttaacaggg tatcaagaaa ttatttcaga
     9661 tccttcttat gcagggcaat ttatcgtatt ttccatgcca gaaattggta tagtgggaac
     9721 caatgaaaat gataatgaaa gcaaggaaat ttttgcaagt ggtgttttaa tgcgtgaatt
     9781 aagttccagt ttttcaaatt ttcgcgctaa agaaagtctg caagattatc ttgaaaaaca
     9841 tggaaaaata ggaatttatg aacttgatac gagatatcta gtaaaaatga taagaaataa
     9901 tggcaattta agagctgtaa tttcaactga aatttcaaat aaagaagatt taaaaatcgc
     9961 cttagaaaaa tcagcaaaaa ttgatgaagt aaattttgta aaagaagtta gcactaagaa
    10021 aaattattct cataaacaag gcgtttggaa cgctagtttt caaaaattta atgatgctaa
    10081 aagaagtgag aaaaaagttg ctgttataga ttatggtgtt aaaacaaata tcttaaatga
    10141 acttgtagaa gtaggttttg aagtagaagt ttatccatat aatgttaaag cagatgagtt
    10201 gattactctg tataaaaaag gtgaaattca aggcgtgttt ctttctaatg gtccaggtga
    10261 gccaaggatt ttaaaacaag agattgcaga gattaaaaaa cttgcagaag ctaaaattcc
    10321 tatgcttgga atttgcttag gtcaccagct tttaagtaat gcttttggat atgaaactta
    10381 taaaatgaaa tttggacaac atggagcaaa tcatcctgtg atcaatcttg atacaaaaac
    10441 ggtagaaatt accgcacaaa atcataatta taatgttcca gaagaattag ctcaagtggc
    10501 tcatatcact catagaaatt tatttggcga taatgttgaa ggagtaagat ataaagacta
    10561 tcctattatt tcagtgcaac atcatccaga aagttcttca ggtcctcatg aaagtaagta
    10621 tatttttaaa gaatttatga atttgatgtg agtatagatt ttttagctat tatcagcgtt
    10681 gcttttttat ctagttttgg acactgctat tctatgtgtg gtggttttaa tttacttttt
    10741 ataaatttga attcaaaaag caataattta tttttattaa cttttattta taatttgttt
    10801 agaatttttg cttatattgt tttagggata atttttggga cttttgggaa tatcttggca
    10861 atcaatgcca aggttcaaag tttgtcattt tttattcttg gtatatttat gatgattttg
    10921 ggttttgctc ttatttttag aggtaatatg ttatctttta ttgaaaataa tgtttttttt
    10981 gatagttttg taaagaaaat tattaaaaaa tctaaaaatt ttaaaggatt aaaatcagcc
    11041 atatttttag gattttcaaa tggttttgtt ccttgtggat tggtgtattt ttttatagcc
    11101 aatgcaatga gtaagcaaaa tatttttgaa ggtattttgg taatgatgat ttttggaata
    11161 tcaactttac ctgcgatgtt atttttttct aaaatttcac agttttttag tgattttttg
    11221 aaaaatttat ttaattattt atcgtatggc gttattgttt gttacggtat aaatcttgcc
    11281 tatataggtt ttaaggcttt tcaatgaaag atttttttaa agatcagttt tttaaagctc
    11341 ttgaaaaaaa tacaattttt tcaagagctg atgttcaagg aaatttaatt tttgtcagtg
    11401 ataagctttg tcaaataagt ggatatagta aaaaagagct tataggaaaa aaacattcaa
    11461 tatttaaaca tccagatgtt gaggaatgtt atattgaaga acttttaaaa aaactttcat
    11521 ataaaaaacc ttatcaagtt atttttaaaa atattgataa attaggcaaa actttctatc
    11581 ttgaaacttt attaatcccc atattggata aaaataatga attaatagaa atagtagcat
    11641 tctctcatga tgttagtaat tcttttaagc ttaatgaaga gcttgctcta aatcacgcta
    11701 aattaagaga attaagtatt aatcttgaaa atacagttaa aaatcaccaa caagaattta
    11761 tacagttagg taaaaaattt gagaaaaaaa tgcaaattgc cttggaaaaa aatgaaaaag
    11821 atattaaaat agcatatgaa gagattttga aatcttcatt agaacaaatg attagcgata
    11881 tagcacatca atggagacaa ccgttaaatg agctcggtat tgccatgttt caaatgaagc
    11941 aaaatcttaa agatgaaaaa ggatttgctg aaatttactc acaatcaaaa gatatgatta
    12001 aaaatatgtc agaaacaatt gatgtgttta gaactttgtt taacaaagga gtagagcagt
    12061 gtgtatttat aaaagagact ttaaataaag ccttggaaat tgcttttgaa actatagaaa
    12121 aaaatcatgt aaatattaat attgtttcga aaagtgatta tgaagttttg gcatatgaga
    12181 atggtttaat aagagttttt cttaatttga ttttaaattc aatagaagca tttaaaaaca
    12241 aaaaaaggaa aatcataaca ataaattttt caaaatttgg aaaaaattat ctgaaaatta
    12301 caataaaaga taatgctggt gggattgata aagaaaattt agataaaatt tttcaacctt
    12361 attttacaac aaaacatcct agtcaaggta taggagtagg actttatata agtagacaaa
    12421 ttatcgaaag tttccaagga aaaataaaag ttaaaaatgg aaaagacggg gcttgttttg
    12481 agatattttt aaaactaaaa gagagggtag agtagaaatg tcacaagaat gtaaagaatt
    12541 gataatatta gtagttgaag atgaggttaa ggctagagaa tcaatgatta atatattaag
    12601 cgaacgcttt agtaaagtaa tcggagctca aaatggagat gaggggctta aaaaatttaa
    12661 aaaatttaag ccagatttag ttatcacaga tattgctatg cctattatgg atggactgga
    12721 tatggcaaga gagattaaag aaatttcaga tgatgtccca attgttgttc ttagtgcgta
    12781 ttcagagaaa gagagacttt tgcgttctat tgatattggt atagataaat atttgattaa
    12841 acctgttgat atagaagagt tgtttaaagt tttagattat ctgataggtg aaaaaattga
    12901 agcaaatatg cttgtaaaaa tttctgaaga atatcaattt aacaaaacta aacgaacttt
    12961 aatttacagt ggtggagaaa ttgttttaac taaaaaagaa ttggctttta tttctttgct
    13021 tttaaagcaa cctggagctt tggttttgca tgaagatatt aagaaaaatg tttggatagg
    13081 tgaacatgtg agcgatactg ctgttagaac ttttataaaa agagtaagag ataaagtggg
    13141 tgaagatttt ataaaaaatg tgccaagttt aggttataag ataaatatca ataaataaga
    13201 ctgatttagc cttaaaatat aaaacataac aaatgattaa caaaattatc atttttaaga
    13261 aaaaatgtat aattaatatt ctataatatt ctcttgttat caaaaatttt aaggagaaag
    13321 tcgatgcatc caggtaatgt attaaattac gactatacgg ttgcaagata ttttatgttt
    13381 gcgaccatat tgtttggcat tgttggtatg gctataggaa ctcttatagc ttttcaaatg
    13441 gcatatccta atttaaatta tttagcagga gaatatgcca ctttttcaag acttagacca
    13501 cttcatactt caggtgtgat ttttggtttt atgctttcag ggatttgggc aacttggtat
    13561 tatataggtc agcgtgttct taaagtgagt atggctgagt caagattttt aatggctgtt
    13621 ggtaagcttc atttttggct ttatatgctt actatggttt tagctgttat atctttgttt
    13681 atgggtgtga ctacatctaa agaatatgca gagcttgagt ggcctttaga tattcttgtt
    13741 gttcttgttt gggttttatg gggtgtaagt atttttggac ttattggaat tcgccgtgaa
    13801 aaaacccttt atatttctct atggtattat atagctacat ttttaggtat agctatgctt
    13861 tatcttttta acaacatgga agtaccaact tattttgtta ctggaatggg taaatggtgg
    13921 catagtgtat caatgtatgc aggaacaaat gatgctttag tacaatggtg gtatggacat
    13981 aatgctgtgg catttgtatt tactgtgggt attattgctc aaatttatta cttcttgcca
    14041 aaagaaagtg gtcagccgat tttctcttat aaactctctt tatttgcatt ttggggctta
    14101 atgtttgttt atctttgggc aggtggtcac catttgattt attcaactgt acctgattgg
    14161 atgcaaacta tgggttcggt tttctctgta gtattgattt taccttcttg gggttcagcg
    14221 attaatatct tgcttactat gaaaggtgag tggagtcagc ttcgcgagag tccgttgatt
    14281 aaatttatga ttttggcatc aactttctat atgttctcaa cacttgaagg gccaattctt
    14341 tcaattaaat ctgttaatgc tttagcacac tttacagatt ggattccagg acatgttcat
    14401 gatggaacat taggttgggt aggatttatg actatggctg cgctttatca tatgactcct
    14461 agagttttca aaagagagct ttatagcaaa tctttaatgg aagctcaatt ttggatccaa
    14521 accacaggta tagttcttta ttttgcttca atgtggattg cgggtattac tcaaggtatg
    14581 atgtggagag cgacagatga gtatggtaac ttgctttata gctttattga tactgttgtg
    14641 gctattgttc cttattattg gattagagcg attggtggat tgttgtatct tatcggtttc
    14701 tttatgttta cttataatat ttacaaaaca attgcttgtg gaagagtgct tgataaagaa
    14761 ccaaaaagcg cttcgcctat ggcagcataa aaaggagaaa atatgtttag ttggttagaa
    14821 aaaaatccat tcttttttgc tgtagctgtt tttgtagtga ttgcttatgc aggcatagtt
    14881 gaagttttac caaattttgc agaaaatgca agaccaattg aaggtaaaaa accttatacg
    14941 gttttacaac ttgcagggcg tgcagtatat attaaagata gttgtaatgc ttgtcattca
    15001 cagcttattc gtccatttaa atcagaaaca gatcgttatg gtatgtattc tgtaagtggt
    15061 gaatttgctt atgatagacc ttttctttgg ggctcaaaaa gaacaggacc tgatcttgct
    15121 cgtgtaggaa attatagaac ggctgattgg catgaaaatc atatgtggga tcctacttct
    15181 gttgttccag attctattat gccttcatat aagcatatgt ttaaaaataa tgcagatatt
    15241 gaaactgctt atgctgaggc tttaactgtg aaaaaagttt tcaatgttcc ttatgatgca
    15301 gaaaatggaa caaaacttgg ttcttgggag gatgcacaag ctgaagtaaa agctgaagct
    15361 caggctatag ttgatcaaat gaaaaatcaa gaagtaaaag atgcttttgc taaaggtgaa
    15421 atcaaagaaa tagttgcttt gatcgcttat ttaaatagct taaagtaaga tgatggaaca
    15481 tttatcaata gtttttgatg tgattaaaaa tttaatcaca tttgatttag caacagttca
    15541 aaaacatgag tgggagattt tccaaggtta tggttttttt gcactcgtga tgtttttgtc
    15601 aatagtatta tatgcgtatt ggtatcattt atatagaaca gaaaaaaaag gcgagagaaa
    15661 ttatgaaaat tatgcaaacc ttgccttaaa agatgatatt gatgatagtg tattagaaag
    15721 taaaaggagt gcttaatgca atggttaaat ttagaagata atgttaatct cttatcttta
    15781 attggagcta ttcttatcat tttaatcaca ctagttattg tgggtagaat gtttaagcaa
    15841 atgaaagaaa aaaaaggcga gtcagagctt agtgaacata gttgggatgg aataggagag
    15901 tataaaaatg ctgttcctac tggttgggct gtggtatttt tcctgactat tgtttgggct
    15961 atttggtatt ttctatgggg atatccttta aattcttttt caagtatagg tcaatataat
    16021 gaagaagtag caactcataa tacaaaattt gaagaaaaat ttaaaaattt atctcctgaa
    16081 gataaaatag caatgggtca aaatatcttt ttagttcagt gttcggcttg tcatggaatt
    16141 acaggagatg gtatcaatgg taaagctcaa aatttaaata tttggggtag tgaagaaggt
    16201 ataatcaatg taattaaaca tggttcaaaa ggtatgaatt ttccaggtgg agaaatgctt
    16261 ggtgctgctg atttaggtgt agcagaagaa gatatccctg ctattgctgc ttatgtagca
    16321 aaagatcttt cagctattaa gaaaactgca aatgaaaatt tagtagcaaa aggtaaagaa
    16381 gcttatgcaa cttgtgcagc atgccatgga gaagatggaa aaggtcaaga tggaatgttc
    16441 ccagatctta caaaatacgg ttctgcagct tttgtagtag atgttttaca tagtggtaag
    16501 gctggtttta taggaacaat gccgagtttt ccaacactta atgatattca aaaagaagct
    16561 gttggcgagt atgtaatttc tctttcaagg ggtgaatgat ggaaaataat aatagatgcg
    16621 tgttttctct ttcaggtgtt acaggtatgt taattgctac ggttttgttg cttgttatct
    16681 tagcagtttt aactatttgg ggtcttaaag ctcagcaaga agtgatgcaa aagccatata
    16741 gtcttaaaga tgtacaaagt gtaaagatgt ttggttcaaa agaacaagat catagaagta
    16801 taaaggaagc acaatgagta aggctttgga atatttaatt gttattggtt tagttgctgc
    16861 tgctgcaatc accgcttggt cggttttgac cgtaaatcat cttcatatag gatgaaaaaa
    16921 atattacaag atggcttttt tttagctatc ttcttctttg ttttattgcc ttctagggtt
    16981 tttgctcttg atgctgtact ttttaatgaa aatattttaa gtcaaaaagt aagtaacgag
    17041 attaatctta taggaaaaga gctttaccaa aaaagtaata tttttatcgg cgttatggtt
    17101 ggtgataaaa ctgaaattga aactttatta aataaacaaa aagaacttcc tcaatcttat
    17161 atattgcttc ttttgtcaaa aaattctcac aaagttgata tagtgggctc aaaaggtgct
    17221 ttagctttga ttgataaaga agctgtgctt agtccttatc ctggaacagg atctattttg
    17281 ccgatattag ctacaaataa aggtgatatt tataatgctg ctatacttaa tggttatgca
    17341 gatattgtag atcgtgtggc aaaatccttg ggattacaat tagaacattc tataggtaat
    17401 gcaaatcgtg atactatcaa tattttaaga atacttatct atggatttat ttgctttgca
    17461 ttgttatact atgcacaaag aagaataaag aggaaaaaaa atgttagaaa ctaaaaaaag
    17521 tttttggcct tatggtattt tgctttcact tttggctata attattgctt gtattgtaac
    17581 gatttttata gcaagtcacc atcctgtgta tgaggatgat ttttattttg actcttatca
    17641 aaatgttgaa aataattaca atcaaataca aaaacaacaa gtaaattttg ataaattttt
    17701 taaagtaaat tttcaaaatg ataaaatcac ttttataggt aaaagaaaaa ttcctagtta
    17761 tgaagtggat caaaattcct atgttgcaaa ttttaaaatt tctgcattac aaaatataaa
    17821 ttctaatgat ttaaaagttc aagttcttct tacaagacca ttcactaaaa attttgatca
    17881 aaagttagaa ggacaagtta aaaatggaat tttaagtatc gctttaccta aattagataa
    17941 aggtagatgg gagcttaagc taaagtttta tgcaaatcaa gaaacagtgg gtttttttag
    18001 ctacgaatta aatgctcaat gaaattaaga atttttagct cttcaaggca aattagagaa
    18061 tattataatc aaaaaaaaca gcaaaatgct ttattagata gtgctattca tataggtgaa
    18121 tttttagata aagtttgttt gagcaatttt cataaggcaa gttcttatga aagcttactt
    18181 ttaatgcaag aagcttgtct aaaaagtaag gatttagaaa aaaaactagg aatttcggta
    18241 gaattttttg cttttttgaa aaataacgaa tatctttttt cttttttcaa agaacttagt
    18301 ttagaaaaaa aaagtataga agatcttaaa aataatgatt attatgctac ctataatgaa
    18361 catttggaaa ttttagatga ggtatataag aattatctta ctttgcttga aaagaattct
    18421 ttttatgatg atctttcttt gcctaaaaat tacactctta ataaagattt tttagatgag
    18481 tatgaagcta tagtttatga tttgcaaggt tttttgagta aatttgaaga aaatttatta
    18541 agtgaaattt ctcagattaa agaagtggtt ttaagtttta aaacaagtaa atttaatctt
    18601 gaatatcttt taaaacttga ttttttaaaa atatttgatt taaaaataaa cactcattat
    18661 gaaatcaatc tttcaaaaca agagatctta aaagaagaaa tttttaaaac aaaaaattca
    18721 aaaatgaaac tcaaatcttt tgaattaagg gctttgcaat gtgcttttgt tatggatgaa
    18781 atttcacatt ttgtacgcaa aggtttaaag cctgaaaata ttgcagttat aactccagat
    18841 gaaagttttt gtgagttttt aagacttttt gataaagaca atatgcttaa ctttgcaagt
    18901 ggaattagta ttaaagagag tttgttttat caaaaatttc aagcacttta tgaaagtgct
    18961 agtagtgctt cttttattta taaaaatcaa gaggattatt ttgaagacac gcagatgatt
    19021 tttgattatc acaatacgct tttacattct ttaaaacttg attttataga gtttaaaaag
    19081 tattttgatg agaaatgtga ttttgaatat tttgaaaaat tacttgcttt gtttttagaa
    19141 aatgaaaagc aagagcttat ttatttgata cgaaaagaac tttattttat taaagattta
    19201 ttgaaaaatc agtctttaac tcttaaagag ttgatccatc tttttttcat gcaaatttca
    19261 caactttccc ttagtgatgt aggtggaggt aaggttacgg taatgggact tttagaaagt
    19321 cgtgggcttt gttttgatgg agtgattttg gttgatttta atgaagaatt tattcctaaa
    19381 agaagtgtta atgagctttt tttaaacaat gaagtgcgta aaaaagcagg attgattagc
    19441 tatgatagaa gagaaaattt acaaagattt tattatgaaa gcttgatgaa gaatgcttta
    19501 gaagtaagta tttgctttgt ggaaaatgaa gaaaaaagca aatcacgttt tttagatgaa
    19561 cttgattttg acttttttta tgaaactcat atccaccaaa aagcttatct taatgcttta
    19621 aaattagact atgaaggcat aaaacctaat ctaactccta taaaagctcc tattttaaag
    19681 cataatcctt tcgagtttcc gctttctttt agtcgtttta atttattgga aaatcaaaaa
    19741 agaacttatt attatcgtta tattttaaat ttagcagaac ctagggtttt aagcgaggaa
    19801 agcaaagcga aaaatcaagg aaattttatc cataaaatgc ttgaaattta ttataaaaat
    19861 tatgcaaata ataattttga tataaaagtt tttgcaaatt tattggataa agaatatcaa
    19921 aaatacaata tcagcgaact tgatcttgaa gtatttaaat taaaatttat acaatttgct
    19981 aaaaatgaaa aagagcattt ttcaaaaggc ttttatgtcg cacatacaga gcttgagtta
    20041 aacaatattt taaagctcgg aacagatagt ataaaactta agggtactat agatcgtatc
    20101 gatagttcaa aagaaggtaa tttgattatt gattataaaa gtggaaaagt gccaagtaat
    20161 tcttatcaac ttgcttttta ccaagcttta tatgatgaaa atgcaagcgt gggtttttat
    20221 gatttaaata gtatgcaaat attgcatcaa aaagccaaaa gtttagatga gctaagagaa
    20281 agacttaaag atttagttct tatgagtaag gaagaaatag agtttgaaaa tgaacaagat
    20341 gagtattgtc cttataaact catttataaa aaggaattaa aatgagtcaa tttgagcctt
    20401 ttttagcatt agaagcgagt gcaggaagcg gaaaaacctt tgccctgagt gtgcgttttg
    20461 tagcacttat tttaaaagga gctaggatta atgaaatttt agctttgact tttaccaaaa
    20521 aagctgctaa tgaaatgcaa aaaagaatta ttgagacttt tttaaactta gaaaaagaaa
    20581 ataaaaccag tgaatgcaat gaactttgca agcttttagg taaagataaa gaagagctta
    20641 tttctttaag agatgctaaa aaagaagaat ttttaagaac agagttaaaa atcagtactt
    20701 ttgatgcttt tttcggaaaa attttgcgtg tttttgcttt aaatttgggc ttaagtagtg
    20761 attttacaat gagtgaagag aggcttgatg taagagagat ttttttaaaa cttcttaaaa
    20821 aagatgaatt aaaagatttg gcttattata ttaatttagt tgatgagaaa gaaaattttt
    20881 ttaacgagct tgaaaaattt tatgagaatg cttattttca aaatcgtcct aaaattctaa
    20941 atccaactaa agcttatatc aataaagctt atagtgagtt aagaagttat tgtttgggtc
    21001 ttactcatgt aaaaaattat aaaaatttgt gtgacaattt caaaagtgaa gttttagatt
    21061 tatccgtgtt tatgcaatca agttttatga caaaatttga aagtacaaaa tatttacaag
    21121 atttagaaag tactaacctg cattttagtg caaaaagaat ggagcttata aatgctttaa
    21181 atacctatgc catagagctt gaaaattata aaattgctaa tttaatgaat cttttaaatc
    21241 attatagtga agctaaaaat atatttcata aagataaaaa taccttaaat ttccaagatg
    21301 tgagtaaaaa agtttatgag ttaataacca gtgaatttaa ggatatgatt tattttcgtt
    21361 tagatggttt tatttcgcat ttgcttattg atgaatttca agatacaagc gtgatccaat
    21421 atcaaatttt acgccctttg atcgctgagc ttgtttcagg agaaggggtt aagaaaaatc
    21481 gcactttttt ttatgtagga gataaaaaac aaagtattta tcgctttcgt aaaggaaaaa
    21541 aagaattatt tgatttgtta aaacaagaat ttagtcaaat taaaagtgat aatttaaata
    21601 ctaattatcg ttctaaagag cttttggttg attttgttaa tgaaactttt aaagaaaaaa
    21661 tcaaagatta taaagaacaa tttgccttag aaagtaaaaa aggcggtttt gtgcgtattg
    21721 tggagtctaa ggaacaaaag gttaaaaacc aagcccaaga aattaaggaa aagactttag
    21781 aaactttatt tgagcaaatt aattttttaa gatctaaaaa tatttcttat gatgatattt
    21841 gtattttgtg ttggaaaaat agtgatgcag atatggtttt ggatttttta agagagcaaa
    21901 atattcctgc atttactcaa agcaatgttt tacttgaaaa taaagcaagt gtaagacttg
    21961 ttttagaata tgctaaatat tgtatttttg gtgatgagtt ttacttggta tttttaaagg
    22021 aacttttagg ttttgagccg agaaaaatta cccttgattt ttcaaaaaat gctatggaaa
    22081 atgtactttt tttaataaaa gaattaaaac ttgatttaaa tgatatcgct ttaatacaat
    22141 ttatcgaata tgctaaaact aaggagaatt ttttaaagct tttatttgag ccttgtgctt
    22201 tgaaaatagt aagcgaacaa aatatgggaa ttagtattat gagtgtgcat aaatctaagg
    22261 gtttggaatt tgatcatgtg attttacttg atagtttatc taaaaacaat tcaaacaatg
    22321 aagatatcat gcttgaatat gatatcaatc aaggttggca actccatatt aaagataaaa
    22381 ttcgagagct tactaaagag cctatttata ctctttttaa agaaaatatt acaagagcaa
    22441 attatgaaga tgatattaat aaactttatg tggcttttac aagagctaag gaaagtttga
    22501 tcatcataaa aagaaatgaa gaaagtgtaa atggaaatta tccaagttat tttaaggggg
    22561 gatttttaaa tatacattct caagagagag gttttttaga aagcaaagaa caaattttaa
    22621 gcgttaaaaa agaaagcatt caaactttgc aaaaatttga aaaaattacc ttgcaagaaa
    22681 ttcaaagtga agaaaggctt gatagtaaag aactatattt tggaaatgct tttcactttt
    22741 ttatgcaaaa tttaaaactt cctaagggtg aaaattttca aatacttact caaagatgca
    22801 agagtaaatt tagacatttt ttagatgaga gtgattttga aaagcttttt aaaagaattg
    22861 aaattttact taaaaatatt caatttcaaa atttgattgg tgatggaaag cttttaaaag
    22921 aacaagcttt gagttttaat ggagaaatta aacaattaga cttgcttgct ttaaaagatg
    22981 aagaagcttt tataattgat t
//
LOCUS       DAPIWJ010000018        22259 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.018, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000018 DAPIWJ010000000
VERSION     DAPIWJ010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22259
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.018"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            111..1910
                     /locus_tag="RJ259_000528"
     CDS             111..1910
                     /locus_tag="RJ259_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin attachment protein"
                     /protein_id="HDV7366266.1"
                     /translation="MAKKFIDVMDTSFRDGFQSVYGARVLMDDFFPAVEAAKEAGITH
                     FEFGGGARFQSLYFYLNEDAFTMMDRFRAIVGKDANLQTLARGVNTVTLDTGSSELID
                     LHAKLFAKHGTTTIRNFDALNDINNLKFSGECIAKHRLKHEIAITLMDLPPNCKGAHD
                     VPFYEKILKEILAAEIPFHSICFKDASGTSNPNKIYETIKMARKILPQDMHIRLHTHE
                     TAGVSIACYLAALEAGVDGIDLAAAPVSGGTSQPDILTMMHALKGKDYDLGGLEEEKI
                     LKYEEVLKDCLKEYFLPPEATMVNPLIPFSPMPGGALTANTQMMRDNNILDKFPQVIH
                     AMREVVEKGGFGTSVTPVSQFYFQQAFNNVMFGSWKKIAEGYGKMVLGYFGKTPVAPD
                     ANIIELASKQLNLEPTTELAINIADKDESKSIAYTKTLLEKEGIETSEENIFVAAACK
                     EKGIAFLKGEAKVNIRKLASMPKPMSADENKFTVAVNGNKYHVEVSYGFDKDVNVKSV
                     KKVEENKNIISSNSTSSVDAENEVLAGISGNVFKIYVNEGEEVKSGQAIMVLEAMKME
                     IEVNAPKDGIILELCIKIGDTVNEGEVLAIYKN"
     gene            1923..3497
                     /gene="pckA"
                     /locus_tag="RJ259_000529"
     CDS             1923..3497
                     /gene="pckA"
                     /locus_tag="RJ259_000529"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HDV7366267.1"
                     /translation="MKKFDKLGLDNIKEIFHNLSYDELNAHEKANNEGLSTDNDTFCV
                     DTGIFTGRSPKDKYFVKQDPSSKYIAWGKVNQPITKELFDKLLTKAKQELSGKKIYVQ
                     DVFCGASLQSRKAVRFVTEIAWQAHFVKNMFIRPSQEELENFKADFIVYNACKCINED
                     YKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANV
                     GEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPE
                     HEPEIYGAIKRNALLENVVLRADKSVDYADASKTENTRVSYPIEHIENHEPSLKAGHP
                     KNIIFLSADAFGILPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPQATFSACFGEP
                     FMPLHPTVYARLLGEKIEKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGS
                     ITKCEFENFEVFDLAIPKALEGVESVLLNPINTWLDKNAYIATRDKLAHMFIQNFKRY
                     EDVKEGIEFSKFGPKI"
     gene            3507..4889
                     /gene="argH"
                     /locus_tag="RJ259_000530"
     CDS             3507..4889
                     /gene="argH"
                     /locus_tag="RJ259_000530"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HDV7366268.1"
                     /translation="MKNEMWSGRFSGASDELLKEFNASLNVDKTLFNEDIQGSIAHAT
                     MLESCGILKKEELDAIIKGLEQVRSEIEQGKFIFDIKDEDIHMAVEKRLSEIIGSEIG
                     GRLHTARSRNDQVATDFKLFVKKSHIELIKLLKELIQTMLEHAKVHKKTIMPSFTHLQ
                     HAQPVSFSFYILAYAFMLMRDIKRLQNSLELADFSPLGSCACAGTSYATNRELSAKIL
                     GFKDIMPNAMDGVSDRDFALDLLYDIAVIFTHTSRLCEEMILFSSSEFSFITISDSFS
                     TGSSIMPQKKNPDVCELIRGKTGRVYGNLISLLTIMKALPLAYNKDMQEDKEGIFDSV
                     KTAKDSLIILNAMLQEIQINKENMLNACKKGHLLATDLADYLVREKNIPFRKAHFIVG
                     NVVAQAEAQGIDISEIKDLSKIDPVFDEKAMELLNFEFSLNSKQSEGSSSIASVEKQI
                     QILEGFIQNL"
     gene            complement(4911..6014)
                     /gene="ychF"
                     /locus_tag="RJ259_000531"
     CDS             complement(4911..6014)
                     /gene="ychF"
                     /locus_tag="RJ259_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HDV7366269.1"
                     /translation="MSLSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAM
                     VEVPDLRLNELAKIVKPERIMHSLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVIL
                     HIVRCFDEENITHVEGGVDPLRDVEIINTELILADIEQLSKKIEKLTKEAKANQKGAK
                     ESLELANSLLDHLNKGLAASSYPEKESEIYQALIKELRLLSAKEVIYGANVDENGISE
                     DNDYVKALKEYAKKNDHEVIKLCAKIEEELVGLSDEESHEFLSSLGVNESGLDQIIRT
                     AFAKLGLISYFTAGVVEVRSWTIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDYIQY
                     KGENGAKEAGKLRLEGKDYIVLDGDVMHFRFNV"
     gene            complement(6011..7462)
                     /locus_tag="RJ259_000532"
     CDS             complement(6011..7462)
                     /locus_tag="RJ259_000532"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HDV7366270.1"
                     /translation="MKFELNDKKLDAIKADFELVFIQDKNLKIFNKEKDFFKLNNYKG
                     EGALLDLNNKKLYLELKSLAYEDIRLSLCTAYKTLEKLNIKSVKLPSIIGDCVVRSFA
                     SLVEGVLFGAYKFDKYKSEKKTSTLEKFIISNEELNGKKFNKDEAKIGLERGEILANA
                     TNFTKNIVNEIPEIYTPLKMAEDAQNLAKENKNIICKIYDEKFLAKEKMNAFLAVNHA
                     SVHPPRLIHLSYKAKNAKKRVVFVGKGLTYDSGGLSLKPADFMLTMKADKSGAAAAMG
                     IIKAVAELALDLEVHCILGATENMIGGNAYKPDDVLISREGVSIEVRNTDAEGRLVLA
                     DCLSFAQDLKPDLLIDMATLTGACVVGLGEFTSAIMGNNEELQNDFYLSSKKSGEYTT
                     ILHFNPHLRELIKSNIADVSNTASSRYGGAITAGLFLDKFIRKEYKDKWLHLDIAGPA
                     YTEKSWGYSSFGAGGAGVRMCVNYLIQILRKAK"
     gene            complement(7459..8055)
                     /locus_tag="RJ259_000533"
     CDS             complement(7459..8055)
                     /locus_tag="RJ259_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDV7366271.1"
                     /translation="MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHV
                     NLGFVIFIAGLGGFVGDQIYFYIGRYNKCYIQKKLKTQRRKFAVAHLLLQRFGWPIIF
                     IQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
                     AEEHWYYAAIIIIAFLSLLLFGFKQMEKAILKDKRKKS"
     gene            complement(8074..8622)
                     /gene="apt"
                     /locus_tag="RJ259_000534"
     CDS             complement(8074..8622)
                     /gene="apt"
                     /locus_tag="RJ259_000534"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HDV7366272.1"
                     /translation="MIKLTQEEQKYLLDSIRIIPDFPKKGIIFRDITTLLNNKEALNF
                     LLKHLKERYKDYNLDFIAGTESRGFIFASMICAKLNLPFVPIRKPGKLPFETFSCEYD
                     LEYGSDKVELHKDAFKNIQNARVLLVDDLIATGGTAIASYELIQKAGAKCVEACFLIN
                     LKDLNGANKLEKLTSVYSVLEI"
     gene            complement(8619..8951)
                     /locus_tag="RJ259_000535"
     CDS             complement(8619..8951)
                     /locus_tag="RJ259_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366273.1"
                     /translation="MFTNWLVLTILICATIYLIVMLFYYKTLLNKEKTSKDFIKNNLD
                     DTEIVIRKLQIQLQRSLGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKEL
                     EAKIEALL"
     gene            complement(8951..9388)
                     /gene="rpiB"
                     /locus_tag="RJ259_000536"
     CDS             complement(8951..9388)
                     /gene="rpiB"
                     /locus_tag="RJ259_000536"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HDV7366274.1"
                     /translation="MLREKIYIASDHAGFELKEKICVFLKEKNIIFNDLGTNTCASCD
                     YPDYAHLLAEKINKRSFGILICGSGIGISIAANRHKNIRCALCHESLSAELARRHNDA
                     NVLALGGRLIGVELAIDIIEKFIQTPFEEGRHMQRIQKIEVKI"
     gene            9554..10108
                     /locus_tag="RJ259_000537"
     CDS             9554..10108
                     /locus_tag="RJ259_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HDV7366275.1"
                     /translation="MKLILIGSSTGGPNQLKFLLKDIDVKNTCVVIAQHMSASFIPSF
                     VGQFNKEAFSEVCLLNDKEILSNKIYICPKNTILSGNLNIVAAWQDVASSFKPSVDLL
                     FHSAVSLAKTNKILAIILTGMGDDGAKGLFELYKTGVRCLCENEADSVVYGMPKRAKD
                     MNPHLKPMSLKEIKKEIVNFIDQD"
     gene            10124..10912
                     /locus_tag="RJ259_000538"
     CDS             10124..10912
                     /locus_tag="RJ259_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HDV7366276.1"
                     /translation="MEKKITPSELELNEFIKIINEMSGIDLTDKKNILALKLNKFLEG
                     TNTKNFSEFLGKLKSNRQLKQETLDFVTIGETYFLRELAQLKEIIYYAKSLEKRVNIL
                     SAPCSSGEEVYSLALLAAQNFIKDMYILGVDINSSVIEKAKLGKYQGRTLQRLSESEK
                     RRFFLESEDKFYTINKNELCTCKFELCNVFEEKFSRLGKFDIIASRNMIIYFDHESKL
                     KLMERFHRILNDKGRLYVGNADLIPETIYFKKIFSPRGVYYEKV"
     gene            11048..11776
                     /locus_tag="RJ259_000539"
     CDS             11048..11776
                     /locus_tag="RJ259_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDV7366277.1"
                     /translation="MIELKNVNKYYGTHHVLKNINLSVKEGEKLVIIGPSGSGKSTTI
                     RCMNGLEEVSSGEVVVNNLVLNHKNKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPM
                     KLQKKSKKEAEETAFKYLKVVGLLDKANVYPATLSGGQQQRVAIARSLCTKKPYILFD
                     EPTSALDPETIQEVLDVMKEISHQSNTTMVVVTHEMGFAKEVADRIIFMEDGAIVEEN
                     IPSEFFSNPKTERARLFLGKILKN"
     gene            11798..12577
                     /gene="peb1A"
                     /locus_tag="RJ259_000540"
     CDS             11798..12577
                     /gene="peb1A"
                     /locus_tag="RJ259_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adhesin/ABC transporter
                     aspartate/glutamate-binding protein PEB1a"
                     /protein_id="HDV7366278.1"
                     /translation="MVFRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGV
                     KNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSV
                     DAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKYKSLADMKGANIGVAQAATTK
                     KAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS
                     FEPQSYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKKWGL"
     gene            12579..13331
                     /locus_tag="RJ259_000541"
     CDS             12579..13331
                     /locus_tag="RJ259_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7366279.1"
                     /translation="MNESVGFVEHLRQILTSWGLYDENSISPFAVWKFLDALDNKDAF
                     INGFIYTLEVSILALLIATIFGTIGGVMATSRFKIIRAYTRIYVELFQNVPLVIQIFF
                     LFYALPVLGIRLDIFTIGVLGVGAYHGAYVSEVVRSGILAVPRGQFEASASQGFTYIQ
                     QMRYIIVPQTIRIILPPMTNQMVNLIKNTSVLLIVGGAELMHSADSYAADYGNYAPAY
                     IFAAVLYFIICYPLAYFAKAYENKLKKAHLTR"
     gene            13342..14001
                     /locus_tag="RJ259_000542"
     CDS             13342..14001
                     /locus_tag="RJ259_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7366280.1"
                     /translation="MENVFNAQNIEFLMQGLFLTLKIALATCIISIVFGTFLAITKNY
                     GDRLSKFLAACYIDIFRNTPLLLWMLAACFVLPVFFGQFPQAFWGTIGFSLYTSSVMA
                     EIIRGGLNSIPKGQFEAAYSQGFGKFFTLFYIILPQTFRKIIPALLSQIVTTVKDTAY
                     LAGLGIAELTYNSKTILAKLTSFEEILAMIGVVAGIYFIICFSLSMLVRYYAKKTAYI
                     S"
     gene            14109..15038
                     /locus_tag="RJ259_000543"
     CDS             14109..15038
                     /locus_tag="RJ259_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HDV7366281.1"
                     /translation="MRGYKIFSGSANVEFARQVSKYLSLPLSDAGVKRFSDGEISVQI
                     DESVRGKDVFIIQSTCAPTNDNLMELLILTDALRRSSANSITAIIPYFGYARQDRKAN
                     PRVPITAKLVANLIQAAGIDRVATIDLHAGQIQGFFDIPVDNLYGSIVFNDYIKAKHF
                     KNAIIGSPDIGGVARARSVAKHLGLDIVIVDKRREKANESEVMNIIGDVKDKEVILVD
                     DIIDTAGTIVKAAEALKEKGAKSVMACCTHAVLSGKAYERIASGVLDELVVTDTIPLK
                     EQLPNIKVLSVTPVFAEVIRRVYHNESVNSLFI"
     gene            15205..17316
                     /locus_tag="RJ259_000544"
     CDS             15205..17316
                     /locus_tag="RJ259_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HDV7366282.1"
                     /translation="MTQLSTKILWLFVAALGAICFGYLALQNGESVSAIYLVVAAVCI
                     YMIGYRFYGSFVAYKVLELDKNRATPALVENDGRDFVPTNKAVLFGHHFAAIAGAGPL
                     VGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRKGRSLGEMIKDEMGKFTG
                     GVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGIYMRFIRPGRV
                     GEASIIGFVLLILAIHYGSVIAADPYWAKIFTLEAPTLAIVMMAYGFIASVLPVWFLL
                     APRDYLSTFLKIGVIVVMAVAIVLVAPDLQMPKANTQYFDGTGPVFAGGVFPFLFITI
                     ACGAISGFHALISSGTTPKMLENETHTLAVGYGSMLAESAVAIMALICACILHPGLYF
                     AINSSSALIGTDVVNVAQTISSWGFSITPEEITTLTTNIGEYTILSRTGGAPTFAIGV
                     ALILHELFGGVDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDILGNVYKPLGDI
                     HNYPAGLLATALSVAGWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGMALLLATTIL
                     VKMGKARYTWVTLVPAVFVLVATLYGGIQKIMPYEEGNKIANAVSHVAAVSIQSQKIK
                     DLEFKLNNTKDEKEISTIRKEISIATQNKVGNLLNAILCVFFMIATLLVIISCIGICL
                     GKIKIPLKETKYIKIDEFQKI"
     gene            17297..17494
                     /gene="kcuS"
                     /locus_tag="RJ259_000545"
     CDS             17297..17494
                     /gene="kcuS"
                     /locus_tag="RJ259_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_148936501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KCU-star family selenoprotein"
                     /protein_id="HDV7366283.1"
                     /translation="MNFKKFKYYYEKAERFFHPLVGLSSYDKYLEHMKQKHPGKIPKT
                     RGEFFKECLDKKYNSGGLNKC"
     gene            complement(17534..17947)
                     /locus_tag="RJ259_000546"
     CDS             complement(17534..17947)
                     /locus_tag="RJ259_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HDV7366284.1"
                     /translation="MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAAREL
                     SPERVVTISMDKVVFKEPVFIGDIISCYSKVVNVGNTSISVEVEVTAQRVDSQGCTSC
                     INVTSALVIYVSVTRDGKKNPISEELKRIHGFLNA"
     gene            18009..19841
                     /gene="ciaB"
                     /locus_tag="RJ259_000547"
     CDS             18009..19841
                     /gene="ciaB"
                     /locus_tag="RJ259_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HDV7366285.1"
                     /translation="MNNFKEIAKLVRKYKERNNALYEFLDKEDVGEYFRSLISLSELK
                     QDKTTMLAILRRLIDLKEENLVQEWKKNNFKEDKIIELKHKFYEEVRKFYEKEHQNLI
                     NEIKEKKLLNNFYQSLIQGVHNIGLIMNIFEISWTKEIIEKNNKILSTQFPNLDDAME
                     FLRKNHLYQKTPEGEICERSYGVLVRIGNLWKFVPYARFFENEILKLEFAFENMIDQL
                     KIFASSEEEKAYIEYFEKLKLAFCEKDEDRVIKAWQEAEFAWMKVKSPLQVGHPLEYY
                     EDNYTHAVALEWDIRIEDENDFDVLKFGNEIKESFEHVYKNIGLEDCELEKEVLSNIE
                     KTQLYICTPMIFYGAELKGLSSAQVVPNDEFVSSKAGKKIFAFINFVYENAKTKPFMK
                     ISSEVFDKEFLDFGRNILFYQEKIWKRVYEVSTIGHEFGHIFFIANDTEKTMNQSGFF
                     KNIEEYKATTGGLINFFYHEQDDLIMPVFHELIKRAIGLISWQRVDEVRPYYTEGLIH
                     LSLLFESEVLIFENNNLKINFDLGYYEKFKELTLKNYHELAKHYALRLDAKEFLSRFC
                     EIEDNIFLPIMPKCKEFVKFYYDLYEKIGNEIDNSGEFERYKKK"
     gene            19943..20239
                     /locus_tag="RJ259_000548"
     CDS             19943..20239
                     /locus_tag="RJ259_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HDV7366286.1"
                     /translation="MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISF
                     IGFGTFSTQERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKKK"
     gene            20366..21265
                     /gene="cysM"
                     /locus_tag="RJ259_000549"
     CDS             20366..21265
                     /gene="cysM"
                     /locus_tag="RJ259_000549"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HDV7366287.1"
                     /translation="MKVHEKVSELIGNTPIIHLKKFGINVFAKCEFLNPSHSIKDRAA
                     FEMIKDALDSKKINQDTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMI
                     TLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILR
                     DLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQG
                     IGANFIPAILNKEVIDEVITVSNEDAINTAKELAKSGLMVGISSGANVFAASMLAKKF
                     PDKRILTMLNDTAERYLSTDLFA"
     gene            complement(21272..21832)
                     /locus_tag="RJ259_000550"
     CDS             complement(21272..21832)
                     /locus_tag="RJ259_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HDV7366288.1"
                     /translation="MKKNIILFIVIVAIILGVIFFIKNHQNSYDFILKSDLKEETTLK
                     DFKGDKLIIYFGYTYCPDVCPATLSLVGKALKQINNPKAHLLFISLDPNRDNNLSNTN
                     EWLRYFYPKADALIAKDEKTLQKITKQYNVQYQKIDLNDSFMGYSIAHSNMLYLIDEK
                     GHFYKEINDLNPQEILRELRIFLNSQ"
     gene            complement(21829..>22259)
                     /locus_tag="RJ259_000551"
     CDS             complement(21829..>22259)
                     /locus_tag="RJ259_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366289.1"
                     /translation="AFAFVIAILYIIFDFYVIKDSQKITKTDFSTPLTCDLNVKDCTY
                     SFNNKKVLISLNPKPLQSLDVTNLKIVNLGNYNNLGIKIYGLNMYMGEIKPKIHRLNS
                     TDYESKIVLAACVLDTMRFRVEFMDNNKPIGFYFDFELKK"
BASE COUNT         7632 a         2947 c         3919 g         7761 t
ORIGIN      
        1 cttaatttgg ttgtttttta ttcgttttat atcgcctata gcaataattt tggtaatgtg
       61 ttatcaaatt tttgtataat aatgaaaaaa tattttttta aggaaaaata atggctaaaa
      121 aattcatcga tgtaatggat acaagcttta gggacggttt tcagtctgtt tatggagcta
      181 gggttttaat ggatgatttt tttcctgcag tagaagcagc aaaagaagcg ggtattactc
      241 attttgaatt tggtggtggt gctagatttc aaagcttgta tttttatctt aatgaagatg
      301 cttttaccat gatggataga tttagggcta ttgtaggaaa agatgctaat cttcaaactt
      361 tagcaagagg ggttaatact gttactttag atactggaag tagtgagctt attgatttgc
      421 atgcaaaact ttttgcaaaa cacggtacca caacgataag aaattttgat gctcttaatg
      481 atataaataa tttaaaattt agtggtgaat gtatagcaaa acatagatta aaacatgaaa
      541 tcgctattac cttaatggat ctaccgccaa attgcaaagg tgctcatgat gtgccttttt
      601 atgaaaaaat tttgaaagaa attttagcag cagaaattcc ttttcacagc atttgtttta
      661 aagatgcaag tggaacttca aatccaaata aaatttatga aaccattaaa atggcaagaa
      721 aaattttacc tcaagatatg catattagac ttcatacgca tgaaactgca ggggtgagta
      781 tagcctgcta tcttgcagca cttgaagcag gtgttgatgg tatcgatttg gctgcagctc
      841 ctgtaagtgg tggaacttct cagcctgata ttttaaccat gatgcatgcc ttaaaaggta
      901 aagattatga tttaggtgga cttgaagaag aaaaaattct aaaatacgaa gaagttttaa
      961 aagattgttt aaaagagtat tttttacccc ctgaagctac tatggtaaat ccacttattc
     1021 ctttttctcc tatgccagga ggagctttaa cggcaaatac acaaatgatg agggataata
     1081 atattttaga taaatttcca caggtcattc atgctatgag agaagttgta gaaaaaggtg
     1141 gatttggtac ttcggttact ccagtttctc aattttattt tcaacaagca tttaataatg
     1201 ttatgtttgg gtcttggaaa aaaatcgcag aaggttatgg aaaaatggtg cttggttatt
     1261 ttggaaaaac tccagttgca cccgatgcaa acattattga gcttgcttca aaacaactta
     1321 atttagaacc tactacagag cttgctataa atatagctga taaagatgag agtaaaagta
     1381 tagcttatac caaaaccttg cttgaaaaag agggtataga aacgagtgaa gaaaatatat
     1441 ttgttgcagc agcttgcaaa gaaaaaggta tagcattttt aaaaggagag gcaaaggtaa
     1501 atatacgcaa attagccagt atgccaaaac ctatgagtgc agatgaaaac aaatttaccg
     1561 tagctgtaaa tggtaataaa tatcatgtag aagtaagcta tggctttgat aaagatgtta
     1621 atgttaaaag tgtgaaaaaa gtagaagaaa ataaaaatat tatttcttca aattcaacaa
     1681 gttctgtaga tgctgaaaat gaagttttag caggtatttc aggtaatgtc tttaaaattt
     1741 atgttaacga aggcgaagaa gtaaaatcag gtcaagctat catggtttta gaagcaatga
     1801 agatggagat tgaggttaat gccccaaaag atggaattat tttagagctt tgtattaaaa
     1861 taggtgatac tgttaatgaa ggcgaagtat tagctattta caagaattaa agtgagggaa
     1921 aaatgaaaaa atttgataag ttaggtttgg ataatataaa ggaaattttt cataatttaa
     1981 gttatgatga attaaatgct catgaaaaag caaataatga aggtttaagc acggataatg
     2041 atactttttg tgtagataca gggattttta caggtagaag tcctaaagat aaatattttg
     2101 taaaacaaga tccatctagt aaatatatag cttggggaaa ggtaaatcag cctattacaa
     2161 aagaattatt tgataaactt ttaactaaag caaagcaaga attaagcgga aagaaaattt
     2221 atgttcaaga tgttttttgc ggtgcttctt tgcaaagtcg caaagcagta agatttgtta
     2281 ctgaaattgc atggcaagcg cattttgtta aaaatatgtt tattcgccca agtcaagagg
     2341 aacttgagaa ttttaaagca gattttattg tttataatgc ttgcaaatgc atcaatgaag
     2401 attacaaaca agatggttta aattcagagg tttttgtgat ctttaatgtt gaagaaaata
     2461 tagcggttat tggtggaact tggtatggtg gagaaatgaa aaaaggtatt ttttctatga
     2521 tgaattattg gttaccacta gaaaataaac tttctatgca ttgtagtgca aatgtcggag
     2581 aaaaagacga tgtggcactt ttctttggac ttagcggtac aggaaaaact acgctttcaa
     2641 ccgatccaaa aagaagactc ataggtgatg atgagcatgg gtgggatgat gaaggtgtgt
     2701 ttaattttga gggcggttgc tatgcaaaaa caatcaatct tgatcctgaa catgagcctg
     2761 aaatttatgg agctattaaa agaaatgcac ttttagaaaa tgtagtttta agagctgata
     2821 agagtgttga ttatgctgat gcctcaaaaa cagaaaacac gagagtttct tatcctatag
     2881 agcatattga aaatcatgag cctagtctaa aagcagggca tccaaaaaat attatatttt
     2941 taagtgcaga tgcttttgga attttacccc cggtaagcaa actaagcaaa gagcaggcta
     3001 tgtattattt tttaagtggc tatacagcaa aagtagctgg aactgagcgc ggtataacag
     3061 agcctcaagc aactttttca gcttgttttg gagaaccttt tatgccttta catccaacgg
     3121 tttatgcgag attgcttggt gaaaagattg aaaaacatga agttaatgtt tatcttgtta
     3181 atacgggttg gagtggcgga agctacggtg tgggtaaaag aatgagcatt aaggctacta
     3241 gggcttgcat taatgccatt ctagatggaa gtattacaaa atgcgaattt gaaaattttg
     3301 aagtgtttga tttagctatt ccaaaagctt tagaaggtgt agaaagtgta cttttaaatc
     3361 ctataaatac ttggttagat aaaaatgctt atattgcaac aagagataaa ttagcacata
     3421 tgtttataca aaattttaaa cgttatgaag atgtcaaaga aggcattgaa tttagcaaat
     3481 ttggaccaaa aatttaaggc atttaaatga aaaatgaaat gtggtcagga cgttttagtg
     3541 gtgcaagtga tgagctttta aaagaattta atgcaagttt aaatgtagat aaaactttgt
     3601 tcaatgaaga tatacaaggt tctatagcac acgctacaat gcttgaaagt tgtggtattt
     3661 taaaaaaaga agaattagat gctattataa aaggtttaga gcaggttaga agtgaaatag
     3721 agcaaggtaa atttattttt gatattaaag atgaagatat tcatatggct gtagaaaagc
     3781 gtttaagcga gattataggt agtgaaattg gcggaagact acatactgca agaagtagaa
     3841 atgaccaagt ggctactgat tttaaacttt ttgtaaaaaa atctcatatt gaactcataa
     3901 agcttttaaa agaattgatt caaaccatgc tcgaacatgc taaagtgcat aaaaaaacta
     3961 ttatgccaag ttttacacat ttacagcacg ctcagcctgt gagtttttct ttttatattt
     4021 tagcttatgc ttttatgtta atgcgagata ttaagcgttt gcaaaatagc ctagaacttg
     4081 cagacttttc accacttgga tcttgtgcat gtgcaggaac aagctatgct accaatcgtg
     4141 agttgagtgc taaaatttta ggatttaaag atattatgcc aaatgctatg gatggagtga
     4201 gtgataggga ttttgctctt gatttgcttt atgatatagc agttattttt acacacactt
     4261 caagactttg tgaggaaatg attttatttt caagctcaga attttctttt ataaccataa
     4321 gtgatagttt ttcaacggga agttctatta tgcctcagaa aaaaaatcct gatgtttgtg
     4381 agcttatacg tggaaaaaca gggcgtgttt atggaaattt gatttctctt ttaactataa
     4441 tgaaagcttt acctttagcc tataataaag atatgcaaga agataaagaa gggatttttg
     4501 atagtgtaaa aaccgctaaa gatagcttaa tcatcttaaa tgcaatgcta caagaaatac
     4561 aaattaataa agaaaatatg cttaatgctt gtaaaaaagg tcatttattg gctaccgatt
     4621 tggcagatta tttggtgcgt gaaaaaaata ttccttttag aaaagcacat tttatagtgg
     4681 gaaatgttgt tgcacaagct gaagcacaag gtattgatat aagtgaaatt aaagatcttt
     4741 caaaaataga tcctgtattt gatgaaaaag ctatggaact tttaaatttt gaattttctt
     4801 taaattctaa gcaaagtgaa ggctcaagtt ctattgcaag cgtagaaaag caaattcaaa
     4861 ttttggaagg ttttattcaa aatttataaa tattgtttag gctattttgc ctaaacattg
     4921 aatctaaaat gcattacatc gccatctaaa acgatatagt cttttccttc aaggcgtagc
     4981 tttcctgctt ctttggcgcc attttcgcct ttgtattgga tataatcttc ataggaaata
     5041 acttcagctt ttataaagcc tttttcaaag tcattgtgaa ttacacttgc tgcttttggt
     5101 gctttccagc cttttttgat tgtccaagaa cgcacttcaa ctacaccagc ggtaaaataa
     5161 ctgatcagtc caagcttagc aaaagcagtg cgtatgattt gatcaagacc gctttcgtta
     5221 actcctagag aacttaaaaa ttcatgactt tcttcatcgc ttaatcctac taattcttct
     5281 tcgatttttg cacaaagctt gataacttca tgatcatttt ttttagcata ttcttttaaa
     5341 gcttttacat aatcattatc ttcactaata ccattttcat caacatttgc accataaatc
     5401 acttctttag cagaaagcag tcttaattct ttgattaagg cttgataaat ttcactttct
     5461 ttttcagggt aagaacttgc agctaagcct ttgtttaaat gatcaagtaa ggaatttgca
     5521 agttcgagac tttctttagc acccttttga ttggctttgg cttctttggt gagtttttct
     5581 atttttttac tcagttgttc aatatctgct aaaataagct ctgtattgat aatttctaca
     5641 tcacgtaaag gatcaactcc accttcaaca tgggtaatat tttcttcatc aaaacaacgt
     5701 actatatgca aaataacctc agtttcacgt atatttgaaa gaaatttatt tcccaagcct
     5761 tcgcctttac ttgcgccttt aacaagtcca gcgatatcta caaattctat taaagaatgc
     5821 ataattcttt caggttttac tattttagca agttcattaa gtcttaaatc aggaacttca
     5881 accatggctt tattaggctc tatggtgcag aaaggatagt ttgcactttg ggcattttgt
     5941 gctttagtta aagcattaaa agttgttgat ttgccaacat ttggaagtcc tactatacct
     6001 acgcttaaac tcatttagct ttccttaaaa tttgaattaa ataattaaca cacattctaa
     6061 ctccagctcc acctgcgcca aaactagaat atccccaaga tttttctgta taagcaggtc
     6121 ctgctatatc aagatgtagc catttatctt tatattcttt acgaataaat ttatctaaaa
     6181 ataaccctgc ggtaattgca cctccgtagc gactagaggc agtattacta acatcggcaa
     6241 tatttgattt tataagttct cttaagtgag ggttgaaatg taagattgtg gtatattctc
     6301 cgcttttttt agagcttaga taaaaatcat tttgcaattc ctcattattt cccataatag
     6361 cgcttgtaaa ttctccaagt cctacaacac aagctccagt aagagttgcc atatcgataa
     6421 gtaaatcagg ttttaaatcc tgtgcaaaag aaagacaatc agctaaaacc aagcgtcctt
     6481 ctgcatctgt atttcttact tctatgctta caccttcacg actgattaac acatcatcag
     6541 gcttataagc attgccgcct atcatatttt cagttgcgcc caaaatgcaa tgcacttcta
     6601 aatctaaagc aagttcagct acggctttta tgattcccat tgctgctgct gcaccgcttt
     6661 tatcagcttt cattgtaagc ataaaatcag ctggttttaa gcttaatcca ccgctatcgt
     6721 aagttaagcc ttttccaaca aatacaacac gtttttttgc atttttggct ttatagctta
     6781 gatgaatgag gcgtggtggg tgtaccgagg catgatttac cgctaaaaag gcattcattt
     6841 tttctttggc taaaaatttt tcatcataaa ttttacaaat aatgttttta ttttctttag
     6901 ctaaattttg cgcatcttct gccattttta aaggggtgta aatttcagga atttcattga
     6961 ctatattttt agtaaaattt gtagcattgg ctaaaatttc tccacgctct aaacctatct
     7021 tagcttcatc tttattaaat ttcttaccat ttaattcttc gtttgaaata ataaattttt
     7081 ccaaagtact tgtttttttc tcgcttttat atttgtcaaa tttataagct ccaaaaagta
     7141 cgccttcaac taaagatgca aaacttctaa ctacacaatc tcctattatg ctaggaagtt
     7201 ttacgctttt aatattaagt ttctcaagag ttttatatgc tgtgcaaaga cttaatctta
     7261 tatcctcata agcaagactt ttaagctcta aataaagctt tttattgttt aagtctaata
     7321 atgcaccttc gcctttgtaa ttattaagtt taaaaaaatc tttttctttg ttaaaaattt
     7381 ttaaattttt atcctgtata aaaacaagtt caaagtctgc ttttatagca tctagttttt
     7441 tatcgtttaa ttcaaatttc atgatttttt ccttttatct ttaagtatag ctttttccat
     7501 ttgtttaaaa ccaaataata aaagggataa aaaagctata ataataatgg ctgcataata
     7561 ccaatgttct tcagcccaag tcaccatctt ccaaatttgt tctccaaaat accaagctaa
     7621 aagtatagtg attgatgccc aaacccaagc actaaaaaga ttgataatag caaatttttt
     7681 tgcactataa cgcgtgattc ctatactcat aggtataatg gttctaaagc catacatata
     7741 gcgttgtata aaaataatag gccaaccaaa acgttgtaaa agtaggtgtg ctactgcaaa
     7801 tttacgcctt tgagttttta attttttttg tatgtagcat ttattatatc ttcctatata
     7861 gaagtaaatt tgatcgccta caaaaccgcc aagacctgct ataaatataa caaagcctaa
     7921 atttacatgt ccttgatggg caaaaatacc agctaaaatt aaagctaact ctccttctaa
     7981 aatgcaccat aaaaaaataa taatataagc tagatctttg tattggtaaa gtaaattttt
     8041 taaaaattct tccatttgta cctttctata gttttaaatt tctaaaacac tataaactga
     8101 agtaagtttt tcaagtttat ttgctccatt taaatcttta agatttatta aaaaacaagc
     8161 ttcaacacat tttgctccag ctttttgaat gagttcatat gaagctatag ctgttccgcc
     8221 agttgctatt aaatcatcta caagtaaaac tcttgcattt tgaatatttt taaatgcatc
     8281 tttatgaagt tctactttat cgctgccata ttcaagatcg tattcgcagc taaaggtttc
     8341 aaaagggagt tttccaggtt ttctaatagg cacaaaagga agattaagtt ttgcacaaat
     8401 catagatgca aagataaatc ctctgctttc tgttcctgct atgaagtcta gattgtaatc
     8461 tttgtagcgt tcttttaaat gtttaagtag aaaatttaaa gcctctttgt tatttagtag
     8521 agtggtaata tctctaaaaa taattccttt ttttggaaaa tcaggaataa tcctaatgct
     8581 atcaagcagg tatttttgtt cttcttgtgt tagttttatc ataataatgc ctcaattttt
     8641 gcttctaatt ctttaattct ttgtcttagt ttgtcatttt ccaagcgata ttgagaattt
     8701 ctggttctta aagatgtaag gtctgctttg attttattaa gttcttctgt gagtatatct
     8761 atatttccaa gacttctttg aagttgaatt tgtagttttc taatgacaat ctcagtatca
     8821 tcaagattgt ttttgataaa atcttttgat gttttttctt tattaagtag agttttatag
     8881 taaaacaaca ttacaataag atagatagtt gcacaaatca atatagttaa aacaagccag
     8941 tttgtaaaca ttatattttt acctcaattt tttgaattct ttgcatatgt ctcccttctt
     9001 caaaaggagt ttgaatgaat ttttctataa tatctatagc taattcaacc ccaattaatc
     9061 ttccgcctaa tgccaaaaca ttggcatcat tatgccttct tgcaagttct gcacttaagc
     9121 tttcgtggca taatgcacaa cgaatgtttt tatgacgatt tgctgcaata gaaattccaa
     9181 ttccacttcc acaaataaga atgccaaagc tccgtttgtt tattttttcg gcaagtaaat
     9241 gcgcataatc aggataatcg cagcttgcgc aagtgtttgt tcctaaatcg ttaaaaatta
     9301 tatttttttc ttttaaaaat acgcaaattt tttcttttaa ttcaaaacca gcatgatcac
     9361 tagcaatata aattttttcc ctaagcattg gtttcctaat tactatataa aataagataa
     9421 aaacctaatc ttatcatatt aaatcataaa aacagctttt ctttgtttta aaaataagct
     9481 ttatttttct ttatatatgt tagaatcatg tgacaagaaa aataaaattt caataaatta
     9541 agaggagaag aaagtgaagc tcatactcat aggatcttca acaggtggtc ctaatcagct
     9601 taaatttctt ttaaaggata ttgatgtaaa aaatacttgt gtagttatag ctcagcacat
     9661 gagtgccagt tttattccat cttttgtggg gcaatttaat aaagaagctt ttagtgaagt
     9721 gtgcttattg aacgataaag agatattaag caataaaatt tatatttgcc ctaaaaatac
     9781 tattttatct ggaaatttaa atattgtagc cgcttggcaa gatgtggctt caagctttaa
     9841 accgagtgtg gatttacttt ttcattccgc tgtttctttg gcaaaaacaa ataaaatact
     9901 tgctattatt ttaacgggca tgggagatga tggcgcaaaa ggtttatttg agctttataa
     9961 aacaggagtt agatgtttat gtgagaatga agcagatagc gtcgtttatg gtatgccaaa
    10021 aagagcaaaa gatatgaatc cgcatttaaa acctatgagc ttaaaagaaa ttaaaaaaga
    10081 aattgtaaat tttattgatc aggattaata aaaggaaaat tgcatggaaa aaaaaataac
    10141 tcctagcgaa ttggaactta atgaatttat aaaaattatc aacgaaatga gtggtattga
    10201 tttaaccgat aaaaaaaata tactagcttt aaagttgaat aaatttcttg aaggaactaa
    10261 tactaaaaat ttttccgaat ttttgggaaa attaaaaagc aatagacaac ttaaacaaga
    10321 aactttagat tttgtaacca taggtgaaac ttatttttta agagaattgg ctcaattgaa
    10381 agaaataatt tattatgcca aaagcttaga aaagagagta aatatcctaa gcgccccttg
    10441 ttcaagtgga gaagaagtat attctttggc attattggct gcacagaatt ttattaaaga
    10501 tatgtatatt ttaggcgttg atattaattc aagtgtgatt gaaaaagcaa aacttggaaa
    10561 atatcaagga agaactttac agcgattgag cgagagtgaa aaaagaaggt tttttttaga
    10621 aagcgaagat aaattttata ctattaataa aaatgagctt tgtacttgta aatttgaact
    10681 ttgcaatgtt tttgaagaaa aattttcaag attgggaaaa tttgatatta tagcttctag
    10741 aaatatgatt atttattttg atcatgaatc aaaactaaaa cttatggaga ggtttcatag
    10801 aattttaaat gataaaggaa ggctttatgt tggcaatgct gatttaattc cagagactat
    10861 ttattttaaa aagattttct ctccaagagg tgtttactat gaaaaagtat aaattctaaa
    10921 aattactaaa agttacactt tggaaattta ttagtaaaaa taagttacat tttgaagtag
    10981 ttttctttat ttaatgataa aataatttca attaatttta tatttagcta aaaataaagg
    11041 aaaaaacttg attgaattaa aaaatgtaaa caaatactac ggaactcatc atgttctaaa
    11101 gaatattaat ctttctgtta aagaaggtga gaagcttgtt attataggtc caagtggaag
    11161 tggaaaaagt acaactatcc gttgcatgaa tgggcttgaa gaagttagtt caggagaggt
    11221 cgtagttaac aatcttgttt taaatcataa aaataaaatt gaaatttgcc gaaaatattg
    11281 tgcaatggtt tttcagcatt ttaatttata tccacatatg acggttttgc aaaatttgac
    11341 cttagctcca atgaaacttc aaaaaaaatc taaaaaagaa gctgaagaaa cagcttttaa
    11401 gtatttaaaa gttgtaggtt tgctggataa agcaaatgtt tatccagcaa ccctttcagg
    11461 tggacaacaa caacgcgttg ctatagcaag atcactttgt actaaaaaac cctatatttt
    11521 atttgatgaa cctacttcag cccttgatcc agaaaccata caagaggttt tagatgtaat
    11581 gaaagaaatt tcacatcaaa gcaatactac catggtggtt gttacacacg aaatgggttt
    11641 tgcaaaagaa gtagcagata ggattatttt tatggaagat ggtgctattg tggaagaaaa
    11701 tattcctagt gaatttttct caaatccaaa aactgaaaga gcgcgactct ttttagggaa
    11761 aattcttaaa aattaaccaa aattgaaagg agaaaaaatg gtttttagaa aatctttgtt
    11821 aaagttggca gtttttgctc taggtgcttg tgttgcattt agcaatgcta atgcagcaga
    11881 aggtaaactt gagtctatta aatctaaagg acaattaata gttggtgtta aaaatgatgt
    11941 tccgcattat gctttacttg atcaagcaac aggtgaaatt aaaggtttcg aagtagatgt
    12001 tgccaaattg ctagctaaaa gtatattggg tgatgataaa aaaataaaac tagttgcagt
    12061 taatgctaaa acaagaggcc ctttgcttga taatggtagt gtagatgcgg tgatagcaac
    12121 ttttactatt actccagaga gaaaaagaat ttataatttc tcagagcctt attatcaaga
    12181 tgctataggg cttttggttt taaaagaaaa aaaatataaa tctttagctg atatgaaagg
    12241 tgcaaatatt ggagtggctc aagctgcaac tacaaaaaaa gctataggtg aagctgctaa
    12301 aaaaattggc attgatgtta aatttagtga atttcctgat tatccaagta taaaagctgc
    12361 tttagatgct aaaagagttg atgcgttttc tgtagacaaa tcaatattgt taggttatgt
    12421 ggatgataaa agtgaaattt tgccagatag ttttgaacca caaagttatg gtattgtaac
    12481 caaaaaagat gatccagctt ttgcaaaata tgttgatgat tttgtaaaag aacataaaaa
    12541 tgaaattgat gctttagcga aaaaatgggg tttataatat gaatgaaagt gtaggttttg
    12601 ttgaacattt aagacaaatt cttacttctt ggggtttata tgatgaaaat agtataagcc
    12661 cttttgcggt atggaaattt ttagatgctt tggataataa agatgctttt attaatggtt
    12721 ttatttatac tttagaagta agcattcttg ctttgcttat agctacaatt tttggaacta
    12781 taggcggagt tatggctaca agtagattta aaattatcag agcctacact agaatttacg
    12841 tagagctttt tcaaaatgtt cctttggtaa tacaaatttt ctttttgttt tatgccttgc
    12901 ctgttttagg tataaggctt gatatattta ctattggtgt attgggtgtt ggggcgtatc
    12961 acggagctta tgtaagcgag gtggttagaa gtggaatttt ggctgtgcca agaggtcagt
    13021 ttgaagcttc tgcgtctcaa gggtttactt atattcaaca aatgcgttat attatagtac
    13081 ctcaaaccat tagaattatt ttaccaccga tgacaaatca aatggtaaat ttaattaaaa
    13141 atacctctgt attgcttatt gtaggtggag ctgagttaat gcattctgct gatagttatg
    13201 cagctgatta tggaaattat gcgccagctt atatatttgc agcggtttta tattttataa
    13261 tttgctatcc tttggcttat tttgcaaaag cttatgaaaa taaattaaaa aaagcacatt
    13321 taacgagata aagggttgtt aatggaaaat gtttttaatg cgcaaaatat tgaattttta
    13381 atgcaaggtt tatttctgac attaaaaata gccttggcaa cttgtattat ttcgattgtt
    13441 tttggaactt ttttagctat aactaaaaat tatggagata gattaagtaa atttttagca
    13501 gcttgctata tagatatttt tagaaatact cctttattgc tatggatgct cgcagcttgt
    13561 tttgttttgc ctgtattttt tggacaattt cctcaagctt tttggggtac tataggattt
    13621 tcactttata cgagttcggt tatggctgaa attattagag gcggattaaa ttctatacca
    13681 aaaggtcagt ttgaagcagc ttattcacaa ggttttggta aattttttac tcttttttat
    13741 attattttac cacaaacttt tagaaaaata atacctgctt tattatctca aattgtaacc
    13801 actgtaaagg atacagctta tttagcaggt ctgggtatag ctgaacttac ttataattca
    13861 aaaactatat tggcaaaact aacaagtttt gaagaaattt tagcgatgat aggtgttgtt
    13921 gcgggaattt attttataat atgtttttca ctttctatgt tggtaagata ttatgccaaa
    13981 aagacagctt atatttctta aaaaagctta tatttttata taagcttttt aaatttacag
    14041 cagtttttaa catttttttt attaaaatct tttgtattaa ttcataattt tattgattaa
    14101 ggttttttat gcgaggttat aaaatttttt caggctcagc taatgtcgaa tttgcaagac
    14161 aagtttctaa atatctctcc ctgcctttaa gtgatgctgg agtaaagcgg tttagtgatg
    14221 gagagattag cgttcaaatt gatgagagtg tacgcggaaa ggatgttttt attattcaaa
    14281 gtacttgcgc tcctacaaac gataatttaa tggaactttt aattcttaca gatgctttgc
    14341 gtcgctcaag tgcaaattca attacggcta ttatcccata ttttggctat gcgagacaag
    14401 atagaaaagc aaatcctaga gtgccaatta ctgctaaact tgtggctaat ttgattcaag
    14461 cagctgggat tgatcgcgta gctacgatag atttgcatgc aggacaaatt cagggttttt
    14521 ttgatattcc agtagataat ctttatggaa gtatagtttt taatgattac attaaagcca
    14581 aacattttaa aaatgctatt ataggaagtc cagatatagg gggtgttgca agagctagga
    14641 gtgttgcaaa gcatttagga cttgatatag ttatagttga taagcgtcgt gaaaaagcca
    14701 atgaaagtga agtaatgaat attattggag atgtaaaaga taaagaagtt atcttagtgg
    14761 atgatattat tgatactgct ggcactatag ttaaagccgc ggaagcttta aaagaaaaag
    14821 gtgcaaaatc tgttatggct tgctgtactc atgcagtttt aagtggaaaa gcctatgaga
    14881 gaatagcaag cggagtttta gatgagcttg tggtaacaga tactatacct ttaaaagagc
    14941 aattaccaaa tattaaagta ttaagcgtta cacctgtttt tgctgaagta atacgtcgtg
    15001 tttatcataa cgaaagtgta aattctctct ttatttagat taaaaaagct taaagattat
    15061 ttttaagctt ttcattttta tgctacttaa agaaacaaaa aacatatatt tttttaaaaa
    15121 tgtgaaaaaa ctaaacatct ttctatacaa tttaatctat aaatctgcta ttctttgaaa
    15181 atattttatt ttcttaggag aaatatgact cagttaagta ctaaaatttt atggttgttt
    15241 gttgcagctt taggcgctat ttgttttggt tatttagctt tacaaaatgg cgaaagtgta
    15301 tcagcgattt atttggtggt tgctgctgta tgtatttata tgataggata tagattttat
    15361 gggagttttg tagcttataa ggttttagaa cttgataaaa atcgtgcaac accagcactt
    15421 gtagaaaatg atgggcgtga ttttgtgcct acaaataaag ctgtattatt tggacatcat
    15481 tttgctgcta ttgcaggagc aggtccatta gtaggaccta tcttggccgc tcaaatggga
    15541 tatttgcctt ctatgctttg gattttagta ggaggagttt tagcgggtgc tgtgcatgat
    15601 tttgttgttc tttttatatc tactcgtaga aaaggtagaa gtcttggcga gatgattaag
    15661 gatgagatgg gtaaatttac aggtggagtt gctatggtgg cgatttttgg cattatgctt
    15721 attattattg ccattttagc tatggtggtt gtaaaagctt tagcagaatc tccatggggt
    15781 ttatttacta tcgcaatgac gattcctata gcaatattta tgggaattta tatgcgtttt
    15841 atccgtccag gtagagtagg ggaggcttct ataataggtt ttgtgctttt aattttggct
    15901 attcattatg gtagcgttat agctgctgat ccttattggg ctaaaatatt tactttagaa
    15961 gctccaactt tggcaattgt tatgatggct tatggtttta ttgcttctgt tttacctgtg
    16021 tggtttttac ttgctccaag agattatctt tcaacttttt tgaaaatcgg tgttattgtg
    16081 gtaatggctg tagctattgt tttggttgct cctgatttac aaatgccaaa agcaaatact
    16141 cagtattttg atggaacagg tccagtattt gcaggtggag tgtttccatt tttatttatt
    16201 accattgctt gtggtgcgat cagtggtttt catgctttga tttctagtgg aactactcct
    16261 aaaatgcttg aaaacgaaac tcatactttg gctgttggat atggctctat gcttgctgag
    16321 agtgctgtgg cgattatggc tttaatttgt gcttgtattt tacatccagg tctttatttt
    16381 gctataaatt caagctctgc tttgatagga acagatgttg taaatgtagc acaaactatt
    16441 tcaagttggg gatttagtat tactcctgaa gaaattacta ctttaaccac aaatatagga
    16501 gagtatacta tactttcaag aacaggggga gccccgactt ttgctatagg tgtagctttg
    16561 atcttgcatg aactttttgg cggcgtggat ttgatggctt tttggtatca ttttgctata
    16621 ttgtttgaag ctttatttat tttaacagcg gtggatgctg ggacaagggc ttgtcgtttt
    16681 atggtgcaag atatattggg taatgtttat aaacctttag gagatattca taattatcca
    16741 gctggacttt tggctacggc tttaagtgtt gcaggttggg gatattttct ttatcaaggc
    16801 gccattgatc ctaagggagg aatttataca ctttggcctc tttttggcgt gagcaatcaa
    16861 atgcttgcgg gtatggcttt gcttcttgct acaactatac ttgtaaaaat gggcaaggca
    16921 agatatactt gggttacttt agtacctgcg gtatttgtct tagtggcaac tctgtatgga
    16981 ggaattcaaa aaattatgcc ttatgaagaa ggcaataaaa tagcaaatgc ggtaagtcat
    17041 gtagccgccg ttagcataca aagtcaaaaa attaaagatt tagaatttaa attaaataat
    17101 actaaagatg aaaaagaaat ttctacaatt agaaaagaaa tttcaatagc cactcaaaat
    17161 aaagttggaa atttacttaa tgcaattctt tgtgtgttct ttatgatagc taccttgctt
    17221 gttataattt cttgtatagg aatttgctta ggtaaaatta aaattcctct taaagaaact
    17281 aagtatatta agattgatga atttcaaaaa atttaagtat tattatgaaa aagccgaaag
    17341 gttttttcat cccttggtgg gactttctag ttatgataag tatttagaac acatgaaaca
    17401 aaaacatcca ggaaaaattc caaaaaccag aggggaattt ttcaaagaat gtctagataa
    17461 aaaatataat agtggcggtt taaataaatg ctgataagct taaaggataa agttttatca
    17521 tacaaaataa gctttaagca tttaaaaagc catgaattct tttaagttct tcactaatag
    17581 gatttttctt tccatctctt gtaacactta cataaattac taaagccgaa gttacattaa
    17641 tgcaagaagt acaaccttga gaatccactc tttgagctgt gacttctact tcaacgctga
    17701 ttgaagtgtt gcccacattt acaactttag agtaacaaga aattatatcg cctataaaaa
    17761 caggttcttt aaaaactact ttatccatag agatggttac aacgcgttca ggagaaagtt
    17821 ctcttgctgc gatagctcct gctaaatcga tttgtgaaag tatccatccg ccaaaaatat
    17881 ttcctgctgg atttgtgtca cttggcatag ctacaatttt taattttggt tctcccatat
    17941 ctctcatttt tactccttat tttaaaaaat gaattataat taaaaaagtt aaaaaggaga
    18001 ataaaagtat gaataatttt aaagaaatag ctaaattggt tagaaaatac aaagaaagaa
    18061 ataatgcgtt atatgagttt ttagacaaag aagatgtggg cgagtatttt agatctttga
    18121 tttctttaag tgagttaaaa caagataaaa caactatgct agccatactt aggcgtttga
    18181 ttgatttaaa agaagaaaat ttagttcaag agtggaaaaa aaacaacttt aaggaagata
    18241 agattataga gttaaaacat aagttctatg aagaggttag aaagttttat gaaaaagaac
    18301 atcaaaattt aattaatgaa ataaaagaga aaaaactttt aaataatttt tatcagtcct
    18361 taatacaagg agtgcataat ataggtttaa ttatgaatat ttttgaaatt tcttggacta
    18421 aagaaattat agaaaaaaat aataaaattt tatctactca atttccaaat ttagatgatg
    18481 caatggaatt tttacgtaaa aatcatttat atcaaaaaac tccagaagga gaaatttgtg
    18541 agcgaagcta tggtgtttta gttagaatag gaaatttatg gaaatttgtt ccttatgcga
    18601 gatttttcga gaatgaaatt ttaaaattag aatttgcttt tgaaaatatg attgatcagc
    18661 ttaaaatatt tgctagcagc gaagaggaaa aagcttatat agaatatttt gaaaaattaa
    18721 aattagcgtt ttgtgaaaaa gatgaagata gggttataaa agcttggcaa gaagctgaat
    18781 ttgcttggat gaaagtaaaa tcacctttac aagtgggaca tcctttagaa tattatgaag
    18841 ataattatac tcatgcggtg gcattagaat gggatataag aatagaagat gaaaatgatt
    18901 ttgatgtttt gaaatttggt aatgaaatta aggaaagttt tgaacatgtt tataaaaata
    18961 taggacttga agattgtgaa ttagaaaaag aagttttatc taatatagaa aaaactcaac
    19021 tttatatttg cactccgatg atattttatg gtgctgaact taaaggttta tcctcagctc
    19081 aagtcgttcc aaatgatgag tttgtaagtt ctaaggcggg caaaaaaata tttgccttta
    19141 taaattttgt atatgaaaat gctaaaacaa agccttttat gaaaatttct agcgaggttt
    19201 ttgataaaga atttttggat tttggaagaa atattttatt ttatcaggaa aaaatttgga
    19261 aaagggttta tgaagtatca actataggcc atgaatttgg tcatatattt tttattgcta
    19321 atgataccga aaaaacaatg aatcagagtg gtttttttaa aaatatagaa gaatataaag
    19381 ctactacagg tggacttata aatttctttt atcatgaaca agatgacttg ataatgcctg
    19441 tttttcatga acttataaaa agagctattg gacttatttc ttggcaaagg gttgatgaag
    19501 ttagacctta ttatacggaa ggacttattc atcttagctt gctttttgaa agcgaagtat
    19561 tgatttttga aaataataat ttgaagataa attttgattt agggtattat gaaaaattta
    19621 aagagctaac tttaaaaaat tatcatgaat tggcaaaaca ctatgcttta agacttgatg
    19681 caaaagagtt tttaagtaga ttttgtgaaa ttgaagataa tatttttctt cctattatgc
    19741 ctaagtgtaa agaatttgtt aaattttatt atgatttata cgagaaaatt ggtaatgaaa
    19801 ttgataatag tggagaattt gaaagatata agaaaaaata ataaagtttt ttgaaaaaaa
    19861 cttaaaaaaa gctgtttttt acttgatatt gttttttaaa tatgctaaaa ttaggcgttt
    19921 caattaaaac aaaggagctt ttatgactaa agcagatttc atttcattag ttgctcaaac
    19981 agctgggcta acaaaaaaag acgctactac tgctactgat gcagttattt ctactattac
    20041 tgatgtttta gctaaaggtg atagcatcag ttttattggt tttggtactt tttcaactca
    20101 agaaagagct gctagagaag ctagagtacc aagcacagga aaaacaatca aagttcctgc
    20161 tacaagagtt gcaaaattta aggtaggtaa aaaccttaaa gaagctgttg caaaagcaag
    20221 cggcaaaaag aaaaaataaa acttcggcta gataaattct agccttcttt cttaattaat
    20281 tcagatattt tgtatctttt atttacttta tttttttaaa cttttataaa actatcatta
    20341 ttaaacaaaa aaggatatta aaattatgaa agtacatgaa aaagtaagtg agcttatagg
    20401 aaatactcct attatacatt tgaaaaaatt tggtatcaat gtttttgcta aatgtgaatt
    20461 tttaaatcct agtcattcta taaaagatag agcagctttt gaaatgatta aagatgcttt
    20521 agatagtaaa aaaattaatc aagatactac aatagttgaa gcaactagtg gaaatactgg
    20581 aatttctttg gctatgattt gtgcagattt gggacttaaa tttattgctg taatgcccga
    20641 atctatgagt ttagaaagaa gaaaaatgat aacactcttt ggcgctaggt tagaattaac
    20701 tcctgcaaat ttaggaatga aaggagcggt tgataaagca aatgaaatat tattaaatac
    20761 tccaaattct tttatggttt ctcaatttga aaatatttca aataaaaatg cgcatcgtaa
    20821 gaatacggct ttagaaattt taagagattt ggataatgaa cttgatattt ttgtagctgg
    20881 ttttggaact ggcggtacta ttagtggagt tggggaaata ctaaaagaaa aattagaaaa
    20941 agtgcatatt gttggagtcg agcctctaaa ttctccattg cttagcaaag gtgaagcggg
    21001 aagccataaa atacaaggaa taggggcgaa ttttatacct gctattttaa ataaagaagt
    21061 tatagatgaa gtgatcacag taagtaatga agatgctata aatacagcca aagaacttgc
    21121 caaaagtggt ttaatggtag gtatatcaag tggagcaaat gtatttgccg caagtatgct
    21181 agcaaagaaa tttccagata aaagaatttt aactatgcta aacgatacgg ctgaaagata
    21241 cctctcaacc gatctttttg cttaagtata attattgaga atttagaaaa attctaagtt
    21301 ctcttaaaat ttcttgtgga tttaaatcgt taatttcttt ataaaaatga cctttttcat
    21361 caataagata aagcatattg ctatgtgcta tagaataacc cataaaagaa tcatttagat
    21421 ctattttttg atattgaaca ttatattgtt ttgttatttt ttgaagagtt ttttcatctt
    21481 ttgcaattaa ggcatctgct tttgggtaaa agtatcgtaa ccattcgttt gtattgctta
    21541 agttattatc tctatttgga tctaaagaaa taaaaagaag gtgagcctta ggattattga
    21601 tttgctttaa ggctttgcct actaaactaa gagttgccgg acaaacatca gggcaataag
    21661 tatatccaaa atagataata agcttatctc ctttaaaatc ttttagggtg gtttcctctt
    21721 ttaagtctga ttttaagata aaatcataag aattttgatg atttttaata aaaaatatta
    21781 cacctaaaat aatggcaact ataactataa acaaaataat attttttttc atttttttag
    21841 ctcaaaatca aaataaaacc ctatgggttt attattatcc ataaattcta ccctgaaacg
    21901 catagtatct aaaacgcaag cagcaagaac tattttactt tcatagtctg ttgaatttaa
    21961 tcgatgtatt ttaggtttaa tttcgcccat atacatattt aatccataaa ttttaattcc
    22021 taagttgtta taatttccta gatttacaat ctttagattt gtaacatcta aagattgtaa
    22081 gggtttggga tttagggaaa ttaagacttt tttattgtta aaactatatg tgcagtcttt
    22141 aacattaaga tcgcaagtca atggggtaga aaaatcagtt tttgttattt tttgagaatc
    22201 ttttattaca taaaaatcaa aaataatata taaaatagca ataacaaaag caaaagcta
//
LOCUS       DAPIWJ010000019        22250 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.019, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000019 DAPIWJ010000000
VERSION     DAPIWJ010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22250)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22250)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22250
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.019"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..279
                     /locus_tag="RJ259_000552"
     CDS             <1..279
                     /locus_tag="RJ259_000552"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366290.1"
                     /translation="LDLKIQNLILEKNKQNISLQGNLNINNSYQAKLQVISLDEPDEI
                     FPWTKDYGGLNQYFLKENNNFFLNLSYDSLANPQLKINGSEFSNMDLN"
     gene            279..1460
                     /locus_tag="RJ259_000553"
     CDS             279..1460
                     /locus_tag="RJ259_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7366291.1"
                     /translation="MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAG
                     SGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKILDNYKNSLYKPLIFIDEIHRLSKT
                     QQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGAKELETLLLRVQE
                     KMKFSIDKEAKNFLLKSADARAMLNLLEFVLVLDEKHISLENLKKLRNTISSEGASSK
                     DTHYILASAMIKSLRGSDVDAAIYYLARLIDAGESADFIARRLVIFSSEDVGNADPNA
                     LNLAVSTLEAVKNIGYPEARIILAQCVVYLASTIKSNASYKAINEALNYVKNNEALEI
                     PNYLNNNHQEKQNYLYPHDFGGWVEQKYLSKNLKFYHSKGLGEEAKLLDNLYKLKNHK
                     A"
     gene            1523..2251
                     /locus_tag="RJ259_000554"
     CDS             1523..2251
                     /locus_tag="RJ259_000554"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HDV7366292.1"
                     /translation="MIKIGIYGAKGRMGKQIEECLKSETQAQISILYDKGGNLEELFE
                     KSDVIIDFSSPSGTHELLNYARTMPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNM
                     SLGVAVLNYLASKASQMLKNFDIEILEMHHRHKKDAPSGTAMTLAQSVAKARNLELEK
                     VRVSGRDGIIGERSKDEIAVMSLRGGDIVGRHTVGFYEDGEFLELNHTATSRATFAKG
                     AIKIAIWLSKQEAKMYSINDFLGI"
     gene            2253..3590
                     /locus_tag="RJ259_000555"
     CDS             2253..3590
                     /locus_tag="RJ259_000555"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDV7366293.1"
                     /translation="MCAVVGVINSKNASTYAYYALFAMQHRGQEASGISVSNGKNIKT
                     IKAKGEVSQIFNPDNLKTLEGEIAIGHNRYSTAGNSSLNDAQPIAATSVLGDIALAHN
                     GNLVNKEEVRSRLIQDGAIFQTNMDTENVVHLIARSKQESLKDRFIESLKECIGAYCF
                     VLASKDKLYVVRDPHGVRPLSLGRLKDGGYIVASETCAFDLIEAEFIRDVKPGEMLIF
                     TQGNDKFESIELFSQTPRICAFEYIYFARPDSIVEGKSVYEVRKKMGEALAKKFAYKA
                     DFVVPVPDSGVSAAIGFAQYLQIPLEMAIVRNHYVGRTFIEPTQELRNLKVKLKLNPM
                     RKVLEGKEIVVIDDSLVRGTTSKKIISLLRAAGASKIHLAIACPEIKFPDTYGIDTPT
                     FEELISANKNTEEVREYVEADTLSFLSIEELTQSIGDERKYSLISFDGDYFIK"
     gene            complement(3593..4978)
                     /gene="fliI"
                     /locus_tag="RJ259_000556"
     CDS             complement(3593..4978)
                     /gene="fliI"
                     /locus_tag="RJ259_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HDV7366294.1"
                     /translation="MNLEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVK
                     LVSNENENLNTLAMVVEIKEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGR
                     VVDPFMRPKDGKGAIEATKYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQK
                     LGIFAGSGVGKSTLMGMIVKNSKAPIKVVALIGERGREIPEFIQKNLGGKLDDTVIIV
                     ATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTT
                     KGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVL
                     SRELTDFGIYPPINIQNSASRVMSDIISPEHKLWARKFKRLNSLLKENEVLLRIGAYQ
                     KGSDKELDEAISKKEFMQKFLGQNPEESFEFNQTLELLSQIDTPNTPLPPTQNINVGS
                     ASATLPNPNLK"
     gene            complement(4978..5550)
                     /gene="folE"
                     /locus_tag="RJ259_000557"
     CDS             complement(4978..5550)
                     /gene="folE"
                     /locus_tag="RJ259_000557"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HDV7366295.1"
                     /translation="MQKKFEDCVKTMLEIIGENPNREGLIKTPNRVFKAYEFLTSGYT
                     QNVKEILNDALFESSNNEMVLVRDIEFYSLCEHHLLPFFGRAHVAYIPNKKVVGLSKI
                     PRLVEVFARRLQIQEQLTEQIAQALMENVDAKGVGVVIEARHMCVEMRGVQKANSTTT
                     TSALRGIFLKNEKTREEFFSLINSAKQVRF"
     gene            5693..7027
                     /locus_tag="RJ259_000558"
     CDS             5693..7027
                     /locus_tag="RJ259_000558"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HDV7366296.1"
                     /translation="MEVKAKQLDSVNATASVKIPSGMIKSEVENLAKKASKSVKMDGF
                     RPGKVPVSAVLKRYERELTQDAEQNLFKSAVNSALQELKKENKELVGEPYFEKFDRKD
                     GEIIAELILSFKPEIKLEGYEKLIPEYQTPKVSKKEIDEKKDELLKRFATPEAIKTKR
                     ALKEGDFAKFDFEGFVDDKAFEGGKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIK
                     VTFPKEYGAAHLAGKDAVFKVKLHEIQELKIPELDDEMLKKLLPGEEKASVEVLDEKL
                     KEQIKNEKLFKLVNDELKGKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEI
                     EELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRY
                     GMNPKEHLENYKKQGALPAVKMALIEEKLFNDIFIPKTEKSEKVSKKEKEDK"
     gene            7027..7611
                     /gene="clpP"
                     /locus_tag="RJ259_000559"
     CDS             7027..7611
                     /gene="clpP"
                     /locus_tag="RJ259_000559"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HDV7366297.1"
                     /translation="MFIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQK
                     VAKIAKDTERDFFMSAQEAKEYGLIDKVLEKSFK"
     gene            7647..8174
                     /locus_tag="RJ259_000560"
     CDS             7647..8174
                     /locus_tag="RJ259_000560"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HDV7366298.1"
                     /translation="MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGV
                     GLAAIQVDIPLRVLLVNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDF
                     FEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQKF
                     DKEFKKKKKNHKKEK"
     gene            8171..9676
                     /locus_tag="RJ259_000561"
     CDS             8171..9676
                     /locus_tag="RJ259_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HDV7366299.1"
                     /translation="MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVE
                     RIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDLAIALLILLQNEELDDFFVVGEL
                     GLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
                     FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALG
                     MHNILFEGSPGSGKSMCAKRLVYIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHP
                     HHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIESLREPLEDHKIHIS
                     RVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLY
                     VAMDEISKDDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAK
                     DTLDLAISRYNLSLRSLNKILKVSRSIADLEQSLNISKTHILEALSFRARN"
     gene            9678..10376
                     /locus_tag="RJ259_000562"
     CDS             9678..10376
                     /locus_tag="RJ259_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HDV7366300.1"
                     /translation="MENKSIAIFIDAENIPAKYAKSIFDIASDYGEVIIKRIYGDWTQ
                     KNIQGWREQIAEYSLIAMQQFNFAANKNSSDMYLITEIMSIFYEKNIDIFVIVSSDSD
                     YTSLIQKLRENKKQVIGMGLEKSIKSYVNAFSEFFYLDKDESKKEDILSKDYLRALIN
                     ITEQLIDEKGRAEYAQIRTNMNRKYSDFHPQNYGFKNFRALIQKFLPKMKKFEEEREK
                     NIYFLVKKDYESYY"
     gene            10360..11730
                     /locus_tag="RJ259_000563"
     CDS             10360..11730
                     /locus_tag="RJ259_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HDV7366301.1"
                     /translation="MKAIIDNIKILEQNAINKGLDELILMENAGLNLAKLIKKEAKKI
                     RIQRKIRKVKILFLLGGGNNASDGLVALRNLKHAKAYKIGFKENTLFKKQEQILQNYA
                     FKFCKKEPNFKKFHIIIDCILGTGSNRCLDEKTSLIIQKVNQSKALKIACDIPTNLGF
                     YPCFKADITFCMGALKEILLEDFAKEFVGRIKIANLGIRSKKFYPNSQAFLLEKKDLK
                     TIDRKINANKGNFGHIYIVANASAGTLAGLGALNFGAGLVSLVAQKSFSPLLMLKEKI
                     ENNASAIALGMGLENLDFLKDEILQNTPLILDANCFLSEALLWYLNRKDVVITPHPKE
                     FIKLYKMCFDENLDIETLQKNRFFYARKFSQNYDCVLVLKGANPIIVQKEKLFVVNLG
                     NQALAKGGSGDVLSGMIAAHLGFGFSALEAAKNATLAHGLVAKKYKFNKNSFDALKLI
                     KGLKCL"
     gene            11721..12287
                     /gene="purN"
                     /locus_tag="RJ259_000564"
     CDS             11721..12287
                     /gene="purN"
                     /locus_tag="RJ259_000564"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HDV7366302.1"
                     /translation="MLVKLAVLFSGNGSNLENILEKLHKKTIGENTYEVVLCICNKKD
                     AFGVQRAKKFGLDTVIVDHKAYNTREEFDTILVQKIKESGANLTVLAGFMRILSPVFT
                     KNIKAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVSEELDGGMIIAQKAFEKR
                     NLSFEEFEEKIHSLEHEILPLSVIEIFS"
     gene            12359..13078
                     /locus_tag="RJ259_000565"
     CDS             12359..13078
                     /locus_tag="RJ259_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HDV7366303.1"
                     /translation="MFEWIFSIDAWITLATLSALEIVLGIDNIIFLAILVSKLPPEHR
                     DKGRILGLAFAMITRILLLLSLFWVMKLVTPLFSVLGNEISGRDLVLLLGGLFLIVKS
                     IKEIKEQISHQEESQSHFKASNKLWIVVAEIAVIDIVFSLDSVITAVGIAQDVTIMII
                     AVIIAVAVMLFASKPIADFVEKYPSIKILALAFLVLIGVVLVAESFDIHIDKAYIYTA
                     MAFALVVQILNILDQRKEKNG"
     gene            13071..13280
                     /locus_tag="RJ259_000566"
     CDS             13071..13280
                     /locus_tag="RJ259_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HDV7366304.1"
                     /translation="MAKDANGIELNTGDSVSVIKDLKVKGASTTLKRGTTIKNIKLTS
                     KEGEIEARVDKFGVIVLKTEFLKKI"
     gene            13290..14474
                     /locus_tag="RJ259_000567"
     CDS             13290..14474
                     /locus_tag="RJ259_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HDV7366305.1"
                     /translation="MRILLVLRGNYYAGQEEFIKNNKLQNYTLDLNALRLLSGSVKNI
                     VSEYKILNVKNDEDLSKILLKLLEMRMQKGEFSIINAYNETLKIYKDLAKQYRYKIYV
                     IVFDSSLKQCQEKNLLEAKKNGYIIPYALLEKTQDLLKKNPKKYPILDSRDWKKCLYQ
                     MPNLSKYKKIHHIGDLQGCYSVLKEYIKTIKEDEFYIFLGDYINRGIENGKVIKFLLK
                     ICEKENVCLLEGNHERHLIKWANGELSNSKEFNENTLKDFRKEKLTPRDARKLYPHLK
                     ECLYYKFQNKFIFCSHGGVNFIPSKPEKISFIPSHDFIYGVGGYEDSQKVANQFCNFT
                     SDNLYQIFGHRNKEKLPMKIAKRVFLCEGKIDDGGYLRVVTLDEKGFECIEIKNQIYK
                     KK"
     gene            complement(14487..15845)
                     /locus_tag="RJ259_000568"
     CDS             complement(14487..15845)
                     /locus_tag="RJ259_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HDV7366306.1"
                     /translation="MDPSQVLDLNQTSTASFDAGYSILMVVVALALVFLNGFFVLSEF
                     SIVKVRRSKLEEMVKEKKAGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAIA
                     KMLEIPLINLGFSTVIIHTMAFIIAFSIITLLHVVLGELVPKSIAIAVADKAVLFIAR
                     PLHWFWMLFLPCIKIFDFLAAISLKLFGIKPAKESELTHSEEEIKIIASESQKGGVLD
                     EFETEIIRNAVDFSDTVAKEIMTPRKDMICLNKQKSYEENMQIICEHKHTRFPYIDGS
                     KDTILGMIHIRDIIQNELNHKSQNLDTFVKPLILVPENISISKVLVMMNKERSHTALV
                     VDEYGGTAGILTMEDIMEEIIGEIKSEHEEDSYKKLAENIYEFQGRCDIETVEEMLVI
                     NYDEDLEQVTIGGYVFNLLGRLPMVGDRIEDELCYYEVKKMDGNSIERVKVVKKTNKD
                     EE"
     gene            complement(15944..17149)
                     /locus_tag="RJ259_000569"
     CDS             complement(15944..17149)
                     /locus_tag="RJ259_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HDV7366307.1"
                     /translation="MIMFSSFFKSKKWALWAYLGLFLLLFFLFIQTSLNVAINSWYSD
                     FYNVLQKPKIELLDSNSTQKIEENLENNATLIQEANQRAEQNFQKANFINKGALYYYQ
                     NLLEYFFNSRAMIEKPNYSANDFYALILVFLAIAIPYVLIATINIYFASVYAFKWREA
                     MTFSYLKFWKNKDDNIEGSSQRIQEDTYNFSKIVESLGLSFIKALMTLVAFIPILWSL
                     SDVVSKALFANLSENSFFYFLKNIDGLLVYIALLISLGGLVVSWFVGIKLPGLEYNNQ
                     KAEAAFRKELVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMI
                     VIVPFLIMAPGLFAGAIGLGIVMQINNAFDQVRSSFSIFITNWTTITQLRSIYKRLKE
                     FEKNISYKS"
     gene            complement(17195..17941)
                     /locus_tag="RJ259_000570"
     CDS             complement(17195..17941)
                     /locus_tag="RJ259_000570"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDV7366308.1"
                     /translation="MKSSVIFGFVLSLILHTLVLMFSLFSFYTQEKSSGVDFKQGAEF
                     TSIMMVSELPIGELKEVSIDQKKSNSQDKNKKQDERISLNSQDKNAVLKVQKKIEKQD
                     ENQAQKEIANASENSKFKNESLSAPLQSNKDKTQTIVSGNAKEQVKSYQALLMAHLTK
                     FKKYPQEAIIQKQEGVVRIRVSIDESGNVLSKELKKSCPYAALNDEALSLFKRASPLP
                     KPPKEMLKNGDKISFVMPIDYNIKDYLGKK"
     gene            complement(17943..18353)
                     /locus_tag="RJ259_000571"
     CDS             complement(17943..18353)
                     /locus_tag="RJ259_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HDV7366309.1"
                     /translation="MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIK
                     IELPKSSQQAEDKLKNPIILYLNTDNTLAINDDKLSLENLSSALDIKTKGNKEEIIYF
                     HIDKSVKYEDIMQVMQKLKENGYGKIALSSKKMD"
     gene            complement(18340..19101)
                     /locus_tag="RJ259_000572"
     CDS             complement(18340..19101)
                     /locus_tag="RJ259_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HDV7366310.1"
                     /translation="MLKKCFYFVFLLLNLNAEANATDTNLSFDSSKIETEAPKIELSL
                     SSLYQNADEVVKGVIYILVLFSILAWAVFISKLMQFYFMKKNLDLSIQKIKELKNLNE
                     LDQTKDFAGVLSLEIQDELEKSEYKNDHIKERIELRLQNTISKQITASKNGLSLLASI
                     GASAPFIGLFGTVWGIMNAFIGIANLGNASLAVVAPGIAEALFATAFGLIAAIPAVLF
                     YNYLTRKNLKLMHHLDELANFVYILFHRSYFNDKN"
     gene            complement(19113..21380)
                     /locus_tag="RJ259_000573"
     CDS             complement(19113..21380)
                     /locus_tag="RJ259_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDV7366311.1"
                     /translation="MKKLSLFCAVGLCFASFAFSEELEFDSLEISGSKIKNDEKPFVT
                     PGATSTREGIGSDTQSIDSIVRSIPGTYTNTDQAQGTVQVNIRGMSGFGRVNTMIDGV
                     TQTFYGSASDDPARFHSQTGTSAFGAVIDTNFLIGVDVTRGTFEGVGGANALMGSANF
                     KTIGINDIVHDGNIFGFLGRFSYGSNGIGPSYMSAVAGKTELENNGYVGALFGYSAKR
                     ITQNYTVGGGGKIGSSMVDTDGDGIADTNIAPFDPDFLTQKPNSQLFKLEYVPNSFTN
                     TIFSYRRYQNELAGRKIHNDNYQLDFWHNPNEWLNVNTLIAYNQGIQTYGSKSTFAAN
                     DAIANTKAKNTATTFDISDTLEGEWHRFNLNIRFGANILLNDYKNTLNTSIQGVNSIP
                     FQPRGKQNLFTYYLDNSLNYGIFTLDTNVNLLDWNIKGHRPACDEVNFMCFPKAATDI
                     DKNGLRLNASVMLSAAIHELFTPFVSFARTNRAPNVQEMFFSNNEGNGINSFLKPEQA
                     NTWQIGFNSFKHGLLKDDDRFGFKAVYYHTKIKDYIYNEQFYLEDPSKDPPSSQFYMH
                     LNSADDTIFKGVELELSYDLGFAYAKAMYSRQDTSSTISQTSGPLLGSFSASKIMELP
                     KDYANVELGFRLNDKISFGGIAKYTGKAKRVNPNTDDWNKDPNNPYYPKPTTQDLPKI
                     PIIVDLYWNIEWFKNLTMRAEVQNLFDKNYMDALNAYNSLDNQLQYNGAGDPIYLFSN
                     SARGRTFIVSFEYKY"
     gene            complement(21377..22228)
                     /locus_tag="RJ259_000574"
     CDS             complement(21377..22228)
                     /locus_tag="RJ259_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HDV7366312.1"
                     /translation="MKFYTILSILFISFMLSACAVLQKSSPLQENKDFYILDTHTQKK
                     ISFEDMILELLKADVILLGEKHDEVKHKISQVMIFNALEGNLSSQNINFDVALEMLAS
                     TEQNHLDKAFKNKKTIKANELTNALNWDKVWKWKDYEQFVNVVFYSKSKILGANLSRS
                     EITSIYNGAQPLKGYVSTTNEVKKQLFDIISLSHKLNPEENKELLDKLVEIQQFKDRR
                     MADVLVHHVNKVLLLAGSYHTSKKIGIPLHIQDFKSSKKIVVVNLSYGEIDLKDSDYV
                     LIYKGEE"
BASE COUNT         7934 a         3320 c         3551 g         7445 t
ORIGIN      
        1 cttgatctaa aaatacaaaa tttaattctt gaaaaaaata aacaaaacat cagtctacaa
       61 ggcaatttaa atatcaacaa ctcttatcaa gcaaaattac aagttatcag tttagatgag
      121 cctgatgaaa tttttccttg gacaaaggat tatggaggtt taaatcaata ttttttaaaa
      181 gaaaataata acttttttct aaatttatct tatgatagct tagccaatcc tcagctaaaa
      241 attaatggta gtgaattttc aaatatggat ttaaattaat gagcctagct ttgacctttc
      301 gccctgaaaa ttttgatgat attttaggac aatatgagct tatagaaatt ttcaaaaaat
      361 ttactgcttt acaaaaactt cctcatagca ttttttttgg aacagcaggt tctggaaaaa
      421 caacttttgc tagagttgta gccaaagaat ttggcttaga tttttatgaa tttgatggag
      481 gaaattttaa actcgaagaa ctaagaaaaa ttttagataa ttacaaaaat agtctttata
      541 aacctttaat ttttattgat gaaattcacc gccttagcaa aacccaacaa gaaatgcttt
      601 taattcctat ggaaaattac cgtttaattt taatcggcgc aagcactgaa aatccctatt
      661 ttgttttaag ttctggtata agaagccgtt ccatgctttt tgaatttaaa tctttagggg
      721 caaaggaact tgaaacttta ctcttgcgtg tacaagaaaa aatgaaattt agtattgata
      781 aagaagctaa aaattttcta cttaaaagtg ctgatgcaag agctatgcta aatttgcttg
      841 aatttgtctt ggttttagat gaaaaacata tcagtcttga aaatcttaaa aaacttcgca
      901 acaccataag tagcgaaggt gctagctcaa aagatacaca ttatatttta gcaagtgcaa
      961 tgataaaaag tttacgtgga agtgacgttg atgcagctat ttattatctt gcaagactta
     1021 ttgatgcagg agaaagtgcg gattttatcg ctagacgttt ggtgattttt tcaagtgaag
     1081 atgttggaaa tgccgatcca aatgctctaa atttagcagt ttcgactcta gaagctgtta
     1141 aaaatatagg ttatcctgaa gcaagaatta tcctagccca atgcgtagtt tatttagcaa
     1201 gcacaatcaa atctaatgca agctacaaag ctatcaatga agctttaaac tatgtaaaaa
     1261 ataatgaagc tttagaaata cctaattatc ttaacaacaa tcatcaagaa aaacaaaact
     1321 atctttatcc gcatgatttt ggtggctggg tagagcaaaa atatcttagt aaaaatttaa
     1381 aattttatca tagcaagggc ttaggagaag aagcaaaatt gttagataat ttatataaat
     1441 taaaaaacca taaagcttaa ttttattatt taaaatttac aaaataaatg ctaaaatcaa
     1501 tattttattt tcaaggaaaa agatgattaa aataggaatt tatggcgcta aaggacgcat
     1561 gggaaaacag attgaagaat gtttaaaaag cgaaacacaa gcacaaattt cgatacttta
     1621 tgataagggt ggaaatttag aagagctttt tgaaaaaagt gatgtgatta ttgatttttc
     1681 ttccccaagt ggaactcatg agcttttaaa ttatgcaaga actatgccta aacctttggt
     1741 aataggtaca acaggacttg atgagaaaat tttacatttg atgcaaagtg ctagtgaagt
     1801 gatgccgatt ttttatgcga ccaatatgtc tttaggtgtt gcagttttaa actatcttgc
     1861 tagcaaagca agtcaaatgt taaaaaattt tgatatagaa attttagaaa tgcatcatcg
     1921 ccataaaaaa gatgcaccaa gtggtacggc tatgacttta gcccaaagtg tagcaaaagc
     1981 tagaaattta gaacttgaaa aagtaagagt aagtggaaga gatggcatca taggtgaaag
     2041 aagcaaagat gagattgctg tgatgagttt aaggggtggc gatatagtag gacgccatac
     2101 agtaggtttt tatgaagatg gtgagttttt agaacttaat cataccgcta cttcaagggc
     2161 aacttttgct aaaggtgcga ttaaaatcgc tatttggctt agtaagcaag aagcaaaaat
     2221 gtattcaatt aatgattttt taggaattta aaatgtgtgc agttgtagga gttatcaatt
     2281 caaaaaatgc tagcacttat gcgtattatg cgctttttgc tatgcaacac cgtgggcaag
     2341 aagcaagtgg tatcagtgta agcaatggta aaaatattaa gactattaaa gccaaaggtg
     2401 aagtgagtca aatttttaat cctgataatc taaaaacttt agagggtgaa atcgctatag
     2461 ggcataatcg ctattctaca gcaggaaatt caagtttaaa tgacgctcag cccatagcag
     2521 ctacttcagt tttaggtgat attgctttag cgcataatgg aaatttagtc aataaagaag
     2581 aggtaagatc aagacttatt caagatgggg ctatttttca aaccaatatg gacacagaaa
     2641 atgttgtcca tcttatcgca agaagtaagc aagaaagtct aaaagataga tttattgaga
     2701 gtttaaaaga atgtatagga gcttattgtt ttgttttagc aagcaaagat aaactttatg
     2761 ttgtaagaga tcctcatggg gtgcgtcctt tgtctttagg gcgtttaaaa gatggaggct
     2821 atatagttgc tagtgaaact tgtgcttttg atcttataga ggctgaattt attcgtgatg
     2881 ttaaaccagg agaaatgctt atttttactc agggaaatga taaatttgaa agcatagaac
     2941 ttttttctca aactcctaga atttgcgctt ttgaatacat ttattttgct agacctgata
     3001 gcatagtaga aggcaaaagc gtgtatgaag tgcgtaaaaa aatgggcgaa gctttagcta
     3061 aaaaatttgc ttataaagca gactttgtcg tgcctgtgcc agatagtgga gtaagtgcag
     3121 ctataggttt tgctcaatat ttacaaatcc ctcttgaaat ggcaatagta agaaatcatt
     3181 atgtaggaag aacttttata gagccaactc aagagcttag aaatttaaaa gtaaaattaa
     3241 agcttaatcc tatgcgtaaa gttttagaag gcaaagaaat agtagtcatt gatgatagct
     3301 tggtgcgtgg cactacttct aaaaaaataa tttctttact tcgtgctgca ggagcgagca
     3361 aaatccatct tgccatagct tgtcctgaaa tcaagtttcc tgatacttat ggcatagata
     3421 ctccaacttt tgaagaactt atcagtgcaa ataaaaatac tgaagaagtg cgtgaatatg
     3481 tagaagccga tacgctaagt tttttaagta tagaagaatt aactcaaagc ataggcgatg
     3541 aaagaaaata ttctttaatc agttttgatg gagattattt tattaaataa ttttatttta
     3601 aattaggatt aggcaaggtt gcacttgcac ttcctacatt tatattttga gttggtggca
     3661 aaggagtatt tggtgtatca atttgactta aaagctctaa agtttgatta aattcgaagc
     3721 tttcttcagg attttgtcct aagaattttt gcataaattc ttttttagaa atagcttcat
     3781 caagttcttt atcacttcct ttctgataag caccgatgcg aagcaatact tcattttctt
     3841 ttaaaagcga gtttaaacgc ttaaattttc ttgcccaaag tttatgttca ggacttataa
     3901 tgtcactcat cacccttgaa gcagagtttt gtatattaat aggaggataa attccaaagt
     3961 ctgttaattc acggcttaaa acaatgtgtc catctaagat agaacgactt tgatcggcga
     4021 ttggatcgct catatcatca ccatccacta aaacggtaaa aaaggctgtt atagtgcctt
     4081 taccttcttc tttaccggtt ctttccatga gttgaggcaa aagacttaaa acacttggtg
     4141 gataaccttt ggttgtagga ggctctccaa gagctagtcc aatttctctt tgtgccatag
     4201 caaaacgcgt tacactatcc atgataaaaa gtacatcttt gccctgttct ttaaagtatt
     4261 ctgccacact cattgcgcaa aaagcaccgt atttacgcat caaagcacta tcatcacttg
     4321 tagcaacaat aatcactgta tcatcgagct ttccgcctaa atttttttgt ataaattcag
     4381 gaatttcacg ccccctttct cctatgagtg ccactacttt tataggagct ttggaatttt
     4441 taactatcat tcccataaga gtggattttc ctaccccact tcctgcaaaa ataccaagtt
     4501 tttgtcctac accacaagtt aaaagcgcgt ctatggtttt aacacccacg ggaaaaactt
     4561 cttctataag ccctcttttc attgcatcaa taggtgcacg cattataggc atatatttgg
     4621 ttgcttctat agctccttta ccatcttttg gacgcataaa aggatctact accctgccta
     4681 aaagttcatc gctaacgcct atttgcatac ctgcatcact tataaaagca cgatcgccta
     4741 ttttaaaacc ttctataaaa gaaaatgggc ttaaatagct aaattgttct ttgatttcta
     4801 caaccatagc tagagtgttt aaattttcat tttcattaga aactaacttc actatatctc
     4861 caacccctgt tttaagccca cgaatttcta tacttgtagc agaaattttt gtaatctctc
     4921 caaaaatagc acttaaattt tctttgccaa gtttggagcg tagtttttca agattcatta
     4981 aaatcttacc tgtttagcag agtttatgag agaaaaaaat tcctctctgg ttttttcatt
     5041 ttttaagaaa attccacgta aagctgaagt tgtagtggtg gaattagctt tttgcactcc
     5101 acgcatttca acacacatat gtcttgcttc tatgactaca cccacacctt ttgcatcgac
     5161 attttccatt aaagcttgtg cgatttgttc agtaagttgt tcttgaattt gaagtcttct
     5221 tgcaaacact tctacaaggc gtggaatttt gcttaaacct actacttttt tattagggat
     5281 ataggctaca tgagcacgcc caaaaaaagg caaaagatga tgttcgcaaa gactgtaaaa
     5341 ttctatatca cgcactaaaa ccatttcatt attagaactt tcaaataaag cgtcatttaa
     5401 aatttctttg acattttgcg tataaccact agtaagaaat tcataagctt taaaaacacg
     5461 atttggcgtt ttaataagcc cttcacgatt tggattttct cctataattt caagcatggt
     5521 tttaacacaa tcttcaaatt ttttttgcac atttttctcc aaaaatattt tttatatttt
     5581 aataataatg taatattgca attttatcat aaattacttt aaaattttat gcaagtaata
     5641 aggaaaaatt tgctatcatt gaaggcaaat tttattttat aaggaaaaaa ctatggaagt
     5701 aaaggcaaag caactagatt ctgttaatgc gactgctagt gtaaaaattc cttcaggaat
     5761 gatcaaaagt gaagtagaaa atttagcaaa aaaagcttct aaaagtgtaa aaatggatgg
     5821 gtttagacca ggaaaagttc ctgtaagtgc cgtacttaaa agatatgaaa gagagctcac
     5881 tcaagatgca gaacaaaatc tttttaaatc cgctgtaaat agcgctttac aagaacttaa
     5941 aaaagaaaat aaagagcttg taggtgagcc atattttgaa aaatttgatc gtaaagatgg
     6001 agaaattatt gctgaattaa tactttcttt taaacctgaa atcaaacttg agggttatga
     6061 aaaactcatc cctgaatatc aaactccaaa agtaagtaaa aaagaaattg atgagaaaaa
     6121 agatgagctt ttaaagcgtt ttgctactcc tgaagctata aaaacaaaaa gagctttaaa
     6181 agaaggtgat tttgcaaaat ttgattttga aggttttgta gatgataaag cttttgaagg
     6241 tggtaaagct gaaaattatg ttttagaaat tggttctaag caatttattc caggttttga
     6301 agatggtatg gtgggaatga aaataggtga agaaaaagat atcaaagtaa ctttccctaa
     6361 agaatacggc gcagcgcatt tagcgggtaa agatgcagta tttaaagtaa aactacatga
     6421 aattcaagag cttaaaattc cagaacttga tgatgaaatg cttaaaaaac ttttaccagg
     6481 agaagaaaaa gctagtgttg aagttttaga tgaaaaatta aaagagcaaa tcaaaaatga
     6541 aaaacttttc aaacttgtaa atgatgaatt aaaaggcaaa tttgcagatg ctttgattga
     6601 aaaatataat tttgatttac ctaaaggcat agtagaacaa gaaactgata tgcagatgcg
     6661 tgcggctttt aatactttta gcgaaaaaga aattgaagag cttaaagcaa gtaaagaaaa
     6721 atatcaagaa aaacgtgatt cttttaaaga agaagcacaa aaaagtgtaa aacttacttt
     6781 tatcattgat gaacttgcaa aattgcgtaa gattgaagta aatgatcaag aattgattca
     6841 agcgatttat tttgaagcat atcgctatgg tatgaatcca aaagagcatt tagaaaacta
     6901 taaaaaacaa ggagctttgc ctgctgtgaa aatggcttta attgaagaaa aactttttaa
     6961 tgatattttt ataccaaaaa cagaaaaatc agaaaaagtg agcaaaaaag agaaagaaga
     7021 taaataatgt ttattcctta tgttattgaa aaatctagtc gtggtgaaag aagttatgac
     7081 atttattcac gccttttaaa agatagaatt attatgctaa gtggtgaaat tcatgatgaa
     7141 cttgccgctt ctatcgtagc acaacttctt tttttagaag ctgaagatcc tacaaaagat
     7201 atttatcttt atatcaattc tccaggtggt gtaattacaa gtggttttag tatttatgat
     7261 actatgaact atatcaaacc tgatgtttgt acgatttgta taggacaagc tgcttctatg
     7321 ggagcatttt tgcttagttg tggcgcagaa ggaaaacgtt ttgctttgcc taattcacgt
     7381 attatgattc atcaaccttt aggtggagct agaggtcaag ccacagatat tgaaattcaa
     7441 gccaaagaaa ttttaagact caaaactata cttaatgata ttttggcaaa aaatactaag
     7501 caaaaagttg caaaaatagc aaaagataca gaaagagatt ttttcatgtc agcacaagaa
     7561 gctaaagaat atgggctgat tgataaggtt ttggaaaaaa gttttaaatg atttctttgg
     7621 agatcattta aaacaaaggt tttttaatgg ttagaaaaat tatcacctat cccaatccta
     7681 gacttttttt aaactctgaa attgtaaata aatttgatac agaacttcac accttgcttg
     7741 atgatatgta tgaaactatg atagcaagta atggagtagg tttagcagct attcaagtgg
     7801 atattccttt gcgtgtttta cttgtaaata tttttgatga aaacgatgaa caaaaaaaag
     7861 aagatttgct agagattatc aatcctgaaa ttattccttt agatgaagaa atgattactt
     7921 gcacagaagg gtgtttgagt gtgccagatt tttttgaaga agtgaaacgc tataatcata
     7981 tcttgcttaa atatcaagat cgctttggag aatttaaaga acttgaagca aaaggttttt
     8041 tagctgtggc tattcaacac gaaaatgatc atttaaatgg acatttattt atagaaaaaa
     8101 tttcctttgc taagcgtcaa aaattcgata aagaatttaa gaaaaagaag aaaaatcata
     8161 aaaaagagaa atgaaaaaac taaagtgcat aagctttcat gaaggcttag acattataga
     8221 ggtagaatcc acttttacaa gaggtttgcc aaatttaagc atagtagggc ttgcaagtac
     8281 agcgattaag gaaagtgtcg aacgcatcaa agccacactt ttaagttgtg attttgcttt
     8341 tcctgctaaa aaaatcacta tcaatcttag tccttcaggc atcccaaaaa agggatcgca
     8401 ttttgatttg gctatcgctt tattaatcct tttgcaaaat gaagaattag atgacttttt
     8461 tgtagtagga gaattaggac ttgatggaag tattaaaagc acaaatgagc ttttttcttt
     8521 gcttttgttt ctctctgcta aaattaaaaa agctaagatc gttgttccaa aaagtatagc
     8581 acaaaaagct tccatgatac caaatttaga ggtttatgga cttgaaaatt taaatgaagc
     8641 aatagagttt tttaaagaaa aaaattatga aaattttcgc ttttctcaca atcatccttt
     8701 atttgcaaac cctttacaaa tagaaaatga aattttttta caaaatatgg attttaaact
     8761 tgattttaaa gatatcaaag ggcaggaaaa agccaaaaga gcttgtatga tagctgcttt
     8821 aggtatgcat aatatcttat ttgaaggaag tccaggaagt ggtaaaagca tgtgtgctaa
     8881 acgccttgtt tatatcatgc cccctcaaag tttaagtgaa attttaatgc aaaatgctta
     8941 tatgtcttta gattcaaaag attgtgaatt tactaaaatt cgtgcttttc gtcatcctca
     9001 tcatacttct acaagagcaa gtatttttgg cggaggaaca aaaaatgcca gaattggaga
     9061 agtagcactt gcaaatggtg gagtattgtt ttttgatgaa tttccacatt ttaacaagca
     9121 aatcatagag agtttaagag aacctttaga ggatcataaa attcatattt caagagtaaa
     9181 ttctaaaatc acttatgaaa caaaatttag ctttatagct gcccaaaatc cttgtccttg
     9241 tggaaattta ttctccaaaa atctttcttg tgtttgtagt gaaaatgaga ttaaaaaata
     9301 caaaaatcac atttcagctc ctattatgga taggattgat ctttatgtag ctatggatga
     9361 gatcagcaag gatgataaaa cgagtataag ttctaaagaa atgagtgaaa aaattttaca
     9421 agcttttatt tttagtaaaa aacgggggca aaaagaattt aatgggaaat taaaagatga
     9481 agatttaagt cgtttttgtg tattggaaaa agatgccaaa gatacgctag atttagcaat
     9541 ttcacgttat aatctttctt tgcgatcgct taataaaatt ttaaaagttt caagaagtat
     9601 agcggattta gaacaaagtc ttaatattag caaaacccat attttagaag ctttaagctt
     9661 tagagcaagg aattaaaatg gaaaataaaa gtatagctat ctttatagat gcagaaaata
     9721 tccctgcaaa atacgctaaa agtatttttg atatcgcttc agattacgga gaggttatca
     9781 ttaaacgcat ttatggggat tggactcaaa aaaatataca aggttggaga gagcaaattg
     9841 ctgaatattc tttaatcgct atgcaacaat ttaattttgc agccaacaaa aactcaagcg
     9901 atatgtattt aatcactgaa attatgtcca tattttatga aaaaaatata gatatttttg
     9961 ttattgtttc aagcgatagt gattatactt cactcattca aaaattaaga gaaaataaaa
    10021 aacaagttat aggaatgggg cttgaaaagt ctataaaatc ttatgtaaat gcctttagtg
    10081 aattttttta tttagataaa gatgagagta aaaaagaaga tattttaagt aaggattatt
    10141 taagagcttt aatcaatatc accgaacaac ttatcgatga aaaagggcgt gccgaatacg
    10201 cacaaatccg tactaatatg aaccgcaaat actcggattt tcatccgcaa aattatggtt
    10261 ttaagaattt tcgtgctttg atccagaaat ttttacccaa aatgaaaaaa tttgaagaag
    10321 aaagagaaaa aaatatatat tttttggtga aaaaagatta tgaaagctat tattgataat
    10381 ataaaaattt tagaacaaaa tgctataaat aaaggcttag atgagcttat tttaatggaa
    10441 aatgcgggat taaatttagc caagctaatt aaaaaagaag ctaaaaaaat tcgcattcaa
    10501 cgcaagatta gaaaagtaaa aatacttttt ttattaggcg ggggtaacaa cgcttcagat
    10561 ggcttggtgg ctttaagaaa tttaaaacac gctaaagctt ataaaatagg ctttaaagaa
    10621 aatacgcttt ttaaaaaaca agagcaaatt ttacaaaatt atgcttttaa attttgtaaa
    10681 aaagaaccca attttaaaaa atttcatatt atcattgatt gtattttagg tacaggttca
    10741 aatcgttgtt tagatgaaaa aacaagttta attattcaaa aagttaatca aagtaaggct
    10801 ttaaaaatag cttgtgatat acctacaaat ttgggatttt atccttgttt taaagctgat
    10861 attacatttt gtatgggagc tttaaaggaa attttacttg aagattttgc taaggaattt
    10921 gtaggaagga ttaaaatagc caatttaggc attagatcta agaaatttta ccctaattct
    10981 caagcttttt tgcttgaaaa aaaagattta aaaactatag atagaaaaat caacgccaat
    11041 aaaggaaatt ttggccatat ttatatagtt gccaatgcaa gtgctggaac tttagcagga
    11101 cttggagcct taaattttgg agcaggtctt gtttctttag tagcacaaaa aagtttctcg
    11161 cctcttttga tgttaaaaga aaaaattgaa aataatgcaa gtgctattgc tttaggtatg
    11221 gggcttgaaa atttggattt tctaaaagat gaaattttgc aaaacactcc tttgatcttg
    11281 gatgcaaact gctttttaag tgaagctttg ctttggtatt taaacagaaa agatgttgtt
    11341 ataacccctc atccaaaaga atttataaaa ctttataaaa tgtgctttga tgagaattta
    11401 gatatagaaa cattgcaaaa aaatcgcttt ttctatgcta gaaaattttc acaaaattat
    11461 gattgtgttc ttgttttaaa aggagcaaat cctattattg tgcaaaaaga aaaattattt
    11521 gttgtaaatt taggaaatca agccttagct aaaggtggga gtggagatgt tttaagtgga
    11581 atgattgctg cacatttagg ttttggtttt agcgctttag aagcagcaaa aaatgctact
    11641 ttagctcatg gacttgttgc aaaaaaatat aaatttaata aaaatagctt tgacgcttta
    11701 aaacttatca aaggattaaa atgcttgtaa aattagctgt actttttagt ggaaatggaa
    11761 gtaatttaga aaatatttta gaaaaacttc ataaaaaaac cataggggaa aatacctatg
    11821 aagtagtact ttgcatttgt aataaaaaag atgcttttgg tgtacaaaga gcaaaaaaat
    11881 ttggtcttga tactgtcatt gttgatcata aggcttataa tactcgtgaa gaatttgata
    11941 cgattttggt acaaaaaatc aaagaaagtg gagcaaatct tactgtatta gcaggtttta
    12001 tgagaatttt aagtcctgtt tttacaaaaa atattaaggc aattaacctt catccttctt
    12061 tattacccct ttttaaagga gcacatgcga ttaaagaaag ttatgaaagt gatatgaaag
    12121 tagctggtgt gagtgtgcat tgggtcagtg aagaacttga tggtggaatg attatagctc
    12181 aaaaagcttt tgaaaaaaga aatttgagtt ttgaagaatt tgaagaaaaa attcatagtc
    12241 tagaacatga aattttaccc ttaagtgtga ttgaaatttt ttcttaaaga attaaaggta
    12301 tttgctttaa aactataaaa tatcgcttta aaaaatttta aaattttcaa ggaaatttat
    12361 gtttgaatgg atatttagta ttgatgcttg gattacttta gctactttaa gtgctcttga
    12421 aattgtacta gggatagata atatcatttt tttagctatt ttagtaagca aactaccccc
    12481 tgaacatcgt gataaaggac gtatcttagg tttagctttt gcaatgatta caagaatttt
    12541 acttctttta tctctttttt gggtaatgaa acttgtaaca cctttgttta gtgtattggg
    12601 caatgaaatt tcaggaagag atctagttct tttactaggt gggcttttct tgattgtaaa
    12661 gtctattaaa gaaattaaag agcaaatttc tcatcaagaa gaaagtcaaa gtcattttaa
    12721 agcaagcaat aaactttgga tagttgtagc tgaaattgct gtgattgaca tagtgttttc
    12781 gcttgatagt gttattaccg cagtaggaat tgctcaagat gtaaccatca tgattatcgc
    12841 tgttattatc gcagtagctg tgatgctttt tgcttctaaa cctatagcag attttgttga
    12901 aaaatatcca agcattaaaa ttttagcctt agcttttttg gtgctaatag gcgtagtttt
    12961 agttgctgaa agttttgata ttcatattga taaggcatat atttataccg ctatggcttt
    13021 tgctttagtg gtgcaaattt taaatatttt agatcaaaga aaggaaaaaa atggctaaag
    13081 acgctaatgg aatagaactt aacacaggtg atagcgtgag tgtaataaaa gatcttaagg
    13141 ttaaaggtgc aagtacaact ttaaaacgtg gaactactat aaaaaatatt aagctcactt
    13201 ctaaagaagg tgaaattgag gctagagtag ataaatttgg cgttattgtt ttaaaaactg
    13261 aatttttaaa gaaaatctag gcaaagaatg tgcgaatctt acttgtttta agagggaatt
    13321 attacgcagg acaagaagaa tttatcaaaa ataataaact tcaaaattat acacttgatt
    13381 taaatgcttt gcgtctttta tcaggaagcg ttaaaaatat agtcagtgaa tataaaattt
    13441 taaatgttaa aaatgatgaa gatttgagta aaattttact caaacttcta gaaatgcgta
    13501 tgcaaaaagg tgagtttagc atcataaacg cttacaacga aacattaaaa atttataaag
    13561 acttagctaa acaatatcgc tataaaatat atgttattgt ttttgatagc tctttaaaac
    13621 aatgtcaaga aaaaaatctt ttagaagcta aaaaaaatgg atatatcatt ccttatgctc
    13681 ttttggaaaa aactcaagat ttgctcaaaa aaaatccaaa aaaataccca attttagact
    13741 caagagactg gaaaaaatgt ctttaccaaa tgccaaattt aagcaaatac aaaaaaattc
    13801 atcatatagg agatttacaa ggttgctata gtgttttaaa agaatacatt aaaacaatca
    13861 aagaagatga attttatata tttttgggag attatatcaa cagaggtata gaaaatggca
    13921 aagtaataaa atttctttta aaaatttgcg aaaaagaaaa cgtatgctta ttagaaggaa
    13981 atcacgaaag acatcttata aaatgggcta atggagaatt gtcaaattcc aaagaattta
    14041 atgaaaatac tttaaaggat tttagaaaag aaaaacttac tccaagagat gctagaaaac
    14101 tctatcctca tctaaaagaa tgtttatact acaaattcca aaataaattc atattttgtt
    14161 cacatggagg agtaaatttt ataccctcca aacctgaaaa aataagtttt ataccaagcc
    14221 atgactttat ttatggtgta ggtggatatg aagacagtca aaaagtagca aatcaatttt
    14281 gtaatttcac ctcggacaat ctttatcaaa tctttggaca cagaaataaa gaaaaacttc
    14341 ctatgaaaat agccaaaaga gtatttttat gcgagggtaa aatagatgat ggtggatatt
    14401 tacgcgtagt tacactagat gaaaaaggtt ttgagtgtat agaaattaaa aaccaaattt
    14461 acaaaaagaa ataagcctaa agaggcttat tcttcatctt tatttgtttt tttaaccacc
    14521 ttaacacgct ctatagaatt cccatccatt tttttaactt catagtaaca aagttcatct
    14581 tcaatgcgat ctcctaccat aggcaagcgt cctaaaagat taaatacata accacctata
    14641 gtaacttgtt ctaaatcctc atcatagttt attacaagca tttcttcaac agtttctata
    14701 tcgcatcgtc cttgaaattc atagatattt tcagcaagtt ttttatagct gtcttcttca
    14761 tgctcgcttt taatttcgcc aataatttct tccatgatat cttccatggt taaaattcca
    14821 gcagttccac catactcatc aactactaat gcagtatgag agcgttcttt attcatcatt
    14881 acaagtactt ttgaaatgct gatattttca ggaaccaaaa tcaaaggttt aacaaaagta
    14941 tctaaatttt gacttttatg gtttaattca ttttgtatta tatctcgtat gtgtatcata
    15001 cctaaaatag tatctttaga gccatcaata taaggaaagc gagtatgttt atgctcacaa
    15061 atgatttgca tattttcttc gtaacttttt tgtttattta gacaaatcat atcttttcta
    15121 ggagtcataa tctctttagc aacagtatct gaaaaatcaa cagcattgcg tatgatctct
    15181 gtttcaaatt catctaaaac tccacctttt tgactctcac ttgctatgat tttaatttct
    15241 tcttcgctat gagttagctc gctttcttta gcaggtttta ttccaaaaag tttcaaactt
    15301 atagctgcta aaaaatcgaa aattttaata caaggcaaaa agagcatcca aaaccaatga
    15361 agcggtctag ctataaataa aaccgcttta tctgcaactg caatagctat actttttggc
    15421 acaagttctc ctaaaaccac atgtaaaaga gtaataatgc taaaagcaat aatgaaagcc
    15481 atagtatgga taataacagt gctaaaacca agattaataa gcggaatttc tagcattttt
    15541 gcaatagcag gctcacctat ccaaccaaga gctagagaac ttaaagtgat tcctaattga
    15601 caagcactaa gataagtatc aagtcttgaa gtaacctcca aagctttctt ggcaccagct
    15661 tttttttctt ttaccatctc ttcaagcttg gaacgacgta ctttaacaat actaaattca
    15721 gacaaaacaa aaaaaccatt taaaaacact agagcaagtg caacaacaac cataagtata
    15781 gaatatcctg catcaaaaga tgctgtagaa gtttggttta aatccaaaac ctgactgggg
    15841 tccaatgaag ctccttaaga aataaaatat tattaaacct tattatacac aattaaaagt
    15901 aaatttaata tttgaatttt ttcttgtatt ttataagaaa aaactaagac ttataagaaa
    15961 tatttttctc aaattctttt aaacgcttat atatacttct aagttgagtg atagttgtcc
    16021 agtttgtgat aaaaatacta aaagagcttc gcacttgatc aaatgcatta ttaatctgca
    16081 ttacaatacc aagtcctata gctccagcaa aaagccctgg tgccatgatt aaaaatggca
    16141 ctataactat catttgctca aataaaatga gccaaatatt aaaatatcca taatgtaaaa
    16201 aaagtctttt atagttaaat ttaagccctg taaaaagctc tatcatagtc tcatttttag
    16261 cgtattcttt gcgattatcc tcagcataaa caagctcttt tctaaaagct gcttcagctt
    16321 tttgattatt gtattcaagt ccgggtagtt taatacctac aaaccatgac acaaccaagc
    16381 ctcctaaaga aatcaaaagt gcaatataaa caagcaaacc atcaatgttt tttaaaaaat
    16441 aaaaaaaaga attttcgctt aaatttgcaa ataaagcttt actcacaaca tcacttaaac
    16501 tccataaaat cggaataaat gctacaaggg tcatcaaagc ttttataaaa ctaagtccta
    16561 aactctctac gattttagaa aaattataag tatcttcttg aattctttgc gaacttcctt
    16621 ctatattgtc atctttattt ttccaaaatt ttaaataaga aaaagtcata gcctcacgcc
    16681 acttaaaagc atagacacta gcaaaataga tattaatcgt agcgattaaa acataaggaa
    16741 tagcaatagc taaaaaaact aaaatcaaag cataaaaatc atttgctgaa taatttggct
    16801 tttcaatcat agccctagag ttgaaaaaat attctaataa attttgataa taatacaatg
    16861 cgcctttatt gataaaatta gctttttgga aattttgctc agctctttga ttagcctctt
    16921 ggattaaagt ggcattattt tcaagatttt cttctatttt ttgcgtagaa ttagaatcca
    16981 aaagttctat ttttggcttt tgtaaaacat tgtaaaaatc actataccat gaatttatag
    17041 caacattaag acttgtttga atgaaaagaa aaaataagag taaaaaaagt cctaaataag
    17101 cccataaagc ccatttttta cttttaaaaa acgaagagaa cataatcatc acctttaaaa
    17161 taaaaattct aataaacttt ttttaatgaa aagtttattt tttacctaaa tagtctttaa
    17221 tattgtaatc aataggcata acaaaactga ttttatcacc attttttaac atttctttag
    17281 gcggttttgg caatggagaa gctcttttaa ataaacttaa agcttcatca ttgagcgctg
    17341 cataagggca agatttttta agctctttgc ttaagacatt tccgctttca tcaatgctta
    17401 cgcgaattct tacaacgcct tcttgttttt gtattatcgc ttcttgagga tattttttaa
    17461 atttagtcaa atgagccata agcaaagctt gatagctttt aacttgttct ttggcattgc
    17521 cacttactat agtttgtgtt ttatctttat tactttgtag cggagcactg agcgattcat
    17581 ttttaaattt tgaattttca cttgcattag ctatttcttt ttgagcttgg ttttcatctt
    17641 gcttttcaat ctttttttga acttttaata cagcattttt atcttgagaa ttaagactta
    17701 ttctttcgtc ttgttttttg tttttatctt gagaattact ctttttttga tcaatcgaaa
    17761 cttcttttaa ttccccgata ggaagctctg ataccatcat aatggaagta aattccgctc
    17821 cttgtttaaa atcaacacca cttgattttt cttgagtata aaaagaaaaa agggaaaaca
    17881 ttaatactaa agtatgcaat atcaaactta acacaaaccc aaaaatcaca ctagacttca
    17941 tactaatcca tctttttact tgaaagagct atttttccat agccattctc ttttaatttt
    18001 tgcattactt gcataatatc ttcatacttt acacttttat cgatatgaaa ataaataatt
    18061 tcttctttat tgcctttggt ttttatatct aaagcacttg aaagattttc taggcttaat
    18121 ttatcatcat taatagccaa agtattatca gtatttaaat aaagtatgat gggattttta
    18181 agcttatcct ctgcttgctg cgaactcttg ggtaattcta ttttgataga acttgtgata
    18241 agaggagtaa cagccataaa aacaatcaat aatacaagca taatatctat aaaaggagtt
    18301 atattgatct cacttaactc ctcttctttg tgagccattt cagtttttat cattaaaata
    18361 actcctatga aaaagtatat agacaaaatt tgcaagctca tctaaatggt gcataagttt
    18421 taaatttttt cttgtaagat aattataaaa aagcaccgca gggatagcag ctatcaagcc
    18481 aaaagctgta gcaaacaagg cttcagctat accaggcgca acgactgcca aagaagcatt
    18541 gccaagattt gctataccta taaatgcatt cataattccc caaactgttc caaaaagccc
    18601 tataaaaggt gcgctagcac ctatgctcgc aagcaaactc aagccatttt tgcttgctgt
    18661 gatttgcttt gagatggtat tttgcaaacg caattctata cgctctttta tgtgatcatt
    18721 tttatattca cttttttcaa gctcatcttg aatttctaaa gataaaacac ctgcaaaatc
    18781 ttttgtctga tctaattcat tgagattttt taattctttt atcttttgta tagacaagtc
    18841 tagatttttt ttcataaaat aaaattgcat aagcttagaa ataaaaactg cccatgctaa
    18901 aatggaaaat aaaaccaata tataaataac accttttacc acctcatcag cattttgata
    18961 aagactagaa agagaaagct ctattttagg tgcttcggtt tctatcttag aagaatcaaa
    19021 agataaattt gtatctgttg catttgcttc tgcatttaaa tttaacaata aaaaaacaaa
    19081 ataaaaacat ttttttaaca tttgtatatt ccttaatatt tatattcaaa acttactata
    19141 aaagtacgac cgcgagcaga attgctaaaa agatagatag gatcacctgc tccattatat
    19201 tgaagctgat tatctaagga attataagca tttaaggcat ccatgtagtt tttatcaaat
    19261 aaattttgca cctctgctct cattgtgagg tttttaaacc attctatatt ccaatataaa
    19321 tctactataa taggaatttt tggtaagtct tgtgtggttg gtttaggata ataaggattg
    19381 tttggatcct tattccaatc atctgtattt ggatttaccc tttttgcttt gcctgtgtat
    19441 tttgctatac caccaaagct tattttatca tttaacctaa agccaagctc tacatttgca
    19501 taatcttttg gaagctccat gattttactt gccgaaaaag agccaagaag aggtcctgaa
    19561 gtttgagaaa tagtcgaact tgtatcttgt cttgaataca tagctttagc ataagcaaaa
    19621 cccaagtcat agcttaattc taactccaca cccttaaata tggtatcatc agctgaattt
    19681 aagtgcatat aaaattgcga gcttggagga tctttacttg gatcttcaag ataaaattgt
    19741 tcattataaa tataatcttt tatttttgta tgataataca cggctttaaa accaaagcga
    19801 tcatcatctt ttaaaagtcc atgtttaaaa gaattaaaac ctatttgcca agtattggct
    19861 tgttctggtt ttaagaaaga attgatacca ttgccttcgt tatttgagaa aaacatttct
    19921 tgcacattag gggctctatt tgttctcgca aaacttacaa agggtgtaaa aagctcgtgt
    19981 atggcagctg aaagcatgac agaagcattc aggcgaagtc catttttatc tatatctgtc
    20041 gccgcttttg gaaaacacat aaaatttact tcatcgcaag caggtctgtg tcctttgata
    20101 ttccaatcta aaagattcac attggtatca agtgtaaaga taccataatt tagactatta
    20161 tcaagataat aagtaaaaag attttgtttt ccacgaggct gaaaaggtat agaatttact
    20221 ccttgaattg atgtatttaa ggtattttta taatcattaa gcaaaatatt tgctccaaag
    20281 cgtatgttta gattaaatct atgccattca ccctctaaag tatcacttat atcaaaagta
    20341 gtggcagtat tttttgcctt tgtgttagct atggcatcgt ttgccgcaaa agtagatttt
    20401 gatccatagg tttgtatgcc ttgattgtag gcaataagcg tatttacatt aagccactca
    20461 ttagggttgt gccaaaaatc aagttgataa ttgtcattgt gtatttttct accggcaagt
    20521 tcgttttgat atctacgata agaaaatata gtgtttgtaa aagaatttgg gacatattcg
    20581 agtttaaaaa gttgagagtt tggtttttgg gttaaaaaat ctggatcaaa aggagcgata
    20641 ttggtatcag ctataccatc tccatcagta tcaaccatac tactacctat cttgccaccc
    20701 ccgcctacag tgtaattttg agtaattctc tttgcgctat aaccaaaaag cgcgcccaca
    20761 tatccattat tttcaagttc agtctttcca gccactgcac tcatataact tggtccgatt
    20821 ccattgcttc cataagaaaa tcgtcctaaa aatccaaaga tattgccatc atgtacaata
    20881 tcatttatac ctatggtctt aaaatttgct gatcccatca aggcatttgc tccacctact
    20941 ccttcaaaag ttccccttgt aacatcaact ccgattaaga aatttgtatc aataacagct
    21001 ccaaaagctg aagttcccgt ttgtgaatga aatctagctg gatcatctga tgcactacca
    21061 taaaaagttt gagtaacacc gtcaatcatg gtattaacac gcccaaaacc actcatacca
    21121 cgaatattta cttgaactgt gccttgagct tgatctgtgt ttgtgtaggt tccaggtata
    21181 ctacgcacta tagaatctat actttgtgta tctgaaccta taccctctct tgtgcttgtt
    21241 gccccaggag ttacaaaagg tttttcatcg tttttgattt ttgaacctga aatttcaaga
    21301 ctatcaaatt ctaattcttc agaaaaagca aaactagcaa aacataaacc tacagcacaa
    21361 aataaactta attttttcat tcctccccct tataaatcaa aacataatca ctgtctttta
    21421 aatctatttc tccatagctt aaattcacta caactatttt tttactgctt ttaaaatctt
    21481 gtatatgtaa aggaattcct atttttttac ttgtatgata gcttccagct agcaataaaa
    21541 ctttatttac atgatgaacc aatacatcag ccatacgcct gtctttgaat tgttgaattt
    21601 ccaccaattt atctagtaat tctttatttt cttcaggatt tagcttatgg cttaaggata
    21661 taatgtcaaa aagttgtttt tttacttcat ttgtggttga aacataaccc tttaagggct
    21721 gagccccatt ataaatgctt gtaatttctg agcgtgaaag atttgcacct aatatttttg
    21781 actttgaata aaaaaccaca ttgacaaatt gctcataatc tttccatttc cagaccttat
    21841 cccaatttaa tgcattagta agttcattgg ctttaatggt ttttttattt ttaaaagctt
    21901 tatctaagtg attttgctct gtgcttgcta acatttctaa agctacatca aagtttatat
    21961 tttgagaact taaatttcct tctaaggcat taaaaatcat aacttgactt atcttatgtt
    22021 taacctcatc gtgtttttcg ccaagcagta tcacatctgc ttttagcaat tctaaaatca
    22081 tatcttcaaa agaaatcttt ttttgagtat gcgtatcaag tatataaaaa tctttatttt
    22141 cttgaagtgg agatgatttt tgcaaaacag cacaagcgct caacataaag cttataaata
    22201 gaatgcttaa aatagtataa aatttcatta ttattgttac tttcttagtg
//
LOCUS       DAPIWJ010000020        22184 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.020, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000020 DAPIWJ010000000
VERSION     DAPIWJ010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22184)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22184)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22184
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.020"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..509)
                     /locus_tag="RJ259_000575"
     CDS             complement(<1..509)
                     /locus_tag="RJ259_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366313.1"
                     /translation="MKILLLNENPVVSRLVSLSAKKMSYDFEELNAYSENLGNYDVIV
                     VDSDTPAPLKILKEKCDRLIFLAPRNQNVEDIDAQILQKPFLPTDFLNLLNNKDANKH
                     TSIDLPMLSNDENPYADISLDLDNLNLDDLPDENSLDINSEGMEDLSFDDDAQDDNAN
                     KTLETQNLE"
     gene            complement(566..1333)
                     /gene="fliR"
                     /locus_tag="RJ259_000576"
     CDS             complement(566..1333)
                     /gene="fliR"
                     /locus_tag="RJ259_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HDV7366314.1"
                     /translation="MEFVNYLGDKNVVTFMLLLARMGGLIVFFPFFSHNSIPMVIKST
                     IVLFLTMYLYPLARLESLHLDSFFVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAF
                     TMGFTMASILDPSSGTSMPITSQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
                     YPHENLMHYLNMGMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPI
                     KIALGFVVLIAILLVMMQYFKNLILELFTHMQTLFFF"
     gene            complement(1320..1955)
                     /locus_tag="RJ259_000577"
     CDS             complement(1320..1955)
                     /locus_tag="RJ259_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7366315.1"
                     /translation="MELLRAENLSHSFDYPLFEGLNLTLNTKDCIAIQGSSGCGKSTL
                     LHILSSLLIPKKGEVFFKGSSLYQIDENERLKIRRYDFGIIFQTHYLFKGFSALENIE
                     LASVLSGQDLDEKILKRLGIDTLLHQKIGKLSGGQQQRVSIARVLCKKPKIIFADEAT
                     GNLDFDNAKNVIELLISYVKENDAALFFVTHDSKLASFCDKTYTINANGIC"
     gene            complement(1968..3041)
                     /locus_tag="RJ259_000578"
     CDS             complement(1968..3041)
                     /locus_tag="RJ259_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HDV7366316.1"
                     /translation="MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREK
                     GLGKAAKKADRLAAEGLVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHI
                     QSNSLQSVEELHSSTINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHT
                     NGRVGVVIAAACDSAEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALV
                     AELEKENEERRRLKDPNKPEHKIPQFASRKQLSDAILKEAEEKIKEELKAQGKPEKIW
                     DNIIPGKMNSFIADNSQLDSKLTLMGQFYVMDDKKTVEQVIAEKEKEFGGKIKIVEFI
                     CFEVGEGLEKKTEDFAAEVAAQL"
     gene            complement(3041..3832)
                     /gene="rpsB"
                     /locus_tag="RJ259_000579"
     CDS             complement(3041..3832)
                     /gene="rpsB"
                     /locus_tag="RJ259_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HDV7366317.1"
                     /translation="MVSMRDLLECGVHFGHQTRRWNPKMKKFIFGERKGIYVIDLQKT
                     LRYFRYTYNIVRDAAAEGKTILFVGTKKQAGGAIKEYAEKCGMPYVNHRWLGGMMTNF
                     GTIRQSIRKLEVIEKMEEDGSIKLLTKKEALMLTRKKEKLLAYLGGIRYMKTQPDMIF
                     VIDTVKEKIAVQEANRLRIPVVAPLDTNCDPDLVTYPIPGNDDAIRSVQLFCQEMAEA
                     INEGKALREQDGEALANEEKEITDEEKKEVLDEAMSEEDFGEEQE"
     gene            complement(3948..5111)
                     /locus_tag="RJ259_000580"
     CDS             complement(3948..5111)
                     /locus_tag="RJ259_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDV7366318.1"
                     /translation="MLEKQMIKFILSKWNYGNFRIVFWDQEEFHVGNQPAKFSLIFKE
                     KIPFLKLFSDTSLVFAKHYMESKLEIEGDYDEIAKVLYYFSNKRFLKNTEDILSKIAQ
                     KQESKNIKSHYDIGNDFYKLWLDDTMSYSCAYFKEPNNTLYEAQINKIEHTLKKLDLK
                     EGEKLLDIGCGWGWLSIMAAQKYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQ
                     NYQDLEFENYFDKVVSVGMFEHVGKENLGLYFMKVKQVLKPGGSMLLHSILAMFEGKT
                     NAWIDKYIFPGGYLPSLREVVSAMSEWDFHLLLAESLRMHYAKTLDLWDENFNKVLDK
                     VREKYDEEFIRMWDLYLRSCASAFRVGSVDLFQFLITKEINNNLSFTKDYIYK"
     gene            complement(5239..6363)
                     /locus_tag="RJ259_000581"
     CDS             complement(5239..6363)
                     /locus_tag="RJ259_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDV7366319.1"
                     /translation="MREIKIFLVVVVFTALVYWGVEPYAHSVMKPHVAPANFDFAVED
                     TTFAKGIVEAKELALKDAQASGDAKRIESANKELEKAKEELSKVETLWADVAKIDFAK
                     GDAKKGKEFFENNCFACHGVKEDGIAANITDSSMGVIPPDLSAAGAIFDEKFLAALIM
                     HPALALKVDHKFGDAFIMTAYNKDTSGESEEATNANIANVIAYLKDVSVKFEANEDAT
                     IKKDVEAKYAKMENSAQKAALMEKDIKFAKDKATFIEACGRCHDMKYDSFFTPSNQND
                     LKTYLGSVPPDLSMMIRSRGEQYLHDFINNTQKLLPGTAMPRVGLTEAAQAKVVSYID
                     QVGDSKKEERKTTGIYVMIFFVILSIFAIGWKRSVWSKLH"
     gene            complement(6360..7610)
                     /locus_tag="RJ259_000582"
     CDS             complement(6360..7610)
                     /locus_tag="RJ259_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HDV7366320.1"
                     /translation="MAQIRKANGLVDWLDQRLAVHKLLDVLMVKYWIPKQINFLWAMG
                     VILTTLFAVLFVTGLLLVMYYKPDTALAFDSVNKTIMQEVDYGWLWRHMHGVAASVVF
                     LIIYIHMLTGIYYGSYKKGREMIWVSGMLLFVVFSAEAFSGYMLPWGQMSYWAAQVIT
                     NLFGGIPFIGPELVIWIRGDYAVSDPTLTRFFMLHVCLLPIVIIAIIAFHFYSLRIPH
                     VNNEISEELDFDLEAEKYMAGDTKGSKVIPFWPGFLSKDFMYISFFMIFFFYLVCFKF
                     EFAMDPINFDPANALKTPVHIYPEWYFLWSYEVLRGFFFDIAGIKAFDIGLAAFGIAQ
                     VIFFLLPWLDRSDVVKPAHERPLFFIWFWILLIDLIVLTVYGKLPPTGVNAWVGFYAS
                     IVFLLLLIVVLPVITIMERKGAKQ"
     gene            complement(7612..8115)
                     /gene="petA"
                     /locus_tag="RJ259_000583"
     CDS             complement(7612..8115)
                     /gene="petA"
                     /locus_tag="RJ259_000583"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HDV7366321.1"
                     /translation="MATSESRRSFMGFAFGSVAAVGGVFSLVAMKKTWDPLPSVKAAG
                     FTTVDLSGMQDGELRTIEWRKKPIFILKKDASMPKDEKRDVVVDNAAYTVVIGLCTHL
                     GCIPAYQPSEQLFKCACHGGEFDTSGKNVFGPPPKPLEIPPFKIDGTKLVLGEEGPEY
                     KKMIAEA"
     gene            complement(8206..9492)
                     /locus_tag="RJ259_000584"
     CDS             complement(8206..9492)
                     /locus_tag="RJ259_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HDV7366322.1"
                     /translation="MLAFFIFLSTLVLLFWRPWNLPIWVFSSLGAFFVFIFQLVDFKD
                     AYFVFSLVWDSSLTLVGLIILSFSLEALGFFDFIASKILHFSREKNQGKIYISTKKLM
                     LFLLIFVFFLSAFFANDGAILIITPIIIALFSTLKDCKNHAFILSSFLLSLSFLCDAS
                     SNALVISNLTNIITANYFKIEFLEFAKNMFLPNFFVLLSTIVMVFMLYVRVLPKRLEF
                     KLVKKEQISLKLFFLCIVFLLLFVISFFIGEIFDIKISFFALLWAGIVWLIILKIQGK
                     KSIKILFEAPYGVLLFSFGLYMVVFALHKIGVSEILVKSYAFLMQDKSGIFGVALISA
                     FGSSVFNNLPMVLIGDLALKEYFENFSFDSLMIYAHLLGVNIGPKLTPIGSLATLLWL
                     GVLARKGINISFWQYCKFGFLITLPVLVFSLFALIV"
     gene            complement(9493..11352)
                     /gene="mnmG"
                     /locus_tag="RJ259_000585"
     CDS             complement(9493..11352)
                     /gene="mnmG"
                     /locus_tag="RJ259_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HDV7366323.1"
                     /translation="MFDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNP
                     AIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRII
                     TRNKLLKLSNLEISQEQASVLIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHV
                     GENKLQAGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVN
                     PKAFSFRSRNFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIED
                     KINRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQIQMLRSVKGFENAKITRFG
                     YAIEYDYIEPTELKHTLELKKIKNLYCAGQINGTTGYEEAAAQGFMAGINASLSIDMK
                     EPLILRRDEAYIGVLIDDLVVKGTKEPYRMFTSRAEFRLLLREENAILRLGKYGYGLG
                     LLSEQDFTYIQNIANNLQKGLEFLLSKEFTPNNQNNAFLESLGEDKISSIVNLQKIVA
                     RASFDIEKLKKLDPIFETMDHYSLREILNEAKYYHYISMQKAQVEKMKNLSELKIPEN
                     FDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGITPAALDILQIYIKMQKKKA"
     gene            complement(11440..11937)
                     /gene="cetB"
                     /locus_tag="RJ259_000586"
     CDS             complement(11440..11937)
                     /gene="cetB"
                     /locus_tag="RJ259_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetB"
                     /protein_id="HDV7366324.1"
                     /translation="MSREIFLQEDSLITSKTDLKGRIVYANDDFLKYAGYTMGEVLNK
                     PHNIVRHEEMPKTVFKYLWDYMREGKEIFAYVKNKTKDNNYYWVFANVTPSIDVNNNI
                     IGYYSVRRMPNKSAISTIESLYSDLLRAEQQQGLNKGVEMLKNLCKDADKTYNELIFS
                     LQEAK"
     gene            complement(11955..13334)
                     /gene="cetA"
                     /locus_tag="RJ259_000587"
     CDS             complement(11955..13334)
                     /gene="cetA"
                     /locus_tag="RJ259_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetA"
                     /protein_id="HDV7366325.1"
                     /translation="MIKNGLLLTIFLSVIGVLGVIFIHIFVGAIIFVLIAVLMIYLFR
                     QHKDEQIMIDKLLVLCRELKEGNFDNRIIYVKTKSKKLAEIADNLNNTIDGLEAYLRE
                     INTSISCSQKGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSRTLMD
                     LSLGNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEVDSLQSAMGSLMDV
                     VNSSKETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVAD
                     EVRKLAERTQRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQAFKRL
                     EENSSTLGVNFGSFAKRLILSVVKIDHILYKSNIYLNLNGAQNFNLESVDPISNLCQD
                     ERAQGVINELSSETELNLAKEFIKDNAKKAIEESSQDYIDQKAYDAIVNDIKSLEQRS
                     AEILAKLKI"
     gene            complement(13438..13932)
                     /gene="cetC"
                     /locus_tag="RJ259_000588"
     CDS             complement(13438..13932)
                     /gene="cetC"
                     /locus_tag="RJ259_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetC"
                     /protein_id="HDV7366326.1"
                     /translation="MKEIVLSENALITSKTDLKGNIIYANNDFLKYAGYKVDELLYKS
                     HNIVRHEDMPRTVFKCLWDYIQKGDEIFAFVKNKAKDGNFYWVFANVSASFDTNGNII
                     NYYSVRRAPNRKSLSIIEEVYKILLEKEQKSGINAGVSALMDIVSSYKMTYNELIFNL
                     QENN"
     gene            14201..15577
                     /locus_tag="RJ259_000589"
     CDS             14201..15577
                     /locus_tag="RJ259_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HDV7366327.1"
                     /translation="METLSQTLAERKPPLYKRIIKSLGFWVIIGIITGIVLGYTDKEL
                     AIASKPGVDYFIGALKVLIGPIIFVTLVLGIISLESLKKVGSIGAKAVIYFEVVSTLA
                     LAIGIFMANVMQPGHGMNLDPSQLDTKSVQKYISQTTEVSASSEIMHILKDAMPTDII
                     TPFTEGKTIQVLVIAIITALIISLMRIEDKQAIQRVFEVVQNFVFKILQIIMYFSPIA
                     AFSAMAVLIAQYGIGSLINLAYLLLVMLISCLIFIFGILGLICYFAKVNIFKFMRFIS
                     REVLIVFATSSSESALAPLMRKLEKAGLSKATVGLVLPTGYSFNLDCTNIYLAMSLIF
                     LAQAFNVNLSLAHEISILIVLMIASKGAVGVTGSGFIVLGSTLAALGNMEISEANATL
                     AQVLPVAAIGVLLGVDKFMSEMRAVGNLCGNSVAALIVAIWDKQIDWEKFRYAMDNPE
                     KFHNAGMN"
     gene            complement(15574..16380)
                     /locus_tag="RJ259_000590"
     CDS             complement(15574..16380)
                     /locus_tag="RJ259_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta-barrel
                     domain-containing protein"
                     /protein_id="HDV7366328.1"
                     /translation="MRGIFYIIALFSLLNGDELTEALAKNNNQNSWEHFDYKNTKEAP
                     KIQEENVDFKSTFDSLLSKTLENNNGIDKTDGNLDFQNENAQVKNLSSLYEGENNSLL
                     FQKELFVAQNNYNYSGGLINRYEKDDFLFGVNGFIDKQKKQKDTKSFGTEFGYSKFIK
                     AYSNYYIPNEAEKNLQLGMSFVIPTYTAFAFDISKDNDKTNYQVSYSPYSVFSLNLLR
                     RDYSARETVDDTVVQVGFSFNFNESFLKQFRKKDNTLEEVNRYDFLQRTH"
     gene            16522..18048
                     /locus_tag="RJ259_000591"
     CDS             16522..18048
                     /locus_tag="RJ259_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HDV7366329.1"
                     /translation="MQKDNLIAFVIFIISTIAFVIWGFGYISQHQLILFILASIFGIF
                     MAFNIGGNDVANSFGTSVGAKTVTIKQALIIAAVFELSGAIFAGAEVTKTIRSGIVIF
                     PNSLDLMLFVIIMLAALLSSGVWIFIATKKGLPVSTTHSIVGGIVGASIMMGLLKFDG
                     IQTLSMVKWSEILRIAISWIASPLLGGIVAYIIYSYIDKKILKPSEKLNDDLKNIKKE
                     RKKFKEEYFLNLKTKSQEEQIKELSAIALDEEEQENNFYRNKMKEFKDQEKDIDIYSI
                     LKTHMPIIACIAAAIISAMFLFKGLNNVSTLDILQNFWIIGIIGTISYVVTFAIVKIV
                     KKTELNKTTDRIFSWFQIFTASSFAFSHGANDIANAIGPFAAILDVLKNGTINATSPV
                     PFAALAMFGVALVVGLWFLGKEVITTVGSKLATIRPTTGFSAELGASIVILLATQFGI
                     PVSSTHILIGAILGIGVYNKNANWIMMKPIGLAWIITLPAAGIMAALVFLGFKLSLGI
                     "
     gene            complement(18056..19234)
                     /locus_tag="RJ259_000592"
     CDS             complement(18056..19234)
                     /locus_tag="RJ259_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HDV7366330.1"
                     /translation="MIIKNAKIYGDSLQDIEIKEGKITNIDSNLQGEEILDAKGMTLL
                     PSFVDLCVSLKNDKFSLANLELLENECLKGGISSIVLRDCMDFDEESFALFLQNLAQR
                     KMQIFSSVRVKDTNGKLKNLATLLNKGACALELDSSLDANTLKVSSQYAFMKDSPIFV
                     RCYDKDFDDNGVMNDCEMSFELGLIGMSKIAETSQIAKMKELAKFYKNKVIFDLLSLK
                     DSLVLLDEKDLKLVSIHHLIKDDSACEDFNTAAKLMPPLRSKEDVLALREALKEGKIS
                     FLTSLHSAKSISLKDLAFDEAAFGIHSVCEFISLCYTFLIKEGFLNWQELCQFTSKNP
                     SEFLGLNSGVIEVGKEANLVLFDENEEIFAPKSSLYSEDKLFGKIKMHIIKGKNILEK
                     "
     gene            complement(19244..20140)
                     /locus_tag="RJ259_000593"
     CDS             complement(19244..20140)
                     /locus_tag="RJ259_000593"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HDV7366331.1"
                     /translation="MMRIAVIGAGKWGSALHLALKENHNCFISSLHQRDLEDFVSIKE
                     ALECEYLVFALSSQGMRAWLKENFINKGQKILIASKGIEDQSCQFLDEIFLDFVPKEN
                     FCVLSGPSFAAEVMQKLPTALMISGINQELCKKFASFFPDFIKTYIDNDVRGAEICGA
                     YKNVLAIASGISDGLKLGNNARAALISRGLIEMHRFGKFFGTKEETFLGLSGAGDLFL
                     TATSVLSRNYRVGLKLAQNQKLDSILAELNEVAEGVKTAYAIEKLAKMKGIYTPIVNE
                     VVAIFKGKSVQEATQNLLKQND"
     gene            complement(20137..21555)
                     /gene="gatB"
                     /locus_tag="RJ259_000594"
     CDS             complement(20137..21555)
                     /gene="gatB"
                     /locus_tag="RJ259_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HDV7366332.1"
                     /translation="MFEVVIGLEVHAQLNTKTKIFCSCATSFGEAPNTNVCPTCLALP
                     GALPVLNEEAVKKAIAFGKAVNATINKKSVFNRKNYFYPDLPKAYQISQFDIPIVEKG
                     ELFINVKGENKRIGITRAHLEEDAGKNIHESNFSKVDLNRAGTPLLEIVSEPELRSSD
                     EAVAYLKKLHSIIRFLDISDANMQEGSFRCDANVSIRPKGDTKLYTRVEIKNLNSFRF
                     IQKAIEYEVKRQSEAWEDGTYEQEVVQETRLFDTTNLVTRSMRGKEEAAEYRYFPDPD
                     LLPVLLKDEFLDIKIPELPDEKKVRFIDKLGIKESDAEVLISSLEMSRFFESLISQNL
                     NPKLCVNWLNTELMGLLKGELTIENSPVDAQKLGVLIKRIEDGTISAKAAKDVLAFVF
                     ENTSVEIDEAIEKLGLKQVSDDSAIEAVIEQILNANADKVAEYKSGKDKLFGFFVGQT
                     MKEGKGAFNPAKVNEILKTKLG"
     gene            21670..22164
                     /gene="luxS"
                     /locus_tag="RJ259_000595"
     CDS             21670..22164
                     /gene="luxS"
                     /locus_tag="RJ259_000595"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HDV7366333.1"
                     /translation="MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPN
                     KDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISPMGCRTGFYMSLIGTPDEKSIAK
                     AWEAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIINNKELK
                     LENA"
BASE COUNT         7666 a         4015 c         2854 g         7649 t
ORIGIN      
        1 tgttctaaat tttgagtttc taaagttttg tttgcattat catcttgagc atcatcatca
       61 aaactcaaat cttccattcc ctctgaattt atatctaaag aattttcatc aggcaaatca
      121 tctaaattta aattatctaa atccaagctt atatcagcat aaggattttc atcattgctt
      181 aacattggca aatcaataga tgtatgcttg ttcgcatctt tattattaag taaatttaaa
      241 aaatctgtag gtaaaaaagg tttttgtaaa atttgcgcat ctatatcttc tacattttga
      301 tttcgcgggg ctaaaaaaat caacctatcg catttttctt taagaatttt taaaggtgct
      361 ggagtatcac tatctacaac aatcacatca taattaccca aattttcact ataagcatta
      421 agttcttcaa aatcataaga cattttttta gcactaaggc ttacaagtct tgaaactaca
      481 gggttttcat ttaaaagtaa aattttcatc actttaatcc ttaaaaaata atcgctattt
      541 tacgataatt tcatttatcc tttccttaga agaaaaaaag agtttgcata tgagtaaaaa
      601 gttctaaaat taaattttta aaatattgca tcataactag taaaatagca atcaaaacta
      661 caaaacctag agctatcttt ataggatagc caataactaa aagattaaat tgtggcattg
      721 ttttcatcaa aagtccaaaa ataacatcgg ctaaaagtga aattccaagt ataggaaagc
      781 tcatagtaaa acctatgatg aaaatattaa acatacccat atttaaataa tgcattaaat
      841 tctcatgcgg ataaaatcca cctaaactaa tataacccaa agaatgactt aaaaacaaaa
      901 gcattaaatg atggccatca aaagcaagaa aaaacatcaa agcaagtaaa tttaaaattt
      961 gagatgtgat aggcatactc gttccagaac ttggatctaa tatacttgcc atagtaaatc
     1021 ccatagtaaa agcaatctgc tcacctgcca tcataataat agcaaaaata atttgaagca
     1081 ttaatcctgc tatcattcca aaaatcactt cactaataag ctgtaaaaca aaaaaactat
     1141 ctaaatgcaa agattctaat ctagccaaag gatataaata catagtcaaa aataaaacta
     1201 tagtactttt tatcaccata ggaatagaat tatgtgaaaa aaaaggaaaa aaaactataa
     1261 gaccacccat tctagcaaga agcaacataa aagttacaac atttttatca cctaaataat
     1321 taacaaattc cattggcgtt tatagtataa gttttatcac aaaaacttgc aagcttgcta
     1381 tcgtgagtta caaaaaataa agctgcatca ttttctttaa cataggaaat taaaagctcg
     1441 ataacatttt tagcattatc aaaatccaaa tttccagttg cttcatcagc aaaaataatc
     1501 tttggttttt tacaaagcac acgtgcgata ctcacacgct gttgttgtcc gccgctaagc
     1561 tttcctattt tttgatgtaa aagcgtatca atacctaacc tttttaaaat tttctcatct
     1621 aaatcttgac ccgataaaac actagcaagt tcgatatttt ctaaagccga aaaaccttta
     1681 aaaagataat gtgtctgaaa aataatacca aaatcataac ggcgaatttt taatctttcg
     1741 ttttcatcta tctgataaag actagaacct ttaaaaaaaa cttcaccttt ttttggaatc
     1801 aataaagaag aaagtatatg caaaagagta gatttaccac aaccgctact cccttgaata
     1861 gcaatgcaat ctttggtatt taaagtaaga tttaaaccct caaaaagcgg ataatcaaaa
     1921 ctatggctta aattttccgc tcttaagagt tccattttta accgttttta aagttgtgca
     1981 gcaacttcag ccgcaaaatc ttcagttttc ttttctaaac cttcgccaac ttcaaagcaa
     2041 ataaattcaa caattttaat ttttccgcca aattcttttt ctttttcagc aattacttgt
     2101 tctacagttt ttttatcatc cattacataa aactgaccca ttaaagtaag tttgctatcg
     2161 agttgagaat tatcagctat aaaactattc attttgcccg ggataatatt gtcccaaatt
     2221 ttttcaggtt taccttgagc tttaagttct tctttgattt tttcttcagc ttcttttaaa
     2281 attgcatcgc ttaattgttt gcgacttgca aattgaggaa ttttatgttc aggtttattt
     2341 ggatctttaa gtctacgtct ttcttcattt tctttttcaa gttcagcaac caaggctttg
     2401 tattcatttt caacaaaagt catatccaaa tcttcataac ttaaataact tggtctcatt
     2461 gctgcaatat gcatacaaat ttgtcttaat aaatctcttg attttgaagc tacttcagca
     2521 ctatcacaag ctgcagcgat cacaacacca acacggccat ttgtatgaat ataaccattt
     2581 acaacgccgt tagcacctgc ttttaaagtt gcaaatcttc ttacaactaa gttttctcct
     2641 atagttgcaa tttgactttt taaatattct tcaaatttta caccattaat cgtacttgag
     2701 tgaagctctt ccacactttg caagctattg ctttgaatat gagctgtagt atcttttgtt
     2761 aaagcgataa actgatcatt ttttgccaca aaatccgttt cggaattaat ctcacttaca
     2821 gttgcgcttg taaaatcatc acttactttt acacttacta aaccttctgc agcaagtcta
     2881 tctgcttttt tagcagcctt acctaaacct ttttctctta aaagttgtac tgctttatca
     2941 aaatctccat tagtttcact caaagcattt ttacaatcca tcatccccgc gcctgtactt
     3001 tcgcggagtt cttttaccat tgcagcagta atttcagcca ttattcttgc tcctcaccga
     3061 agtcttcttc gctcatcgct tcatctaaaa cttctttttt ctcttcatcg gtgatttctt
     3121 tttcttcatt tgctaaagct tcgccatctt gttctcttaa agcttttcct tcattaatcg
     3181 cttcagccat ttcttggcag aaaagttgca ctgaacgaat tgcatcatca tttcctggaa
     3241 taggataagt taccaagtca ggatcgcagt ttgtatctag tggagctaca acaggaattc
     3301 ttaatctatt tgcttcttga acagcaattt tttcttttac tgtgtcaata acaaaaatca
     3361 tatcaggttg agttttcata taacgaattc cacctaaata agctaataat ttttcttttt
     3421 ttcttgtaag cattaaagct tcttttttag ttaaaagttt aatacttcca tcttcttcca
     3481 ttttttcaat tacttctaat tttctaattg attggcgaat ggtaccaaaa tttgtcatca
     3541 taccgccaag ccatctatga tttacataag gcataccgca tttttcagcg tattctttaa
     3601 tcgctccacc tgcttgtttt tttgtcccga caaaaagtat agtttttcct tcggcagcag
     3661 cgtcacgaac gatattatag gtatatctaa aatatcttaa agttttttgt aaatcaatta
     3721 cataaatacc ttttctctcg ccaaaaatga attttttcat ctttggattc cagcgtcttg
     3781 tttggtgtcc aaaatgcaca ccgcattcta ataaatctct catactaacc atgagtttct
     3841 ccttataaat ttagctttat tcctccacat cccttaattt acacaagcta aaaaggattg
     3901 atgtgtgtga aatgaagcta agattttatc aaatttaagt ttagttttta cttatatatg
     3961 tagtccttgg taaagcttag attattattg atttcttttg tgattaaaaa ttgaaacaaa
     4021 tccacgcttc caacacgaaa agcagaggca caagaacgaa ggtacaaatc ccacattctt
     4081 ataaattctt catcatattt ttcccttacc ttgtctaata ctttgttaaa attttcatcc
     4141 cataaatcta aagtttttgc atagtgcatt cttaaacttt ctgctaaaag aagatgaaaa
     4201 tcccactcac tcatagcact tacaacctct cttaaagaag gtaaatatcc tcctggaaaa
     4261 atatatttat ctatccaagc atttgttttt ccttcaaaca tggctaaaat agaatgtaaa
     4321 agcatagaac ctccaggttt taacacttgt tttactttca tgaaataaag tcctaaattc
     4381 tctttgccta catgttcaaa catacccaca gaaacaactt tatcaaaata attttcaaat
     4441 tctaaatctt gataattttg aagtcttatt tctattttat cttcaagacc aagttctttt
     4501 actctttcct tagctttttt acactgctcc tctgaaatag taattccaac aaccttaact
     4561 ccatactttt gagccgccat aatagaaagc caaccccagc cacaacctat atctaaaagc
     4621 ttttctcctt cttttaaatc aagtttttta agggtatgtt ctattttgtt aatttgagct
     4681 tcataaagag tattattagg ctctttaaaa taagcgcaag aatagctcat agtatcatca
     4741 agccaaagct tataaaaatc attacctata tcataatgac ttttgatatt tttactttcc
     4801 tgtttttggg ctattttact caagatatcc tctgtatttt ttaaaaaacg cttatttgaa
     4861 aaataataca aaactttagc tatttcatca taatcacctt ctatttctaa tttagattcc
     4921 atataatgtt ttgcaaaaac taaactcgta tcactaaata attttaaaaa aggtattttt
     4981 tctttgaaaa ttaaagaaaa tttagcaggc tgattaccca catgaaattc ttcttgatcc
     5041 caaaatacaa ttctaaaatt tccataattc cattttgaaa gaataaattt aatcatttgt
     5101 ttttcaagca tgacatactc caactaataa aaattattat ttgatagtat ctcttaatta
     5161 tgtttaaaat ttgataaaat tgaagaaaag atagaatttt tgccacagat ataaaatagt
     5221 ggcaaaaatt ttataatact aatgtaattt agaccaaaca gaacgcttcc aacctatagc
     5281 aaaaatactt aaaattacaa agaatatcat tacataaatt cctgtagttt ttctttcttc
     5341 ttttttgcta tcacccactt gatcaatata agatacaacc ttagcctgtg cagcttctgt
     5401 taaacctact cttggcatag cggttcctgg aagaagtttt tgagtattat taataaaatc
     5461 atgtaaatat tgctcaccac gagatcttat catcatagaa agatcaggtg gaacagaacc
     5521 taaataagtt tttaaatcat tttgatttga tggagtaaaa aagctgtcgt atttcatatc
     5581 atgacaacgt ccgcaagcct caataaaagt tgctttatct ttagcaaatt ttatatcttt
     5641 ttccattaaa gctgcttttt gagcactatt ttccatttta gcatattttg cctcaacatc
     5701 tttcttaata gtagcatctt cattggcttc aaatttaaca ctcacatctt taagataagc
     5761 aattacattg gctatatttg catttgtagc ttcttcactt tctcctgaag tatctttatt
     5821 gtaagctgtc ataataaaag catcaccaaa tttatgatct acttttaaag caagcgcagg
     5881 atgcataatc aaagctgcta aaaatttttc atcaaaaata gcaccagctg cactgagatc
     5941 aggcggtatt actcccatag aagaatcagt aatattagct gctattccat cttcttttac
     6001 accatgacat gcaaaacagt tattttcaaa aaattcttta cctttttttg catcaccctt
     6061 agcaaaatcg atctttgcaa catctgccca aagtgtttca accttgctta attcttcttt
     6121 tgctttttca agttctttgt ttgcactctc tattctttta gcatctcctg aagcttgtgc
     6181 atcttttaga gctaattctt tagcttcaac tatacctttt gcaaaagtag tatcttcaac
     6241 agcaaaatca aaatttgcag gagcaacatg aggcttcatc actgaatgag cataaggctc
     6301 taccccccaa tatacaagtg cagtaaaaac tactacaact aaaaatattt ttatttctct
     6361 cattgtttag ctccttttct ctccataata gtaataaccg gtaaaactac aataagtaaa
     6421 agtaaaaata ctatagaagc gtaaaatcct acccaagcat ttacacctgt tggaggtaat
     6481 tttccataaa ctgttaaaac aattaaatcg ataagcaata tccaaaacca aatgaaaaat
     6541 aaaggtcttt catgagctgg ttttaccaca tcacttctat caagccaagg aagcaagaag
     6601 aaaatcactt gagcaatacc aaatgcagcc aaacctatat caaaagcttt aatacctgca
     6661 atatcaaaga aaaatcctct taaaacttca taactccata agaaatacca ctcaggataa
     6721 atatgaactg gtgttttaag cgcattagct ggatcaaaat taattggatc cattgcaaat
     6781 tcaaatttaa aacagaccaa ataaaagaag aaaatcataa aaaagcttat atacataaaa
     6841 tcttttgata aaaatcctgg ccaaaaagga atcactttag aaccctttgt gtcacctgcc
     6901 atgtattttt cagcctctaa atcaaagtca agttcttcag aaatttcatt attaacatga
     6961 ggaattctta aagaatagaa atgaaatgct ataatagcaa tgataactat aggaagcaag
     7021 cacacatgaa gcataaaaaa tcttgttaaa gttggatcag aaaccgcata atctccacga
     7081 atccaaatca caagctcagg gccaataaat ggtatccctc caaaaagatt agtgattact
     7141 tgagctgccc aataactcat ttgtccccaa ggaagcatat acccactaaa agcttcagca
     7201 gaaaatacaa caaacaaaag cataccgcta acccaaatca tctcacgacc ttttttataa
     7261 gaaccgtaat aaattcctgt tagcatatgt atgtatataa tcaaaaatac aacagaagcg
     7321 gcaacaccat gcatgtgacg ccaaagccat ccatagtcca cctcttgcat aatagtctta
     7381 ttcacactat caaaagcaag tgcagtatct ggtttataat acatcacaag taaaagtcct
     7441 gtaacaaaaa gcactgcaaa aagagtggtt aaaataaccc ccattgccca aagaaagtta
     7501 atttgctttg gtatccaata ttttaccatt aaaacatcaa gcagtttatg taccgcaagt
     7561 ctttgatcaa gccaatctac aagaccatta gcttttctaa tttgtgccat cttaagcctc
     7621 cgctatcatt tttttatatt caggaccctc ttcacctaaa acaagcttgg ttccatcaat
     7681 tttaaaagga ggaatttcaa gaggctttgg aggaggtcca aagacatttt ttccacttgt
     7741 gtcaaattct ccaccatgac aggcgcattt aaacaattgc tcacttggtt ggtaagcagg
     7801 tatacaaccc aaatgcgtac aaagtcctat aaccacagta taagctgcgt tatctaccac
     7861 aacatcacgt ttttcatctt ttggcatact cgcatctttt tttaatataa aaataggctt
     7921 tttacgccat tctatagttc taagctctcc atcttgcatt cctgataaat ctactgtagt
     7981 aaaacctgca gctttaacac ttggaagcgg atcccaagtt tttttcatcg caacaagtga
     8041 gaaaacaccg cctacagcag ctacgcttcc aaatgcaaag cccataaagc ttcgtctact
     8101 ctcagatgta gccataactt gctcctttcg attttatttt ttaaccaagt taaaagttta
     8161 tcgaaattaa aataaatttt ttctttgttt aacaagtttt gatatttaga caataagagc
     8221 aaaaagagaa aaaacaagca caggtaaagt tatcaaaaag ccaaatttac aatattgcca
     8281 aaaagaaata ttaatgcctt ttctagccaa aactccaagc caaagcaaag ttgctaaaga
     8341 acctattggc gtaagttttg gacctatatt tacacctaaa agatgtgcat aaatcatcaa
     8401 agaatcaaaa gaaaaattct caaaatattc ttttaatgcc aaatctccga ttaaaaccat
     8461 aggcaaatta ttaaacacag aagatccaaa agctgaaatc aaagccacac caaaaattcc
     8521 actcttatct tgcatcaaaa aagcatagct tttaaccaaa atttcactca cacctatttt
     8581 atgtaaagca aaaaccacca tataaagccc aaaactaaaa agcaaaactc cataaggtgc
     8641 ttcaaaaaga attttaatac tttttttacc ttgaattttt aaaataataa gccaaacaat
     8701 tcccgcccaa agcaaagcaa aaaaacttat tttaatatca aaaatttcac ctataaaaaa
     8761 actgatcaca aaaagaagta aaaatactat gcaaagaaaa aacaatttca atgaaatttg
     8821 ctcttttttg actaatttaa attcaagcct tttaggcaaa actctcacat aaagcataaa
     8881 aaccataact atagtagaaa gcaaaacaaa aaaatttggc aaaaacatat ttttagcaaa
     8941 ttctaaaaat tctatcttaa aataatttgc tgtgatgata ttggttaaat ttgaaataac
     9001 caaagcgttt gaacttgcat cacataaaaa agaaagacta agcaaaaaag aacttaaaat
     9061 aaaagcatga tttttacaat ctttaagagt tgaaaataaa gctataataa taggtgtaat
     9121 gattaaaatc gctccatcgt tagcaaaaaa tgcagaaaga aaaaagacaa aaatcaacaa
     9181 aaataacatc aatttttttg tgctgatata aattttacct tgatttttct ctctagaaaa
     9241 atgcaaaatt ttactcgcaa taaaatcaaa aaatcccaaa gcttccaagc taaaagaaag
     9301 gataatcaac ccaaccaaag ttaaagaact atcccaaacc aaagaaaaaa caaaataagc
     9361 atctttaaaa tctaccaatt gaaaaataaa aacaaaaaaa gcccccaagc tagaaaatac
     9421 ccaaataggt aaattccatg gacgccaaaa aagtaaaact aaagtagata aaaaaataaa
     9481 aaaagcaagc atttaagctt ttttcttttg cattttgata taaatttgta aaatatctaa
     9541 cgctgcagga gtgattccac tgatttgact tgcagcaaaa atggttggcg gtttatgatg
     9601 attaagtttt tctacaacct cattactcaa accacttaca cttttaaaat caaaattttc
     9661 aggaatttta agctcactaa gatttttcat tttttctact tgagcttttt gcatactaat
     9721 gtaatgataa tactttgcct catttaaaat ctctcttaag gagtaatgat ccatagtttc
     9781 aaatataggg tcaagttttt ttaatttttc tatatcaaaa cttgctcttg cgacaatttt
     9841 ttgaagattg actatagaag aaattttatc ttctcccaaa ctctctaaaa aagcattgtt
     9901 ttggttattg ggcgtgaatt ctttagaaag taaaaattca agtccttttt gaagattgtt
     9961 tgcgatattt tgtatataag taaaatcttg ctcgcttaaa agccccaaac catagccata
    10021 ttttccaagt ctaagtatag cattttcttc ccttaaaagc agtctaaatt ccgctcttga
    10081 agtaaacatt ctataaggtt cttttgtgcc ttttactacc aaatcatcga ttaaaactcc
    10141 tatataagct tcatcacgcc ttaaaatcaa aggctctttc atatctatgc ttaagcttgc
    10201 attgattccc gccataaagc cttgtgctgc agcctcttca taacctgtag ttccattaat
    10261 ctgtcctgca caataaagat ttttaatctt tttaagttct aaagtatgct taagttcagt
    10321 tggctctata tagtcatatt ctatagcata accaaaacgg gttattttag cattttcaaa
    10381 accctttaca gaacgcagca tttgaatttg tacctcataa ggcaaagaag tagaaaaacc
    10441 attgatataa tactccgtcg catcgatagt ttgaggctct ataaaaagat gatggctttc
    10501 tttgtcgcta aaacgattga tcttatcttc tatagaagga caataccttg gccccacacc
    10561 ttcaatctgt cctgtaaaaa gcggggcacg ataaaaatta ttcttaataa tctcatgtgt
    10621 agttgtatta gtgcgtgcga tataacaagg aagttgagta ggattgaaat ttcttgaacg
    10681 aaagctaaaa gctttaggat ttacatcacc atcttgaatt tcaagcacgc taaaatcaat
    10741 gctttttgca tccactcttg ggcaagttcc tgtttttaaa cgtcccattt ttaaacccaa
    10801 agtttgcaga taatttccta aatttaccga agcaagctcc cctacccttc ctgcttgaag
    10861 tttgttttca cctacatgaa taagtccatt taaaaaagtt cctgttgtaa gtatcacttt
    10921 tttggcaaaa tatgtgtttt ctaaatttgt tttcacgcct ttaacttcat cattttctac
    10981 gattaaaaca ctcgcttgtt cttgagaaat ttctaaattt gaaagtttta aaagtttatt
    11041 acgtgtaatg atacggtatt tatccatatc aatttgtgcc ctacttcctt gaacggctac
    11101 acccttactt tcatttaaaa tgcgaaattg tatccctgct tcatcggtga tttcacccat
    11161 aagaccaccc atggcatcaa gttcttttac caaatgtcct tttgcaagtc cacctatggc
    11221 tggattacaa cttgccgctc ctatttgctc aatcaatgta gttaaaagta aggttttttt
    11281 acccattcta gcagcagcag cacttgcttc aacacctgca tgtccaccac ctataacaat
    11341 gacatcaaac atattttgcc ttgaaaaatg tgaattttta aaagaaagat tatataatat
    11401 ttagacttaa aacaaactcg ttttaagtct aacaaaaatt tatttagctt cttggagaga
    11461 aaagattagc tcattataag ttttatctgc atctttgcat aaatttttaa gcatctcaac
    11521 acccttattt aagccttgtt gctgttctgc tcttaaaaga tcgctataaa gactttctat
    11581 tgtagaaata gcgcttttat ttggcatacg acgaacggaa taatagccta tgatattatt
    11641 attaacatct attgatgggg ttacatttgc aaaaacccaa tagtaattgt tatctttggt
    11701 tttgtttttt acgtaagcaa aaatttcctt accctctctc atataatccc ataaatattt
    11761 aaaaacagtt tttggcatct cttcatgtct tactatgtta tgaggtttat ttaaaacttc
    11821 acccatggta taacctgcat attttaaaaa atcatcattt gcataaacta ttctaccttt
    11881 taaatctgtt ttagaagtaa ttaaactatc ttcttgcaaa aaaatttctc ttgacatttt
    11941 cccaccctct taatttatat ttttaatttt gctaagattt cagcacttct ttgctctagt
    12001 gatttaatat catttacaat cgcatcataa gctttttgat cgatataatc ttgacttgat
    12061 tcttctattg cttttttagc gttatctttt ataaattctt tagctaaatt taactcagtt
    12121 tcagaactaa gctcattaat aacaccttga gctctctcat cttgacaaag attagaaatt
    12181 ggatctacac tttcaagatt gaaattttga gccccattta aatttaaata tatatttgat
    12241 ttataaagaa tatgatcgat tttaaccaca gataaaatca atctctttgc aaaggatcca
    12301 aaattaacac caagagtact actattttct tctagacgtt taaaagcttg agaaaattta
    12361 ttaattcttt cttcagattc actaacaatg ttaaaaactt gctcactgcc actttggata
    12421 tttacaaaat cttgttgcat agtctgaatt gcaatagaaa tttcacttgt agatctttga
    12481 gtcctttctg ctaattttct aacctcatca gccacaacag caaatcctct accatgctct
    12541 cctgcacgcg cagcttcaat agcagcattt aaagctagaa gattggtttg atcagctata
    12601 tcacgtatta cttcaaccac tgaagtgata ttttgagaat tagccacaaa agtttgcact
    12661 gtttccttgc tcgaatttac aacatccatt aaagaaccca tagcactttg taaagaatcc
    12721 acttctgagc cattttctgt agctgtatga gaaatggcat caactgtatc atatacattt
    12781 ttcatcatac taatatcttg atttaatgag ctagaaattt gagacatgtc tttattttga
    12841 tttccaaggc ttaaatccat taaagttctt gataaagcat ttttaaaagt agatcttgct
    12901 gtcacttcta tgtttgctaa agctttattt ataaattcga tattatgagc aaaaattcct
    12961 tttaaacctt caggtaaagc cttgcgataa aattcacctt tttgagaaca tgaaatagaa
    13021 gtattaattt cccttaagta agcttctagc ccatcaatag tattgttaag attatctgct
    13081 atttcggcta attttttgct ttttgttttt acatagatga ttctattgtc gaaattaccc
    13141 tcttttaact ctctacaaag aaccaaaagt ttatctatca ttatttgctc atctttgtgt
    13201 tgtctaaaca aataaatcat taaaacagcg attaaaacaa aaattatcgc tccaacaaaa
    13261 atatgaataa aaatgacacc taaaacaccg ataacactta gaaaaatagt taacaataat
    13321 ccatttttta tcataaattt acccttttta ttgaaaattt tttgaagtca taaatcaaaa
    13381 caatgcttta acttctaggt gaaaattata caataaaaaa gataaaatat atcttattta
    13441 attattttct tgtaagttaa aaataagttc attataagtc attttataag aacttacaat
    13501 atccattaaa gctgaaactc cagcattaat gcccgatttt tgctcttttt caagtaaaat
    13561 tttataaact tcttcaatta tagaaagaga ttttctatta ggtgcacgac gaacagaata
    13621 ataattgatg atatttccat tagtatcaaa tgaagcactt acatttgcaa aaacccagta
    13681 aaaattacca tctttggctt tatttttcac aaatgcaaaa atttcatctc ctttttgaat
    13741 ataatcccaa agacatttaa atacagtgcg tggcatatct tcatgtctta ctatattatg
    13801 agatttatac aaaagttcat caactttata acctgcgtat tttaaaaagt cattattggc
    13861 ataaatgata ttccccttaa gatctgtttt agaagtaatt aaagcatttt cagacaaaac
    13921 tatttctttc ataatttaaa acatcccaat aaaacaaata aatcaaaaat agaattatta
    13981 ccaataacaa acaacaaaaa gcaaactgaa ttgcaaaatt ataaaatttt caaaaatatt
    14041 ttaaatttta taatgcaaat aatgagaaat tttgtaacgt ttatataaaa aattgtcata
    14101 tcatataaaa gaaagtattt ctagatttgt ttttttgtta aaatttacga tacacattgt
    14161 taaaattata ttttacaaag atcaaaagga gtgaataaac ttggaaactt taagtcaaac
    14221 tttagctgaa agaaaaccgc ctttatataa acgtattatc aaaagtcttg gattttgggt
    14281 gattataggc attattacag gtattgtact tggctataca gataaagaat tagccattgc
    14341 tagcaaacca ggagttgatt attttatagg tgctttaaag gttcttatag gccctattat
    14401 ttttgttact ttggttttgg gcatcattag tcttgaaagt ttaaaaaaag taggtagcat
    14461 tggtgctaaa gcggttattt actttgaagt tgtaagtact ttagcacttg ctataggtat
    14521 ttttatggca aatgttatgc aaccaggcca tggaatgaat cttgatccaa gtcaacttga
    14581 tacaaaaagc gttcaaaaat acatttctca aaccacagaa gtaagtgcga gctctgagat
    14641 tatgcatatt ttaaaagatg ctatgcctac tgatattatc acacctttta cagaaggaaa
    14701 aaccatacaa gttttagtta ttgctataat tactgctttg attatttctt taatgagaat
    14761 agaagacaaa caggcaattc aaagagtttt tgaagtggta caaaattttg tttttaaaat
    14821 tctacaaatc attatgtatt ttagtcctat tgccgccttt tcagcaatgg ctgtactcat
    14881 agctcaatac ggaattggct ctttgatcaa cttagcatat ttacttttag taatgctgat
    14941 ttcatgtctt atttttatat ttggaatctt aggtctgatt tgttattttg caaaagtaaa
    15001 tatcttcaaa tttatgagat ttatctcaag agaagtattg atcgtttttg caaccagttc
    15061 aagcgagtct gcacttgctc ctttaatgag aaaactagaa aaagcaggac tttctaaagc
    15121 aacagtcgga cttgttttac caacgggata tagttttaat cttgattgta caaatattta
    15181 tctagctatg agcttaatct ttctagcaca agctttcaat gtaaatttaa gcttagcaca
    15241 cgaaatcagt attttaatag tattaatgat agcctcaaaa ggtgcagtag gtgtaactgg
    15301 atcaggtttt atagtgcttg gaagtacgct tgcagctcta ggaaatatgg aaatttcaga
    15361 agcaaatgca accttagcac aagttctacc agtagctgct ataggtgttc ttttaggtgt
    15421 tgataaattt atgtctgaaa tgagggcggt tggaaatctt tgtggaaatt cagtagcagc
    15481 tttaatcgtt gctatctggg ataaacaaat tgattgggaa aaattccgct acgctatgga
    15541 caatccagaa aaatttcata atgctggaat gaactaatga gttctttgga ggaaatcata
    15601 tcgattaacc tcctctaaag tattatcttt ttttctaaat tgctttaaaa aactttcatt
    15661 gaaattaaaa ctaaatccaa cttgaacaac agtatcatca acagtctctc ttgcactata
    15721 atcacgacgc aataaattta aactaaatac actataagga gagtaagata cttgataatt
    15781 agttttatca ttatccttac ttatatcaaa agcaaaagcg gtataagttg gaattacaaa
    15841 actcattcca agctgtaaat ttttttctgc ttcattgggt atataataat tactataagc
    15901 ctttataaat ttactataac caaactctgt accaaagctt ttagtatctt tttgtttctt
    15961 ttgtttatca ataaaaccat taactccaaa taaaaaatca tctttttcat aacgattgat
    16021 taaaccccct gagtaattat aattattttg agccacaaaa agttcttttt gaaaaagcaa
    16081 agaattattc tccccctcat aaagagaact taaattttta acctgcgcgt tttcattttg
    16141 aaaatctaaa ttcccatctg ttttatctat accattatta ttttctaaag tttttgaaag
    16201 taagctatca aaagtgcttt taaaatccac attctcttct tgaatttttg gagcttcttt
    16261 ggtattttta taatcaaagt gctcccaaga attttgatta ttattttttg ctaaagcctc
    16321 tgtaagttca tcgccattga gtaaagaaaa caatgctatt atataaaaaa tacccctcat
    16381 tattcttata ttccttatta tttcttgttt gagtatttat tataaaaaaa taatataaat
    16441 aaaaattcca caaagactaa aaaataaaat tagcaaattt aaagtaaata agtgtataat
    16501 taaaataaaa aagggttatt aatgcaaaaa gacaacctca tagcttttgt tatttttatt
    16561 atcagtacta tcgcatttgt tatttgggga tttggttata tttcgcaaca tcaattgatt
    16621 ctttttattc ttgcttctat atttggcatt tttatggcat ttaatatagg tggaaatgat
    16681 gtagccaatt cttttggaac aagcgttggc gcaaaaacag taaccattaa acaagcttta
    16741 attatagcag ctgtttttga gctaagcggg gcaatcttcg caggcgcaga agttactaag
    16801 accatacgca gcggtattgt tatttttcca aattctttag atcttatgct ttttgttatc
    16861 attatgcttg ctgcactttt aagctctggg gtttggattt ttattgcaac caagaaaggc
    16921 ttacctgtat caaccacaca cagtatagtt ggtgggattg taggtgctag cattatgatg
    16981 gggcttttaa aatttgatgg aatccaaaca ctctctatgg ttaaatggag tgaaatttta
    17041 agaatagcta tttcttggat agcttctcct cttttagggg gtattgtagc ttatattatt
    17101 tattcatata ttgataagaa aattttaaaa ccatcagaaa aactaaatga tgatttgaaa
    17161 aatatcaaaa aagaaagaaa aaaattcaaa gaagaatact ttttaaattt aaaaacaaaa
    17221 tcccaagaag aacaaatcaa agaactttcc gctatagctt tagatgaaga agaacaggaa
    17281 aataatttct atagaaataa aatgaaggaa tttaaggatc aagaaaaaga tatagatatt
    17341 tactctattt taaaaactca tatgccaatc attgcttgta ttgctgctgc tatcatttcg
    17401 gcaatgtttt tatttaaagg tttaaataat gttagcactt tagatatttt acaaaacttt
    17461 tggattatcg gaattatagg aactataagt tatgttgtaa catttgctat agtcaaaatc
    17521 gttaaaaaaa cagaacttaa taaaactact gatagaattt tctcatggtt tcaaatattt
    17581 acagcctcta gttttgcatt ttcacacgga gccaatgata tagccaatgc tataggtcct
    17641 tttgcagcga ttttagatgt cttaaaaaac ggcacaatta acgcgacttc tcctgtacct
    17701 tttgctgctt tagctatgtt tggagttgct ctagttgtag gactttggtt tttaggtaaa
    17761 gaagtgatta ctacagtggg ttcaaaactt gcaaccatac ggcctactac tggattttct
    17821 gcagaacttg gtgcaagcat agttatactc ttagctacac aatttggaat ccctgttagc
    17881 tccacccata tactcatagg tgctatcttg ggtataggag tgtataataa aaacgcaaat
    17941 tggattatga tgaagcctat aggattggct tggattatca ctttaccagc cgctggtatt
    18001 atggcagcac ttgtattttt aggatttaaa ctatctttag gaatttaagt aaagcttatt
    18061 tttctaaaat attttttcct ttaattatat gcatcttaat ctttccaaaa agtttatcct
    18121 cagaataaag agaacttttt ggagcaaaaa tttcttcatt ctcatcaaaa agaactagat
    18181 tagcttcttt gccaacttct ataactccac tatttaaacc taaaaattca ctaggatttt
    18241 tacttgtaaa ttgacaaagc tcttgccaat ttaaaaatcc ttctttgatt aaaaaagtat
    18301 aacaaagact tataaattcg catacgctat gaattccaaa agccgcttca tcaaaagcta
    18361 aatcttttaa agaaattgat tttgcactat gcagggaagt taaaaagcta atctttcctt
    18421 cttttaaagc ctctcttaaa gccaaaacat cttctttgct tcttaaaggt ggcataagtt
    18481 tcgcagccgt attaaaatct tcacaagcac tatcatcttt gataagatga tgaatgctta
    18541 caagttttaa atccttttca tctaataata ctaaagaatc tttcaaactt aaaagatcaa
    18601 aaataacttt atttttataa aatttagcca attctttcat tttagctatc tggctagttt
    18661 cagcgatttt actcatgcct ataagcccta gctcaaaact catttcacaa tcattcatca
    18721 ctccattatc atcaaaatcc ttatcataac aacgcacaaa aattggagag tctttcataa
    18781 aagcatattg tgaacttact tttaaagtat ttgcatctaa agagctgtca agctctaaag
    18841 cacaagcacc tttatttaaa agagtggcta aatttttaag cttgccgttt gtatccttaa
    18901 cccgcacact tgaaaaaatt tgcatctttc tttgagctaa attttgtaaa aataaagcaa
    18961 aactttcttc atcaaaatcc atgcaatcac gcaaaactat actagaaatt cctcctttta
    19021 gacactcatt ttctaaaagc tctaaattag ctaaagaaaa tttatcgttt tttaaactca
    19081 cacacaaatc cacaaaagat ggaagtaaag tcataccttt agcatctaaa atttcttcgc
    19141 cttgtaaatt agaatcaata ttggtaattt ttccttcttt aatctctata tcttgtaaag
    19201 aatctccata aatttttgca tttttaatta tcatgatttt tccttaatca ttttgcttta
    19261 ataaattctg cgttgcttct tgcacgcttt tacccttaaa aattgccact acttcattta
    19321 caataggtgt ataaattcct ttcatttttg ctagtttttc tatagcataa gcagttttta
    19381 caccttctgc tacttcatta agttcggcta aaatactatc taatttttga ttttgcgcca
    19441 gttttaaacc cactctataa tttcttgata aaacactcgt tgcagttaaa aacaaatccc
    19501 ctgccccact caatcctaaa aaagtttctt ctttagtgcc aaaaaattta ccaaaacgat
    19561 gcatttctat aagtcctctt gaaatcagtg ctgctcttgc attattacca agttttaacc
    19621 catcactaat cccacttgca attgctaaaa cattcttata agcaccacaa atttcagcac
    19681 cacgaacatc attatcaata taagttttaa taaaatcagg gaaaaaactt gcaaattttt
    19741 tacaaagctc ttgatttatc ccgctaatca tcaaagcagt aggaagtttt tgcatcactt
    19801 cagcagcaaa agaaggaccg cttaaaacac aaaaattttc ttttggtaca aaatctaaaa
    19861 aaatttcatc taaaaattga caactttgat cttctatacc ttttgaagca attaaaattt
    19921 tttgcccctt gttgatgaaa ttttctttaa gccaagcacg catcccttga gaacttaaag
    19981 caaaaacaag atattcacat tctaaagctt cttttatgct aacaaaatct tctaaatcac
    20041 gctgatgcaa agaactgata aaacaattgt gattttcttt taaggctaga tgtaaagcac
    20101 tgccccattt tcccgcacca ataaccgcta tacgcatcaa ccaagctttg tttttaaaat
    20161 ttcatttact tttgcaggat taaaagctcc tttgccttct ttcattgttt gacccacaaa
    20221 aaatccaaaa agcttgtctt taccactttt atactctgca accttatcgg catttgcatt
    20281 taaaatttgt tcaatcaccg cttctatggc tgaatcatca cttacttgct taagtcctag
    20341 cttttctata gcttcatcaa tttccacgct agtattttca aatacaaaag ctaagacatc
    20401 tttagccgct tttgcactga tagtgccatc ttctatgcgt ttaattaaaa ctccaagctt
    20461 ttgagcatct acaggagaat tttctatagt caattctcct tttaaaagtc ccataagttc
    20521 agtatttaac caatttacgc aaagtttagg atttaaattt tgagaaataa gactttcaaa
    20581 aaaacgactc atttctaaag aactgattaa aacctctgca tcactttctt ttataccaag
    20641 cttgtctata aagcgtactt tcttctcatc aggaagctca gggattttaa tatccaaaaa
    20701 ctcatctttt aataaaacag gcaataaatc aggatcagga aaatagcgat attctgccgc
    20761 ttcttctttg ccacgcatac ttcttgtaac taaatttgtc gtatcaaaaa gtctagtttc
    20821 ttgaactact tcttgttcgt aagttccatc ttcccaagcc tcactttgtc tttttacctc
    20881 atattctata gctttttgga taaaacgaaa agaattaaga tttttaatct ctactctagt
    20941 ataaagtttt gtatcgccct taggtcttat actaacattt gcatcgcatc taaaacttcc
    21001 ttcttgcata tttgcatctg aaatgtctaa aaagcgtata atagaatgaa gttttttaag
    21061 ataagctact gcctcatcgc tacttctaag ctcaggctca ctgacaatct caagcaaagg
    21121 agttcctgca cgatttaaat ctactttaga aaaattactt tcatggatat ttttacctgc
    21181 atcttcttcc aagtgcgctc ttgtaatacc tatgcgttta ttttcaccct ttacattgat
    21241 aaaaagctca cccttttcta ctatagggat atcaaattgt gaaatttgat aagccttagg
    21301 taaatctgga taaaaataat tcttacgatt aaaaacactt tttttattaa ttgttgcatt
    21361 gacagctttt ccaaaagcta tagctttttt tacagcctct tcatttaaaa caggcaaagc
    21421 tcctggtaag gccaaacaag tgggacaaac attggtattt ggagcttctc caaaagaagt
    21481 tgcacatgag caaaagattt ttgtttttgt atttaactga gcatgaactt caagacctat
    21541 aactacttca aacataaaat ttccttgaat ttttaaatgt tttattttat ctttttttct
    21601 tttagaaagg ctttaaatat taactttaaa tgctataatt cttagacaat ttatatttaa
    21661 ggagttaaaa tgccattatt agacagcttt aaagttgacc atactaaaat gccagctcct
    21721 gctgtgcgtt tagctaaagt tatgaaaaca cctaagggtg atgatattag cgtatttgat
    21781 ttgcgttttt gcataccaaa taaagacatt atgagcgaaa aaggtactca taccttagaa
    21841 catttattcg caggatttat gagagatcat cttaattcaa attcagttga aattattgat
    21901 atttcaccta tgggttgtcg cacgggtttt tatatgagtt taattggaac acctgatgag
    21961 aaaagtattg caaaagcttg ggaagcagcc atgaaagatg ttttaagcgt aagcgatcaa
    22021 agcaaaattc ctgaacttaa tatctaccaa tgcggaactt gcgcaatgca ttctttagat
    22081 gaagccaaac aaattgccca aaaagtttta aatctaggta ttagcataat aaataacaaa
    22141 gaattaaaac tcgagaatgc ttaaaaagaa tctttatttt ttaa
//
LOCUS       DAPIWJ010000021        19784 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.021, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000021 DAPIWJ010000000
VERSION     DAPIWJ010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19784)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19784)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19784
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.021"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1294)
                     /locus_tag="RJ259_000596"
     CDS             complement(<1..1294)
                     /locus_tag="RJ259_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HDV7366334.1"
                     /translation="MKLKLNFLPYFSFIPKKLNTNSIIFKIIKVFFIAILLSNSIYLS
                     FFENIFTQTISPFLAIWGLVLLLKSKTSKQYFWIGFFVGILWFWWIGLSSIYFNLNYL
                     VPIIPIIIGFIYGLLFRLCYLLKFDFLRLCGIFCISFIHPLGFDWFNWGIFTVYGFFD
                     PSYRGIICIFLIAYFIYEGYISRYYKIAIVLILFFSGFQYNEKQAQTLNLNYKLINTN
                     ISQDQKFLQENLKSNSDILIQDILQAINEKKELVILPETAFAFDLKNTKYELMLKELS
                     YKITIITGAFHVEKEHTYNSTYIFKKGNVYILNKHFLVPFGEEIPFFKDLTKKYFLKN
                     IEEFSKGPIQSKYKLDNQIITNAICYEATKEQNYQNSQIIIALSNNAWFNNSSEYKLQ
                     QLLMKFYASKYGVSVYHATNGKENIVILPKKLLSKDWKN"
     gene            1267..1539
                     /gene="yajC"
                     /locus_tag="RJ259_000597"
     CDS             1267..1539
                     /gene="yajC"
                     /locus_tag="RJ259_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDV7366335.1"
                     /translation="MAENSILTSLLPLVVLFAIFYFLVIRPQQKQAKAHKQMLESLQK
                     GDKIITNGGLICEVVKPEEDFIKVKLNEDNVTAKISREFIAKKIDA"
     gene            1532..3112
                     /gene="secD"
                     /locus_tag="RJ259_000598"
     CDS             1532..3112
                     /gene="secD"
                     /locus_tag="RJ259_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HDV7366336.1"
                     /translation="MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSERGAKINLGLDLQ
                     GGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIA
                     KVENLLKEIKGINIQSENMHYKISFTSKEVKNIENFALLQAVETIRNRLDQFGLAEPT
                     VAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS
                     YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGLSDKSNYPVINFTLNAEGSKKFA
                     DYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALL
                     APVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVL
                     VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYK
                     NAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFM
                     QRIEKNNNTRFWFGYRRR"
     gene            3112..4083
                     /gene="secF"
                     /locus_tag="RJ259_000599"
     CDS             3112..4083
                     /gene="secF"
                     /locus_tag="RJ259_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HDV7366337.1"
                     /translation="MQFFSEKKIYDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGID
                     FSGGTLVQLKYENAAPITQIREILENQGTFQNLSVTEFGSNEEVTIRFLGSNDNVSND
                     IGEHISTLLKDTGKFEVRRADVVGPKVGDELRNKGLMAIAVSLIAILIYIALRFEWRF
                     ALAAIISEIHDVVITLGAISLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGIKT
                     SKKTELAPIINESVSATLSRTVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIIAGT
                     LSSIFVASPTLLWFKFSVLEFRNKEIEKAKRKQDKERNRAMYEKGTV"
     gene            4093..6522
                     /locus_tag="RJ259_000600"
     CDS             4093..6522
                     /locus_tag="RJ259_000600"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HDV7366338.1"
                     /translation="MAYEASLIEKKWQKIWDENEYFEPKDDLNLPKKYILSMFPYPSG
                     RIHMGHVRNYTIGDALARYYRKIGFNVLHPIGFDSFGMPAENAAIKHKIHPKSWTYEN
                     IAYMKKELFSLGFSFSKKRMLATSDPLYTKFEQEFFIKMFEKGLIYTKEANVNWCEQD
                     QTVLANEQVEDGKCWRCGHEVVQKKMPGYYVKITAYAEELLKDLEELKDKWPNQVLTM
                     QENWIGKSEGLEFSLNLDEESKQKTKESSLEVFTTRADTIYGVSYIALAPEHKIVQNL
                     LSQNLLNQDVLNKIKVIQNQSPRERQSSEKEGYFLGIYAIHPLSGEKIPLWVANFVLA
                     DYGSGAVMAVPAHDERDFEFATKYNLAIKQVIQTQENLPYMQKLGKLINSQEFDNLDC
                     NEARLKIISQFEAKNIGKRVVNFKIRDWGVSRQRYWGAPIPMIKCQSCGIVPQKLENL
                     PITLPEDVQITGEGNPLDKHPTWKNCICPKCGKEAQKESDTLDTFFESSWYFARFASD
                     EKTWQEKALDEKSVKYWMSVDQYIGGIEHAILHLLYARFFQKALRDLGYLTQNEPFDR
                     LLTQGMVLKDGAKMSKSKGNVVDPDEIIEKYGADTARLFILFAAPPAKELEWNDDAVE
                     GAYRFICKLYDRAQNVKKGELVELKQENLNKEEKYARLKVYEALKKSFEVYHQSFAFN
                     TLIAACMEALNALALCKNEALEQEAFYIILNILEPIIPHVCFELSEELFKCKNFKKLE
                     LKEEVFVKDTLNLAVSINGKKRAEFEISSSASKEEILAFAKENTAKWLEGKSIVKEIY
                     VEGKLVNLVIK"
     gene            6519..7031
                     /locus_tag="RJ259_000601"
     CDS             6519..7031
                     /locus_tag="RJ259_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7366339.1"
                     /translation="MKKILIFCIGLFLGACGYIPTSKIANNIFDEKVYVNVELSQQDP
                     KNSIYVADTLKEMVISKLGRKLALKHEADDVINVKMNNLEFIPLAYDKNGYVISYKAK
                     LNLDFNVVFKDGSSQAFSTSGSYNFEISPNSIISDSARYEAIRAASSEAFDEFISVIA
                     IKGQKRDSKY"
     gene            7015..8412
                     /locus_tag="RJ259_000602"
     CDS             7015..8412
                     /locus_tag="RJ259_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366340.1"
                     /translation="MIPNTNEIAKQTLIALKERKLKPTPENYTEIFEELSLKYGITSS
                     NKAKLDKYKTLLLPIYQQELNSKTIRSLEELISFLISVLNRQSGKQFSEFFDFLYTIS
                     KTLQISKDKKIRDLAKVTSIRISKTMDSESIYLLTKKWKELERNYDENDLEEQARKYG
                     ISKYEDYDSVIKKLLVKLEERSYEHFSELLCLGLNPSLVEDLKIQGFIQNLTQKPFVI
                     GEENFKNELMEFINHRIMVDNMYVQKNLNFFNDNLKKIYELLVLLNKSNEKNMDFINT
                     LKPDENGEVKLSFEDLKLKFKQLGEKITSLNNQIEFTQSLEEREAWSVLKELDKMDEN
                     FNKYKVNYSLALFSIVNYRFIMEKYGMGSLNEIFVRFKKILKDSCSEFDELWMIDEKS
                     YLIVSPGKSKDEITQLVNTNLKTIENFRFIYKQDIITPKIHVAYLDKQSKPSINILDE
                     LIKQIAAVNEQHNES"
     gene            8378..9562
                     /locus_tag="RJ259_000603"
     CDS             8378..9562
                     /locus_tag="RJ259_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HDV7366341.1"
                     /translation="MQRLMNNIMKVENFLAQKSINYDKIDRFLMFRMYEKYKKYFKNI
                     PIIQLIGTNGKGSTGRYLTQLLENLNYKIGHYTSPHIFSFNERFYLDGKIANDEELEQ
                     AHIRLEEIFKQDLQKLSYFEYATFLAMILFQKCDFIVLEAGVGGEYDATSIFERRMSI
                     FTRIGFDHIQILGNSLEDIARTKLKVMAPIALISDEQEQNVLNLAKKIAFLKKANLQV
                     SSLNPFLKEKFEIYCKKFVLPYFLKHNLKLALKACEILTSQEKTLEALKKLQELNLQG
                     RCQEISPNFFVDVGHNPMAAKAMLDKFQGEKINLIYNAYLDKDIFQILNTLKPIIDTI
                     QIYKYKSAERKLADDEIYSIASKLGMQCKEFVKLEENKKNLVFGSFMLVENFLKEWCG
                     KK"
     gene            9549..10451
                     /locus_tag="RJ259_000604"
     CDS             9549..10451
                     /locus_tag="RJ259_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HDV7366342.1"
                     /translation="MVKNKFTITITDINGSRHFYLNQIIKKIVFYIIAFIVLFLVFSG
                     FYIKYLDSKLSDISEKREELLKKSKELELSNSQMQKSIEEKTQQYAAIEDKIASFEEA
                     LGLEAENNLTISARLDNLQLTNEQQLGILGQIPNGWPIENKGITGNFGWREHPLLKRR
                     EFHPGIDLRAEIGTPIYAPASGVVEFSGYSDNGYGYNVILLHNFGFKTVFAHMMRKEV
                     VKAGQFVNKGQLIGYSGNTGLSTGPHLHYEVRFINKTLEPLYFLNLQRKNMNDFFNQE
                     RRVPWQSLIKAVSAQHPALAQKQQ"
     gene            10388..10783
                     /locus_tag="RJ259_000605"
     CDS             10388..10783
                     /locus_tag="RJ259_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HDV7366343.1"
                     /translation="MAIFNKGGISPTSSSSSETTVISSGARIEGKFYFASMLHVDGEL
                     SGIIHSESIVVIGKNGNLKGELQADKIVVNGCFEGQLEANSLEILAGGVVNGDISTQK
                     ISIENGGRFNGTSKIKEDTIKLIENNNEE"
     gene            10783..13719
                     /locus_tag="RJ259_000606"
     CDS             10783..13719
                     /locus_tag="RJ259_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HDV7366344.1"
                     /translation="MQASFYEYLQNPKICELLLCKDEKQADLLAQVSRFKGLKTFVLP
                     DFRAQFGDDLRAFSKELFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHI
                     DKKQNFDLKCFEDEISRLGYEFVDIVQDKGEISIRADIIDIFCINEENPIRILLFGEE
                     IESIRYFDLQSQKSIPNELEYFEICPFLKYFDKENYEIFKDKLEDFQSDTLIHDINSL
                     GFWCIDDFFDYLELDFLACEKFDINEYEKDISFVNAKILPQAKKFKELQSSYNKDFFE
                     FHKNKKITLLAKNEALFKALELEDTQNIHFVKSDLRLNLISPEELIISLNQKEKQKTR
                     KKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSDKLLLPVEN
                     LYLIDKYLGVSGSIPSLDKLGKTSFIKLKEKLKTKLLAIASKIVIMAAKRSLVQAKKI
                     TVDLNRQADFITSAGFIYTSDQEKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA
                     IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNL
                     KENKACVVVGTHALLSVECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPI
                     PRSLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDDALLKEAIARELRRGGQIFYIHN
                     HIASIEQCKKHLLELFSTLRILILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVESGI
                     DLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL
                     ESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEV
                     DQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEVYEIEGEIEDRFGKL
                     DIYTKQFLSLITIKILALNKFKSISNYEQNIQFTALNDEKELIKAKSKDDDDILEAIL
                     THLRKA"
     gene            13721..14482
                     /locus_tag="RJ259_000607"
     CDS             13721..14482
                     /locus_tag="RJ259_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7366345.1"
                     /translation="MDWNKTYAAIYRARKDYLKPIFEIDPIALKDLVGMESQKKALYE
                     NTLNFIQDKGANHALLWGSKGTGKSSLIKAIFNEFKEQGLRLVELNKEDLFALADIID
                     EIRLENFKFILFCDDFSFEKGDDSYKFLKPLLEGSIEKAPNNVIIYASSNRRHLLSES
                     ITDNLDTQITHTELHLSDAAEERLSLSDRFGLWLSFYQGNLEEYLKMIDFYFKDYSCD
                     KELLHAKAKEFATLRASRSGRTAKQFYLAFKENFK"
     gene            14479..15165
                     /locus_tag="RJ259_000608"
     CDS             14479..15165
                     /locus_tag="RJ259_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HDV7366346.1"
                     /translation="MTGAQIFTKLLNLDLNYHDFDWLENQGLSEFELLISVVLTQNTN
                     WKNVLKALENLKKENIASLEQINTLSNLELATLIKPSGFYNTKTKRLKGLVESIINTY
                     ENLENFKTNASREWLLNIKGLGFESVDSILNYLCKREILVVDNYSLRLAFYLGYEFEN
                     YEELREFFQSDIESEQENLYKILGKKCELYELYQIFHALIVAFAKQSFKGQKLSPKGE
                     EWIKILKEDL"
     gene            15162..15974
                     /gene="thiD"
                     /locus_tag="RJ259_000609"
     CDS             15162..15974
                     /gene="thiD"
                     /locus_tag="RJ259_000609"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HDV7366347.1"
                     /translation="MKAKGSELIPVLTIAGSDCSGGAGIQADLKTFSAHNLFGMSVIL
                     SVVAENTARVISVHDIPTQSVDEQMLAVFEDIVPKATKIGMIGSCELMSCVAKNLSEF
                     KPQNVVIDPVMFAKNGHALMPQENCDFFKQTIIKFADILTPNIPEAEFLCGFKIANEE
                     QMIKAAKHLCSLGTKAVLLKGGHSEANANDVLYNGKEIYILKGERIETKNTHGTGCTL
                     SSAIASNLAKGKDLFHAVSEAKEYVRNAIYYSLNLGKGCGPTNHFFKFLDEK"
     gene            15964..16596
                     /gene="thiE"
                     /locus_tag="RJ259_000610"
     CDS             15964..16596
                     /gene="thiE"
                     /locus_tag="RJ259_000610"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDV7366348.1"
                     /translation="MKNKLDLSLYLVATKGNKSEECFLNTLENAIKGGVSIIQLREKE
                     LNAREFYKLGLKVQKLCKSYKIPFLINDRVDIALALDADGVHLGQEDLEAKLARKLLG
                     DEKIIGLSLKKLEQLEFIQGVNYLGCGAIKATPTKESSLLSLELLSQICDKSPIGVVA
                     IGGIDKEALVELKGINLSGVAVVRAIMDAKDAFLAAKELKRKIYENLSLK"
     gene            16574..17203
                     /locus_tag="RJ259_000611"
     CDS             16574..17203
                     /locus_tag="RJ259_000611"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HDV7366349.1"
                     /translation="MKIYLLNETPFEGVENLILNEIVFYDFSVDLSLYDALICTSKNA
                     LKALQHAKITLNFKLNLYAVGQSTAQYAKNLGFKKIKIPSKAYGKDLFLEFKEELKMQ
                     KCLYLRAKNIVSTLNLDLKNVGVDLDEMIVYENVFKKGDKKLIYPAIFIFTSPLSVAN
                     FLKFYSLKEEDKVVVIGQSTAKKLLNFKNLYICENQSLLDCVKLAKTLV"
     gene            complement(17200..17652)
                     /locus_tag="RJ259_000612"
     CDS             complement(17200..17652)
                     /locus_tag="RJ259_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366350.1"
                     /translation="MKKAYVLIWTIFLILLISLWMSLTLNISSYTPKIIQDSYYYLQA
                     QILSHNATQFSKYFLYQAKQENKECLDNIYFNYTKALIKIKYFYPIAQCVNFKFSNFN
                     PDANLSKDGVIIAHISIALNRDKNVNDEILLTKSIIICPKENFWNLKN"
     gene            complement(17649..18311)
                     /locus_tag="RJ259_000613"
     CDS             complement(17649..18311)
                     /locus_tag="RJ259_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366351.1"
                     /translation="MSKAFTLFELIISLILFTFITSLLSKPLMDFYHLNFTALHTNNL
                     ITQAHLNLLKIEKLIQNCINITFSQNTLKCLLKDELISLKDNKLYLINSALILENNHT
                     LYSPHSDFKTQLQNRKDLYNDNEHISYAYKINKIEKISILENGISANFTGSFIPLQAQ
                     LVIKLQNEELIYEIKPKFNEQLNQQGLISKNISSFNLQNNKLKICLKRQTKHCLEKRI
                     LL"
     gene            complement(18308..18610)
                     /locus_tag="RJ259_000614"
     CDS             complement(18308..18610)
                     /locus_tag="RJ259_000614"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HDV7366352.1"
                     /translation="MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERL
                     YKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDGIFQFQKLYFQDQNYSVYFKE"
     gene            complement(18607..19338)
                     /locus_tag="RJ259_000615"
     CDS             complement(18607..19338)
                     /locus_tag="RJ259_000615"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HDV7366353.1"
                     /translation="MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKT
                     LLYKDFNIEGKDVILAFKPYALENIAQMLKGQARILISVLANVDFEKLQTIKAQNYVR
                     IIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
                     FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTV
                     KGIKILEQKGIRGSFFEAINASSAK"
     gene            complement(19338..19727)
                     /gene="fliW"
                     /locus_tag="RJ259_000616"
     CDS             complement(19338..19727)
                     /gene="fliW"
                     /locus_tag="RJ259_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HDV7366354.1"
                     /translation="MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSFVLIN
                     PYLIRPDYEFDIPTYYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNN
                     TMVQVILDTVNYPDFFQADQIANYIKK"
BASE COUNT         7196 a         2289 c         3533 g         6766 t
ORIGIN      
        1 aatttttcca atctttgctt aaaagctttt tagggagtat aactatattc tctttgccat
       61 ttgtagcatg ataaacacta accccatatt tacttgcata aaatttcatt aagagttgct
      121 ggagtttgta ttcgctacta ttattaaacc aagcattgtt gcttagggct ataataattt
      181 gtgaattttg atagttttgt tctttggtag cttcataaca aattgcattt gtgataattt
      241 gattatctaa tttatatttg ctttgtatag gacctttgga aaattcttca atatttttga
      301 gaaaatattt ttttgttaag tctttaaaaa atggaatttc ttcaccaaag ggaactaaaa
      361 aatgcttatt taaaatatag acattgcctt ttttaaagat ataagtgcta ttgtaagtat
      421 gctctttttc aacatgaaat gctcctgtaa taatggtgat tttataagat aattctttaa
      481 gcataagctc atatttggta ttttttaaat caaaagcaaa agcggtttca ggcaagatta
      541 caagttcttt tttttcattt atagcttgaa gtatatcttg aattaagata tcagaatttg
      601 attttaaatt ttcttgtaaa aatttttgat cttgagagat attagtattg atgagtttgt
      661 agtttaaatt aagagtttga gcttgttttt cattatattg aaatccacta aagaataaaa
      721 taagaacaat tgctatttta taatatcttg atatataacc ctcatagatg aaatatgcta
      781 ttaaaaatat gcaaataatg ccacgataac ttgggtcaaa aaaaccataa actgtaaaaa
      841 tcccccaatt aaaccaatca aatcctaaag gatggataaa acttatgcaa aaaattccac
      901 aaagccttaa aaaatcaaat tttaataaat aacataatct aaaaagtaac ccataaataa
      961 aaccaatgat aattggtata attggtacta aatagtttag attaaaataa attgaagata
     1021 aaccaatcca ccaaaaccaa agaatcccta caaaaaaacc tatccaaaaa tattgtttag
     1081 aagttttact ttttagaagt aaaactaacc cccaaatagc taaaaatgga ctaatggttt
     1141 gtgtaaaaat attttcaaaa aatgatagat aaatagaatt tgaaagtaaa attgcaataa
     1201 aaaagacttt tattatttta aaaatgatag aattagtgtt taattttttt ggaataaagg
     1261 aaaaatatgg cagaaaattc aattttaact tcattgttac ctcttgtagt gttatttgca
     1321 attttttatt tcttggtgat cagaccgcaa caaaaacaag caaaagcaca taaacaaatg
     1381 cttgagtctt tgcaaaaagg agataaaatc atcactaatg gcggacttat ttgtgaagtc
     1441 gtaaaaccag aggaggattt tatcaaagtt aagcttaatg aagacaatgt tactgcaaaa
     1501 atttcaagag aatttatagc aaagaaaatt gatgcgtaat tctaaaatca attatcgctt
     1561 gattattttt atagcggtat ttatttttgg agtggctttt tcactccctt cttttttgca
     1621 gtcagaacgt ggtgcgaaga ttaatttagg gcttgatttg caaggtgggc tttatatgct
     1681 cttaggtgta gataatgaag aagctgtaaa atctaaaata aaatcaattg catcttcatt
     1741 gagttattct tttaataaag aaaatatttt aaatgatggc ttaaataccc atgatgatat
     1801 tttagaattt actttgcttg ataatgcaga tattgcaaaa gttgaaaatt tgcttaaaga
     1861 aataaaagga attaatatac aaagtgaaaa tatgcactat aaaatttctt ttacctcaaa
     1921 agaagtaaaa aatatagaaa attttgcact tttgcaagca gttgaaacca taagaaatag
     1981 gcttgatcaa tttggtttag cagagccaac agttgctaaa caaggtgatg ataagatttt
     2041 ggttgaactt gcagggatta aaaccaaaga agatgaacta agagcaaaag aacgcatcac
     2101 aaaagcagca catttgcaac ttatggaagt tgatgattct aaaatgggtc aagcttctac
     2161 aatgagcgat gctgaggctg cgagttatgg actgatttta gtgcctgatt ctagaaatcc
     2221 aaatttaaaa tataccttaa aaagtatacc tattttagat ggatctatgc ttactgatgc
     2281 tagagtagga cttagcgata agagtaatta tcctgtgatt aattttactt taaatgccga
     2341 gggttctaaa aaatttgctg attatacagg agcaaatgtt ggaaagcgtc ttgctattgt
     2401 acttgataat aaagtatatt ctgctccatc tatcaatgaa cgcataggcg gaggtagtgg
     2461 gcaaatcagt ggagctttta ctcaagaaga agcacgcgat gtggcggtag ctttaagaag
     2521 tggagctttg cttgcgcctg taaaattact tgaacaaaga agcataggac catctttagg
     2581 tgctgatagt attaaaatga gtatgatagc cttaatcggt gcatcagttt ttattgtagt
     2641 atttatgatg atgtattacg gtgtggcagg aatttttgca aatattgcaa tgctagttaa
     2701 tgttttggta gtagttgccg ttatggctat gtttggagca actttaactt taccagggat
     2761 ggcaggactt gttttaactg tgggtatggc agtagatgca aatgtgatta tcaatgagcg
     2821 tatacgagaa ctcttgcgag atggagtaaa tataagagtt agtatagaac aaggttataa
     2881 aaatgctatg agtgcgatta tagattcaaa tatcacttct ttagttactt cggtagcgct
     2941 ttatgcctat ggaacaggag cagttaaagg ttttgctgtg actttgggaa ttggtatcgt
     3001 tgtttctatg attacagcta ttttaggaac tcatggaatg tttgattatt ttatgcaacg
     3061 catagaaaaa aataataata caagattttg gtttggttat aggagaagat aatgcagttt
     3121 tttagcgaaa agaaaattta tgattttatg agaatgcgtt ttgctgctat ttccctttct
     3181 tttattttgt tttttggttc tatttattta ctttgggata ggggtttgca atatggcatt
     3241 gattttagcg gaggaacttt agttcagctt aaatatgaaa atgcagctcc tataacgcaa
     3301 attcgagaaa ttttggaaaa tcaaggaact tttcaaaatt tatctgtaac tgagtttgga
     3361 agcaatgaag aagtaactat acgcttttta ggaagtaatg ataatgtaag caatgatata
     3421 ggtgagcata taagcactct tttaaaggat acgggaaaat ttgaagtgcg tcgtgctgat
     3481 gtggtaggtc caaaagtagg tgatgaactt agaaataaag gacttatggc tatagctgta
     3541 tctttgatag caattttaat ttatatagcg ttgcgttttg agtggcgttt tgctcttgcg
     3601 gctataatca gtgaaattca tgatgttgtg attactttag gagcaatttc tttatttaaa
     3661 attgatgtca atctagatac tttggctgct gttttaactg tgcttggata ctctttgaat
     3721 gatacaatta ttatttttga tagaatcaga gaaggtatta aaacaagtaa aaaaaccgaa
     3781 cttgcaccta ttattaatga aagtgtttca gcaactttat caagaacggt tttaacttca
     3841 gggttgactt tagcaaccgt tgtgatactt tatttctttg gcggggaaat gatacaagga
     3901 ttttctttgg ctttaattgt aggtattata gcgggaactt taagctctat ttttgttgca
     3961 agtccgacat tattatggtt taaatttagt gtgcttgagt ttagaaataa agaaattgaa
     4021 aaagcaaaaa gaaaacaaga taaagaacgc aatcgtgcaa tgtatgaaaa aggaactgtg
     4081 taaggagaat ttatggctta tgaagcaagt ttaatagaaa aaaaatggca aaaaatttgg
     4141 gatgaaaatg aatattttga gccaaaagat gacttaaatt tgcctaaaaa atatatttta
     4201 tcgatgtttc cttatcctag cggacgcatt cacatggggc atgtaagaaa ttatactata
     4261 ggtgatgctt tagcaagata ttatcgcaag ataggtttta atgttttaca tcctataggt
     4321 tttgatagtt ttggcatgcc tgctgaaaat gcagctatta aacataaaat tcatcctaag
     4381 tcatggactt atgaaaatat agcttatatg aaaaaagaac ttttttcttt aggtttttct
     4441 ttttctaaaa aaagaatgct tgctacttca gatccacttt atacaaaatt tgagcaagaa
     4501 ttttttatta agatgtttga aaaaggtttg atttacacta aagaagcaaa tgtaaattgg
     4561 tgtgaacaag atcaaacggt tttggctaat gagcaagttg aagacggaaa atgttggcgt
     4621 tgtggtcatg aagtggtgca gaaaaaaatg ccaggttatt atgtaaaaat cactgcttat
     4681 gctgaggaac ttttaaaaga tttagaagaa ttaaaagata aatggcctaa tcaagtttta
     4741 actatgcaag aaaattggat tggtaaaagc gaaggtttgg aattttcttt aaatttagac
     4801 gaagaaagta agcaaaaaac caaagaaagt tctttagaag tttttactac aagagcagat
     4861 acaatttatg gagtttcgta tatcgcttta gctccagaac ataagattgt tcaaaatttg
     4921 ctttcacaaa atttattaaa tcaagatgta ttaaataaaa tcaaagttat tcaaaatcaa
     4981 agcccaagag aaagacaaag ttctgaaaaa gaaggttatt ttttaggaat ttatgccatt
     5041 catcctttaa gcggagaaaa aattccttta tgggtggcta attttgtctt ggctgattat
     5101 ggtagtggag cggttatggc tgttccagct catgatgaaa gagattttga atttgcaaca
     5161 aaatataatc ttgccatcaa acaagttatt caaactcaag aaaatttacc ttatatgcaa
     5221 aaattaggaa aattaattaa tagtcaagaa tttgataatc ttgattgtaa tgaagcaaga
     5281 ttaaaaatca tttctcagtt tgaagctaaa aatataggaa aaagggttgt aaattttaaa
     5341 attcgtgatt ggggtgtttc gcgtcaaaga tattggggtg cgcctattcc tatgattaaa
     5401 tgtcaaagtt gtggtatagt acctcaaaaa ctagaaaatt tacctattac tctgcccgaa
     5461 gatgtgcaaa ttacaggtga gggtaatcca cttgataaac atccaacttg gaaaaattgt
     5521 atctgtccaa aatgtggtaa agaggctcaa aaagaaagcg atactttaga tacttttttt
     5581 gaaagttctt ggtattttgc acgttttgca agtgatgaga aaacttggca ggaaaaagct
     5641 ttagatgaaa aaagtgtaaa gtattggatg agtgtggatc aatatatagg tggtattgaa
     5701 catgcaatct tgcatttact ttatgcgaga tttttccaaa aagctttaag agatttgggt
     5761 tatttaacac aaaatgaacc ttttgataga cttttaactc agggtatggt gttaaaagat
     5821 ggtgctaaaa tgtcaaaatc aaaaggcaat gttgtagatc ctgatgagat tatagaaaaa
     5881 tacggtgctg ataccgcaag actttttata ctttttgctg cgcctccggc taaagagctt
     5941 gaatggaatg atgatgcggt tgaaggggct tatagattta tttgcaaact ctatgatagg
     6001 gcgcaaaatg ttaaaaaagg tgagcttgta gaattaaaac aagaaaattt aaacaaagaa
     6061 gaaaaatatg caagattaaa ggtatatgaa gctttgaaaa aatcttttga agtttatcat
     6121 caaagttttg cttttaatac tttaattgca gcttgtatgg aagctttaaa tgctttagca
     6181 ctttgtaaaa atgaagcttt ggagcaagag gctttttata ttattttaaa tattttagag
     6241 cctattattc ctcatgtttg ttttgagctt agcgaggagc tttttaaatg taaaaatttc
     6301 aaaaaattag aacttaaaga agaggttttt gtaaaagata ctttaaattt agctgtaagt
     6361 attaatggta aaaaaagggc tgaatttgaa atttcaagta gtgcgagcaa agaagaaatt
     6421 ttagcttttg caaaagaaaa tactgctaaa tggcttgaag gtaagagtat agttaaagaa
     6481 atttatgtgg aaggaaagct agttaatcta gtgattaaat gaaaaagatt ttaatttttt
     6541 gtataggttt atttttaggt gcttgtggat atattcctac atcaaaaatc gctaataata
     6601 ttttcgatga gaaggtttat gttaatgttg aattaagtca acaagaccca aaaaatagta
     6661 tctatgttgc cgatacttta aaagaaatgg taatttcaaa attagggcgt aaacttgctt
     6721 taaaacacga ggcagatgat gtaattaatg ttaaaatgaa taatttagaa tttattcctt
     6781 tagcttatga taaaaatggc tatgttatta gttataaagc taaattaaat ttagatttta
     6841 atgttgtctt taaagatggt tcaagtcagg cttttagtac aagtggaagt tataattttg
     6901 aaatttctcc aaatagtatt attagtgatt ctgcaaggta tgaggctatt cgagcagctt
     6961 caagcgaggc atttgatgag tttatttccg taattgctat taaagggcaa aaacgtgatt
     7021 ccaaatacta atgaaatagc aaagcaaact ttaattgcat taaaagaaag aaaactaaaa
     7081 ccaactcctg aaaattatac ggaaattttt gaagaattat ctttaaaata tggtatcaca
     7141 agctcaaata aagctaaact tgacaaatac aaaaccttgc ttttgccgat ttatcaacaa
     7201 gaattaaatt ctaaaactat aagaagttta gaagaactaa ttagtttttt aatttctgtt
     7261 ttaaatagac aaagcggaaa acaatttagt gaattttttg attttttata taccatatct
     7321 aaaactttgc aaataagtaa ggataaaaag ataagagatt tggctaaggt gacttcgatt
     7381 agaatttcta aaactatgga tagtgaaagt atttacttgc ttactaaaaa atggaaagag
     7441 cttgaaagaa attatgatga aaatgactta gaagaacaag ctcgtaaata tggcattagt
     7501 aaatatgaag attatgatag cgtgattaaa aaactcttag tcaagcttga agagcgtagt
     7561 tatgagcact ttagtgaatt attatgcttg ggtttaaatc cttcattggt agaagattta
     7621 aaaattcaag gttttataca aaatttaaca caaaagcctt ttgtaatagg cgaagaaaat
     7681 tttaaaaatg aactaatgga atttataaat catcgcataa tggttgataa tatgtatgtc
     7741 caaaaaaatt taaatttttt taacgataat ctaaaaaaaa tctatgaatt gcttgtctta
     7801 cttaataaat cgaatgaaaa aaatatggat tttatcaata ccttaaaacc agatgaaaat
     7861 ggggaagtaa aacttagttt tgaggattta aaactaaaat ttaaacaact tggagaaaaa
     7921 attacatctt taaataatca aattgaattc acgcaaagct tagaagagag agaggcttgg
     7981 agtgttctta aagagcttga taaaatggat gaaaatttta ataagtataa agttaattat
     8041 tctttagctt tattttctat agtaaattac cgtttcatta tggaaaaata tggtatggga
     8101 agtttgaatg aaatttttgt tcgatttaaa aaaattttaa aagattcttg tagtgaattt
     8161 gatgaactgt ggatgataga tgaaaagagt tatttgattg tttcgccagg aaaaagcaaa
     8221 gatgaaatta cacagcttgt aaatacaaat cttaaaacta tagaaaattt tagatttatt
     8281 tataagcaag atattataac tcctaaaatt cacgtggctt atcttgataa gcaaagtaag
     8341 ccaagtatta atattttaga tgagttaata aagcaaattg cagcggttaa tgaacaacat
     8401 aatgaaagtt gagaattttt tagctcaaaa aagtataaat tacgataaaa ttgatcgttt
     8461 tttgatgttt agaatgtatg aaaaatataa gaaatatttt aaaaatattc ctataatcca
     8521 acttataggc acaaatggta aaggtagcac gggtagatat ttaacccaac ttttagaaaa
     8581 tttaaattat aaaatagggc attatactag cccgcacatt ttcagtttta atgaaagatt
     8641 ttatcttgat ggtaagattg cgaatgatga agaattagaa caagctcata taagacttga
     8701 agaaattttt aaacaagact tgcaaaaatt aagttatttc gaatatgcta cttttttagc
     8761 tatgatttta tttcaaaaat gcgatttcat tgttttagaa gcaggagtgg gtggagaata
     8821 tgatgctact tctatttttg aaagaagaat gagtattttt acaagaattg gatttgacca
     8881 tattcaaatt ttgggcaatt ctttagaaga tattgcaaga accaagctta aagttatggc
     8941 acctatagca cttataagtg atgagcaaga gcaaaatgtt ttaaatttag caaaaaaaat
     9001 tgctttttta aaaaaagcta atttgcaagt ttcctcctta aatccttttt tgaaagaaaa
     9061 atttgagatt tattgtaaaa agtttgtttt accttatttt ttaaagcata atttaaagct
     9121 tgcattaaag gcttgtgaaa ttttaacttc gcaagaaaaa accttagaag ctttaaaaaa
     9181 gttacaagag ttaaatttac aaggaagatg ccaagaaatt tctccaaatt tttttgttga
     9241 tgtgggtcat aatcccatgg ctgctaaggc catgcttgat aaatttcaag gagaaaaaat
     9301 aaatcttatt tataatgctt atttggataa ggatattttt caaattttaa atacattaaa
     9361 gcctattatt gatacaatac aaatatataa atataaaagt gcagaacgaa agctggccga
     9421 tgatgaaatt tatagtattg catcaaagct aggcatgcaa tgtaaagaat ttgtaaaatt
     9481 agaagagaat aaaaaaaatc tagtttttgg ttcttttatg ctggtagaaa attttttaaa
     9541 ggagtggtgt ggtaaaaaat aaattcacta ttaccattac agatattaac ggttcaagac
     9601 atttttattt aaatcaaata atcaaaaaaa tagtttttta tattattgct tttattgttt
     9661 tatttttagt ttttagtggt ttttatatca aatatctcga tagcaaactt agtgatatca
     9721 gtgaaaagcg tgaggagctt ttgaaaaaaa gcaaagaatt ggaattatct aattcgcaaa
     9781 tgcaaaaaag catagaagaa aaaactcagc agtatgcagc tatagaagat aaaatagctt
     9841 cttttgaaga ggctttgggc ttagaagcag aaaataatct tacaattagt gcaagacttg
     9901 ataatcttca gcttaccaat gagcagcaac ttggaatttt ggggcaaatt cctaatggat
     9961 ggcctattga aaataaaggc attacaggaa attttggctg gagagagcat ccgcttttaa
    10021 aaagaaggga atttcatcct ggtattgatt taagagcaga aattggtact cctatttatg
    10081 caccagcaag tggagtagtg gaattttcag gttatagtga taatggctat ggctataatg
    10141 taattttatt gcataatttt ggttttaaaa cagtatttgc tcatatgatg cgcaaagaag
    10201 tggtcaaagc aggtcaattt gttaataaag ggcagttgat aggttatagt ggcaatacag
    10261 gtctttctac ggggccgcat ttgcactatg aggtaaggtt tattaataaa actttagaac
    10321 ctttgtattt tttaaatttg caaagaaaaa atatgaatga tttttttaat caagaaagga
    10381 gagttccatg gcaatcttta ataaaggcgg tatcagccca acatccagct ctagctcaga
    10441 aacaacagta atttcttcag gtgcgagaat tgagggtaaa ttttattttg cttctatgct
    10501 tcatgttgat ggagagttaa gtggtattat tcattctgaa agcattgtgg ttatcggaaa
    10561 aaatggaaat ttaaaaggtg aattacaagc agataaaatt gtagtaaatg ggtgttttga
    10621 agggcaactt gaggctaata gtttagaaat tttagcgggc ggagttgtta atggtgatat
    10681 ttcaacgcaa aaaatttcta tagaaaatgg cggtcgcttt aatggaacta gtaaaattaa
    10741 agaagatact atcaaactta ttgaaaataa caacgaagaa taatgcaagc ttcattttat
    10801 gaatacctac aaaatccaaa aatttgtgaa cttttgcttt gtaaagatga aaaacaagca
    10861 gatttacttg ctcaagtttc acgatttaag ggtttaaaaa cctttgtttt acctgatttt
    10921 agagcgcagt ttggagatga tttaagggct ttttccaaag aactttttga tctttgcaag
    10981 attttaaatg cttatcataa agaagaagaa aaaaaaatcc ttatttctcc tttaaatact
    11041 gttttaaaaa aacttccttc aaaaaaacat ttacaaaatt atcatatcga taaaaaacaa
    11101 aattttgatt tgaaatgttt tgaagatgaa atttcaagat tgggatacga atttgtagat
    11161 atagttcagg ataaaggtga aatttcaatt cgtgcggata ttattgatat tttttgtatc
    11221 aatgaagaaa atcctattag aattttactt tttggcgaag agattgaaag cataagatat
    11281 tttgatttgc aaagtcaaaa gtctattcct aatgaactag aatattttga aatttgtcct
    11341 tttttaaaat attttgacaa agaaaattat gaaattttta aggacaaatt agaagatttt
    11401 caaagcgata ctttaataca tgatatcaat tctttaggat tttggtgtat tgatgatttt
    11461 tttgattatt tagaacttga ttttttagct tgtgaaaagt ttgatattaa tgaatatgaa
    11521 aaagatataa gttttgtgaa tgcaaaaatt ttacctcaag ctaaaaaatt taaagaattg
    11581 caaagttctt acaataaaga tttttttgaa tttcataaaa ataaaaaaat cacactttta
    11641 gctaaaaatg aagctttgtt taaagctttg gagcttgaag atactcaaaa tatccatttt
    11701 gtaaaaagtg atttaaggct taatcttatt agtcctgaag agctaatcat ttctttaaat
    11761 caaaaagaaa aacaaaaaac aagaaaaaaa gctagtttga ttatagatga gcttaaaaat
    11821 ggggattata tagtgcacga agattatgga gtgggcaaat ttttaggtct tgagatgata
    11881 gtgataagcg gagcaaaaaa agagtttgtt gctatagagt atcaaaattc tgataagctt
    11941 ttattaccag tggaaaatct ttatttgatt gataaatatt tgggtgtgag tggatctatt
    12001 ccaagcttag ataaactagg taaaacaagc tttattaaac ttaaagaaaa attaaagact
    12061 aaacttttag ccatagcttc taaaattgtt attatggcgg ctaaaagatc tttggtgcaa
    12121 gcaaaaaaaa ttacagtgga tttaaataga caagctgatt ttataactag tgcaggtttt
    12181 atttatacaa gcgatcaaga gaaagcttgt catgaaattt tgcaagattt tcaaagtgga
    12241 aaagttatgg ataggctttt aagcggtgat gtgggttttg gaaaaacaga agttgccatg
    12301 aatgctattt atccagtggt taaaagtgga ttttgcgcat ttttatttgc gcctacaact
    12361 ttgctttctc atcagcatta taaaacctta aaaaagcgtt ttgatccttt tgatataaag
    12421 gtttttaaac tggatcgctt tacaagtagt gcagaaaaaa aacaagtttt acaaaattta
    12481 aaagaaaata aagcttgtgt agttgtagga actcatgcgc ttttaagtgt agaatgtgaa
    12541 aatttagctc ttgttattat tgatgaagag cataaatttg gagtgaagca aaaagaaaag
    12601 cttaaagaaa tcactcaaaa ttcacatatt ttatccatgt cagcaacccc tataccaaga
    12661 agcttaaatc aagctttaag ttctataaaa tcttatagtg ttttacaaac tccaccagaa
    12721 gatagaatgg atgtaagaac ttttgtcaaa gaaaatgatg acgcactttt aaaagaagct
    12781 atagcaagag agttaagacg tggtgggcaa attttttata ttcataatca tattgcaagt
    12841 atagagcaat gtaaaaagca tctattagaa cttttttcta ctttgcgtat tttgatttta
    12901 cattctaaaa tcgatgccaa gatgcaagaa gaagaaatgt tgaaatttga aaacaaagaa
    12961 tatgatttgc ttttaagtac ctctatcgta gaaagtggga ttgatttacc aaatgcaaat
    13021 actatcatag tagaaaaaag cgatcgtttt ggcatggctg atttgcatca attgcgtggg
    13081 cgtgtaggaa gaagtgataa gcaaggttat tgttattttt taattgaaga taaaaatgct
    13141 atcacaaaag atgctttaaa gcgtctagtt tccttagaaa gtaattcttt tttaggcgca
    13201 ggttctattt tggcttatca tgatcttgaa attcgtggcg gtggaaattt attaggcgta
    13261 gatcaaagtg gacatattga gcaaattgga tatagtttat atcttaaaat gttagaagat
    13321 gaacttaatg ctttaagtaa aaatgaagtg gatcaaaaag aaaataaact tgatttaaaa
    13381 ctcaatgtta atgccttttt aaacagcgaa cttatcagcg aagatcgctt aagattagaa
    13441 ctttatagaa gacttagcaa gtgtgagcaa gttcatgagg tttatgagat cgaaggtgaa
    13501 attgaagatc gctttggaaa acttgacatt tatactaagc aatttttatc tttgattact
    13561 attaaaattt tagctttaaa taaatttaaa agcattagta actatgagca aaatattcaa
    13621 tttactgctt taaatgatga aaaagaactc atcaaggcaa aaagcaaaga tgatgatgat
    13681 attttagagg caattttaac gcatttaaga aaggcttaaa atggattgga ataaaactta
    13741 tgcagcaatt tatagagcaa gaaaagatta tttaaagcct atttttgaaa tcgatcctat
    13801 tgctttaaaa gatttagtag gtatggaaag tcaaaaaaaa gcactttatg aaaatacttt
    13861 aaatttcatt caagataagg gagcaaatca cgcactttta tggggatcta agggcactgg
    13921 aaaatcaagt ttaattaaag ctatatttaa tgaatttaaa gaacagggct taagacttgt
    13981 cgaattaaat aaagaagatt tatttgcctt agcagatatc atcgatgaaa tcagattaga
    14041 aaattttaaa tttatacttt tttgtgatga tttttctttt gaaaagggag atgatagtta
    14101 taaattttta aaacctttac ttgagggaag catagaaaaa gccccaaata atgtaattat
    14161 ttatgcgagt tcaaatcgta ggcatttatt aagtgaaagc attactgata atcttgatac
    14221 gcaaatcaca catacagaac ttcatttaag cgatgctgct gaagaaagat taagtttgag
    14281 tgatagattt ggtttgtggt taagttttta tcagggaaat ttagaagagt atttaaagat
    14341 gatagatttt tattttaaag attattcttg tgataaagag cttttgcacg ctaaagctaa
    14401 agaatttgct actctaagag caagtagaag tggtcgtacc gcaaagcaat tttatttagc
    14461 ttttaaggag aattttaaat gactggagca caaattttta ccaagctttt aaatttggat
    14521 ttaaattatc atgattttga ttggcttgaa aatcaaggat tgagtgaatt tgagctttta
    14581 atttctgtcg ttttaactca aaatacaaat tggaaaaatg tcttaaaagc tttagaaaat
    14641 ttgaaaaaag aaaatattgc aagcttagaa caaatcaata ctttatccaa tttagaactt
    14701 gcaactttaa ttaagcctag cggattttat aataccaaaa ctaagcgttt aaaaggtttg
    14761 gtagaaagta tcataaacac ttatgaaaat ttagaaaatt ttaaaacaaa tgcaagcaga
    14821 gaatggcttt taaatatcaa aggtttaggt tttgaaagcg ttgatagtat tttaaactat
    14881 ctttgcaaaa gagagatttt ggttgtagat aattatagtt tgcgtttggc tttttactta
    14941 ggttatgagt ttgaaaatta tgaagaatta agagaatttt ttcaaagtga catagagagt
    15001 gagcaagaaa atttgtataa aattttagga aaaaaatgcg aactttacga actttatcaa
    15061 atttttcatg ctttgattgt agcttttgca aaacagagtt ttaaaggaca aaaattaagc
    15121 cctaagggtg aagaatggat caaaatttta aaggaagatt tatgaaagca aaaggaagtg
    15181 aacttatacc tgttttaact atagcaggga gtgattgtag tggtggagca gggatacaag
    15241 ccgatcttaa aacctttagt gcacacaatc tttttggtat gagtgtgatt ttaagtgtgg
    15301 tagctgaaaa taccgcaagg gtgatttctg tacacgatat acctactcaa agcgtggatg
    15361 aacaaatgct tgccgtgttt gaagatatag tgccaaaggc aactaaaatc ggaatgatag
    15421 gttcttgtga attaatgagc tgtgtagcta aaaatttaag cgagtttaaa cctcaaaatg
    15481 tagttattga tcctgtaatg tttgccaaaa atggccatgc tttaatgccg caagaaaatt
    15541 gtgatttttt caaacaaact ataataaaat ttgcagacat tcttactcct aatattcctg
    15601 aagcagagtt tttatgtggt tttaagatcg ctaatgaaga gcagatgata aaagcagcta
    15661 agcatttatg cagcttgggg actaaggcag ttttacttaa aggcggacat agtgaagcaa
    15721 atgccaatga tgtgctttat aatggaaaag aaatttatat tttaaaaggc gaacgcatag
    15781 aaactaaaaa tactcacggt acaggttgta cgctttcttc ggctattgct agtaatttag
    15841 ctaaaggcaa ggatttattt cacgctgtta gtgaagctaa agagtatgta agaaatgcga
    15901 tttattattc acttaatctt ggaaaaggtt gtggtcctac aaatcatttt ttcaagtttc
    15961 tagatgaaaa ataaattaga tcttagcctt tatttggttg ctactaaggg aaataaaagc
    16021 gaggagtgtt ttttaaatac tttagaaaat gctataaaag gcggagtaag tatcatacaa
    16081 cttcgtgaaa aagagcttaa tgcaagagaa ttttataaac taggcttaaa ggtgcaaaaa
    16141 ctttgcaagt cttataaaat accttttttg attaacgata gggtggatat agctttagcc
    16201 ttagatgctg atggggtgca tttaggacag gaagatttag aagcaaaatt agctagaaag
    16261 cttttaggag atgaaaaaat cataggctta agtcttaaaa agttagaaca acttgagttt
    16321 atacaaggag taaattatct aggttgtgga gctattaagg caacgcctac taaagaaagt
    16381 tcgcttttaa gccttgagct tttaagtcaa atttgtgata aaagccctat aggggttgta
    16441 gccataggtg ggattgacaa agaagcactt gttgagttaa agggtataaa tttaagcggt
    16501 gtggctgtgg ttagggcgat catggatgct aaagatgctt ttttggcagc taaagagcta
    16561 aagcgtaaaa tctatgaaaa tttatctctt aaatgaaact ccttttgaag gggtggaaaa
    16621 tcttatttta aatgagattg ttttttatga ttttagtgtg gatttgagtt tgtatgatgc
    16681 tttaatctgc acttcaaaaa atgctttaaa agctttacaa catgcaaaaa tcactttaaa
    16741 tttcaaactc aatttatacg ctgtgggaca aagtacagct caatacgcta aaaatttagg
    16801 ttttaaaaag attaaaattc catcaaaggc ttatggaaaa gatctttttc ttgaatttaa
    16861 agaggagtta aaaatgcaaa aatgtttgta tctaagggct aaaaatattg tttcaacttt
    16921 aaatttggat cttaaaaatg taggtgtgga tttagatgaa atgattgttt atgaaaatgt
    16981 ttttaaaaaa ggcgacaaaa agcttatcta tcctgctatt tttatattca cctctccttt
    17041 aagtgtagca aattttttaa aattttatag cttaaaagaa gaagataagg ttgtagttat
    17101 agggcaaagc acagcaaaga agcttttaaa ttttaaaaat ctttatatat gcgagaatca
    17161 aagtctttta gactgtgtta agctcgctaa gactttggtt taatttttta aattccaaaa
    17221 attttctttg ggacaaataa taatgctttt tgtgagtaaa atttcatcat tgacgttttt
    17281 atcacgattt aaagcaatac taatgtgggc tataataaca ccatctttgc ttaaatttgc
    17341 atcgggattg aagttggaaa atttaaaatt aacacattgt gcaataggat aaaaatattt
    17401 tattttaatc aaagcttttg tgtaattaaa atatatattg tctaaacatt ctttattttc
    17461 ttgctttgct tgatataaaa aatatttaga aaattgtgtt gcattgtgac ttaaaatttg
    17521 agcttgaagg tagtaataac tatcttggat tatttttgga gtatagctgg atatgtttaa
    17581 ggtcaagctc atccatagac ttattagtag tattaaaaaa attgtccaaa ttaaaacata
    17641 agcttttttc acagtaaaat tcttttttca aggcaatgtt ttgtttgtct ttttaggcaa
    17701 atttttaatt tattgttttg caggttaaat gagcttatgt ttttagaaat taatccttgt
    17761 tggtttaatt gttcattaaa ttttggcttt atttcatata taagttcttc attttgcaat
    17821 ttgataacta attgagcttg caaaggaata aaactacctg taaaatttgc agatatacca
    17881 ttttccaaga tagatatttt ttcaatctta ttaattttat aagcatagct aatatgttca
    17941 ttgtcgttat ataaatcttt tctattttgg agttgtgttt taaaatcaga atgaggtgaa
    18001 taaagtgtat gattattttc taaaataaga gcagaattaa taagataaag tttattatct
    18061 tttaggctaa ttaactcatc ctttaaaaga cattttaatg tattctgtga aaatgtaata
    18121 ttaatacaat tttgtattaa tttttctatt ttaagcaagt ttaaatgtgc ttgagtgata
    18181 agattgtttg tatgtaaagc agtaaaattt aaatgataaa aatccattaa aggttttgaa
    18241 agtaagctag ttataaaagt aaaaagtatt agtgatatta taagttcaaa aagtgtaaaa
    18301 gctttgctca ttctttaaaa taaacgctat aattttgatc ttgaaagtat aatttttgaa
    18361 attgaaatat accatcatta acaaactgtt cttgtaaaac tataggtttt aaggctgaag
    18421 tttgaagtat gatggtttta aaaataggct tttcatataa ttcttcttga agtttataga
    18481 gtctttcaaa aatatttaaa ttttcatagt ttttgtaaag ttgaatatag taataaaaaa
    18541 tgccaatgaa aattaaagat atgatcgtta tagcactaat gctttctata agtatgaaag
    18601 cctttttcat ttagcgctgc tagcatttat ggcttcaaaa aaacttccgc gaattccttt
    18661 ttgttcgagt atttttatgc cttttactgt aactccgcca ggggagcaaa tattttcttt
    18721 gataatagct ggatgttcat gttctagtaa agcactagag cttttaaata aagagcgcgt
    18781 aagattgaga ctaagttctt ttgacaaacc ttcataaact ccagcattag caatgctttc
    18841 tgctataagt gctaaaaaag caggagcgca gccgctaatc gccatagctg cattcatttg
    18901 tatttcatta tctaatttat aagccgagcc aaaagttttt aaaatgtcta aaatttcatt
    18961 ttcaaaatga gagtttttaa gtatatatgg tgtggttgaa gccttgtatt tagctgctgt
    19021 attgggtatt attctaacat aattttgagc tttgatggtt tgtagttttt caaaatcaac
    19081 attggctaaa acagagatta agatacgtgc ttgtcctttt agcatttgag caatattttc
    19141 taaagcataa ggtttaaatg ctaaaataac atctttacct tctatgttaa aatctttgta
    19201 aagtaaggtt ttaaagcctt ctttggcgag ggcttgaagt ttttctatac ttcttcctac
    19261 tatacaaatt tcataatcat cttttaaccc ataggctaag gctgttgcca tagatccatt
    19321 tgcaagtata tagagcatta ttttttaata taattagcaa tttgatcagc ttgaaaaaag
    19381 tcgggataat taactgtatc tagtatcact tgtaccatag tattattatc aagattaatg
    19441 actactggag ctagaaaatt cactgtcgat tcttcaatgc tttttgctat ggctactata
    19501 ttaaaaattt tcatattaga ttcaggtgtt aaagaaagaa gctcttgata ataagttggt
    19561 atatcaaatt cataatcagg tctaatcaaa taaggattaa ttaaaacaaa agaaaagtct
    19621 ttaccatcaa gacttttaag tcttacaaat acttcatcga tagttgaaaa ttccatattt
    19681 ttggtttctt caaaacctaa gatagggcat ttaacagcta gggtcatgtt ttctcctcaa
    19741 gttataatgt ttaatatttt aacataaaat aagcaataat catt
//
LOCUS       DAPIWJ010000022        19760 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.022, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000022 DAPIWJ010000000
VERSION     DAPIWJ010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19760)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19760)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19760
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.022"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            35..436
                     /locus_tag="RJ259_000617"
     CDS             35..436
                     /locus_tag="RJ259_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HDV7366355.1"
                     /translation="MTYNEKIISMNNDLLDHQHKELFEISKKLSLMNQRHVGTKELKI
                     VLRELLIMINRHFSDEEAFMREIEYPYINHHTRIHRKIILEIEEIIISEAKFVNIMTE
                     KLNLVVQDFIFKHTAKEDSKIVKYYEEKFKK"
     gene            614..1795
                     /locus_tag="RJ259_000618"
     CDS             614..1795
                     /locus_tag="RJ259_000618"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifS family cysteine desulfurase"
                     /protein_id="HDV7366356.1"
                     /translation="MKVYLDNNATTMLDPNAYELMLPFLKDMYGNPNSLHQYGSATHP
                     ALREALDKLYAGLGANDLDDIVVTSCATESINWVLKGVYFDHILDKERNEVIISSVEH
                     PAVTAAAYFLKSLGVKVIELPVNEEGVSTVEDLRKVISDKTALVSVMWANNETGMIFD
                     IKAMAELAHEFGALFHTDATQAVGKIKVNLTQVGVDFASFSAHKFHGPKGVGGLFIKK
                     GLKLTPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQ
                     ILALPDTTVVGKREHRVPNTILASIKGVEGEAMLWDLNKNGIAASTGSACASEALESN
                     PIMEAIGAEHDLAHTALRLSLSRFNTEEEIDYAAKQIKNATQRLRAISCTYAYNPNNY
                     K"
     gene            1805..2776
                     /locus_tag="RJ259_000619"
     CDS             1805..2776
                     /locus_tag="RJ259_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein
                     NifU"
                     /protein_id="HDV7366357.1"
                     /translation="MGKNSLIGGSIWDEYSQKVQDRMNNPQHMGEFSEEDAKARNAKL
                     IVADFGAESCGDAVRLFWLVDEKTDKIIDAKFKSFGCGTAIASSDTMVDLCIGKTVDE
                     AVKITNLDVEFAMRDNPETPAVPPQKMHCSVMAYDVIKQAAAHYKGISPEDFEDQIIV
                     CECARVSLGTIKEVIKLNDLHSVEEITQYTKAGAFCKSCIKPGGHEKRDYYLVDILAE
                     TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQK
                     AEGAAIDVYIRYLGACSGCSSGSGATLYAIETILQEELSPNIRVMPV"
     gene            complement(2799..4682)
                     /locus_tag="RJ259_000620"
     CDS             complement(2799..4682)
                     /locus_tag="RJ259_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HDV7366358.1"
                     /translation="MKKIIFSLCFFILHLGAQEFKFIDANISKEDEGIYALVEKYVDL
                     NNQIKEFKKNNDENSSTFNGILSEFEKDKKTILAKIPDMIVGQKINEEAVARFLKAKE
                     KLLDVQKKNINKPYIYTDATLNLVYFNIVESFYSSLFEVEKLFKNTASSEDLIATVDK
                     AMENLQNSSNVNLDSFKSKITNPEELEKITLKERYISNAVDSYSEILKYLRSNADLLE
                     SNYIFSLLELQVWIDRINEAIGVSFVNIGKIVISALVLVFFISLRRFFANIVYFFLVQ
                     LFYRNKNDVDDIKVIFIENIKKPVGFLLIVYAISLCLTIATYPAPLSVNLSNFFHIVY
                     AVLIAWLILRMLDGYGVVLVSKLAQKSGKKEVVNLIIKILYFVIIIIALLYILAQLGF
                     NISAIIASLGIGGLAVALAAKDIIANFFASILLLFDNSFNQGDWVEVSGIEGTVVETG
                     LRKTTIRTFDNCLVFLPNSTIMGANIKNWSKRRMGRHVRMYLGVGYDATPEKLEQCVK
                     DLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLVSINDLEGYKNACYVALSEFADSSI
                     NIELYFYIKEIGGKDFREARQSLMLEFMRIIEKNGLTFAFPSRSIYIENLPPLDLQAK
                     AIK"
     gene            complement(4679..5314)
                     /locus_tag="RJ259_000621"
     CDS             complement(4679..5314)
                     /locus_tag="RJ259_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HDV7366359.1"
                     /translation="MENLISGAIKFMQEDFKEHEELFESLKNKQNPHTLFIGCSDSRV
                     IPNLITNTGPGELFVIRNIANIVPPYRVGEDYLATTSAIEYALNSLHIKNIVVCGHSN
                     CGGCNALYYSDEELNKIPNVKKWLTMLDPIKKDVMIFARDDLAMRSWLTEKLNLVNSL
                     QNILTYPGVQEALDEGKIEVHAWYYIIETGEIYEYDFKAKIFTLIQDRKVQ"
     gene            5474..6169
                     /locus_tag="RJ259_000622"
     CDS             5474..6169
                     /locus_tag="RJ259_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HDV7366360.1"
                     /translation="MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGA
                     YVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKKREAPLNLVLLFGFTFCSGLTLT
                     PLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVMGKALFIVLIVIVAA
                     SLLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLF
                     VSLLNILRSFNSR"
     gene            6273..6644
                     /gene="secG"
                     /locus_tag="RJ259_000623"
     CDS             6273..6644
                     /gene="secG"
                     /locus_tag="RJ259_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HDV7366361.1"
                     /translation="MITLLIILQFIIVVVICIAVLLQKSSSIGLGAYSGSNESLFGAK
                     GPAGFLAKFTFVMGILLIANTIGLGYLYNKASKDSLAEKIKVENNNTTIPSAPIVPTT
                     PNTNSIAPSAPQLPSDVNSSK"
     gene            6654..7217
                     /gene="frr"
                     /locus_tag="RJ259_000624"
     CDS             6654..7217
                     /gene="frr"
                     /locus_tag="RJ259_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HDV7366362.1"
                     /translation="MIMLNEIFNKQKTQSEKSLEALKKDFTTLRTGKVNIHILDHITV
                     DYYGTQTPLNQVATVLASDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKL
                     FFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYD
                     EVQKLTDTYTTKIDEGVKSKESELLKV"
     gene            7220..7828
                     /gene="pyrE"
                     /locus_tag="RJ259_000625"
     CDS             7220..7828
                     /gene="pyrE"
                     /locus_tag="RJ259_000625"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HDV7366363.1"
                     /translation="MNLEQIYKDCGAYLEGHFLLSSGKHSQFYLQSAKVLEDPKLAAK
                     LCDELAKIIASYKIEFDSICSPALGGILAGYELARACSKRFIFTERVNKEMTLRRGFE
                     VKKGEKFIICEDIITTGGSALESAKIIESLGGIVVGFAALANRGFCAVENLKSPRKDN
                     AKLPENLPLFTLGNFEFEIYDETNCPLCKKGNKAIKPGSRGN"
     gene            7829..8239
                     /locus_tag="RJ259_000626"
     CDS             7829..8239
                     /locus_tag="RJ259_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HDV7366364.1"
                     /translation="MKTKAKISSRWLRFRALLIDIFLIYVPILYLFYFLLGSKEAFLN
                     NHFITTLCTFLFGLIQAIFLTKKAQSPGLKAYDLYLIDIKTGKKLSFLRILLRYVIFI
                     ISFGLLFGLFVSFVRKDRLNLHDILTQSCIATKA"
     gene            8253..9275
                     /locus_tag="RJ259_000627"
     CDS             8253..9275
                     /locus_tag="RJ259_000627"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDV7366365.1"
                     /translation="MQRKRIYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWD
                     LMEANTWFPKEVDTTKDALDYRCNLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPY
                     ITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSI
                     YEELAGDVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDE
                     ITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTD
                     DIIEEYIHYLVDQRLSAINLDKLYNAKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS
                     ISFDDF"
     gene            9262..10635
                     /locus_tag="RJ259_000628"
     CDS             9262..10635
                     /locus_tag="RJ259_000628"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HDV7366366.1"
                     /translation="MMTSKTSLALLCDFYEFTMSQGYFKNNKKDQICYFDIFFRKIPD
                     SGSFAIFAGLEDILDFVENLSFDAEDIEFLRKQGIFDTEFLDFLANFKFKGEIYAMRE
                     GEVIFPNEPLLCIKATTIEAQLLETFLLLSLNHQSLIATKTNRIVRAAKDSKILEFGS
                     RRAQGSEAALKGARAAFIGGCIGSACTLAGKIYNIPINGTMAHSWVQMFENELEAFKA
                     YVKIYPKNPVFLIDTYDCLNSGLKNAIKVFKEFGIQEGGVRIDSGNLLELSLKIRQEL
                     DQAGLQKCKIIVSNALDEWSIKKLKEQNAPIDIFGVGERLITASSDPIFSCVYKLAAL
                     EDQGIKPKIKISENNEKSTLPHFKKLFRVYDKNTQKILFDELYVFDENPNQDENLERK
                     ELLELVYKEKRLLKKSSLNTIQDYTKEQISKLDESFLDLDRFVKFEVKLSPKLQNITE
                     DLLKTRF"
     gene            complement(10604..11152)
                     /locus_tag="RJ259_000629"
     CDS             complement(10604..11152)
                     /locus_tag="RJ259_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HDV7366367.1"
                     /translation="MLIKFKNHSPKLGQNVFVAEGAKIIGEIEIGDESSIWFNCVLRA
                     DVNFIKIGKRTNIQDLSTVHVWHREFDEKGKLKDAGFPTIIGDDVTIGHNCVIHACVI
                     KNRVLIGMNAVIMDNALIEEDSIVGAGSVVTKGKKFPPRSLILGNPAKFVRELNDEEV
                     SFLKQSALNYVDFKNEFLKDLQ"
     gene            11241..11870
                     /locus_tag="RJ259_000630"
     CDS             11241..11870
                     /locus_tag="RJ259_000630"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HDV7366368.1"
                     /translation="MNAFEQKRCQNMAEEIAQKVFINEELFNAFCQIPREIFSPLKAH
                     AYRLDALPLANSQWISSPLTVAKMTMALDFKNADSILEIGCGSGYQAAILSKVIRRVF
                     TIERIENLAKKAAQTFRELELFNINVKFDDGQNGWKNYAPYDRILFSAYATQIPEILL
                     DQLSDDGILVAPILHNGKQFITRLRKNGTNLQKEILEECLFVPIVDGKE"
     gene            complement(11889..13076)
                     /locus_tag="RJ259_000631"
     CDS             complement(11889..13076)
                     /locus_tag="RJ259_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HDV7366369.1"
                     /translation="MKMDYKEQSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSG
                     IGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSG
                     TESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISG
                     VKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDKKDILLIA
                     DEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHG
                     STYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGF
                     MQGLSLDKSVKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKAL
                     KSF"
     gene            complement(13080..13925)
                     /gene="argB"
                     /locus_tag="RJ259_000632"
     CDS             complement(13080..13925)
                     /gene="argB"
                     /locus_tag="RJ259_000632"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HDV7366370.1"
                     /translation="MIMQKYLEKANVLIEALPYIRKFNSKIILIKYGGSAMENEELKH
                     CVMQDIALLKLVGLKPIIVHGGGKDISAMCEKLGVKSEFKNGLRVSDKATIEVASMVL
                     NHINKNLVHSLQNLGVKAIGLCGKDGALLECVKKDENLAFVGTIQKVNSKILEELLEK
                     DFLPIIAPIGMDENFNTYNINADDAACAIAKALRAEKLAFLTDTAGLYEDFNDKNSLI
                     SKISLEQAKILAPKIEGGMHVKLKSCIDACENGVKKVHILDGRVKHSLLLEFFTDEGI
                     GTLVG"
     gene            complement(13929..14375)
                     /locus_tag="RJ259_000633"
     CDS             complement(13929..14375)
                     /locus_tag="RJ259_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7366371.1"
                     /translation="MLIRAMQKSDYEAVYKLWCEIKGFGIRSIDDSKENIENFLDRNP
                     NLSVVAVIDEEIVGSILCGHDGRTGGFYHVCVHKDHRKKGIAHEMAKFCLEALKAQKI
                     NKIALIAFKNNDLGNEFWKHYGFTLREDANYYDLSLNEYNQTSFNA"
     gene            complement(14385..15413)
                     /locus_tag="RJ259_000634"
     CDS             complement(14385..15413)
                     /locus_tag="RJ259_000634"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HDV7366372.1"
                     /translation="MKIKVGILGASGYAGNELVCILLNHPKVEISYLGSSSSVGQNYQ
                     DLYPNTPLNLCFENKNLDELELDLLFLATPHKFSAKLLNENLLKKMKIIDLSADFRLK
                     NPKDYELWYKFTHPNQELLQNAVYGLCELYKEEIKKASLVANPGCYTTCSILSLYPLF
                     KEKIIDFSSVIIDAKSGVSGAGRSAKVENLFCEVNENIKAYNLALHRHTPEIEEHLSY
                     AAKEKITLQFTPHLVPMQRGILISAYANLKEDLQEQDIRDIYTKYYQNNKFIRLLPPQ
                     SLPQTRWVKSSNFADINFSVDQRTKRVIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDE
                     GLKFFANL"
     gene            complement(15494..18953)
                     /locus_tag="RJ259_000635"
                     /pseudo
     CDS             complement(15494..18953)
                     /locus_tag="RJ259_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_172669436.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(18995..>19760)
                     /locus_tag="RJ259_000636"
     CDS             complement(18995..>19760)
                     /locus_tag="RJ259_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HDV7366373.1"
                     /translation="FISELYAPKDDDDIKKNERVFYTFKNALYLDTIRQKIENEIPKE
                     LRHFFIAPLIYEASVHSNTSGVFKGFYKGKDGIGKFGGEGQNALKRIKGEIELKMPIF
                     SNFSCEFEVMQKDANMLAKELDFFDVVYLDPPYNQHPYSSNYFMLNLIANYKKPEEIS
                     KISGIPKDWNRSTFNKSKFAQDALFELINDLKARVILLSYNCEGFVKKEIFLKRLSTL
                     GKCRILEQKYNTFRASRNLKNRNIHLHEQLYILVKN"
BASE COUNT         6867 a         3305 c         2787 g         6801 t
ORIGIN      
        1 ctcaaaaaat ataaatataa aagtactcaa aaccatgact tataatgaaa aaattatttc
       61 aatgaataat gatcttttag atcatcaaca taaagaactt tttgaaattt ctaaaaaact
      121 ctctttaatg aaccaacgtc atgttggaac aaaagaatta aaaattgtct taagagagtt
      181 gttaataatg atcaatagac atttttcaga tgaagaagcc tttatgagag aaatagaata
      241 tccttatatc aaccatcata caagaattca cagaaaaatt atcttagaaa ttgaagaaat
      301 tatcatcagt gaagctaaat ttgtaaatat aatgaccgaa aaattaaatc tcgttgttca
      361 agattttatc tttaaacata cagccaaaga agattcaaaa atagtaaagt attacgaaga
      421 aaaatttaag aaatagtatt tctcattttt gctatataaa attcacaaaa tatttcactt
      481 taaaatttta ctttagcatt ttatttttgt tataattttt aacctaattt ttataaattt
      541 ttgttattat ccgtttttaa ataaagataa aaaatatcct aattaaaatt aaggataaat
      601 taaggatttt aaagtgaaag tatatttaga taacaacgca acgacaatgc ttgatcctaa
      661 tgcttatgag ttgatgctac cttttttaaa ggatatgtat ggaaatccaa atagccttca
      721 tcaatatggt agcgcaacac atcctgcctt aagagaagct ttggataaac tttatgcagg
      781 acttggagca aatgacctag atgacatagt tgtaacctcc tgtgcgacag aaagcattaa
      841 ctgggtgctt aagggtgtgt attttgatca tattttagat aaagaacgca atgaagtgat
      901 tatttctagt gtagaacacc ctgctgttac tgctgctgct tattttttaa aaagtcttgg
      961 agtaaaagtt atagaacttc ctgtaaacga agaaggggtt tctactgtag aagatttgcg
     1021 taaagtgatt agcgataaaa cagcacttgt aagtgttatg tgggcaaata atgaaacagg
     1081 tatgattttt gatattaaag cgatggcaga acttgcgcat gaatttggtg ctctttttca
     1141 tacagatgct actcaagcag taggtaaaat aaaggttaat ttaactcaag taggagttga
     1201 ttttgcttca ttttcggcac ataaatttca tggaccaaag ggtgtgggtg gactttttat
     1261 aaaaaaagga cttaaactta ctccactttt acacggtgga gaacacatgg gtggtcgtag
     1321 aagcggaact ttaaatgtgc cttacatagt ggctatgggc gaggctttgc gtattgcaaa
     1381 tactatgctt gattttgaag attctcatat acgccgttta agagataaac tagaagatca
     1441 aattttggcc ttgcccgata caacagtggt tggaaaaagg gaacaccgtg tgcctaatac
     1501 aatcttagca agtattaaag gtgttgaagg cgaagcaatg ctttgggatt taaataaaaa
     1561 tggtatagct gcaagtacgg gctcagcctg tgcaagtgaa gctttagaaa gcaatcctat
     1621 tatggaagct atcggtgcgg agcatgattt agcgcataca gctttaaggc tttctttgtc
     1681 acgttttaac actgaagaag aaattgatta tgcagcaaaa caaattaaaa atgcaacaca
     1741 gagattaaga gcaatttctt gtacttatgc ttataatcca aataattaca aataaggatg
     1801 aaaaatggga aaaaatagtt taattggtgg atccatttgg gatgagtatt cacaaaaagt
     1861 tcaagataga atgaataatc ctcaacatat gggagaattt agtgaagaag atgctaaagc
     1921 acgcaatgca aaattgatcg tagctgattt tggtgcagaa agttgtggcg atgcagtaag
     1981 acttttttgg cttgtagatg aaaaaactga taaaattatc gatgcaaaat ttaaaagttt
     2041 tggttgtggt acagctatag caagtagtga tactatggtg gatctttgta taggaaaaac
     2101 tgtagatgaa gcagtaaaaa tcacaaattt agatgtggaa tttgctatgc gtgataatcc
     2161 agaaactcca gctgttccac ctcaaaaaat gcactgttcg gttatggctt atgatgtaat
     2221 caaacaagca gcagcgcatt ataaaggtat aagtcctgaa gattttgaag atcaaattat
     2281 agtttgcgaa tgcgctaggg taagtcttgg aactattaaa gaagtgatta aacttaatga
     2341 tttgcatagc gtagaagaaa tcacacaata cactaaagcg ggtgcttttt gtaaatcctg
     2401 tatcaaacca ggcggacatg aaaaaagaga ttattacctt gtagatattt tagctgaaac
     2461 tagagctgaa atagatagag aaaaactcaa aaatacaatg aaaagtgatg tagcttttga
     2521 tgaaatgacc gtagtgggac aattaaaagc agttgaaagt gttttagatg ctgaaattcg
     2581 ccctatgctt cataatgatg gcggagattt ggaagtgatt gatatacaaa aggctgaagg
     2641 tgcagcaatt gatgtttata ttcgttatct tggtgcttgt agtggttgtt ctagtggaag
     2701 tggtgcaaca ctttatgcta ttgaaacaat tttacaagaa gaattaagtc caaatatacg
     2761 cgttatgccg gtttaaaaaa tagcaagata aaatcttgct attttatagc ttttgcttgc
     2821 aaatcaaggg gtggtaaatt ttctatataa atactacgac ttgggaaagc aaaggttaaa
     2881 ccattttttt caattatacg cataaactca agcattaaac tttgtctagc ttctctaaaa
     2941 tcttttccac ctatttcttt gatataaaaa taaagctcta tattaatact actatctgca
     3001 aattcactta aagccacata acaagcattt ttatagcctt ctaaatcatt aatagataca
     3061 agattttgac gatattttgt tgtatgatcg ccatatttta atgcgctatc ctcatcgtga
     3121 gctactaaat cacttgtatg caaaaattct cttagatctt ttacacattg ttctagtttt
     3181 tcaggagtag catcataacc aacacccaaa tacattctaa catggcgacc catgcgtctt
     3241 ttgctccaat ttttgatatt agctcccata atagttgaat ttggtaaaaa tacaagacaa
     3301 ttatcaaaag ttctaatagt agtttttcta agtcctgttt caaccacagt tccttctatg
     3361 cctgaaacct ctacccaatc tccttgatta aagctattat caaaaagtaa gagtatagaa
     3421 gcaaagaaat ttgcaatgat atctttcgcc gctaaagcaa cagctaaacc accaattccc
     3481 aaagatgcaa taatagccga aatattaaaa ccaagttgag caagaatata taataaagct
     3541 atgataataa tgacaaaata taaaatttta ataattaaat ttacaacttc tttttttcca
     3601 cttttttgag caagtttaga aaccaatacc acgccataac catcaagcat tcttaaaata
     3661 agccatgcaa ttaaaactgc ataaactata tgaaaaaaat tacttaaatt tacactcaaa
     3721 ggtgcaggat aagttgctat agtaagacaa agagaaatag catagacaat caacaagaaa
     3781 cctacgggtt ttttaatatt ctcaataaaa atgactttaa tatcatctac atcattttta
     3841 tttctataaa aaagctgaac aaggaaaaaa tatactatat ttgcaaaaaa acgtcttaaa
     3901 gatataaaaa atactaaaac caaagcagaa attactattt ttccgatatt aacaaaactt
     3961 accccaattg cctcatttat acgatctatc caaacttgaa gctcgagtaa tgaaaaaata
     4021 taattacttt caagcaaatc tgcatttgaa cgtaaatact taagaatttc agaataagaa
     4081 tctacggcat tactgatata tctttctttt agggtaattt tttctaattc ttctggattt
     4141 gtaattttgc ttttaaaact atctaaatta acattagaag aattttgtaa attttccatt
     4201 gccttatcaa cagtagcaat caaatcttca ctgcttgctg tatttttaaa aagtttttcc
     4261 acttcaaaca aagaagaata aaaactttcc acaatgttaa aataaactag attaagagtg
     4321 gcatctgtat aaatgtaagg cttattaata ttcttttttt gaacatctag taatttttct
     4381 tttgctttta aaaatctagc cactgcctct tcattaatct tttgtcctac tatcatatcg
     4441 ggtatttttg ctaaaatagt ctttttgtct ttttcaaatt cacttaaaat accattaaaa
     4501 gtgcttgaat tttcatcatt gtttttctta aattctttaa tttgattgtt aagatcaaca
     4561 tatttttcaa ctaaagcata aattccttca tcttctttac taatattcgc atcaataaat
     4621 ttaaattctt gtgctccaag gtgtaaaata aaaaaacata aactaaaaat aatttttttc
     4681 attgaacttt cctatcctgt attaaagtaa aaatttttgc tttaaaatca tactcataaa
     4741 tttcacctgt ctctataata taataccaag catgtacttc tatttttcct tcatctaaag
     4801 cttcttgcac gcctggataa gtaagtatat tttgcaaaga atttactaaa tttaattttt
     4861 ctgtaagcca tgaacgcata gccaaatcgt ctcttgcaaa aatcatcaca tcttttttta
     4921 tcggatctaa catagtaagc cattttttca cgttaggaat tttatttaac tcttcatcag
     4981 aataataaag agcattgcaa cctccacaat tactatggcc acaaacgacg atatttttaa
     5041 tatgcaatga atttaaagca tactctattg ctgaagttgt cgccaagtaa tcttctccaa
     5101 cgcgataagg tggaactata tttgcaatat ttcgtattac aaaaagctca cctggacccg
     5161 tattagtgat caaatttgga attactctag aatcagaaca acctataaaa agagtatggg
     5221 gattttgctt attttttaga ctttcaaaaa gttcttcatg ctccttaaag tcttcttgca
     5281 taaacttaat cgcaccgcta ataagatttt ccataaaacc aacctgaaac taaaatcttg
     5341 aaattataac aaaatttcag caaagatttc atttaagcat aagatattat ataaattaac
     5401 tttttattta gtctaatatg ttagatttcg ctcaagattt taaaaaatct aacaattttg
     5461 caaggagaat tttatgagtc tttatgatag agactactca agatcaaaag aatttgaaaa
     5521 tacacgctca agcgaattaa gtatttttat taaacaaact tatcaacttt ttgctgcttc
     5581 attattagct gcaacagtag gtgcgtatgt aggaattttt gctttagcat cattttttat
     5641 acaatcacaa gtaacttttt ggatcctttt tgctgttgaa atcggacttt tatttgcttt
     5701 gcaatggaaa aaaagagaag ctccattaaa tcttgtttta ctttttggtt ttactttctg
     5761 ctcaggttta acgcttacac ctttacttat ttcagtttta gctctaccag ctggaggaat
     5821 tatcatcgct caagcttttg ctttaacaac agttgctttt gcaggactta gtgtatttgc
     5881 tatgaataca aaaaaagatt ttactgttat gggtaaagct ttatttatag tattaatcgt
     5941 tattgtagca gcatctttac taaacctttt cttccaaagc agtatagtta atctagctat
     6001 ttcagcagta gctgcaatat tattttcatt ttacattctt tatgatacgc aaaatattat
     6061 ccgcggaaat tatgaaactc caatcgaagg tgcagtagca ctttatcttg attttgttaa
     6121 tcttttcgta tctttactta atatcttaag aagcttcaat agcagataag tttttgtggg
     6181 atttttctca caaaaacttt tcaagtttca aaacttttca agttttattt agctaaaata
     6241 atcatttaaa aattaacttt taggaaattt caatgatcac tcttttaatc attttacaat
     6301 ttatcatcgt tgtagttatt tgtatagcag ttttacttca aaaaagttca agtataggac
     6361 ttggagctta tagtggaagc aatgaaagtt tatttggcgc caaaggaccg gctggatttt
     6421 tggcaaaatt tacctttgtc atgggaattt tacttattgc aaatactatt ggtcttggtt
     6481 atttatacaa taaagctagc aaggactctc tagcagagaa aattaaagta gaaaacaaca
     6541 acactactat tccaagtgct cctattgtgc ctactacccc aaacacaaat tctatcgctc
     6601 caagtgcacc acaacttcca agcgatgtta attcaagtaa ataattaaag gaaatgataa
     6661 tgctaaatga aatttttaac aaacaaaaaa cccaaagtga aaaatcttta gaagccttaa
     6721 aaaaagactt taccacttta agaactggaa aagttaatat ccatatttta gatcatatta
     6781 cagtggatta ttatggaact caaactcctt taaatcaagt agcaactgtt ttagcaagtg
     6841 atgcttcaac tattagcatc actccttggg aaaaaccttt actaaaaacc atagaaagcg
     6901 ctattgcagc tgcaaatatc ggtgtcaatc caaacaatga cggcgaaagt gtaaaattat
     6961 ttttccctcc gatgactaga gagcaaagag aagaaaacgt aaaacaagct aaagctatgg
     7021 gtgaaaaggc aaaagtttct ataagaaata tacgcaaaga tgccaacgat gcagttaaaa
     7081 aactagaaaa agataaggca ataagcgaag atgaagcaaa aaaagcttat gatgaagtgc
     7141 aaaaacttac cgacacctat acaacaaaaa ttgatgaggg tgtaaaaagc aaagaaagtg
     7201 aacttttaaa ggtttaacga tgaatttaga gcaaatttat aaagattgtg gtgcttattt
     7261 agaagggcat tttttactaa gttcaggtaa gcattcgcag ttttatcttc aaagtgcaaa
     7321 agttttagag gatccaaaat tagcagcaaa actttgtgat gaacttgcaa agattattgc
     7381 aagctataag atagaatttg atagcatttg ctctcctgct ttaggtggaa ttttagcagg
     7441 ttatgagctt gcaagagctt gtagtaaacg ttttatcttc actgaaagag taaataaaga
     7501 aatgacttta agacgtggtt ttgaagtaaa aaagggtgaa aaatttataa tttgtgaaga
     7561 tatcattact acaggtggta gtgctttaga gagtgcaaaa atcattgaaa gtttaggtgg
     7621 tattgttgta ggttttgcag cattggcaaa tcgtggtttt tgtgcagtag aaaatttaaa
     7681 atctccaaga aaagataatg cgaaattacc tgaaaattta ccactcttta ctctaggaaa
     7741 ttttgaattt gaaatttacg atgaaacaaa ttgtccactt tgtaaaaaag ggaataaagc
     7801 tataaaacca ggaagccgtg gaaattaaat gaaaactaaa gcaaaaatta gctctagatg
     7861 gctaagattt agagctttgc ttatagatat ttttcttatt tatgttccta ttttgtattt
     7921 attttatttt ttattaggct ctaaagaagc ttttttaaac aaccatttta tcacaacttt
     7981 atgtactttt ttatttggtt tgattcaagc tattttttta acaaaaaagg cacaaagccc
     8041 aggtcttaaa gcatatgatt tatatcttat tgatataaaa acgggaaaga aactaagttt
     8101 tcttagaatt ttactaagat atgtgatatt tattataagt tttggcttac tctttggttt
     8161 atttgtcagt tttgtaagaa aagatcgttt aaatttacac gatattttaa ctcaaagttg
     8221 tatagctact aaagcataaa gaaaggttaa aaatgcaaag aaaaagaatt tacaatccaa
     8281 gttcaaacga aaccctagga gatcgtaaag tttttgatgg caacccacat ggaattttaa
     8341 atttcactaa ggcaaaatat acttgggctt taaaactttg ggatttaatg gaggcaaata
     8401 cttggtttcc aaaagaagtg gatacaacta aagatgcact tgattatcgc tgtaatttaa
     8461 ctgcaggtga aaaaagaatg tatgatttgg tttggagtca gcttatttct atggatagtt
     8521 tccaaaccaa taatttagca gataatatca acccttacat cacagctcct gaaatcaatg
     8581 cggttttggc acgccaagct tatgaagagg caaaccattc aaaatcttac gctgttatgg
     8641 tagaagcgat ttgcgataat acagatttga tttatgaaat ggaaaagcat gatgaaactt
     8701 tgcgtgaaaa aaatgacttt atttcaagta tttatgaaga attagcaggc gatgtagatg
     8761 ataataaact tcttttggct atggtggcaa atcaaatttt agaaggagta tatttttata
     8821 gtggttttac tgccatttac gcacttgcac gtgcaggaaa aatgctaggt tcagcacaaa
     8881 tgatccgctt tatccaaaga gatgaaatca cacatctttt attatttcaa aatatgatca
     8941 attcagtacg caaagaaaga cctgatttat tccatgatga aaatatcaat aaaatttatg
     9001 atatgtttaa aaaagctgga gatcttgaga tcaaatgggg taaatacatc actcaaaatc
     9061 aaatcatggg ctttactgat gatatcatag aagaatatat ccattatctt gtagatcaaa
     9121 gattaagtgc gatcaattta gataagttat ataatgcaaa acatcctatt aaatgggtag
     9181 atgatttttc aaaatttaac gatcaaaaga gcaatttctt tgaaagtaaa gtaacgaatt
     9241 attctaaggg tagtataagc tttgatgact tctaaaactt ctttagcctt gctttgtgat
     9301 ttttatgaat ttacaatgtc tcaaggctat ttcaaaaaca ataaaaaaga tcaaatttgt
     9361 tattttgata tattttttag aaaaattcca gattcaggat cttttgctat ttttgcaggt
     9421 cttgaagata ttttagactt tgttgaaaat ttgagttttg atgcagaaga tatagaattt
     9481 ttaagaaaac aaggtatttt tgatacagaa tttttagatt ttttagctaa ctttaaattt
     9541 aagggtgaaa tttatgctat gcgtgaagga gaagtgattt ttccaaacga acctttgcta
     9601 tgtattaaag ctacaaccat agaagcacag cttttagaaa cttttttact tttaagttta
     9661 aaccaccaaa gccttattgc taccaaaacc aatcgtatcg tgcgtgcagc taaagacagt
     9721 aaaattttag aatttggttc acgcagagca caaggaagtg aagcagcctt aaaaggagca
     9781 agagcagctt ttataggagg ttgcatagga agtgcttgta ctttagcagg aaaaatttat
     9841 aatatcccta tcaatggaac tatggcacat tcttgggtgc aaatgtttga aaatgaactt
     9901 gaagctttta aagcttatgt gaaaatttat ccaaaaaatc ctgttttttt gattgatact
     9961 tatgattgtc taaatagcgg acttaaaaat gcgattaaag tttttaaaga atttggtatt
    10021 caagaaggcg gcgtgagaat agattctgga aatttacttg agttgagttt gaaaatcaga
    10081 caagagcttg atcaagcagg acttcaaaaa tgtaaaatca tagtttctaa cgcacttgat
    10141 gaatggagca ttaaaaaact caaagaacaa aatgcaccta ttgatatctt tggtgtaggt
    10201 gaaagattga tcactgcttc aagtgaccct atttttagtt gcgtttataa actcgcagcc
    10261 ttagaagatc aaggcataaa acctaaaatc aaaatcagcg aaaataacga aaaatcaacc
    10321 ctacctcatt ttaaaaagct ttttagagtt tatgataaaa acacgcaaaa aatccttttt
    10381 gatgaacttt atgtttttga cgaaaaccca aatcaagatg aaaatttaga acgcaaagaa
    10441 cttttagaat tagtctacaa agaaaaaaga cttcttaaaa agtcatcttt aaatactatt
    10501 caagattata caaaagagca aatttcaaaa ctcgatgaga gttttttaga tcttgatcgt
    10561 tttgtgaaat ttgaagtaaa actctcgcct aaacttcaaa atatcactga agatctttta
    10621 aaaactcgtt tttaaaatcc acataattta aagcggattg ttttagaaag ctgacttctt
    10681 catcgtttaa ttcacgcaca aattttgcag gatttccaag tatcaaagag cgtggcggaa
    10741 atttttttcc ctttgttaca acgcttccag cacccactat gctatcttct tctatcaaag
    10801 cattatccat gataacagca ttcattccga ttaaaacacg attttttatc acacaagcat
    10861 ggataacgca attatgtcct atagttacat catctcctat tattgtagga aaaccagcat
    10921 cttttaactt tcctttttca tcaaattccc tatgccaaac atgaactgtg ctaagatctt
    10981 gaatattggt tcttttgcca atttttataa aattaacatc ggctcttaaa acacaattaa
    11041 accaaatact actttcatct cctatttcta tttctcctat gattttagcg ccctctgcaa
    11101 caaaaacatt ttgacctagt ttgggactat gatttttaaa ttttataagc atttttttcc
    11161 tttttattta agtatagcta agtttaactc tatttcaact tttttagtta caatttttat
    11221 ttaaatttat aggagaagta atgaacgcat ttgaacaaaa aagatgtcaa aatatggctg
    11281 aagaaattgc acaaaaagtt tttatcaatg aagaactttt taatgctttt tgtcaaattc
    11341 cacgtgaaat tttttctcct ttaaaagccc atgcttatcg ccttgatgct ttgcctttag
    11401 caaattctca atggattagt tcacctttaa ctgtagctaa aatgactatg gctttagatt
    11461 ttaaaaatgc tgatagtatt ttagagatag gttgtggaag tggctatcaa gctgcgattt
    11521 taagcaaagt cataaggcgt gtttttacca tagaacgcat agaaaattta gccaaaaaag
    11581 ccgctcaaac tttcagagaa ttagaacttt ttaatatcaa tgtaaaattt gatgatggac
    11641 aaaatggctg gaaaaattat gctccttatg ataggatttt attttctgct tatgcgacac
    11701 aaattcctga aattttactt gatcaattaa gcgatgacgg tattttagtc gctcctattt
    11761 tacacaatgg caaacaattc atcacacgcc ttagaaaaaa tggcacaaat ttacaaaaag
    11821 aaattttaga agaatgttta tttgtgccta tagtagatgg aaaagaataa atttttttac
    11881 aaaatttatt aaaaactctt tagagccttt cttaactttt cactcatttc atcaatatgt
    11941 tctttttgta aaatcaaagg aggtaaaaat ctcaaatcat tctccccgca acttattaat
    12001 aaaagtgcat tttcttgaca tttttgaatg accttagcta cttttacact tttatcaaga
    12061 ctcagccctt gcataaaccc taagcctttg cgttttttac aaaaatcaaa ttcatttatc
    12121 aactcatcta aactttgctc taaataaggc gtgagtttat tgacattttc taaaattttt
    12181 tcttctttaa aaatttcaaa aaccgcattc actcctgcac aaactaaagg atttccacca
    12241 taagtactac catgatcgcc tgcttctaaa gaattgcttg ctaccttttg atttattaca
    12301 aaagcaccca cactaagccc acaacctaag gccttagctg aagtcatgat atcaggcaaa
    12361 atttgtgcgt gctcataggc aaaaaatttt ccacttctac ccatgccaca ttgaatttca
    12421 tcagcgatta ataatatatc ttttttatcg caaagctttc ttaaggcttt gtaaaaatct
    12481 ttatttgcag gatttattcc accttctcct tgcacgcttt ctaagataat ggcacaagtt
    12541 ttttcattca ccagtttttc aacgcttgaa atatcattat attttgcaaa tttaacccct
    12601 gaaattaaag gtttaaaagg cttttgatat ttttcattag cagtaagcga taaagcccct
    12661 aaagtacgcc catgaaaaga atgcttaaaa gcgataaatt gtccaccctt aacacctttg
    12721 ttaaaggcgt attttctagc tgttttcatc gctccttcta tactttctgt accagaattt
    12781 gtaaaaaaaa cacgctctaa agcactagct ttggctaaat ttttagctgc agcagctata
    12841 ttttcattat aatataaatt gctagtatgc aaaagcttat ccacttgcgc tttgatttta
    12901 gcattaaatt tagcatgatt atatcctaaa gcacaaacac ctatgccact tgaaaaatca
    12961 agatattttt tagccttatc gtcaaaaaga taaaccccct gccctttttc taaaactata
    13021 tcaaaacgct tataggtagg gataatatga ctttgttctt tataatccat tttcatcctt
    13081 taacccacca aagtgcctat accttcatcg gtaaaaaact caagcaacaa agaatgtttc
    13141 acacgcccat ctaaaatatg tacctttttg actccatttt cacaagcatc aatgcaagat
    13201 tttaatttta catgcatacc accttctatt ttaggagcta aaattttagc ctgttcaagg
    13261 ctgattttag aaattaaaga atttttatca ttaaaatcct cataaagccc tgcagtatca
    13321 gttaaaaaag caagtttttc agcccttaaa gccttagcga tcgcacaagc tgcgtcatca
    13381 gcgttgatat tataagtatt aaaattctca tccatgccaa taggagcaat gataggtaaa
    13441 aaatcttttt ccaaaagctc ttctaaaatt ttcgaattta ccttttgtat cgtgccaaca
    13501 aaagctaaat tttcatcttt tttcacacat tctaaaagcg cgccatcttt accacaaagc
    13561 cctatggctt taactcctaa attttgcaaa ctatggacta aatttttatt gatatgattt
    13621 aaaaccatgc tggctacttc aatagtggct ttatcactaa ccctaagacc gtttttaaac
    13681 tcactcttta cgcctaattt ttcacacata gcagaaatat cttttccccc accatgtaca
    13741 ataataggct ttaaacccac gagttttaaa agagctatat cttgcatcac acaatgcttt
    13801 agctcttcat tttccatagc tgatccgccg tattttataa gtataatctt agaattaaat
    13861 ttgcgtatat aaggcaaagc ttcgattaag acattagctt tttctaaata tttttgcatg
    13921 atcattcctt aagcattaaa gctagtttga ttatactcat ttaaagaaag atcgtaataa
    13981 ttcgcatcct ctcttaaagt aaaaccataa tgtttccaaa actcattgcc taaatcattg
    14041 tttttaaaag cgattaaggc gattttatta atcttttgag cttttaaagc ctcaagacaa
    14101 aattttgcca tctcgtgcgc tatgcccttt tttctatgat ctttatgtac acatacatga
    14161 taaaatcctc ctgtgcgtcc atcatgcccg caaagtatac ttcctacaat ttcttcatca
    14221 atcactgcta caacgctaag atttgggttt ctatctaaaa aattttctat attttctttg
    14281 ctatcatcaa tgcttcttat cccaaagcct tttatctcac accaaagctt ataaacggct
    14341 tcataatcgc ttttttgcat agctcgtatt aacattttta tcctttacaa atttgcaaag
    14401 aatttaagtc cttcatcttc atcaaaatca aacattaaat tcatattttg aacagcttgt
    14461 cctgctgcac ctttgattaa attatcaata gcaccaagca caataacacg ctttgtgcgt
    14521 tgatctacac taaaatttat atccgcaaaa ttgcttgatt taacccaccg agtctgcgga
    14581 agcgactgcg gcggtaaaag ccttatgaat ttattgtttt gatagtattt tgtataaata
    14641 tcgcgtatat cttgttcttg caagtcctct tttaaatttg cataagcact gattaaaatt
    14701 cctctttgca taggcacaag atgaggggta aattgtagag tgattttctc tttggccgca
    14761 tagcttaaat gctcttcaat ttcaggagta tggcgatgca aagctaaatt ataagctttg
    14821 atattttcat taacttcaca aaaaagattt tccacctttg cacttcttcc tgctccactt
    14881 actccacttt ttgcatcaat aataactgag ctaaaatcaa tgatcttttc tttaaaaagc
    14941 ggataaagac ttaagataga acaagtggta taacaacctg gatttgccac taaacttgct
    15001 ttttttatct cttctttata aagctcacaa agtccataaa ccgcattttg caaaagctct
    15061 tgattaggat gagtgaattt ataccaaagc tcataatctt taggattttt aagacgaaaa
    15121 tccgcactta aatcaatgat tttcatcttt tttaataaat tctcatttaa aagtttagca
    15181 ctaaatttat gcggagtagc caaaaacaaa agatcaagtt caagttcatc taaattttta
    15241 ttttcaaaac ataaatttaa aggggtgtta ggataaagat cttgataatt ttgccccacg
    15301 ctagaactcg aacccaaata agaaatttca accttgggat gattaagcaa aatgcaaaca
    15361 agttcatttc ccgcataacc actcgctcct aaaatcccaa cttttatttt catctttatc
    15421 ctttaaatgt aaaagcaagt attataaaca aaaaagctta aaataaaaat acaattttta
    15481 aattattttt tatttaaaaa ctatatctta aattagcatt tgcactccaa tctacattta
    15541 aatcgccaaa aaatgtcttt tcaaattcaa aattaaagcg tgttttatcg ttaagcttat
    15601 aatcatttcc taaatttata aacattcttt gatctttttt ccttcatatc ttctctgact
    15661 tgcttgatcc tctaaaattt gatctcctgc tttaatcgga tccgcataca aaccaagtcc
    15721 tgttctaaaa tttaaatttt aattttgact tcctatgaaa aatgctgttt ttacgactaa
    15781 aggaatataa gaaaatcgtt ttaaactagc aatatctcct tttagatcca tagctcctac
    15841 ataaccactg ataaattcca aatcggctca agataaaatt tatcataagc ttttctataa
    15901 cctaactcag cacttaagat aatattatgc gaaccatcat tatcatctaa tctaccttga
    15961 tttcctggaa taaaatttgc atttatttca ttttgataat aaatatatct aaaacaaaat
    16021 cactataaaa accttactcc actgtaaagc tcgaaattcg aatactcgtt taatttatca
    16081 tgtccgcttt gaatttcaaa gtattttcca ctattatact catcactcgt accccatcca
    16141 aaagttctta accatacacc actttcataa ggattattgc gtaattcccc cattctttta
    16201 tgcatattat tccactccta tcatggagcc taaaatagct tgagcaagta tagatttagt
    16261 ttttacaata gcttgagtat tatcattagt aaaaaaatat tcatctttaa tcttagaatc
    16321 aattttttct aaattccact ctgggcaaaa ttttcctcat tatgagaaaa aacaacattt
    16381 ggggtatacg tactaaaacc ttgctcacat ttggcatagt aaaaaattcc tttgttaaat
    16441 gtttattttc atcttttaaa tgagctagta agatatttaa acccgctttt tactaggatt
    16501 attaagaaaa attaatacta aagtattatt tactccttgt gtgctttcct tagaattaat
    16561 ataatctgat ttagaatttt caaaatccgc attgatttta aatattgtat tatttgcact
    16621 taattttttt gcatcaactt tcctataaat agcacttttt tctacttgaa gattgctcat
    16681 ttatatatga gactcaagca aagaatcttt aatcgcaaga ttttttttgc gtatcattga
    16741 tacctttgat attaccacta aaaaatgtgt tttgcaaagt aacatcagaa tgatcaagat
    16801 ttaaatttac actaaaataa accttttcta tcttagcatt ttgggtattt taaagctttt
    16861 gctcaaaagc catttctttg ccaactcctg tttatacaac atctccataa gaataatcat
    16921 cagtcttatc aataatattt tccccatctt tttcatcgat ccacaaattt ttacttccaa
    16981 gctctatttt ggaattttta gcattaaggt tttctacttt taagcttaca ttacgcccta
    17041 aataaaactc gctttttttc taaattaagc tcttttaaaa caaaaaccct atcttcccaa
    17101 tcttcttgtg taaaacttac aggcttagtt aaagcactta aaccatgttc ttgaagtttt
    17161 ttagcttgtt ctttgcttac ataagcgtgt attctagcat gtccttgaaa atttaacttg
    17221 gcattttctg tcctaaaaac accttcttta ttgtaaatat taccatcaaa aatcaaagct
    17281 ttgtctgtat tggcactcat tgttacagct tcatctgaaa agatattgcc atgataaaga
    17341 taatcttgct tgttttctaa atttaaatgt attcctgatt aagaacttgt gataaaaaca
    17401 ttattagagt cagttttaat ttgatcaaaa tttaatgtta agcctgataa atccaaagtt
    17461 ctgccattca tataaatttc gctaaaactt aaaccttcac cctcaagact taccttggtc
    17521 ctcacccatt ctaagtcctg tatccacact ttgacttttg acaacaagct ctccttcacc
    17581 cattttatta aagaaaatca tcttttttgg ttttaacatt atattctacc ttgaaccctt
    17641 atcagcataa attccgccat gtataagcca tttatcgcct gttatttgcc aatttgaatt
    17701 tttatcaaat ttaaaacact agcgcctaaa tccacatcgc tatttaaatt tatacttcca
    17761 ttttgagaaa aatacaaatc cttgctattt tgcatttctt caattctctt atcacaatta
    17821 ttttatcatc aaaagaattt ttatagctta cataacccac attagtctta gaaatcaaac
    17881 ttacattttc tattttttta ccatctttca tcaaaccatc gctactaagt gtataagttc
    17941 cagatcctat gactacttta tgagcatttt aaaattcatt gatctttgct tgattgatca
    18001 aagcataatc aacctgcaaa caagtatatc catagtaaaa tggacattac aattactcgt
    18061 acttactaca cctactaaat accatttttt atccatctta tcataaacat aaactctact
    18121 tccagaatcc ccggatattg aagaacttgt aaaaggattt cttttatcat tggtataatt
    18181 aagaaattgc aacttaaaac gcttatcttc agtattttta ggagttaaac cgacaaaacc
    18241 tcctaaattg atttcattag aatcaaaaat cttaatgggt actttatttg tatcttcaaa
    18301 acctaaagct acaataccac ttccctctct tgcaaagtac tcataacccg aactatcaaa
    18361 aagcttgcct ttaccttttg aataatcaca ttttccactt tgacaactat cccaaaatgg
    18421 atccttgtat tcataaatat ctccaccatc gccagaattt tttcaataag atttaaatct
    18481 ttactcaaat ttgcactttt attgagacta atcttactca tttttaaaac agcaaaatcc
    18541 acattttttt tataagtaaa attatcactt gagcttacga ttctatttgc tacccctcca
    18601 aagtgtaaaa cactaccttg tttcacatag tctttattta cttcccagta tttaaacttg
    18661 tactcatatg agaagcgctg actatataag attgtcctat attggtaaat tctccttgga
    18721 attttcctcc acgatttgaa gtagaaaaat caatcatagg cacattaaaa gagatatttt
    18781 gactaggatt ttttgctaaa atttaaaagc caatttgacc tacttgaaat ttgcctttat
    18841 tactggcaaa atcaagatat tcttgaaaat aactttggat caatagctga agcaaaaaga
    18901 tagttagaaa aaccaaatgc cattaatgta caaaaagata attttagttt cataaatccc
    18961 tcctcatttt taagtgcaat tttagcacga aaaactaatt tttaactaaa atataaagtt
    19021 gctcatgaag atggatattg cgatttttaa gattgcgaga agctctaaaa gtattatatt
    19081 tttgctctaa aatccggcat tttccaagag tgcttaagcg ctttaaaaaa atttcttttt
    19141 ttacaaaacc ttcacaatta taagaaagta aaatcactct tgcttttaaa tcattaataa
    19201 gttcaaataa agcatcttgg gcaaattttg acttattaaa agtactgcgg ttccaatcct
    19261 ttggaatgcc actgatttta gaaatttctt caggtttttt ataatttgca attaaattta
    19321 gcataaaata attagaacta taagggtgct gattataagg ggggtcaaga tacactacat
    19381 caaaaaaatc aagttctttt gcaagcatgt ttgcatcctt ttgcatcact tcaaattcac
    19441 aagaaaaatt tgaaaaaata ggcattttaa gctctatttc tcctttaatg cgtttaagtg
    19501 cattttgtcc ttcgccacca aattttccga tgccatcctt acccttataa aaacctttaa
    19561 aaactccgct agtatttgaa tgaacactgg cttcataaat caaaggagct ataaagaaat
    19621 gcctcaattc ttttggaatt tcattttcga ttttttgcct tatagtatca agatataaag
    19681 catttttaaa agtataaaaa accctttcat tttttttaat atcatcatca tcttttggag
    19741 cataaagctc actgataaaa
//
LOCUS       DAPIWJ010000023        19546 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.023, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000023 DAPIWJ010000000
VERSION     DAPIWJ010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19546)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19546)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19546
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.023"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            151..753
                     /locus_tag="RJ259_000637"
     CDS             151..753
                     /locus_tag="RJ259_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDV7366374.1"
                     /translation="MKRNEHNIVLIKNPNFNALIDTGFLDTIDTLKEKLHIHKTDFKD
                     ITHIILTHAHPDHIGALMSEENLFPKAQILIDKKEYDFWIKSDRQEIKNTLLKLKNIE
                     FIDHSKDLIFQNSGIKAIPAYGHTPGQNAIIIDDKIVFWGDLLHLYDIQIPKPKIAIK
                     FDIDQNEAIQTREKLLKEFKERKLKVIGTHVPFIKPKFLD"
     gene            841..1059
                     /gene="infA"
                     /locus_tag="RJ259_000638"
     CDS             841..1059
                     /gene="infA"
                     /locus_tag="RJ259_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HDV7366375.1"
                     /translation="MAKDDVIEIDGTVLEALPNANFKVELGNKHVILCHIAGKMRMHY
                     IRIMPGDKVKVELTPYSLDKGRITFRYK"
     gene            1231..1344
                     /gene="rpmJ"
                     /locus_tag="RJ259_000639"
     CDS             1231..1344
                     /gene="rpmJ"
                     /locus_tag="RJ259_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HDV7366376.1"
                     /translation="MKVRPSVKKMCDKCKVVRRKGVVRIICENPKHKQRQG"
     gene            1347..1712
                     /gene="rpsM"
                     /locus_tag="RJ259_000640"
     CDS             1347..1712
                     /gene="rpsM"
                     /locus_tag="RJ259_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HDV7366377.1"
                     /translation="MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKR
                     VHELSEDEAAAIRKEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQK
                     TKTNARTRKGKRKTVGAKS"
     gene            1722..2114
                     /gene="rpsK"
                     /locus_tag="RJ259_000641"
     CDS             1722..2114
                     /gene="rpsK"
                     /locus_tag="RJ259_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HDV7366378.1"
                     /translation="MAKRKIVKKKVVKKNIAKGIVYISATFNNTMVTVTDEMGNAIAW
                     SSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSVGA
                     MEGIKVTFLKDITPLAHNGCRPPKRRRV"
     gene            2142..2768
                     /gene="rpsD"
                     /locus_tag="RJ259_000642"
     CDS             2142..2768
                     /gene="rpsD"
                     /locus_tag="RJ259_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HDV7366379.1"
                     /translation="MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHG
                     ARKGKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDN
                     IVYRMGFATTRRFARQLVTHGHVLVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRA
                     IELTAQTGIVAWVDVEKDKRFGIFTRKPEREEVVIPVEERFIVELYSK"
     gene            2781..3794
                     /locus_tag="RJ259_000643"
     CDS             2781..3794
                     /locus_tag="RJ259_000643"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HDV7366380.1"
                     /translation="MRNITTSAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLR
                     RLLYTSTIGYAPTAIHIDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGDSNKEIVE
                     FSFKGSKEIYGKDLNNDQVEVVNKDAYLATINEDAELKFTLIVEKGIGYVPSEEIKEL
                     INDPKFIALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALE
                     AMYKQLSVFDKITNVRSVIKNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYI
                     GELALMSVSELAGLKNLGKKSLDEIKNIMESIGFPVGTSKLSDNKEILKNKIAELKAQ
                     NEG"
     gene            3798..4151
                     /gene="rplQ"
                     /locus_tag="RJ259_000644"
     CDS             3798..4151
                     /gene="rplQ"
                     /locus_tag="RJ259_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HDV7366381.1"
                     /translation="MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKEL
                     RGYVERLITRARLGDFNAHRAVFASLQDKNATNKLVTEIAPKFKDRNGGYTRIIKTRI
                     RRGDAAEMAFIEFVA"
     gene            4324..5223
                     /gene="hisG"
                     /locus_tag="RJ259_000645"
     CDS             4324..5223
                     /gene="hisG"
                     /locus_tag="RJ259_000645"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HDV7366382.1"
                     /translation="MQENTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFST
                     NLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELERQSLGENPSYKLLKKLDFG
                     YCRLSLALPQENKFQNLKDFEGLRIATSYPQLLKRFMKENGINYKNCTLTGSVEVAPR
                     ANLADAICDLVSSGATLQANNLKEVKVIYESRACLIQKENALSKEKQALVDKIMLRVA
                     GVMQARESKYIMLHAPKEKLDKIQALLPGVERPTILPLAHDEKNVALHMVSKENLFWE
                     TMEALKEEGASSILVLPIEKMLK"
     gene            5231..6517
                     /gene="hisD"
                     /locus_tag="RJ259_000646"
     CDS             5231..6517
                     /gene="hisD"
                     /locus_tag="RJ259_000646"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HDV7366383.1"
                     /translation="MQILVYDNLDEKQKEEALKRPAISAKDEISKIVSSIIKEVQEKG
                     DKALIEQALKFDKAEISKIKITQEEITQASNRLDKDLQEAILVAYENIKKFHEAQIPH
                     EIALETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPA
                     KINDAVLFCAKLCGVDEIYQMGGAGAIAALTYGTQSVLKVDKIFGPGNAFVTEAKRQV
                     SSDINGAAIDMQAGPSEVLVIADDLANEKFVASDLLSQAEHGADSQVILVCLSQDFAK
                     KASDEVQSQLELLPRKELASKSIANSRIIIAKDLNQALEISNLYAPEHLIIQTQNPRE
                     LLKGVKHAGSVFLGAYSPESMGDYASGTNHVLPTYGLTKTHSSLGLADFSKRMTVQEL
                     SKEGFLALGKSVEILAQNEHLDAHKNAVTFRLESLK"
     gene            6514..7572
                     /gene="hisB"
                     /locus_tag="RJ259_000647"
     CDS             6514..7572
                     /gene="hisB"
                     /locus_tag="RJ259_000647"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HDV7366384.1"
                     /translation="MSQKILFIDRDGTLIEEPKSDFQIDTLEKLRFEKDAIPTLLKLK
                     KFGFKFVMVSNQDGLGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCA
                     CRKPKTAMLEEYIKHELYDKEQSFVIGDRESDMILASNLGVRGLKYGELSWKEIENEI
                     LSSFRSASYQRTTKETDIKVKVCLNGGKVSIKTGIDFFDHMLEQIAVHGGIGLEISCK
                     GDLEIDEHHSVEDVALALGACIKKALGDKIGIARYGFALPMDECLASCAMDFCNRPHL
                     VYKAKFKKSHLGALSTEMIEHFFYSLSYAMGVSLHLKVKGKNDHHKAEGLFKAFAKAL
                     KMAVKIESENLASSKGVI"
     gene            7569..8156
                     /gene="hisH"
                     /locus_tag="RJ259_000648"
     CDS             7569..8156
                     /gene="hisH"
                     /locus_tag="RJ259_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HDV7366385.1"
                     /translation="MKIIIIDTACANLASLKFCLDRLGFNATISRDLKELESADKLFL
                     PGVGTAKEAMKNLEQFNLIDFIQNTKKPLLGICLGMQILGNFSEELNQETLKLIDFTT
                     QKFKAKEGFTFPHMGWNEVYSSHALFKGLEGAYFYFVHSYCVGLGKYTIADCEYSQKF
                     SASVMKDNFYGVQFHPERSSEAGEILISNFIKDIG"
     gene            8153..8884
                     /gene="hisA"
                     /locus_tag="RJ259_000649"
     CDS             8153..8884
                     /gene="hisA"
                     /locus_tag="RJ259_000649"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HDV7366386.1"
                     /translation="MTQIIPALDLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAG
                     AKELHLVDLTGAKDPSKRQFALIEKLTKEVSVNLQVGGGIRSKEEVKALLDCGVKRVV
                     IGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFY
                     SNKGLKHILCTDISKDGTMQGVNVRLYKLIHEIFPNICIQASGGVASLKDLENLKGIC
                     SGVIVGKALLDGVFSVEEGIRCLAN"
     gene            8869..9825
                     /locus_tag="RJ259_000650"
     CDS             8869..9825
                     /locus_tag="RJ259_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG2958 family protein"
                     /protein_id="HDV7366387.1"
                     /translation="MSSKLSYKELTLEILKQSDRPLSVNEIWQKALEQGLDKKLSSIG
                     QTPIATLGARIYVDIKELQHNSLFIKASQKPTTFWLKERENELLKLDNKNEITNEKQE
                     KNKFHERDLHPLLVKFLYENLDFNLNCKTIYHEQSKKGKGGEDKWNYPDIVGVYFPYD
                     DYEKETITLLENIKQNSYKLFSFELKIALNFSNLKECYFQAVSNSSWANEGYLVVLQE
                     IDSEVLSELRRLNQSFGIGVIKLEKDISNSQILISAKEKELDIQTLNMLINKNPNFKE
                     FIDDINKQIKVGKEAKIQANFDEIKSDEEMEKYLKEKCILEK"
     gene            9826..10593
                     /gene="hisF"
                     /locus_tag="RJ259_000651"
     CDS             9826..10593
                     /gene="hisF"
                     /locus_tag="RJ259_000651"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HDV7366388.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIIELARYYSQNGI
                     DELVFYDIAASARKERISREWVSEVAKNINISFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPSLITRLAKSFGVQCVVVGIDSFKDENGNLKVFQYTGDEKTSKHSGKSTLE
                     WVKKVQDLGAGEIVLNMMNQDGVKNGYDLEQLEAVYKICKVPLIASGGAGKMEHFLEA
                     FKLGIDGALAASVFHQKLIDIKELKIYLKNQGLSIRI"
     gene            10595..11218
                     /locus_tag="RJ259_000652"
     CDS             10595..11218
                     /locus_tag="RJ259_000652"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HDV7366389.1"
                     /translation="MQNFKELNEKIAWQKVDNLLPVIIQDAKTCEVLMLGFMNNEALE
                     KSLESGKVVFFSRTKQRLWMKGEESGNFLNIIDLSLDCDNDTLLILANPVGPTCHTGD
                     ISCFEKISKNADFVFLARLEKLINARKNADENTSYTAKLFKSGTKRIAQKVGEEGVET
                     ALAATVKDKEELICEAADLMYHLSVLLADANLSFSDVISKLKERHKA"
     gene            complement(11243..12403)
                     /locus_tag="RJ259_000653"
     CDS             complement(11243..12403)
                     /locus_tag="RJ259_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
                     N-succinyltransferase"
                     /protein_id="HDV7366390.1"
                     /translation="MINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQ
                     ASFALINYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEE
                     DGHQNIDLLKIIKDKFKDDEFSFVCLFEDKEPLSVESIYLKLYLLSTKKVPLRSINLN
                     GAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTR
                     ILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGA
                     SILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEEL
                     AKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAMIVALNKKAVKLNEALH"
     gene            complement(12429..13535)
                     /locus_tag="RJ259_000654"
     CDS             complement(12429..13535)
                     /locus_tag="RJ259_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HDV7366391.1"
                     /translation="MKEQILEKLKTVKYPGFEKDIVSFNFVKDIKIQDDGVFIDIEIV
                     SANPEVANEIRKNTIEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMV
                     SSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQRLK
                     PILTHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD
                     AQITSAQSIPIAAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCPDNG
                     KEYDIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSSKRYLMA
                     AEKIWSFIEKINNEGGADNSAIQPVMNGKSACSH"
     gene            13658..14773
                     /locus_tag="RJ259_000655"
     CDS             13658..14773
                     /locus_tag="RJ259_000655"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HDV7366392.1"
                     /translation="MSEMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSF
                     YPFKKIVVTSSNITYMKKFTKNYEFIEGGDTRAESLKKALELIDSEFVMVSDVARVLV
                     SKNLFDRLIENLDKADCITPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKAL
                     DQNLEFTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLDLPTPSFEIFTGNGFDV
                     HEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMK
                     FKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEF
                     RINVKATTTEKLGFIGRKEGMAVLSSVNLKYFDWTRL"
     gene            14770..15657
                     /locus_tag="RJ259_000656"
     CDS             14770..15657
                     /locus_tag="RJ259_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDV7366393.1"
                     /translation="MKVLIIENEIYLAQSISIKLSDAGYSCEIINSFDEYNGEKYYDI
                     ILLSTNTNNFLKAVGQFKHSIIILLISYISTDTVSNPLKLGASDYIQKPFMIEELIRK
                     IKHYQDFRKLSILNKAYQSYIKSRLETIKIPEYNYKKLKLPLILKSNKQSSADAFVFN
                     YANECDITLSFIDLTSTNSVEKVMKLPTENNLLFLSNFQALKAAEKEKLLDFIQNKNV
                     ILHTNSNTDDLKINCINLNDNEKNINSNEILTIDEYVKYVIINYQNIFPDTDLSKKLG
                     ISRKSLWEKRKKYEISKKK"
     gene            15635..16795
                     /locus_tag="RJ259_000657"
     CDS             15635..16795
                     /locus_tag="RJ259_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HDV7366394.1"
                     /translation="MKSARKNKNITIDQNEFGILSLIKEGLLGTCTHLMNEKEVNEII
                     KSGKFKGESFPYPLSFAPKNAEEALNDIKSGDRIDLMLDEKVVGHIDFKSQFKNNKNF
                     SDIFSPNTCSLEDMGTTCISGKIEIYNSQIEKIKENFQQIKNNLNAQKITAIVSSFDP
                     LHRAHERMFRWTIDKADLVVIFLVESFDVNGFEFELKEAYLKKFIQNYLPPDRIFIFP
                     LKNINIFHAHLNPGLESIIAKSLGCTKLVVGQNHTGLGMFYDDNQPKTILDDFSKDYG
                     IEVIVLPEFVFCDQCRMIVSTRSCPHGCHHHLHYNSQSLKDLLRAGIIPPAIFIRKEV
                     SSVILTSLFPNRLKNMQKIYNELFPTDGILEYKNDEEFYQKLLEIHQMSYMV"
     gene            16800..17300
                     /locus_tag="RJ259_000658"
     CDS             16800..17300
                     /locus_tag="RJ259_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HDV7366395.1"
                     /translation="MQKLFLTFFYSGSVKKASGTFGTIAALIPAFFILKYLGINTLFL
                     LSILIFVASIRVIDDYEKKTGIHDDKHIVIDEVAGVFLACAIAASVENSIVNFILAFV
                     LFRLFDITKPSIIGKIDKKVKGGLGVMLDDMLAGLFAGLLSAVIYGFLLKFNLVFWDI
                     NLKDLF"
     gene            17379..17642
                     /gene="rpsT"
                     /locus_tag="RJ259_000659"
     CDS             17379..17642
                     /gene="rpsT"
                     /locus_tag="RJ259_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HDV7366396.1"
                     /translation="MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGNK
                     NAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLALLVNKIA"
     gene            17661..18728
                     /gene="prfA"
                     /locus_tag="RJ259_000660"
     CDS             17661..18728
                     /gene="prfA"
                     /locus_tag="RJ259_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HDV7366397.1"
                     /translation="MLASKLDPFFKRFEELNSLLSSSDILNDISKMTTLSKEQKNLEP
                     IVLKAKEYLKTLDNIEENKALLNDPELGELAKEELKTLEELKPKLEEEIKILLLPKDP
                     NDERNIFLEIRAGTGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEII
                     MLVKGTGAYSRLKYEGGTHRVQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDL
                     KVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYE
                     MQESERLAKESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLF
                     DEIIEPLITHHQAQALQEQNL"
     gene            complement(18742..19497)
                     /locus_tag="RJ259_000661"
     CDS             complement(18742..19497)
                     /locus_tag="RJ259_000661"
                     /EC_number="1.14.14.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HDV7366398.1"
                     /translation="MNFESIISHMNDHHKSNLVDLCKKFGGIEQVQDVFLKSVDFNGL
                     DLVYNDKENLRVEFPKKADENTIKDAIISLCMSAKSEQNFSGVEKELNEFMLSFNSVA
                     LATLNANGEVVCSYAPFVSTQWGNYIYISEVSEHFNNIKVNPNNIEIMFLEDESKAVS
                     VILRKRLRYRVNASFLERGERFDQIYDEFEKQTGGEGGIKTIRKMLDFHLVKLEFKKG
                     RFVKGFGQAYDIENGNVAHVGASGNPHKFLHKH"
BASE COUNT         7259 a         2895 c         3321 g         6071 t
ORIGIN      
        1 ttagaagaaa aaaccacaag caaaaattca aatcaaaccc atataatctc acttaaacag
       61 tctgatgatg aatttttaaa tttattattt tcttttttag tgccacaaag cgatgaagat
      121 aagaatttta tagaaaaaac tcgcacaaaa atcaaaagaa atgagcataa tattgttctg
      181 ataaaaaatc caaattttaa tgctttaata gacacagggt ttttagatac tattgacaca
      241 ttaaaagaaa aattacatat ccataaaacc gattttaaag atatcactca tattatctta
      301 acacacgcac atcctgatca tataggtgct ttaatgagcg aagaaaatct ttttccaaaa
      361 gctcaaattt taattgataa aaaagaatat gatttttgga tcaaaagcga tagacaagaa
      421 attaaaaaca ccttgcttaa acttaaaaat atagaattta tcgatcattc caaagatttg
      481 atctttcaaa attcaggcat taaagccata cctgcttacg ggcatacccc aggtcaaaat
      541 gctatcataa ttgatgataa aatagtcttt tggggagatt tacttcatct ttatgatata
      601 caaatcccaa aacctaaaat cgctataaaa tttgatatag atcaaaatga ggctatacaa
      661 acaagggaaa aactacttaa agaatttaaa gaaagaaaac tcaaagttat agggactcat
      721 gtgcctttta tcaaacctaa atttttagat taattactta aaaattacta aaaattaagt
      781 aaaaatttta ataatttttg ctaaaattat agccttttta tttcatgaaa ggagaaaatt
      841 ttggcaaaag atgatgtaat tgaaattgat ggtaccgtac ttgaagcatt gcctaatgca
      901 aatttcaagg ttgaacttgg caacaaacat gtaattttat gtcatattgc aggaaaaatg
      961 cgtatgcatt atataagaat aatgccaggt gataaagtaa aagtagaact tacaccttat
     1021 agccttgata aagggcgtat aacttttaga tataaataat ctaagttatt taaaagctaa
     1081 ttttagataa aattagagtt tttgcgacaa attacatcga actatatgaa gaagtatttt
     1141 taaaatccac cacttatttt gaaaatagtt ggttattcat aaaacctgat gtagtcgtaa
     1201 atcaagtgga attcattcaa ggagacgctc atgaaagtga gaccatcggt taaaaagatg
     1261 tgcgacaaat gcaaagtagt tcgccgtaaa ggcgtggttc gcattatttg cgaaaatcca
     1321 aaacataaac aaagacaagg ataaacatgg ctcgtattgc aggtgtggat ttaccaaaga
     1381 aaaaaagaat tgagtatgga ctaacctata tttatggtat aggacttttc acttcaagaa
     1441 aaattctaga taaagtagga atttcttatg ataaaagagt tcatgagtta agtgaagatg
     1501 aagcagcagc tatccgtaaa gaaattcaag aaaactatat ggttgaaggg gatttgagaa
     1561 aacaagttgc tatggatatt aaagcactta tggatttagg aagctttaga ggtttaagac
     1621 acagaaaagg cttaccagtt cgcggacaaa aaacaaaaac aaacgcaaga actagaaaag
     1681 gtaagagaaa aactgttggt gcaaaatcat aaggataaat catggcaaaa agaaaaatcg
     1741 taaagaaaaa agtagttaaa aaaaatatag caaaaggtat tgtttatatc agtgcgactt
     1801 ttaacaatac tatggttaca gtaactgatg aaatgggaaa tgctatcgct tggagtagtg
     1861 caggtggttt aggatttaaa ggttctaaaa aatcaactcc ttatgcagca caacaagcag
     1921 tagaagacgc tttaaataaa gcaaaagaac acggaattaa agaagtaggc attaaagtac
     1981 aaggaccagg aagcggtaga gaaactgctg ttaagagtgt aggtgctatg gaaggaatca
     2041 aagtaacttt cttaaaagat atcactccat tagctcacaa tggttgcaga ccgcctaagc
     2101 gtcgtcgtgt ctaagatata agaaaaattt aggagaatat tatggcaaga tatagaggac
     2161 cagtagaaaa attagaaaga cgctttggtg ttagcttagc attaaaagga gaaagaagac
     2221 tagctggcaa aagtgcacta gataaacgcc cttatgcacc aggacaacac ggagcaagaa
     2281 aaggtaaaat tagtgagtat ggacttcaat taagagaaaa acaaaaagct aaatttatgt
     2341 atggagtaag cgaaaagcaa ttccgtcgtt tatttgctga agcagcaaga agagaaggaa
     2401 atacaggggt attacttatc caacttttag aacaaagatt agacaatata gtatatagaa
     2461 tgggttttgc tacaacacgt cgttttgcaa gacaacttgt aacacatgga catgttttag
     2521 taaatggtaa aagagtggat attcctagct ttagagtaga agcaggtgct aaaatcgaaa
     2581 ttatcgaaaa aagcaaaaac aatcctcaaa ttacaagagc tatcgaactt acagcacaaa
     2641 ctggaatcgt tgcttgggtt gatgttgaaa aagataagag atttggaatt ttcacaagaa
     2701 aacctgaaag agaagaagtt gtcattccgg ttgaggaaag atttatcgtt gagctttact
     2761 ctaaataata ggggctaaat atgagaaata ttacaacatc tgcttatacg ccaacagaat
     2821 ttacaataga aaacattagt gatactgtgg ctaaaatcag tgcttggcct tttgagatcg
     2881 gctatggaat caccctagcc catcctttac gccgtttact ttacactagc accataggat
     2941 atgctccaac tgcgattcat attgatggcg tagctcatga atttgatagc atgcgtggta
     3001 tgcttgaaga tgtagcactt tttatcatta atctaaaaaa actacgcttt aaaattaaag
     3061 gcgactcaaa taaagaaata gtagaattta gctttaaagg ctcaaaagaa atttacggca
     3121 aagatctaaa taatgatcaa gtagaagtag taaataaaga cgcctatcta gcaacaatca
     3181 acgaagatgc tgaactcaaa ttcacattga tcgttgaaaa aggtattggc tatgtaccaa
     3241 gcgaagaaat taaagagctt ataaatgatc ctaaatttat agctttagat gctttcttta
     3301 cacctgtaag agaagcaacc tatgatattg aaaaagtttt atttgaagat aatcctgatt
     3361 atgaaaaagt ggttttaacc gtaacaactg atggacaaat cactccaaat gaagcttttc
     3421 aaaatgctct agaagctatg tataaacaat tatcagtatt tgataaaatt accaatgtta
     3481 gaagtgtaat taaaaatcaa gcaacaagca atgaactaga aaatactaaa ttattgcaaa
     3541 acattacaga tttaaattta agtgctagaa gttataattg tcttgaaaaa gcaggagtgg
     3601 tttacatagg cgagcttgct ttgatgagtg taagtgaact tgcagggctt aaaaatttag
     3661 gtaaaaaatc tcttgatgaa attaaaaaca tcatggaaag cataggtttt cctgtgggaa
     3721 cttctaagct tagcgataat aaagaaatac ttaaaaataa aatcgcagaa ttaaaagcac
     3781 aaaacgaagg ataaagaatg agacataaac atggatatag aaaacttggc agaacttcat
     3841 ctcatcgtgc tgccttatta aaaaatttaa ctatagcttt agtaaatagc ggaaaaatcg
     3901 aaaccactct accaaaagct aaagaattaa gaggttatgt agaaagattg attactagag
     3961 caagacttgg agattttaac gctcatagag cagtttttgc ttcattacaa gataaaaacg
     4021 ctaccaataa actagtaact gaaattgctc caaaattcaa agatcgcaat ggcggatata
     4081 caagaatcat caaaacaaga attcgccgtg gtgatgccgc tgaaatggct ttcatcgaat
     4141 ttgtagctta atcaaatcct agcttttgct aggattaata cttcaattaa atatcctaaa
     4201 aataaaaagt tttaaataat tattttaaat aaaattaaat ttatttattt tctaaaaccc
     4261 ttgctaaaaa ttcaactact tatgctaata taagttttta atttttaatt tcaaggatat
     4321 gttatgcaag aaaacactcg tttacgcatt gcgatacaaa aatcaggtag actttcaaaa
     4381 gaatccatag agcttctttc agaatgtggt gttaaaatgc atatccatga acaaagcttg
     4441 atcgcttttt ctacaaattt acccatagat attttacgcg ttagagatga tgatatccct
     4501 gggcttattt ttgatggggt tgtagattta ggcattatag gggaaaatgt tttagaagaa
     4561 aatgaacttg aacgccagtc tttaggagaa aatccaagct ataagctttt aaaaaagcta
     4621 gattttggat attgccgtct ttctcttgcc ttacctcaag aaaataaatt tcaaaatttg
     4681 aaagattttg aaggcttaag gatagctact tcttatccac aacttttaaa gcgttttatg
     4741 aaagaaaatg ggattaatta taaaaattgt acgctcacag gttctgttga agtagcccct
     4801 agggcaaatt tagccgatgc gatttgcgat cttgtttcaa gcggggcaac tttacaagca
     4861 aacaatctta aagaagttaa agtcatttat gaatctcgtg cttgtttgat tcaaaaagaa
     4921 aatgctttaa gtaaagaaaa acaagcctta gtggataaaa ttatgttgcg tgtagcagga
     4981 gtaatgcaag caagagaatc taaatacatt atgcttcatg ctccaaaaga aaagcttgat
     5041 aaaattcaag ccctacttcc aggagttgaa agaccgacta tcttaccttt agcacacgat
     5101 gaaaaaaatg tagctttaca tatggtaagt aaagaaaatc ttttttggga aaccatggag
     5161 gctttaaaag aagaaggtgc gagttcgatt ttagttctgc ctatagaaaa aatgttaaag
     5221 tgagtaaaaa atgcaaattt tagtatatga taatttggat gaaaaacaaa aagaagaagc
     5281 gttaaaacgc cctgctataa gtgcgaaaga tgaaatttca aaaatagtaa gttctatcat
     5341 taaagaagtg caagaaaaag gcgataaagc tttgatagaa caagctttga aatttgataa
     5401 ggctgaaatt tcaaagatta aaatcactca agaagaaatc actcaagcaa gcaatcgttt
     5461 agataaagat ttacaagaag ctattttagt ggcttatgaa aatatcaaaa aatttcacga
     5521 agcccaaatc ccacatgaaa tcgctcttga aactacaaaa ggcgttaaat gtgaagtttt
     5581 aacacgccct atagaaaaag taggacttta cataccaggg ggtttggcac ctttgttttc
     5641 aacggtttta atgctagcta ttcctgcaaa aattgcaggt tgtgaaaaaa tcgttttagc
     5701 aagtcctgca aaaatcaatg atgctgtgct tttttgtgct aagctttgtg gcgtggatga
     5761 aatttatcaa atgggcggtg caggagctat agcagctttg acttacggta cccaaagtgt
     5821 tttaaaggtg gataaaattt ttggcccagg aaatgccttt gtaaccgaag caaaacgcca
     5881 agtaagtagt gatataaacg gagcagctat tgatatgcaa gcaggaccta gtgaagtttt
     5941 agtcatagct gatgatttag ctaatgaaaa atttgtagct agtgatttgc tttcacaagc
     6001 tgaacatggt gcagattctc aagtgatttt agtgtgttta agtcaagatt ttgctaaaaa
     6061 agcaagtgat gaagtccaaa gtcaattaga acttttgcct cgcaaagaac ttgcaagcaa
     6121 aagcattgct aattcacgca ttatcatagc taaagattta aatcaagcct tagaaatttc
     6181 aaatctttac gcccctgaac atttgatcat acaaactcaa aatccacgag aacttttaaa
     6241 aggtgtaaaa cacgcaggat cagtattttt aggagcttat tccccagagt ctatgggtga
     6301 ttatgcaagt gggacaaatc atgttttacc tacttatgga cttactaaaa cgcattctag
     6361 tttaggtttg gcagatttta gtaaaagaat gaccgttcaa gagttaagta aagaaggttt
     6421 tttagcttta ggtaaaagtg ttgaaatttt agcacaaaat gagcatttag acgcgcacaa
     6481 aaatgcagta acttttcgtt tagaaagctt aaaatgagtc aaaaaatcct ttttatagat
     6541 agagatggca ctttaataga ggagccaaaa agcgattttc aaatcgatac tcttgaaaaa
     6601 ttgcgttttg aaaaagatgc tattcccact cttttaaaac taaaaaaatt tggatttaaa
     6661 tttgttatgg taagcaatca agacggtctt ggaacaccaa gttttccaaa ggaaaatttt
     6721 gaaatcgctc atgaaaaaat gcttgatatt ttaaaaagtt gcggtataga atttcaagat
     6781 atttttattt gtccgcattt tgaaaatgaa aattgtgctt gcagaaaacc taaaaccgct
     6841 atgttagaag agtatatcaa acacgaactt tatgataagg aacaaagttt tgttatagga
     6901 gatcgtgaga gtgatatgat cttggcttca aatttaggcg tgcgtggttt aaaatacggc
     6961 gaactttctt ggaaagaaat agaaaatgaa attttaagtt cttttagaag cgcgagttat
     7021 caaagaacta ctaaagaaac agatataaaa gtaaaggtat gcttaaatgg gggtaaggtt
     7081 agcattaaaa caggtattga tttttttgat cacatgttag agcaaatcgc tgtacatgga
     7141 ggtatagggc ttgaaatttc ttgtaaagga gatttggaaa tcgatgagca tcatagcgtt
     7201 gaagatgtag ccttagcact tggagcttgt atcaaaaaag ctttagggga taaaatcggc
     7261 attgcaagat atggttttgc tttacctatg gatgagtgtt tggcaagttg tgcaatggat
     7321 ttttgcaatc gtccccattt agtctataaa gccaaattta aaaaatctca tttaggggct
     7381 ttaagcacag aaatgatcga gcactttttt tattctttaa gctatgctat gggcgtgagt
     7441 ttgcatttaa aagttaaagg caaaaacgat catcataaag ccgaagggct ttttaaagcc
     7501 tttgcaaaag ctttgaaaat ggcagtaaaa atagaaagtg aaaatttagc cagctctaaa
     7561 ggagtgatat gaaaatcatc atcatcgata cagcctgtgc gaatttagca tctttgaaat
     7621 tttgtctaga tagattaggt tttaatgcaa ctatcagtag ggatttaaaa gagcttgaaa
     7681 gtgcggataa gcttttttta cctggagtgg gtaccgcaaa agaagcaatg aaaaatttag
     7741 aacaatttaa tcttattgat tttattcaaa ataccaaaaa acctttgctt ggtatttgtt
     7801 taggtatgca aattttagga aatttttctg aagaattaaa tcaagaaacc ttaaaactca
     7861 tagattttac aactcaaaaa tttaaagcta aagaaggctt tacttttcca catatgggat
     7921 ggaatgaagt ttatagctct catgctttgt ttaaaggctt agaaggggct tatttttatt
     7981 ttgtgcatag ttattgtgta ggacttggga aatacactat agcagattgt gagtattcgc
     8041 aaaaatttag cgcaagcgta atgaaagata atttttacgg agtgcaattt caccctgaaa
     8101 gaagtagcga ggctggggaa attttaattt caaattttat taaggatata ggatgactca
     8161 aatcataccc gcactcgatc ttatagatgg cgaagtggtg cgtcttgtaa aaggggatta
     8221 cgaacaaaaa aaagtatata aatacaatcc cttaaagaaa tttaaagaat acgaaaaagc
     8281 aggagcgaaa gaacttcatc ttgtagatct tacaggtgca aaagatccta gcaaaagaca
     8341 atttgctttg atagaaaaat taaccaaaga agtcagtgtc aatttgcaag taggtggagg
     8401 tatacgctct aaagaagaag ttaaagcttt gcttgattgt ggagtaaaaa gagtagttat
     8461 aggatctatg gcaattaaag atgcgacttt atgtcttgaa attttaaaag aatttggtag
     8521 tgaagctata gttttagcct tagatacgat tttaaaagaa gattatgttg tggctgtaaa
     8581 tgcttggcaa gaagcaagcg ataaaaagct tatggaagtt ttagattttt atagcaataa
     8641 aggcttaaaa cacatacttt gcacagatat ttcaaaagat ggtaccatgc aaggagtaaa
     8701 tgtaagactt tacaaactta tccatgaaat ttttcctaat atttgcattc aggcaagtgg
     8761 tggagtagcg agcttaaaag accttgaaaa cttaaaagga atttgtagtg gggttatcgt
     8821 aggaaaagct ttattagacg gagtttttag cgtagaagaa gggataagat gtctagcaaa
     8881 ttaagctaca aagaacttac tttagaaatt ttaaaacaaa gtgacagacc tttaagtgtt
     8941 aatgaaattt ggcaaaaagc tcttgaacaa ggcttagata aaaagctttc tagcatagga
     9001 caaactccaa ttgctacttt aggggctagg atatatgttg atataaaaga attgcaacac
     9061 aattctttgt ttatcaaagc ttcccaaaaa cctacaactt tttggctaaa agaaagagaa
     9121 aatgaacttt taaagcttga taataaaaat gaaattacta acgaaaaaca agaaaaaaat
     9181 aaatttcatg aaagagattt acaccccttg cttgtaaaat ttttatatga aaatttagat
     9241 tttaatttaa attgcaaaac aatttaccat gaacaaagca aaaagggtaa aggcggggaa
     9301 gataagtgga attatcctga tattgtaggg gtttattttc cttatgatga ttatgaaaaa
     9361 gagaccataa cacttttaga aaatatcaaa caaaatagtt ataagctttt ttcttttgaa
     9421 cttaaaattg ctttaaattt ttcaaattta aaagaatgct attttcaagc tgtaagcaat
     9481 tctagctggg caaatgaagg ctatttggtt gttttacaag aaattgatag cgaagtttta
     9541 agtgagttaa gacgcttaaa tcaaagtttt ggcataggag tgataaaact tgaaaaagat
     9601 atttcaaatt ctcaaatttt aattagtgca aaagaaaaag aacttgatat tcaaacacta
     9661 aatatgctga tcaataaaaa tccaaatttt aaagaattta ttgatgatat aaacaaacaa
     9721 attaaagtgg gcaaagaagc aaaaattcaa gctaattttg atgaaattaa aagcgatgaa
     9781 gaaatggaaa aatatcttaa agaaaaatgt attttggaga aataaatgct tacaaaacgc
     9841 ataattgcat gtttagatgt caaagatggc agagtagtaa aaggaacaca atttaaaaac
     9901 cataaagata tgggagatat catagagctt gctaggtatt attctcaaaa tggtattgat
     9961 gagcttgttt tttatgatat tgctgcaagt gctagaaaag aacgcatatc aagagaatgg
    10021 gtaagtgaag tagcaaaaaa tatcaatatt tctttttgtg ttgcaggggg tattaaaagc
    10081 gaagaagatg cagctgaact tttggctaat ggggcagata aaatttctat caattctcct
    10141 gctttaaatg atccaagcct aatcacacgc cttgctaaaa gctttggcgt gcaatgcgta
    10201 gtagtaggga ttgatagttt taaagatgaa aatggaaatt taaaagtatt tcaatacaca
    10261 ggggatgaaa aaacaagtaa acatagtgga aaaagcactt tagaatgggt taaaaaagtg
    10321 caagatctag gtgcaggcga aattgtttta aatatgatga atcaagatgg tgttaaaaat
    10381 ggctatgatt tagaacaatt agaagctgta tataaaattt gtaaagtacc tttaatcgca
    10441 agtgggggag cgggaaaaat ggaacatttt ttagaagctt ttaaactagg tatagatggg
    10501 gctttagctg cttctgtttt tcatcaaaaa cttatagaca ttaaagaatt aaaaatttat
    10561 cttaaaaatc aaggcttaag tataaggata taatatgcaa aatttcaaag aacttaatga
    10621 aaaaatcgct tggcaaaaag tggataatct tttacctgtc atcatccaag atgcaaaaac
    10681 ttgcgaagtt ttaatgctag gctttatgaa taatgaagcc ttagaaaaaa gcttagaaag
    10741 tggcaaagta gtcttttttt cacgcacaaa acagcgtctt tggatgaagg gtgaagaaag
    10801 tggaaatttc ttaaatatca tagatttaag cttagattgt gataatgaca cgcttttaat
    10861 tttagcaaat cctgtagggc ctacttgtca tacgggcgat atttcttgtt ttgaaaaaat
    10921 ttctaaaaat gcagattttg tttttctagc cagacttgaa aaacttatta atgcacgcaa
    10981 aaatgccgat gaaaatactt cttatacagc aaaacttttc aaaagtggta caaaacgcat
    11041 cgcacaaaaa gttggtgaag aaggcgtaga aacagcttta gcagcgacag taaaagataa
    11101 agaagagctt atttgtgaag cagcggattt aatgtatcat ttaagtgttt tacttgcaga
    11161 tgcaaatctt agtttctcag atgtgatttc aaaattaaaa gaaagacata aagcttaaag
    11221 ctttatgtaa aataaattta tatcaatgca aggcttcatt aagtttgact gcttttttat
    11281 ttaaagctac tatcatagca ccacttatag aatcttgacg gaaatgtagc ccatttaaac
    11341 ctttaagctc taagcctttg taaatttctt tatcaaaatt aaaataagga ttaagtttag
    11401 caagttcttc ggcatctttg agtaaaaatt tcgttccttc tagcactgca atacctgcat
    11461 caactataca attatcccct aaaggaattc ctgtcactga attagcccct aaaagacaag
    11521 ccttgcctac gcttatagca ttgccacttg ttccacttaa aacacctaaa atcgaagctc
    11581 cgccacctac atcagaacct tctcctacta tagcacttga actaatacgc ccttcaacca
    11641 tacaagctcc tgttgtacct gcattaaaat tcacataact tgcccctggc atgatggttg
    11701 ttcctgctgc taaagacgca cccattctta ctttagaact ttctaaaatt cttgtattat
    11761 cctcagggat aatatgtgct aaaaatcttg ggaatttatc aacaaaatcg atttttggat
    11821 attgattgct catttttaaa cgcatttcat ttgctcttaa atactcaagc tcgataggct
    11881 tatcatcact ccaagctaca ttgcttaaaa gtccaaaagc tccatttaaa ttgatacttc
    11941 ttaaaggtac ttttttagta gaaagcaaat aaagttttag ataaatactt tctacactta
    12001 aaggttcttt atcttcaaaa agacaaacaa aagaaaattc atcgtcttta aatttatctt
    12061 tgataatctt taataaatca atattttgat gcccatcttc ttctaaaaaa ggtttaaaac
    12121 aagaaagtgc aaaatcaata tcttctaatt tcaaagtttg cacaaactca ctcgcattaa
    12181 aatcaatctc cacgcccctt tgcataaaag cttcaagcat gattgccgct gagccaaaat
    12241 tttgctcata gttaatcaaa gcaaaacttg cttgtaagat tttattttta tttaactgtc
    12301 ctctatcaag ccttgctata ccaaaagctt taggtttttt atagccactt ttttgctcga
    12361 tttgtttgat taaaagtaaa aaatcttctt tagtattaat cattttcttt tccttatcca
    12421 cttaattttt aatgcgaaca cgcacttttt ccattcatca caggttgtat agcagaatta
    12481 tccgcaccac cttcattgtt aattttttct ataaagctcc aaattttttc agccgccatt
    12541 aaataacgct ttgaactcac actttcaggg tgataaaaac tcacaggctt gccttcatct
    12601 ccaccttctc ttactatcat ttctatagga atttgtgcta agacttcact tttataggct
    12661 tttgccatat cctcagccgt tcctttgcca aaaatatcat actctttacc gttatcagga
    12721 cataaaaatc cactcatatt ttcaatcaca cccgctatag gaatgtgaag tttattaaac
    12781 atatctaaag ctcttttact atcgtctaaa gatacggttt gaggcgtact tacacaaact
    12841 cctgcagcaa taggaatgct ttgtgcagaa gtaatttgcg catcgcctgt tcctggaggc
    12901 atatccaaaa acaatacatc aagctcaggc caaattacat cagctaaaag ttgctcaatt
    12961 gctttcatga tcatagctcc acgccacata aggccttgac cctcttcgat caaaaccccc
    13021 atactcatca tataaacacc atgagttaaa ataggcttta atctctgccc tactacttca
    13081 ggctgagttt tggtttcacc tagcattctt ggaatatttg gcccataaat atccgcgtct
    13141 aaaataccta ctctttttcc cattttagcc atggaaattg ctaaatttac tgtagttgta
    13201 gatttaccca caccaccttt tccacttgaa accatgatga aattttttac ttgtggagcg
    13261 atattttttc cacttcttga attacttttt tcttcaggaa tttttggagt aatgatatta
    13321 agttcaatat tttttaaagc caaactcgat aaagcttcaa tagtattttt acgaatttca
    13381 ttagctactt caggatttgc tgaaacgatt tctatatcaa tgaatacacc atcatcttga
    13441 attttaatat cttttacaaa gttaaaactc actatatcct tttcaaaacc aggatatttt
    13501 acagttttta atttctctaa aatttgttct ttcatatttt ttccttgtct tttaaaaaaa
    13561 tcaattttac taataaaatg ataaaattta gctttttata agtgtataat atggtaacat
    13621 tataaaaacc aacaatatta aaaagaggaa tgaaaaaatg agtgaaatga gcctcattat
    13681 gttagcagct ggaaattcta ctcgttttaa tacaaaggta aaaaaacaat ttttacgact
    13741 tggaaatgac cctctttggc tttatgcaac aaaaaattta agctcttttt atccttttaa
    13801 aaaaatagtt gttacctcta gtaatatcac ttatatgaaa aaatttacca aaaactatga
    13861 attcatagaa ggtggtgata ccagagcaga atccttaaaa aaagccttag agctcataga
    13921 tagcgaattt gttatggtaa gtgatgtagc aagggtattg gtgagtaaaa atttgtttga
    13981 tcgtttgatt gaaaatttag ataaagcaga ttgtattacc cctgctttaa aagttgcaga
    14041 tacaacactt tttgacaatg aagccttgca aagagaaaaa atcaaactca ttcaaacccc
    14101 gcaaatttct aaaaccaaat tgcttaaaaa agccttggat caaaacctag aatttacaga
    14161 tgatagcaca gctatagctg caatgggtgg aaaaatttgg tttgttgaag gtgaagaaaa
    14221 tgcaagaaaa ctaaccttta aagaagatct taaaaaactt gatttgccta cacctagctt
    14281 tgaaattttt actggcaatg gttttgatgt gcatgaattt ggagagaatc gccctttgct
    14341 tttagcagga gtgcaaattc atcctactat ggggcttaaa gcacacagcg atggagatgt
    14401 tttagctcac tctttaaccg atgcgatttt aggtgctgca ggacttggag atataggaga
    14461 gctttatcct gatactgata tgaaatttaa aaatgccaac tccatggagc ttttaaaaca
    14521 agcttatgat aaagtcagag aaataggttt tgaactcatt aatatagaca tttgcgtcat
    14581 ggcacaaagc cctaaactta aagactttaa acaagctatg caaagcaata tagctcatac
    14641 tttagattta gatgaattta gaatcaatgt taaagccaca acaacggaaa aattgggttt
    14701 tattggaaga aaagaaggta tggcggtgct tagtagtgta aatttaaaat attttgattg
    14761 gacaagatta tgaaagtttt aattattgaa aatgaaattt atctagcgca aagcattagc
    14821 attaaactaa gtgatgctgg atatagctgt gaaattatta actcgtttga tgaatacaat
    14881 ggtgaaaaat actatgacat tatactgctt tctacaaata ctaataattt tctaaaagcc
    14941 gtaggtcagt ttaaacatag tattattatt ttgcttattt cttatataag tacagataca
    15001 gtttcaaatc ctttgaaatt aggtgctagt gattatattc aaaaaccctt tatgatagaa
    15061 gagctgatta gaaaaataaa gcattatcag gattttagaa aactttcaat ccttaataaa
    15121 gcttatcaaa gctatatcaa atcaagatta gaaacaatca aaattccaga gtataattat
    15181 aaaaaattaa aacttccatt gatattaaaa tccaacaagc aaagcagtgc tgatgctttt
    15241 gtttttaatt atgcaaatga atgtgacatt actctttctt ttattgattt aacatctaca
    15301 aattcagttg aaaaagttat gaaacttccc acagaaaaca atcttttatt tttgagtaat
    15361 tttcaagcat taaaagcagc agaaaaggaa aaactcctag attttataca aaacaaaaat
    15421 gttattttgc ataccaattc aaatacagat gatttaaaaa taaactgcat taatttaaat
    15481 gataatgaaa aaaatatcaa tagcaatgaa attttaacta tagatgagta tgtaaaatat
    15541 gttattataa attaccaaaa tatatttcct gatactgatc tttcaaaaaa attaggcatt
    15601 tcacgtaaat ctttatggga aaaaaggaag aaatatgaaa tcagcaagaa aaaataaaaa
    15661 cattaccata gatcaaaatg aatttggcat cttatcactt attaaagaag gtttgctagg
    15721 cacttgcact catttaatga atgaaaaaga agtcaatgaa atcattaaat caggaaaatt
    15781 taaaggagaa agctttccct atcccttaag ctttgcacca aaaaatgccg aagaagcact
    15841 aaatgatata aaatctggcg atagaatcga tctcatgcta gatgaaaaag tagtaggaca
    15901 tatagatttt aaaagccaat ttaaaaataa taaaaatttt tctgatattt tcagtcctaa
    15961 cacttgctct ttagaagaca tgggaacaac ttgcataagt ggaaaaatag aaatttataa
    16021 ttctcaaatt gaaaaaataa aagaaaattt tcaacaaatc aaaaacaatc ttaatgcaca
    16081 aaaaattact gctatagttt caagttttga tcctttgcat cgtgcccatg aaagaatgtt
    16141 tcgttggact attgataaag cagatttagt tgtaattttt cttgtagaat cttttgatgt
    16201 aaatgggttt gaattcgaac ttaaagaagc atatttgaaa aaatttattc aaaactatct
    16261 tccaccggat agaattttca tttttccatt aaaaaatatt aatatttttc acgctcattt
    16321 aaatcctggc ttagaaagta ttatcgcaaa aagtctaggt tgtaccaaac tagtagtagg
    16381 acaaaatcat acaggacttg gaatgtttta tgatgataac caaccaaaaa ccatacttga
    16441 tgatttttcc aaggactatg gcatagaagt gatcgttttg cctgaatttg tattttgcga
    16501 tcaatgtcgc atgattgtta gcacaagatc ttgccctcat ggttgtcatc accatttgca
    16561 ctataattct cagtctttaa aagatttact aagagcgggt atcattcctc cagcaatttt
    16621 catacgcaag gaagtatcta gtgttatttt aacttctctt tttccaaata gattaaaaaa
    16681 tatgcaaaaa atttataatg agctttttcc aactgatgga attttagaat acaaaaatga
    16741 tgaagaattt tatcaaaaac ttttagaaat tcatcaaatg tcttatatgg tgtaataaaa
    16801 tgcaaaaatt atttttaact tttttttatt caggttctgt aaaaaaggca agtgggactt
    16861 ttggtactat cgctgcttta atacctgctt tttttatact taaatatctc gggattaata
    16921 ctttgttttt actaagcatt ttaatttttg ttgcaagtat tcgtgttata gatgattatg
    16981 aaaaaaaaac aggaattcac gatgacaaac acatagttat cgatgaggtt gctggagttt
    17041 ttcttgcttg tgctattgca gcaagtgttg aaaactcgat agtcaatttt attttggctt
    17101 ttgttttatt cagactcttt gacattacaa aaccttctat tattggtaag atagataaaa
    17161 aagtcaaagg cggactaggt gtaatgcttg atgatatgtt agcaggattg tttgctggac
    17221 ttttaagtgc ggtaatttat ggatttttac ttaaatttaa tttagttttt tgggatataa
    17281 atttaaaaga tttattttga aattttgctt aaattaatta aattttaaat tttattctta
    17341 tataatttag tctttaattt caaaaaagga aaatataaat ggcaaaccat aaatctgctg
    17401 aaaaaagagc aagacaaact attaaaaaaa cagaaagaaa tagattctat agaacaagac
    17461 ttaaaaatat aactaaagcc gtaagagaag ctgcagcaaa tggaaataaa aatgctgcta
    17521 atgaagcttt aaaagtagct aataaaagca ttcatgctat ggtaagtcgc ggtttcatta
    17581 aaaaacaaac tgcttctcgc cgtgtaagcc gcttagccct tttagtaaat aaaatcgcat
    17641 aattttctat atagttttta atgttagcta gcaaactaga tccttttttt aaacgctttg
    17701 aagagttaaa ttctcttctt agcagttctg atatactcaa cgatatcagt aaaatgacta
    17761 cactctctaa agaacaaaaa aatttagaac ctatcgtttt aaaagctaaa gagtatttaa
    17821 aaactttaga caatatagaa gaaaataaag ctttgctaaa cgatccagaa cttggggaac
    17881 ttgcaaaaga agaactaaaa actttagaag aattaaaacc gaaacttgaa gaagagatta
    17941 aaattttact tcttcctaaa gatcccaatg atgaaagaaa tatttttctt gaaattcgtg
    18001 caggcacagg tggcgatgag gcatctttat ttgtgggaga tcttgtaaaa gcttatgcaa
    18061 gatatgctga aaatcgcggc tataaacttg agattgtaag ctctagtgaa ggaagcgtag
    18121 gtggatttaa agaaatcatc atgcttgtta aaggaacagg ggcttattca agacttaaat
    18181 atgaaggtgg aacgcaccgt gttcaaagag ttcctcaaac agaatcccaa ggacgcgtgc
    18241 atacttctgc tatcaccgtg gcagtaatgc cagaagttga tgatatagaa atcgaaatca
    18301 atccaaacga tcttaaagtt gatgttatgc gatcttcagg acatggtgga caaagtgtaa
    18361 atactactga ttcagctgtt cgtatcactc atatccctac aggtatagtt gtagtcaatc
    18421 aagatggaaa aagccaacac aaaaataaag aaagtgcgat gaaagtccta aaagcaaggc
    18481 tttatgaaat gcaagagagt gaaagactag caaaagaaag tgaagcaaga aaatcacaag
    18541 taggaagcgg agatagaagc gaacgcattc gcacttacaa ttttccacaa aatcgtatca
    18601 gcgatcatag aataaatctt actttatatc gcttagatgc cattatgcaa gatgggcttt
    18661 ttgatgaaat catagaacct ttaatcactc atcatcaagc ccaagcttta caagaacaaa
    18721 atttataaga ttttatataa attaatgctt atgtaggaat ttatgtggat ttccactagc
    18781 acctacatgt gcaacatttc cattttctat atcataagct tgaccaaaac cttttacaaa
    18841 gcgtcctttt ttaaattcaa gctttactag atgaaaatca agcatcttgc gtatagtttt
    18901 aatgcctcct tctcctccgg tttgtttttc aaactcatca taaatttgat caaatctttc
    18961 acctctctct aaaaagcttg catttactct atagcgcaat cttttacgaa gtataacaga
    19021 aacagcttta ctctcatcct ctaaaaacat tatttctata ttgtttggat ttactttgat
    19081 gttgttaaaa tgttcactta cttcacttat ataaatataa tttccccatt gtgtgcttac
    19141 aaaaggtgca tacgagcaaa caacttctcc atttgcattt aaagttgcca aagctacaga
    19201 attaaaactt agcataaatt catttaattc tttttctaca ccactaaaat tttgctcgct
    19261 ctttgcactc atgcaaaggg atattatagc atctttaatc gtgttttcat cggctttttt
    19321 aggaaattcc actcgtaaat tttctttatc attgtaaaca agatctaagc cattaaaatc
    19381 aacacttttt agaaaaacat cttgtacttg ctcaatacca ccaaattttt tacaaagatc
    19441 gactaaattt gatttatgat gatcattcat atgagaaata atgctttcaa aattcatttt
    19501 tatcctttct tgattttaaa ataaaatatt aaaaaaaatg gtatca
//
LOCUS       DAPIWJ010000024        18369 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.024, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000024 DAPIWJ010000000
VERSION     DAPIWJ010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18369)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18369)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18369
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.024"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            60..1428
                     /locus_tag="RJ259_000662"
                     /pseudo
     CDS             60..1428
                     /locus_tag="RJ259_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006639.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            1570..2322
                     /gene="peb3"
                     /locus_tag="RJ259_000663"
     CDS             1570..2322
                     /gene="peb3"
                     /locus_tag="RJ259_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family glycoprotein adhesin PEB3"
                     /protein_id="HDV7366399.1"
                     /translation="MKKIITLFGACALAFSIANADVNLYGPGGPHTALKDIANKYSEK
                     TGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREA
                     IILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNF
                     RNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVI
                     AKEGASKETQDFIAYLSSKEAKEIFKKYGWRE"
     gene            2419..3513
                     /locus_tag="RJ259_000664"
     CDS             2419..3513
                     /locus_tag="RJ259_000664"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HDV7366400.1"
                     /translation="MKTFLVCALEPSANLHLKEVLKAYKKDFGEFELHGIYDESLCKE
                     FDLNSKPLYSSHEFSAMGFIEVLPLIFKAKKAIKELANLSFTQKINGILCIDSPAFNI
                     PFAKALKKAGSKIPRIYYILPQVWAWKKGRIPIIESHFDILASILPFDNQFFNKSTYI
                     GHPLLDEIKEFKNQEDINHTFSKKDDEKTIAFLPGSRRSEIRRLMPIFKELSQKFKGK
                     KILCVPSFNLEKLEVYGDISEFKIESNTPKVLKKADFAFICSGTATLEAALVGTPFVL
                     AYKAKAIDIFIAKLFVKLKHIGLANIFCDFAGKEALNPEFLQDKVNVLNLYEAYNKYD
                     YKAFFAKVDFLKEYLQFGSAKNLAKILNEI"
     gene            3525..4010
                     /gene="greA"
                     /locus_tag="RJ259_000665"
     CDS             3525..4010
                     /gene="greA"
                     /locus_tag="RJ259_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HDV7366401.1"
                     /translation="MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKE
                     NAEYHAAREKQALIESRIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKES
                     KYTLVGICEGNLDKGYISIASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINYEPLK
                     F"
     gene            4161..4778
                     /locus_tag="RJ259_000666"
     CDS             4161..4778
                     /locus_tag="RJ259_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HDV7366402.1"
                     /translation="MLIGEISATHEFAKPYIELLEELALKIEIIYLEGNHDFNLSCFF
                     KRVKIFNLQEQPIKLNLHTSKGNNLVLNSAFIKLAHGDIFLPPLLQFTLKTLRNHYLL
                     VFLNFLNIITRNFISNKILQNQNKKNLFYQIKDFENLAKKRYEKYENLGFWVCEGHYH
                     QNHQINKENIKYLNLASFAYERSFFVVEYQQEIKFREQKLRGQNV"
     gene            4771..5727
                     /locus_tag="RJ259_000667"
     CDS             4771..5727
                     /locus_tag="RJ259_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HDV7366403.1"
                     /translation="MFDENIVKTGSNEMELVDFRIFKQGHDKVYEGIYGVNVSKVREI
                     IKIPSLTELPGVPDYIEGIFDLRGVVIPVVNLAKWMQITEPESTMLKPRVIITEFSNI
                     LIGFIVHEAKRIRRINWKDIEPATFSTGSGALDKGKITGVTRIENDEVLLILDLESVV
                     EDLGIYAPKTDIDFGKIEKFTGTALILDDSMTARKRVKEMMQQMGFQVVEAKDGVEGI
                     NKLEELSQIYGESLNDTLKIIVSDVEMPQMDGFHFAARIKEDPRFKDIPIVFNSSLSN
                     EFMNEKGVQEAGGEGYLVKFNASDFFNEIAKVIKKHQSQEQG"
     gene            5731..8040
                     /locus_tag="RJ259_000668"
     CDS             5731..8040
                     /locus_tag="RJ259_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDV7366404.1"
                     /translation="MEDMQEILEDFLVEAFELVEQIDHDLVELESNPEDLELLNRIFR
                     VAHTVKGSSSFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLN
                     SIRDNGNDTAIGMDIEPICARLTAISEGESPVVATDSNEKSIPQAELEAPKQEIATPE
                     PEVDVNQLSDSEVEAEIERLLKVRKAEDQARRAQKKQTTNAAPKPTNNTANKPTESGE
                     KKVPASGSNASSMDQTIRVEVKRLDHLMNLIGELVLGKNRLLKIYDDVEERYEGEKFL
                     EELNQVVSQLSIITTDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGE
                     ETELDKSIVEEIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNEGNHIVV
                     EITDDGKGLDPNGLKAKAIEKNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGR
                     GVGMDVVKTNIEKLNGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLA
                     SVLETVRVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVA
                     ESKLGIIVDTLVGQEEIVIKSMGDYLQNIQGIAGATIRGDGRVTLIIDVGAMMDMAKE
                     IKVDIKAQLESSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEA
                     LNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRG
                     VEVGMTEYITKPYSPEYLENVVRKNLKLG"
     gene            8045..8566
                     /locus_tag="RJ259_000669"
     CDS             8045..8566
                     /locus_tag="RJ259_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-binding chemotaxis protein CheW"
                     /protein_id="HDV7366405.1"
                     /translation="MSNEKLEQILQKQQTQMAGPDVDQREDDIIQLVGFVVGDEEYAI
                     PILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFHLGSSKMTPQTRYI
                     VLRGETNGTGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVKDKGMIYGIGKRDENIL
                     TILKVEALLKREF"
     gene            8566..9189
                     /gene="serB"
                     /locus_tag="RJ259_000670"
     CDS             8566..9189
                     /gene="serB"
                     /locus_tag="RJ259_000670"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HDV7366406.1"
                     /translation="MIKLCVFDFDATLMDGETIDILATAHGKGNQTSEITRHAMTGEL
                     DFFESLQKRVSFLKGMSYKKVLELSSTLPLMRGAHELIQYLKSKNIQIVIFSGGFHEG
                     INPAMQKLGINLGFANYLHHKNDILTGLVGGEMMFSNSKGLMLQRLKSFLNLKTDEVM
                     CVGDGANDLAMFNESGLKIAFCAKEILRSQADICIDIKDLKEIIKVI"
     gene            9189..10166
                     /locus_tag="RJ259_000671"
     CDS             9189..10166
                     /locus_tag="RJ259_000671"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HDV7366407.1"
                     /translation="MKNFSLWCDFIENSFLDNEFLNLLSHGINGATSNPAIFKNAILN
                     SPIYKDKILKLKEKKTKDIYEELAISDIQKAADKLAPLFYQKNDGFISIEIDPRLHDN
                     TTLSLGEAKRLYSAIGKENIMIKIPATKASYEVMYELMKNGISVNATLIFSLEQSQKC
                     FEALNAGLVEFRKNNIALKEQNTRTPQAVISIFVSRFDRLLNPKAKEQNRIGILNANL
                     AYNNIYSKNEPNIRALFASTGVKGDDLPKDYYIKELLFENSVNTAPLDAIEAFKGKMH
                     FKKPLMNFEIYTELNQIISQSEREKACNDLLSDGLEQFCIAFEDILKAL"
     gene            complement(10167..10589)
                     /locus_tag="RJ259_000672"
     CDS             complement(10167..10589)
                     /locus_tag="RJ259_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5 YciO YrdC YwlC family protein"
                     /protein_id="HDV7366408.1"
                     /translation="MIYLAQTDTTVGFLSKNLEEINALKGRDKNQPCLITSAKFCELK
                     SLARIPKSFKNLVRRSKKTTFIYPNNQAIRIVKECKHANFLSKNGYFYSSSANKHGKE
                     FDEEWARSVADIILDEKFFENIPSKILKLSKNKMIKIR"
     gene            complement(10586..13855)
                     /gene="carB"
                     /locus_tag="RJ259_000673"
     CDS             complement(10586..13855)
                     /gene="carB"
                     /locus_tag="RJ259_000673"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HDV7366409.1"
                     /translation="MPKRTDIKSILLIGSGPIVIGQACEFDYSGTQAAKTLKELGYRV
                     VLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILPTMGGQVALNVAMEV
                     YESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAYNYDEALKAVDEI
                     GFPLMIRASYTLGGAGSGVVYNMDEFKELTNTALALSPIHEILIEESLLGWKEYEMEV
                     IRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFAILREIGVD
                     TGGSNVQFAINPKNGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAVGFSLDEIK
                     NDITGTPASFEPVIDYIVTKIPRFTFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQ
                     KALCSLERSLSGFDRVKFEERNDLVFKIRNANEKRLLYVAQAFREGFSVEELYELCKI
                     DPWFLTQIKEIVDFEEQIDMDILNNKALLRKAKTMGFSDKMIALLVNLKDNLELSQND
                     IYYVRMKQKIIAEFSEVDTCAGEFEALTPYLYSSINVSELTQSKNDAKDKKEKKVMII
                     GGGPNRIGQGIEFDYACVHASFALKDMGIKTIMYNCNPETVSTDYDTSDILYFEPIDF
                     EHLRAVIEREKPDGVIVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAEDRKKFAEF
                     ITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAELRLYMQ
                     EAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSGDSACSLP
                     PCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFALHNNELYMIEVNPRASRTIPFVSK
                     ATGIPLAKVATRVMWQGNLKEALKFYDTFKVVNFDTKILRPKTPKYMSVKEAVFPFAK
                     LSGSDLELGPEMRSTGEVMGISKDFANSYAKSQIASFNHLPEQGVVFISLKDKDKKYT
                     KKIAAEYVKLGFKLMATGGTCKEILESGFECELVHKISEGRPNVEDKLKNGEIHLVIN
                     TSDSHSFKGDTKKIRENIIRFKIPYFTNLRSALAGAKSIKAIQSKSCLDVKSLQEWLK
                     S"
     gene            complement(14116..14865)
                     /gene="mreC"
                     /locus_tag="RJ259_000674"
     CDS             complement(14116..14865)
                     /gene="mreC"
                     /locus_tag="RJ259_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HDV7366410.1"
                     /translation="MKNKIFYVLVLAFLVFISFYYGGLIKQNVLRVNDFVIGNFYNIK
                     DYLGEKISEHFNQANQIQQLKARNKELEDIAVKVTSFANQLNRILEDQNSTKYLPQVS
                     LTRVISYVQLNDYKKLWLDWSKIPVGKNRGLIYQGYTAGIAINKNGRAMALLQGDDQC
                     VFSVYIGKSKAPGLIQGEDGRIVVKFIPKWAKINTGDEILTSGLDNIFFSDIPVGIVN
                     RVNDEDMYQSVEVKPYVKISIPAYLYVVDNL"
     gene            complement(14855..15895)
                     /locus_tag="RJ259_000675"
     CDS             complement(14855..15895)
                     /locus_tag="RJ259_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HDV7366411.1"
                     /translation="MILDQLIGFFSSDMGIDLGTANTLVLVKDKGIVINEPSVVAVER
                     ERYGSKAKILAVGKEAKDMVGKTPGNIEAIRPMKDGVIADFDMTEKMIRYFIEKTHRR
                     KSFLRPRIIISVPYGLTQVERKAVRESALSAGAREVFLIEEPMAAAIGASLPIQEPKG
                     NLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNLIIGERTGEEI
                     KITIGSAIQLPKELSMVVKGRDQVSGLLSRIELTSEDVREAMREYLKEIADALKMVLE
                     MMPPDLASDIVENGVVLTGGGALIRGLDKYLSEIVRLPVYIADEPLLAVAKGTGKALE
                     EISLLQQLTNEE"
     gene            complement(15907..17130)
                     /gene="clpX"
                     /locus_tag="RJ259_000676"
     CDS             complement(15907..17130)
                     /gene="clpX"
                     /locus_tag="RJ259_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HDV7366412.1"
                     /translation="MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEE
                     KEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQD
                     DDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILT
                     RLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVN
                     IPPRGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA
                     LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAI
                     DGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKDYDIVITKEV
                     VKDNAKALLIKRKIS"
     gene            complement(17123..17914)
                     /gene="lpxA"
                     /locus_tag="RJ259_000677"
     CDS             complement(17123..17914)
                     /gene="lpxA"
                     /locus_tag="RJ259_000677"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HDV7366413.1"
                     /translation="MKKIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGA
                     RILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKG
                     DGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFV
                     KVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGIRRRFDKDEVDRLSRAFKTL
                     FRQGDLKENAKNLLENQESENVKKMCHFILETKRGIPVYRGKNNA"
     gene            complement(17914..18354)
                     /gene="fabZ"
                     /locus_tag="RJ259_000678"
     CDS             complement(17914..18354)
                     /gene="fabZ"
                     /locus_tag="RJ259_000678"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HDV7366414.1"
                     /translation="MIDVMQIQEILPHRYPFLLVDKITELKVKEVVLGYKNISISDHV
                     FMGHFPGHPIYPGVLILEGMAQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVR
                     PGDRLDYEMSVVKNRGNMWIFKGQAFVDGNLVAEAELKAMIVDK"
BASE COUNT         6291 a         3093 c         2862 g         6123 t
ORIGIN      
        1 tatatcgatt aacattattt aaactataaa aatataaagt tagtaaggat ggtttaaata
       61 tgtttgattt tttcaaacct aaggcaaaag ctattaaatt tcctctttag gaaattttac
      121 ctagatatta caaaatgaga acttggagtt taagtggggt ttttatagga tatatgggat
      181 attatcttgt gcgaaataat atcactcttt caactccatt tatacaaaat caacttaatc
      241 tcagtaaatc agacatcgga acaatcacag gctcaatgct tatagcttac gggattagca
      301 agggtgcaat gagcgttata agcgacaaag ctgatcctaa aaaatcatgg ctttaggtct
      361 tattttatgt gctcttgtaa atgttttact tggtttttca aattcttttt acgcttatgt
      421 aggttttgtt atcgcgcttg gggtttttca aggtatgggg gtaggtcctt cttttatcac
      481 tcttgcaaac tggtatccta aaaaagagcg gggaatttac acggccgttt ggaatatctc
      541 acataatata ggaggcggga tagttgctcc tatagtttcg ctttcaggtt ttgctttggc
      601 agcattattg ggtgtgagta tggcaaattt taacgaaaca tattggcaca tgaatcattt
      661 ttatactcct gctgcttgtg cagttatcat tagtctttat gcgctttatg cagttaaagg
      721 aaatcctaaa aatgaaggtt tggttgatat tactgaaatc aatgaaatgc gagggattaa
      781 aacagaagaa atcaaagcta tagaaactcc aaatttaagc agttttgaaa ttttttatca
      841 ttatgtactt aaaaacaaaa atgcttggta tgtggcttgg atggatactt ttgtttatat
      901 ggtgcgtttt gggcttattt cttggcttcc tatttacttg ctagaaacaa aaggctttaa
      961 taaagaacaa ataggtattg ccttttggct ttttgaatgg gctgctatac cttctacttt
     1021 acttgcagga tatatttcag ataaaatttt taaaggctat agaatgcctc ctgctatagg
     1081 cgccatggtg attattttct ttatgattat tggatatttt acttcaaata atctttatat
     1141 ggttattttc tttgcagcta tggcggggtg tttagtctat ataccacaat ttttagcaag
     1201 tatgcaaact atggaagtcg ttcctgcttt tgcagtagga tcttgtgtag gacttcatgg
     1261 ctttatgagt tatgtagtcg gcgcttcact tggaacaaaa gcataggttg ggctgtggat
     1321 tactatggta gttggaatgc tggtcttatc atgctcctta gtgcttgtat tctttgtata
     1381 ctttgttcta ctttatgtca ttttagcgct aaaaagaagc atcaataaca attttaactt
     1441 ttgcttgcaa aaataccaag caaaagttag attttaataa tatttttgtt acattataac
     1501 tatttattaa catacaattt ctaaaatctt accttcaatc aataaaaatt tatcataaaa
     1561 ggaaatacta tgaaaaaaat tattacttta tttggtgcat gtgccttagc ttttagtata
     1621 gcaaatgcag atgtaaacct ttacggacca ggtggcccac acacggcctt aaaagatata
     1681 gcaaacaaat atagcgaaaa aacaggcgtt aaagtaaatg taaattttgg ccctcaagcg
     1741 acttggtttg aaaaggctaa aaaagatgca gatattttat ttggcgcttc agatcaatcg
     1801 gctttagcta tagcgagtga ttttggaaaa gattttaatg tgagtaaaat caagccttta
     1861 tattttagag aagccatcat acttactcaa aaaggcaatc ctttaaaaat caaaggttta
     1921 aaagatttgg ctaataaaaa agtaagaatc gttgtgcctg aaggtgctgg aaagagcaat
     1981 acttctggaa ctggagtttg ggaagatatg ataggtagaa ctcaagatat aaaaaccata
     2041 caaaatttta gaaacaatat cgtggccttt gttccaaata gtggaagtgc aagaaagctt
     2101 ttcgcacaag atcaagccga tgcttggatc acttggattg actggtcaaa aagcaatcct
     2161 gacataggaa ctgccgtagc tatagaaaaa gatttggttg tttatagaac ttttaatgtg
     2221 atagctaaag aaggtgcgag caaagaaaca caagatttta ttgcttattt aagttctaag
     2281 gaagctaaag aaatttttaa aaaatacggc tggagagaat aaaccttcat acacgctttt
     2341 tagcgtgtat tcttgcataa cttcttttaa ttaagccaaa ataagataaa atgtttaaaa
     2401 tattgataag gaaatttttt gaaaaccttt ttagtttgtg ctttagagcc ttcagcaaat
     2461 ttgcatttaa aagaagtttt aaaagcttat aaaaaagatt ttggtgaatt tgaacttcat
     2521 gggatttatg atgagagttt atgcaaagaa tttgatttaa attctaaacc actttatagc
     2581 tcacatgaat ttagtgctat gggttttata gaagttttac ctttgatttt caaagcaaaa
     2641 aaagctataa aagaacttgc aaatttaagc tttactcaaa aaataaatgg gattttatgt
     2701 atagattcac ccgcttttaa catacctttt gctaaagctt taaaaaaagc aggcagtaaa
     2761 attccacgca tttattatat cttgcctcaa gtttgggcgt ggaaaaaagg tcgcatacct
     2821 atcatagaaa gtcattttga tattttagct tctattttgc cctttgataa tcaatttttt
     2881 aacaaaagca cctatatagg ccatccgctt ttagatgaga taaaagaatt taaaaatcaa
     2941 gaagacatta atcatacatt ttcaaaaaaa gatgatgaaa aaactatagc ctttttacca
     3001 ggttcaaggc gtagtgaaat taggcgttta atgcctattt ttaaagaact ttctcaaaaa
     3061 tttaagggta aaaaaattct ttgcgttccc tcatttaatc ttgaaaaatt agaagtttat
     3121 ggtgatatta gcgaatttaa gatagaaagt aacactccaa aagtgcttaa aaaagctgat
     3181 tttgccttta tttgtagtgg aacagctact ttagaagcag ctttagtggg aactcctttt
     3241 gttcttgctt ataaggcaaa ggctatcgat atttttatcg caaaactttt tgtaaaatta
     3301 aaacatatag gacttgcaaa tattttttgt gatttcgctg gaaaagaagc tttaaatcct
     3361 gaatttttac aagataaagt caatgtttta aatttatatg aagcttacaa taaatatgat
     3421 tataaggcat tttttgctaa agttgatttt ttaaaagaat atttacaatt tggaagtgct
     3481 aaaaatttag caaaaatcct aaacgaaata taaaaggata aatcatgcaa aaagaaccaa
     3541 tgagtcaatt tggctatgat aagttagccg cagaattaaa agatttaaaa gacaatcaac
     3601 gccctgccgt tgtaatagaa atcgatacag caagaagtca tggggatttg aaagaaaatg
     3661 ctgaatacca tgctgcaaga gaaaagcaag ctttgataga aagtcgtatt gcagagctta
     3721 gtgacttgct agcaagagct caagtgatcg atccttcaag ctatgagcac gatagtgtga
     3781 aatttggttc aagtgttgtg atcatggatt tggatacaga aaaagaaagc aaatatactc
     3841 tagtaggaat ttgcgaagga aatttagata agggttatat ttccatcgca tctccaatag
     3901 caaaagctat gcttggaaaa aaagaaggag atgattttaa agtgcgtttg ccaaaaggtg
     3961 aaagtgaatt tgaaatcctt tctataaatt atgagccttt gaaattttaa ggataaaaaa
     4021 ttttactaca aaatggagcg attttaatcg cagatgctca tgaaaatgaa caaagaaagg
     4081 gattttggga atttttacaa gccttaaaaa aaggtaaaat ttccacccct caactcatac
     4141 ttataggtga tattttcgat ttgcttatag gcgaaatctc tgctacacat gaatttgcta
     4201 aaccttacat agaactttta gaagaattgg ccttaaaaat tgaaattatc tacttagaag
     4261 gcaatcatga ttttaatctt tcttgttttt ttaaaagggt aaaaattttt aacttacaag
     4321 agcagcccat aaagcttaat ttgcatacaa gtaaaggtaa taatcttgtt ttaaatagtg
     4381 cttttataaa attagctcac ggagatattt ttttaccacc tcttttacaa tttactctga
     4441 aaacattaag aaatcattat ttgcttgtat ttttgaattt tttaaatatt attactcgta
     4501 attttatttc aaataaaatt cttcaaaatc aaaacaaaaa aaaccttttt tatcaaataa
     4561 aagattttga aaatttagcg aaaaaaagat atgaaaaata tgaaaattta ggattttggg
     4621 tatgtgaagg acactatcat caaaatcatc aaatcaacaa agaaaacatt aaatatctta
     4681 acttagctag ttttgcatat gagagaagtt tttttgtagt agaatatcag caagaaatca
     4741 aatttcgaga acagaaattg aggggtcaaa atgtttgatg aaaatatcgt gaaaacgggt
     4801 tcaaatgaaa tggagcttgt cgatttccgt atctttaagc aagggcacga taaagtctat
     4861 gaaggaattt atggtgtaaa tgtttctaag gtaagggaga ttataaaaat cccaagcctt
     4921 acagaacttc caggtgtacc tgattacatc gaaggaatct ttgatcttcg tggagtggtt
     4981 atacctgtag tcaatcttgc caaatggatg caaatcactg agccagaaag cactatgcta
     5041 aaacctagag ttattattac tgaatttagc aatattctta ttggttttat agttcacgaa
     5101 gcaaaaagaa ttcgtagaat aaactggaaa gatatagaac cagcaacttt ttctacagga
     5161 tcaggtgctt tagataaagg taaaattaca ggtgtaacac gcattgaaaa tgatgaagtg
     5221 ttgctaattt tagatcttga aagtgttgtt gaagatttag gaatttacgc tccaaaaaca
     5281 gatatagatt ttggaaaaat agaaaaattt actggaacag cacttatact tgatgacagc
     5341 atgactgcta gaaaacgcgt caaagaaatg atgcaacaga tgggctttca agttgttgaa
     5401 gctaaggacg gcgtagaggg cataaacaaa ttagaagaat taagccaaat ttatggtgaa
     5461 agtttaaacg atactttaaa aattatagta agcgatgtcg aaatgccaca aatggatggt
     5521 ttccactttg ctgcacgcat taaagaagat ccaagattta aagatattcc tatagtcttt
     5581 aactcatctt tatcaaatga atttatgaat gagaaaggtg ttcaagaagc tggtggagaa
     5641 ggctatcttg tcaaatttaa cgctagcgat ttcttcaatg aaattgcaaa ggttattaaa
     5701 aaacatcaat ctcaagaaca ggggtaaaat atggaagata tgcaagaaat acttgaagac
     5761 tttttggttg aagcttttga gcttgttgag caaatcgacc atgatttagt agagcttgaa
     5821 tcaaatccag aagatttaga attattaaat agaattttcc gtgttgcaca tacggttaaa
     5881 ggatcatcaa gcttcttaaa ttttgatgtt ttaacaaagt taactcacca catggaggat
     5941 gttttaaaca aagcaagaca tggcgagtta aaaataactc cagatatcat ggatgtggtt
     6001 ttagagtcta ttgatagaat gaaaacttta cttaattcca ttcgtgataa tggcaacgat
     6061 actgctattg gtatggatat agaaccaatt tgcgcaagat taacagctat ttcagaggga
     6121 gagtctcctg ttgtggcaac agattcaaat gaaaaatcta ttccacaagc agaactagaa
     6181 gcaccaaaac aagaaatagc tactccagaa cctgaagtag atgttaatca attaagtgat
     6241 tctgaagttg aagctgaaat agaaagactt ttaaaagtta gaaaagctga agatcaagct
     6301 cgtcgcgcac aaaagaaaca aacaacaaat gcggcaccta aaccgactaa caatacagca
     6361 aataaaccta cggaaagtgg agagaaaaaa gttcctgctt caggtagtaa tgctagcagt
     6421 atggatcaaa ccatacgcgt ggaggtaaaa agattagatc acttaatgaa tctaattgga
     6481 gagcttgttt taggcaaaaa ccgtttgctt aaaatttacg atgatgttga agagcgttat
     6541 gaaggagaaa aattccttga agaacttaat caggttgtaa gtcaattaag tattattaca
     6601 actgatgttc agcttgctgt gatgaaaaca agaatgcaac ctatagcaaa agttttcaat
     6661 aaattcccaa gagttgttcg tgatttaagt cgtgaattag gaaagcaaat agaacttgaa
     6721 attacaggtg aagaaactga acttgataaa tctatcgtag aggaaattgg cgatcctatc
     6781 atgcatatga ttagaaattc atgtgatcat ggtgttgagg atccagcaac tcgtgcagca
     6841 aatggaaaac ctgaaaaagg tatagtacaa cttaaagctt ataatgaagg caatcacatc
     6901 gttgtagaaa ttacagatga cggtaaagga cttgatccaa atggcttaaa agcaaaagct
     6961 atagagaaaa atttgattac cgaaagagaa gcagatcaaa tgacagacaa agaagctttt
     7021 gctttgattt tcaagcctgg tttttcaact gcagctaaag taacaaatgt ttcaggtcgt
     7081 ggtgtaggaa tggatgttgt taaaaccaac atcgaaaaac ttaatggggt aattgaaatt
     7141 gatagtgagt taggcaaagg aagttcattt aaacttaaaa ttcctcttac cttggcaatc
     7201 attcaatctt tacttgtagg aactcaagag gaattctatg caattccact tgcaagcgtt
     7261 cttgaaacag ttagagtgcc aattgatgat atctatacta tcgaaggtaa aaatgtatta
     7321 cgcttaagag atgaagtgct ttctcttgtg agactttcag atgtatttgg agttaaacaa
     7381 gtccttgaaa gcggtgatca aacttatgtc gttgttatag gggtagcaga aagcaagctt
     7441 ggtattatag tagatactct tgtaggacaa gaagaaatag ttattaaatc tatgggtgat
     7501 tatttacaaa atatccaagg tatagcagga gctacaatcc gtggtgatgg tagagtgaca
     7561 ttaatcattg atgtaggtgc tatgatggat atggccaaag aaattaaagt tgatattaaa
     7621 gcgcaattag aatcaagtgc caaaaaacct aaagaacaac caagtgacta taaagtctta
     7681 attgtagatg attctaaaat ggatagaact ttaatgcaaa aagctttaga accgctagga
     7741 gttagtttaa tcgaagcaac aaatggtgtt gaagcattga atattataaa atctggcgaa
     7801 catgatattg atgcaatgct tatagatatc gaaatgccaa gaatggatgg atacacctta
     7861 gctggtgaaa ttagaaagta ttctaaatat cgcaacttac cattgatagc agttacttca
     7921 agaacaagta aaactgaccg tttaagaggt gttgaagtgg gtatgaccga atatatcact
     7981 aaaccttatt ctccagaata cttggaaaat gtggttagaa aaaatttgaa actaggataa
     8041 gaatatgagt aatgaaaaat tagagcaaat tttgcaaaaa cagcaaactc agatggctgg
     8101 tcctgatgtc gatcaaagag aagatgatat catccaactt gttggctttg tagttggaga
     8161 tgaggaatat gcgattccaa ttcttaatat acaagaaatc atcaaaccta tagaatatac
     8221 tagagttcct agtgtacctg attatgttct aggggttttt aatatgcgtg gtaatgttat
     8281 gccgctcatt gatctagctc aacgctttca tttaggaagt tctaaaatga cacctcaaac
     8341 aagatatatt gttttaagag gtgagacaaa tggaactgga gttggaggaa atgctggttt
     8401 tgttatagat agattaactg aagcaattaa aattcacaga aacagaatcg atccaccacc
     8461 tgaaacttta gttaaagaca aaggtatgat ttatggtata ggaaaaagag atgaaaatat
     8521 cttaactata ctcaaagtag aagctttgct taagcgcgaa ttttaatgat taaactttgt
     8581 gtttttgact ttgatgctac tttaatggat ggtgaaacca tcgatatttt agctacagcg
     8641 catggcaagg gtaatcaaac aagcgaaatt acccgccatg ctatgactgg agaacttgat
     8701 tttttcgaaa gtcttcaaaa acgagtaagc tttttaaaag gtatgtctta taaaaaagtt
     8761 ttagaattaa gtagcacact tccactaatg cgtggagcac atgaacttat ccaatattta
     8821 aaatctaaaa atatacaaat tgttattttt agcggtggtt ttcatgaagg cataaatcct
     8881 gctatgcaaa aacttggaat taacctcggt tttgcaaatt atctgcatca taaaaatgac
     8941 attttaacag ggctagttgg tggggaaatg atgttttcaa attcaaaagg cttaatgcta
     9001 caacgattaa aaagcttttt aaatttgaaa acagatgaag tgatgtgtgt tggcgatggg
     9061 gcaaatgatt tggcaatgtt taacgaaagt ggattaaaga ttgcattttg tgctaaagaa
     9121 attttacgtt ctcaagctga tatttgcata gatataaaag acttaaaaga aataataaag
     9181 gtaatataat gaaaaatttt tctctttggt gtgattttat agaaaatagt tttttagata
     9241 atgaattttt aaatttatta tcacatggaa ttaatggcgc tacttcaaat cctgctattt
     9301 ttaaaaatgc tattttaaat tctccaattt ataaagataa aattcttaaa ttaaaagaaa
     9361 aaaaaacaaa agatatttat gaagaattag caatttctga tattcaaaaa gcagctgata
     9421 aattagctcc tcttttttat caaaaaaatg atggatttat aagtattgaa atagatccaa
     9481 gacttcatga taacacaact cttagtttag gtgaagctaa aagactttat agtgctattg
     9541 gcaaagaaaa tataatgatt aaaattccag ctacaaaagc ttcttatgaa gtaatgtatg
     9601 aacttatgaa aaatggtatt agcgtcaatg ctaccttaat tttttctctt gaacaaagtc
     9661 aaaaatgttt tgaagcttta aatgcaggtt tagtcgaatt tagaaaaaac aatatagcct
     9721 taaaagaaca aaacactaga acaccacaag ctgttataag tatttttgta agtcgttttg
     9781 atagactttt aaatcctaag gctaaggagc aaaatcgtat tggaatttta aatgcaaatt
     9841 tagcttataa caatatctac tcaaaaaatg aacctaatat tcgtgccttg tttgcaagca
     9901 ccggagttaa aggagatgat ctgccaaaag actattatat caaagaactt ctttttgaga
     9961 attctgttaa tactgctcct cttgatgcaa tagaggcatt taaaggaaaa atgcatttta
    10021 aaaaaccttt aatgaatttt gaaatttata cagaacttaa tcaaatcatt tctcaaagtg
    10081 aacgagaaaa agcttgcaat gatttattaa gtgatggcct agagcaattt tgtattgctt
    10141 ttgaagatat tttaaaagct ctttaattaa cgtattttta tcattttatt ctttgaaagt
    10201 tttaatattt ttgatgggat attttcgaaa aatttctcat caagtattat atcggcaaca
    10261 cttctagccc attcttcatc aaattctttt ccatgcttgt ttgccgaaga tgaataaaaa
    10321 tagccatttt tacttaaaaa attcgcatgt ttacactctt tcacaatacg aatggcctga
    10381 ttattgggat aaataaaagt tgttttttta gaacgacgta ctaaattttt aaaagatttt
    10441 ggaattcttg ctaaactttt taactcgcaa aatttcgcag aagtgattaa gcaaggctga
    10501 tttttatctc taccttttaa agcattaatc tcttctaaat ttttacttaa aaatcctacc
    10561 gtagtatctg tttgagctaa ataaatcaag atttaagcca ctcttgcaaa ctctttacat
    10621 ctaggcaaga tttactctgt atagctttaa tcgattttgc acctgctaaa gctgatcgta
    10681 aatttgtaaa ataaggtatt ttaaaacgaa taatattttc acgaattttt ttcgtatcgc
    10741 ctttaaaact gtgactatcg cttgtattga taactaagtg aatttctcca tttttcaatt
    10801 tatcttcaac attggggcgt ccttctgaaa ttttatgtac aagttcgcac tcaaaaccac
    10861 tttctaaaat ttccttgcaa gttccccctg ttgccataag cttaaagcca agctttacat
    10921 attctgcagc gatttttttg gtatattttt tatccttatc ttttaaggag ataaatacca
    10981 cgccttgctc tggaagatga ttaaacgatg caatttgact tttcgcataa gaatttgcaa
    11041 aatccttgct tatacccata acttcacccg ttgaacgcat ttcaggacct aattctaaat
    11101 cacttccact aagttttgca aatggaaata ctgcttcttt cacgctcata tattttggag
    11161 ttttagggcg taaaatttta gtatcaaaat taaccacttt aaaagtatca taaaatttta
    11221 aagcttcttt taaatttcct tgccacatca cacgcgttgc cacttttgct aaaggaatac
    11281 ccgtagcttt actaacaaaa ggtatggtac gactagctct aggatttacc tctatcatat
    11341 aaagctcatt attatgtaaa gcaaattgta tatttaaaag tcctacaact cccaaattta
    11401 aagcaatatc tgcggttttt tgtgcaataa attcttgcat tttttcatcg atattgcaag
    11461 gcggcaaaga acaagcactg tcacccgaat gaattcctgc ttcttctatg tgctccataa
    11521 ttcctgcaac ataaacatct ttgccatcac aaatcgcatc aacatcaatt tctgtagcat
    11581 tgtctaaaaa ctgatcgatc aaaacagggc ttttatcgct tacatccaca gcttcttgca
    11641 tatagagtct aagttcagcc tcatcattta ccacgcgcat cgcacgccca cctaaaacat
    11701 aacttggtct tacaagcaca ggatacccta tatcactagc cttaagaacc gcttcttcta
    11761 cgcttgttgc agtagaattt tttggctgat tgatacctag ctttgtaata aattcggcaa
    11821 atttctttct atcttctgcc atatcaatta ctcttgcgct agtacctata atcttagctc
    11881 caaaagcact taaacgctta gcaaatttca aaggagtttg tccaccaaaa tgcacaatca
    11941 ctccatcagg tttttcacgc tcaatcaccg ctcttaaatg ttcgaaatca ataggctcga
    12001 aatacaaaat atcacttgta tcatagtcag tcgaaacggt ttcaggatta caattataca
    12061 taatagtttt aatacccata tctttaagcg caaaagaagc atgtacgcaa gcatagtcaa
    12121 attctatacc ttgtcctata cggtttggcc ccccacctat aatcatcact tttttttctt
    12181 ttttatcctt agcatcgttt ttactttgag tgagttcgct tacattgata cttgaataaa
    12241 gataaggagt taaggcttca aattcacccg cacaagtatc cacttcacta aattctgcga
    12301 tgattttttg cttcattctt acataataaa tatcattttg gcttaattct aaattatctt
    12361 tcaaatttac aagcaaggct atcattttat ctgaaaagcc catagttttt gcttttctca
    12421 aaagagcctt attgtttaaa atatccatat caatttgttc ttcaaaatct acaatttctt
    12481 taatctgtgt taaaaaccaa ggatctattt tacaaagctc ataaagttct tctacgctaa
    12541 aaccttccct aaaagcttga gcaacataaa gtaaacgctt ttcattggca ttgcgaattt
    12601 taaaaacaag atcatttctc tcttcaaatt ttaccctatc aaaaccactt aaagaacgct
    12661 caagcgaaca aagtgctttt tgtatacttt ctttaaaagt gcgtcctata gccattacct
    12721 cacccacact tttcatagct gtacctaaag ttgtatttgc tcctggaaat ttttcaaagg
    12781 taaagcgagg aatttttgtt acaatataat caatcacagg ctcgaaagat gcaggagttc
    12841 ctgtaatatc atttttaatc tcatctaagc taaaacctac tgccaaaagt gtcgcaacct
    12901 ttgctatagg ataacccgtt gccttagaag ctaaagcact tgatcttgaa actcttggat
    12961 tcatttctat aactatcatt cttccatttt ttgggttgat agcaaattgc acattacttc
    13021 cgcctgtatc tacaccaatt tcacgcaaaa tagcaaaaga agcattacgc ataacttgat
    13081 attctttatc tgtcaaagtt aatgctggag ctattgtaat actatctcct gtatgaactc
    13141 ccataggatc gatattttct atgctacaaa ctatgataca attatccgct ctatcgcgta
    13201 taacttccat ttcatattct ttccaaccta acaaactttc ttcaatcaaa atttcatgaa
    13261 taggtgataa agctaaagca gtattggtaa gttctttaaa ttcgtccata ttgtaaacca
    13321 caccacttcc agcaccccct aaagtataag aagcacggat catcaaagga aagccgattt
    13381 catctacggc ttttaaagct tcgtcataat tatacgcata catcgatttt ggcaaatcca
    13441 tgccaatttt tttcatacat tctttaaaaa cctgacgatc ttcgcctttt ttaatcgcct
    13501 caggatttgc gcctaaaaat ttcacatctc ctaaaagtcc gctttcataa acttccatag
    13561 caacatttaa cgctacttgt ccacccatag ttggcaaaat tgcatcaatt ttttcttttt
    13621 taataatact taaaatactt tcttttgtta tgggttctat ataagtcgca tctgcaaatt
    13681 cgggatctgt catgatggtt gcaggatttg agttgattaa tactacacga tatcctaatt
    13741 cttttaaagt ctttgcggct tgagttccag aataatcaaa ttcacaagct tgtcctatca
    13801 caataggacc acttcctata agtaaaatgc ttttaatatc tgttcgtttt ggcataaatt
    13861 ttcctaagag cataaatttg ggctgattat aacaaaaatt agttttataa actttgaaat
    13921 tatcgatata attttaaaaa ataaacactc tgcttttaat ctaggaaata atacataaag
    13981 aaatttaaga ttttttataa aattctcatt caattataaa catttatttg ataatttaac
    14041 aaaattttta gcattaaaca aagttataat aattagcaaa aatatagaaa atttttaaaa
    14101 agtctaatcc ttgacttata aattatcaac tacatataaa taagcaggaa tactaatctt
    14161 aacataaggc tttacttcta cactttgata catatcttca tcattaactc tattcacaat
    14221 accgacaggt atatctgaaa agaaaatatt atcaagtcca cttgttaaaa tttcatctcc
    14281 ggtattaatt tttgcccatt ttggaataaa tttaaccaca atcctgccat cttcaccctg
    14341 gattaaacct ggagctttgg attttcctat ataaacagaa aaaacacact gatcatcacc
    14401 ttgtaaaaga gccattgctc taccattttt attaatagct atacctgcag tatatccttg
    14461 atatatcaaa ccacggtttt taccaacggg aattttgctc caatctaacc ataatttttt
    14521 ataatcattc aattgaacat aagaaataac tctagttaaa gaaacttgag gtaaatattt
    14581 tgtagaattt tgatcctcta aaatacgatt taattgattt gcaaaactag ttacctttac
    14641 agcaatatct tctaattctt tatttctagc ttttagttgc tgaatttgat ttgcttgatt
    14701 aaagtgttct gaaatttttt ctcccaaata atctttaata ttataaaaat tacctataac
    14761 aaaatcatta acacggagaa cattttgctt aataagtcct ccataataaa aagatataaa
    14821 aaccaaaaag gctaagacaa gaacataaaa aatcttattc ttcattggtt aattgttgca
    14881 ataatgaaat ttcctctaaa gctttacctg ttccttttgc tacagctaaa agcggttcat
    14941 ctgcgatata aactggcaaa cgtacaattt cacttaagta tttatcaaga ccacgaatca
    15001 atgctccgcc acctgttaaa actacaccat tttctactat atcacttgct aaatcaggcg
    15061 gcatcatttc aagaaccatt tttaaagcat cagcaatttc ttttaaatac tcacgcatcg
    15121 cttctcttac atcttcgctt gtaagttcaa tacgacttaa aagtccactt acttgatcgc
    15181 gtccttttac caccatagaa agctcttttg gaagttgtat tgctgaacct atagtgattt
    15241 tgatctcttc gcctgttctt tcacctatga taagattgta tttttctttt acataattaa
    15301 ctatactcat atcaagctta tctccagccg tacgaataga ctttgaaatc acaagtccac
    15361 ccaaagaaat cactccaatc tcagtagttc caccccctat atctactacc aaatttcctt
    15421 taggctcttg tataggtaaa cttgcaccaa tagctgctgc cataggctct tcaatcaaaa
    15481 atacctctct tgcacctgcg cttaaagcac tttctcttac cgcttttctt tctacttgag
    15541 ttaaaccata aggaacagaa atgataattc tagggcgtaa aaaacttttt ctacggtgtg
    15601 ttttttctat aaaatagcgg atcatttttt cagtcatatc aaaatctgca atcacgccat
    15661 ctttcatagg acgaatagct tcgatattgc ctggagtttt tcccaccata tctttagctt
    15721 ctttacctac ggctaaaatt tttgctttgg aaccatacct ttctctttca actgccacaa
    15781 cagaaggctc atttatcact atacccttat cttttaccaa aactagcgta ttagctgttc
    15841 ctaaatcaat ccccatatca ctagaaaaaa atcctataag ttgatctaat atcatttcta
    15901 tcctttttaa cttatttttc tttttattaa taatgccttt gcattgtctt taacaacttc
    15961 tttggttatt acaatatcat agtctttata ctctggtaac tcaaacatta aatctaccat
    16021 catttcttct ataatacttc taagccccct agcccctgtt tttctctcca atgcaagttg
    16081 tgcgatagct cttagagcat cttcttcaaa ttttaaattt accccatcaa tagcaaaaag
    16141 cttttgatat tgcttaataa tggcattttt aggttcagtt aaaattctta ccatatcttc
    16201 ttcattaagc tcatttaaag atgcaatcac atgcaaacga cctataagct caggaatcaa
    16261 accaaaatga accaaatcat caggttcaat tttctcaagt aaagctttat tttcttcttt
    16321 tgcatcatca aaaaaaccta caactttatc tccaagtttt ctttttaaga tagtttccaa
    16381 accatcaaaa gctccaccac aaacaaataa aatatttgaa gtgtcaattt gtataaactc
    16441 ttgatttgga tgttttctcc ccccccttgg tggaatattt accaaacttc cttcgataat
    16501 cttaagtaaa gcttgttgca caccctctcc acttacatca cgagtaatag aacgattttc
    16561 actcattctg gcaattttat caatctcatc aataaaaact ataccttttt gagctctttg
    16621 cacatctcca tctgcagctt gtaaaagacg tgttaaaata ttttccacat cctcacctac
    16681 atatcctgct tcagttaaag aagttgcatc acaaattgct ataggtacat ctaaaaattt
    16741 agctaaagtt tgcgccaata aagtttttcc acttcctgtt ggcccaacaa gtaaaatatt
    16801 tgacttaaaa agctctgtat catcatcttg aagttcagct ttaaaaagtc ttttataatg
    16861 attgtatact ccaacactaa aaactttttt agctctatct tgtcctatga cataacgatc
    16921 taaataagct tttaattctt ttggagtgat atctttaaat tctgtattat gactttgttt
    16981 aggttcttta aattcttttt cttctccata aataatacta taagcacctt caacgcaata
    17041 ttcacaaata aaagcatcat cattttcatt tgctaaaatt cttctttgtg gattctccac
    17101 ttcattgcaa aaactacatt ttctaggcat tatttttacc cctatagaca ggaattccac
    17161 gctttgtttc taatataaaa tgacacattt ttttaacatt ttcactttct tgattttcaa
    17221 gcaaattttt agcattttct tttaagtctc cttgtctaaa taaagtttta aaagctctgc
    17281 taagtctatc tacttcatct ttatcaaaac gacgacgaat acctactaaa tttaaacttc
    17341 taatacttgc acgatttcct tctgctaaac aaaacggtac tatatcctga gaaagtgcac
    17401 ttgctcctgc tatcatacaa ccctcaccta ctttgacaaa ttgatgaata ggtgtaagcc
    17461 cgcctacaac tgtaaaatct ccaagctcta catgtcctgc taaagttgca ttattagcta
    17521 aaataatatt attacctaaa agacaatcat gagcaatatg acaataagcc ataataaaag
    17581 cattatcgcc tatacgagta aaaccatctc ctttagctgt acctgaattt atcgttgcaa
    17641 attctctaat agttgcattt tttcctataa caacaccgct tttttgctct tctttataag
    17701 atatgtcctg aggaatatcg cctactatag cataagaaaa tacacgagaa tgatcaccta
    17761 tagttgtatc tgaaagaatt cgagcacctt gtttgatgac aacattatta cctattttag
    17821 catctttgct tacataggca taagcttcta ttacaacatc gtcaccaagt tgtgcaccct
    17881 cttcaatcac cgcacttgga tgaatttttt tcattattta tccactatca tagctttaag
    17941 ctcggcctct gcaactaaat ttccatctac aaaagcttgc cctttaaaaa tccacatatt
    18001 accacgattt ttaaccacgc tcatttcata atcaagccta tctccaggac gcacaggatt
    18061 tctaaatttt gctccatcta tgcctgtgaa ataaactact ttactttttg gatccacttt
    18121 atcttccata ctttcaaaag ctaaaactcc acctgtttga gccatacctt ctaaaatcaa
    18181 aactccagga taaataggat gccctggaaa atgtcccata aaaacatggt cacttatact
    18241 gatgttttta tatcctagca ccacttcttt aacttttaat tctgtaattt tatctactag
    18301 taaaaaagga taacggtgtg gtaagatttc ttgaatttgc attacatcta tcattattaa
    18361 attaacctt
//
LOCUS       DAPIWJ010000025        18160 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.025, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000025 DAPIWJ010000000
VERSION     DAPIWJ010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18160
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.025"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..614
                     /locus_tag="RJ259_000679"
     CDS             <1..614
                     /locus_tag="RJ259_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366415.1"
                     /translation="VQAASKDGKIFYISEYSFKDNQVYDPQAEIFKKINGKNFYASKS
                     KYPISNLTMIYNNPKSGNKNLSKLEILTPDTSKEEIITAFSTLGTVSSDTQAVPSSFM
                     PFIVTAYAQNTNATNNKLILENGELSSVYFCKPSIGDCGVPNNSQKGDRFKYLITAAF
                     TDRGEGFNNQTILKENSYINNGCRKYLHLALKWSSLYFRICSF"
     gene            544..2472
                     /locus_tag="RJ259_000680"
     CDS             544..2472
                     /locus_tag="RJ259_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366416.1"
                     /translation="MGVENIYTLPLNGVPYISGSVAFDGEAKDNKLILESNTKIDLHN
                     SQYFSDEEGKDIYDERITRLMGAFGINSNLQNNKVLIDSANIVLHGPDGEYTARSTFE
                     ILGALADVNNLKKYNVSKNSVIIKNLNLDLMVNSQNKITFYDAVLFGEIYGGRTLQGN
                     AEKNSIEVYHFNSLDHLNKNIKTHASLNLYGGYSNDGEANGNKIVFRLKKPLKISDNF
                     YGKNYYNLYGGFATEGANFNVFDIQNDLTYEKVPQNYSDKFTVYAARTLSGKANNNTL
                     SIKDSVISLPLYAFITSETTLDGIDYIADESNNNEVNFENIKSSKNLSLMINAKNVSN
                     NKINYNLIQSLTEASSLGKGSKIILKATQNANNNLIKLKDCSSAAVESSCIIKADKES
                     AFNKIINNNTAFSTASDKRQGYVGLIAGVSANSHDNIMELVNLNIDEYKNQDAIFLAP
                     SGTSDISNFKSYNNTLYLGGELNFFKDVNIDLLSGSVFHEVNKKGKIITQILPHQEDF
                     SKNNRLIIDTQDVKSEVVNNFENFTFILPNKIKNPILTIEKLINLPANGSMEILTKNK
                     PTKGKYILIQSDVGIYDGDNGLLNQQELENLLEKMKNNKNKFNYNKIEKLAKSTLKNV
                     NFSFEVSDDAKIIYINIL"
     gene            2484..3939
                     /locus_tag="RJ259_000681"
                     /pseudo
     CDS             2484..3939
                     /locus_tag="RJ259_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874703.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
     gene            3936..4100
                     /locus_tag="RJ259_000682"
     CDS             3936..4100
                     /locus_tag="RJ259_000682"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366417.1"
                     /translation="MSAGNYKTQAGKVIGDPGISVNNNFSNIYVYHNLENGYIDEGQN
                     FLSLCNIIMK"
     gene            4079..5005
                     /locus_tag="RJ259_000683"
     CDS             4079..5005
                     /locus_tag="RJ259_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366418.1"
                     /translation="MQYNNEVTGKKDFDSAVRKKFNDIKYLDNNSYAFADSFTKATDA
                     VKLSKDDFDPKLLQRILDDLMNGKYTYDFDTKTWTYTDSKGVVGKDEASEITQSLNFL
                     NAFKDTGVEQEFLKLWQGSQEQNYKNYTNLYEKWTQKKTAMDKIKTGEGYFASFKEEL
                     QKYQEALAQLDKENKNYEKIKESGLVSDETLRAIYEKLLEQKEALEKQFADLSGNEGF
                     RYKLENEILNSQGFSIEGKDVDGKVYTGNFNFKGKLASLPEKPNISIYEPDKQGGEDP
                     DKPSVLPPEIPEKVVEAPIKIQTEVDAKKRRR"
     gene            5118..6687
                     /locus_tag="RJ259_000684"
                     /pseudo
     CDS             5118..6687
                     /locus_tag="RJ259_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856720.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            7315..8827
                     /locus_tag="RJ259_000685"
     rRNA            7315..8827
                     /locus_tag="RJ259_000685"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            8930..9005
                     /locus_tag="RJ259_000686"
     tRNA            8930..9005
                     /locus_tag="RJ259_000686"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8963..8965,aa:Ala,seq:tgc)
     gene            9014..9090
                     /locus_tag="RJ259_000687"
     tRNA            9014..9090
                     /locus_tag="RJ259_000687"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9048..9050,aa:Ile,seq:gat)
     gene            9626..12532
                     /locus_tag="RJ259_000688"
     rRNA            9626..12532
                     /locus_tag="RJ259_000688"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            12798..12914
                     /gene="rrf"
                     /locus_tag="RJ259_000689"
     rRNA            12798..12914
                     /gene="rrf"
                     /locus_tag="RJ259_000689"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(13110..14318)
                     /locus_tag="RJ259_000690"
     CDS             complement(13110..14318)
                     /locus_tag="RJ259_000690"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HDV7366419.1"
                     /translation="MKISLFGYGKTTRAIAENLVDKFGPFDIYDDHFTETKKDTLGNL
                     LLNPNDFDDNLSDIEIPSPGFPPKHKLIQKAKNLQSEYDFFYDIMPKSVWISGTNGKT
                     TTTQMATHLLSHIGAVMGGNVGTPLAELNPYAKLWILETSSFTLHYTHKAKPEIYALL
                     PISPDHLSWHGSFDNYVQDKLSVLKRMNECDVVILPKIYANTPTKAHKISYEDEKDLA
                     VKFGIDTEKISFKSPFLLDAIMALAIEKILLDTLSYKLLNSFVMEKNKLEELKDSQNR
                     LWVNDTKATNESAVMAALSRYKDKKIHLIIGGDDKGVDLSNLFDFMKGFDIELYAIGI
                     STEKMLDYAKKANLKAYKCEVLSKAVNEISNHLRVNEVALLSPACASLDQFNSYAERG
                     KVFKECVNKI"
     gene            complement(14318..15379)
                     /locus_tag="RJ259_000691"
     CDS             complement(14318..15379)
                     /locus_tag="RJ259_000691"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HDV7366420.1"
                     /translation="MYYLSDLSHYAFFTYISVRAGFAFFIALCLSLFLMPKFITWAKA
                     KNASQPIYEYAPETHKTKCHTPTMGGLIFISSAVIASLFCIKFDNIFAISALLCLILF
                     CLIGLIDDLGKVLKKDNHSGLSPRMKLLAQIIAGLICILPLYFSSELSTELFIPFYKH
                     PLFDMEIFAIAFWILVLISSSNAVNLTDGLDGLATVPGIFSLSTLGIFLYLSGNLNYS
                     EYLLLPKIQGLGEVVIICAALIGALMGFLWYNCYPAQVFMGDSGSLALGGFIGFLAVI
                     SKNEILLLLIGFVFVLETVSVILQVGSFKIFNKRVFKMAPIHHHFEKVGWVENKIIVR
                     FWMIALLSNLLALASIKLR"
     gene            15459..16937
                     /locus_tag="RJ259_000692"
     CDS             15459..16937
                     /locus_tag="RJ259_000692"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HDV7366421.1"
                     /translation="MKQKCVLIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNSLL
                     KTSGLAVGLPEGQMGNSEVGHMCIGSGRIIYQNLVRINKAIENKELEKNENLKKLLAK
                     CKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNGNEVFAHAITDGRDVSPKSGLNFIKD
                     LKEFCENLDVHFATLCGRFYAMDRDKRWDRVKEYYECLLGKAYKVPNLLEYLQKSYDE
                     NVTDEFIKAAQNENYKGMREEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFENL
                     LTMSVYDDKFKLPVLFEKEKIENTLAQVISKAGLSQLHTAETEKYAHVTFFFNGGKEE
                     LLENETRVLIPSPKVKTYDEKPQMSAFEVCDAVKKGIEKGEDFIVVNFANGDMVGHTG
                     DFNATIKAVEAVDTCLGEILECAKKHDYAFIITSDHGNCEAMQDEKGNLLTNHTTFDV
                     FVFVQARGVSKIKDNMGLSNIAASVLKILDLEIPKEMNEALF"
     gene            17009..17752
                     /gene="fabG"
                     /locus_tag="RJ259_000693"
     CDS             17009..17752
                     /gene="fabG"
                     /locus_tag="RJ259_000693"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDV7366422.1"
                     /translation="MKFSGKNVLITGASKGIGASIAKTLAGFGLKVWINYRSKPELAD
                     ALKDEIIASGGVAAVIKFDASKEDEFENGVKTIVESDGELSYLVNNAGVTNDKLALRM
                     KLEDFSGVVDTNLSSAFLGCREALKTMSKKRFGAVVNIASIVGEMGNAGQVNYSASKG
                     GMIAMTKSFAKEGASRNLRFNCVTPGFIKSDMTEVLSNEIKQTYQDNIPLKRFAEPEE
                     VANCVAFLLSDYASYVTGDVLKINGGLYM"
     gene            17759..>18160
                     /locus_tag="RJ259_000694"
     CDS             17759..>18160
                     /locus_tag="RJ259_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HDV7366423.1"
                     /translation="MMDLKEIAQFLDDNAPAFLATLGTCGNPRVRPIQSPLLVGDKIY
                     FCTANTKGLFKHIKNYNDIEFCSCAKDGTFLRLRANAVFEPNLEVKKMMFKKYPYLVN
                     LYETPQNPKFEVFYLDHLSARMQFMNGEFKLF"
BASE COUNT         6399 a         2636 c         3621 g         5504 t
ORIGIN      
        1 cggttcaggc tgcaagcaag gatggaaaaa ttttttatat ttctgaatat tcttttaagg
       61 ataatcaagt ttatgatcct caagcagaaa tttttaaaaa aattaatgga aaaaatttct
      121 atgcttctaa gtcaaaatac cctatatcaa atttaactat gatttataat aaccctaaat
      181 ctggaaataa aaatttatcc aagcttgaaa ttttaactcc ggatacttca aaagaagaga
      241 tcataacagc ttttagcact ttaggaaccg tatcttcaga tactcaagcc gttcctagtt
      301 cttttatgcc ttttattgta acagcttatg cgcaaaatac aaatgcaaca aataataaac
      361 ttatattaga aaatggagaa ttatcttctg tgtatttttg caaaccaagc ataggggatt
      421 gtggagtacc taataattct caaaaaggcg atcgttttaa gtatttaatt actgcggcgt
      481 ttactgacag gggggaggga tttaacaatc aaaccatttt aaaagaaaac tcctatatca
      541 ataatgggtg tagaaaatat ctacaccttg cccttaaatg gagttcctta tatttcagga
      601 tctgtagctt ttgatggtga agctaaagac aataaattaa tcttagagtc aaatacaaaa
      661 attgaccttc ataattccca gtatttttca gatgaagaag gtaaggatat ttatgatgaa
      721 agaattactc gtttaatggg agcttttggc ataaattcta atttacaaaa caataaagtt
      781 cttatcgatt cagccaatat cgtccttcat gggccagatg gtgagtatac agctcgttcg
      841 acctttgaaa ttttaggtgc tttagctgat gtaaataatc ttaaaaaata caatgtaagt
      901 aaaaattctg taataattaa aaatttaaat ttagatttaa tggtaaattc gcaaaataaa
      961 ataacttttt atgatgctgt tttatttgga gaaatttacg gtggaagaac attacagggt
     1021 aatgcagaga aaaattctat agaagtttat cattttaact cattagatca tcttaataaa
     1081 aacattaaaa cacatgcatc gttaaacctc tatggtgggt attctaatga tggtgaagct
     1141 aatggaaata aaattgtatt tcgtcttaaa aaacctttaa aaatcagtga taatttttat
     1201 ggaaaaaatt attacaatct ttacggaggt tttgctacag agggtgcgaa ttttaatgtt
     1261 tttgatatac aaaatgattt aacctatgaa aaagttccac aaaattattc tgataaattt
     1321 accgtatatg cggcaagaac tttaagtgga aaagcaaata ataatacctt aagtataaaa
     1381 gattctgtta tttcattgcc tttatatgct tttattacaa gtgaaactac gctagatggt
     1441 atagactata tcgccgatga atcaaacaat aatgaagtaa attttgaaaa tattaaatca
     1501 tctaaaaatt taagtttgat gatcaatgct aaaaatgttt caaataataa aataaattat
     1561 aatctcattc agagtttaac cgaagcgagt tctttaggaa agggctcaaa aattatttta
     1621 aaagcaactc aaaatgcaaa caacaatctt ataaagctta aagattgttc ttcggctgcc
     1681 gtggaaagtt cgtgcatcat aaaagcagat aaagaaagtg cttttaataa aatcatcaac
     1741 aacaacacag cttttagtac tgcctcagat aaaagacaag gttatgtggg gttgatagct
     1801 ggagtgtctg caaattctca tgataatatc atggagcttg ttaatttaaa tatagatgag
     1861 tataaaaatc aagatgctat atttttagct ccatctggaa cttcggatat ttcaaatttt
     1921 aaatcttata acaatacttt atatttaggt ggagagttga atttctttaa agatgtaaat
     1981 atcgatttgc tttctggttc tgtttttcat gaagtaaata aaaaaggtaa aataatcact
     2041 caaattctac cgcatcaaga agatttttct aaaaacaatc gtttgattat agatactcaa
     2101 gatgtcaaat cagaagtggt aaataacttt gaaaatttta cttttatttt accaaataaa
     2161 ataaaaaatc ctatcttgac tatagaaaaa cttatcaatc ttcctgcaaa tggaagtatg
     2221 gaaattctta ctaaaaataa accaacaaaa ggaaaatata ttctcataca aagtgatgtt
     2281 ggaatttatg atggtgacaa tggattgtta aatcaacaag aattagaaaa tttgttagaa
     2341 aaaatgaaaa ataataaaaa taaatttaat tacaacaaga tagaaaagtt ggctaaaagt
     2401 acattgaaaa atgtaaattt tagctttgaa gtttcagatg atgcaaaaat aatttatatc
     2461 aacatacttt aaaggagagt aacatgaaaa agatgagtaa acatatagtt ttatcatttg
     2521 cggtgagttc tttgctcttt tctcaagctt atgctttact aagtgggggt aaatttactc
     2581 atggtacaag tgggactatc catacctctg gcaatactgt aacgattaca ggaaaaggac
     2641 aaaatcatgt tatccaatgg ggtggcggtt ttaatatagg acaaaatgaa agtgtaaatt
     2701 ttaacggcaa aaatcaaaac tacctaaaca ttgcttatca aaaagatgct tctaagatag
     2761 acggagcttt aaatagaggg aataacaata tctttttagt taatcctatg ggagttttga
     2821 ttggcaaaac aggaactatt actgcgggaa aatttgtagc tagcacaaca gctttaagtg
     2881 atgataatgt caaaactttt ttagagaaag gagctagttt ctctccggca tttgatgtaa
     2941 gcaaacaagg aaatattata aatcttggaa agatcaatgc agataatatt gttttaatag
     3001 gaaataaggt tgaaatcaat aaaggaaaaa ttactttgga tgtattaaaa cttgaaggta
     3061 ataaagttta tgttgatgct ggagtggtaa aagatacaaa aaatatcgta gccaaagcag
     3121 agcaagaagc tatcattcaa caaagcataa caagttttga agaagatgga gctttattgg
     3181 gtaattctag tagtaaattt agttttgatg atagtagtaa agttaaaaac tggactaaat
     3241 atggaagtat tgcggatgca acagaatgga ataaatttgc tgatttttgg aatgtaaata
     3301 aagaaaaatt tagaacagct tttgatcatt ttcgtttgat tgatgatatt gattttagtg
     3361 gcgtgaaaac atacatagta ggtgataata caagcaatgc ttttgctaaa tctttcgatg
     3421 gttctggtta tgctttaaaa aatgttaata ttaattcatc aaatcaatat gtaggaattt
     3481 ttggagttgt tcaaaatagc tatataagaa actttaatat tcaaggattg aaaattgctt
     3541 caactggtta tgatgcttag ttggaggtat agtagggcaa aatattgcaa acagttatac
     3601 gggttttgaa aatgtgactg ttaatgatct cgttattaat acagctgtaa atactaaagt
     3661 tggcggaata ataggctggg gaaatggtag tggagggaat aacactatca attttacaaa
     3721 tgttgctatt aataatataa gtatagtagc aaagaaggtt cttatgtggg tggcataggc
     3781 agacaaattg atggtggtaa ttttaataat gttgtggtta atgacataga aaaacttata
     3841 acttctggga atgatagtaa aacaggagga tttactggaa aagttggaaa tttaaagatt
     3901 aataatgctt acttatttta taaaatggag caattttgag tgctggaaac tataaaacac
     3961 aagctggaaa agttattggt gatcctggaa ttagtgtaaa taataatttt agtaatattt
     4021 atgtttatca taatttagaa aatggttaca ttgatgaagg acagaatttt ttaagtctgt
     4081 gcaatataat aatgaagtaa caggaaaaaa agattttgat agtgctgtaa gaaagaaatt
     4141 taacgatata aaatatcttg ataataattc ttatgctttt gctgattctt ttaccaaggc
     4201 aacagatgct gtgaaattat ccaaagacga ctttgaccct aaattgcttc aaagaatttt
     4261 agatgatttg atgaatggaa aatacactta tgattttgat accaaaactt ggacttacac
     4321 agatagtaag ggtgtggtag gaaaagatga ggctagtgaa atcactcaaa gtttaaattt
     4381 cttaaatgcg tttaaagata cgggagtaga acaagaattt ttaaagttat ggcaaggttc
     4441 gcaagaacaa aattataaaa attataccaa tctttatgaa aaatggacgc aaaagaaaac
     4501 tgctatggat aaaatcaaaa ccggcgaagg ttatttcgct agttttaaag aagaattaca
     4561 aaaataccaa gaagccttag ctcaacttga caaagaaaat aaaaactatg aaaaaatcaa
     4621 agaatcaggc ttagttagcg atgaaacatt aagggctata tatgaaaaac ttttagaaca
     4681 aaaagaagct cttgaaaagc agtttgcgga tcttagtgga aatgaaggat ttcgctataa
     4741 gcttgaaaat gaaattctaa attctcaagg tttttctata gaaggtaaag atgtagatgg
     4801 taaagtatac actggaaatt ttaattttaa aggaaaatta gcctcattgc cagaaaaacc
     4861 aaatatatct atctatgagc cagataaaca agggggtgaa gatccagaca aaccttctgt
     4921 attgccgcct gaaattcctg aaaaggttgt agaagctcct ataaaaattc aaaccgaagt
     4981 agacgcaaaa aaaagaagaa gatgatgatc aagtggaaat aggagaagca gatgctagaa
     5041 gtagtggttt gcgttgtatt gtaagtgata attttaagac aatgaatatt tgtgtaaatg
     5101 caaaatagga aataaaaatg agaaaaattt tagttgtttt agtcttattg caagtatttt
     5161 cacatgctga agagctaaat aataataaaa taagagagct tatagaaagc tctcctgaag
     5221 caaatgaacc acaaaataaa aatttaaaaa atacattaaa aaatcaaaaa agccctgtaa
     5281 atttcaaaga gcaaaatact acaaatatta caaattcaca aactgatcaa aatgaagcta
     5341 aggtttttgt aagagagtat gttttgcata tcgataataa agatttgaca tttaaaaaat
     5401 taagaattag cgaaaaataa attcaagatg caatagctga atatcgcaac caagaattaa
     5461 gcttacaaaa tttaaaagat ataacaaaca ttatagctta ttattgtcaa ttaagtggcc
     5521 atccttcggc aactgcttat ataccaccgc aagatttaag ttctaacaaa gtgcaaatta
     5581 acatagcttt tggaacttta taggaaaagt aattattaaa aacaactcag gtgtcagaga
     5641 ttatgcttta gagagtaaat tgaacaaaaa tcttaaaggg aaagttatca caactaaaaa
     5701 tgtggaaaat gaaatttata aaatcaatga aatatacgga atccaaacca atgctaattt
     5761 acaatcaggt gatggttgtg gagaaagcga tgttattata gaagtaaaca aaggtgagat
     5821 agtgtaactt taactttata ttctaacaac tatgggacta aagaaacagg tcgttttaga
     5881 gcaggaatga gtcaaagttt aaacaatata gcaagataag gggataactt aaatttttat
     5941 cttcaagata gtgatgaaaa tcaaacagat tatgggatta attatagtac ttttataggg
     6001 aatttaaaaa ttactccatt tgcaactcaa ggacattatg ttcctggcag aatttataga
     6061 aatcttagtt tttataggga ctctatgaat gttggagtaa atttttctta tcctgtgttt
     6121 ttatatactg agtattcttt atatcttgtt tcgggtttta ctcataaaaa gattaaagat
     6181 tattatcttg atggtttagt aagcaatgaa aaagcgagaa atagtgtaaa tttgggcata
     6241 gaaagaactt atagaggttt ggagaataat gtcctaagtt atactttaaa ttttatatat
     6301 ggtaatgttg aaaatgatgg tgatttttct ggatttaatg gagtaaattt aggaaatttt
     6361 ggaaaaatga atttaaattt aagcaacaaa tatcaattct aagaacgctt aactcacatt
     6421 tttcaactca attatcaaaa agttatcagc gatgctgttt tagatagtag tgaatccgta
     6481 tctttaggta gaccttgtgg tgtatgtgtt tgtttagaag gtgagggaag tgcggataat
     6541 gttgtttctg gcgccttggg aataagattt caaacacctt tagaagggct ttactcgact
     6601 cctttttatg atatagggta ttcttggtat gaaaataaag aatatcaaag tgaaaatcat
     6661 tatcttatgg atgcaatggg tatataaata ctctatacaa gaagtgctaa tttttatgta
     6721 aaaatggatg ctgcaagagc tgttcatcag tttaaacacg atggagaaca tcgagcaaga
     6781 gtttatgcaa gcctagaaaa atacttttaa cttcggggtg attggaaaat cccccccccc
     6841 catttttaaa cccaccaaat acttatataa atacttacac aaatatttat actatttaat
     6901 cctttgttta atcccctttt aagtttaatt ggttatactt tcatttcctt ttttgaaaaa
     6961 aggacttaaa atcttttaaa ttataaagtt tcactagctt agtagatttt ataaattaac
     7021 tcttttggtt tttgtcttat aaactaaaag cttttttata aatcttgttt tttaatttaa
     7081 aaacttttct tttaaaaatg attttttgtt ttgttctttt aaattagtat tgttattcaa
     7141 atcttattag tcaatctttg aaatctaaat aagtgatcga ttgagccaga acagatttag
     7201 gcataagcaa ttatgtaaaa tctattcaat ctaataatta aaaagattaa aaacttttct
     7261 tttaatcttt cataactttt tctttgaaga aaaagattaa actatctata attttttatg
     7321 gagagtttga tcctggctca gagtgaacgc tggcggcgtg cctaatacat gcaagtcgaa
     7381 cgatgaagct tctagcttgc tagaagtgga ttagtggcgc acgggtgagt aaggtatagt
     7441 taatctgccc tacacaagag gacaacagtt ggaaacgact gctaatactc tatactcctg
     7501 cttaacacaa gttgagtagg gaaagttttt cggtgtagga tgagactata tagtatcagc
     7561 tagttggtaa ggtaatggct taccaaggct atgacgctta actggtctga gaggatgatc
     7621 agtcacactg gaactgagac acggtccaga ctcctacggg aggcagcagt agggaatatt
     7681 gcgcaatggg ggaaaccctg acgcagcaac gccgcgtgga ggatgacact tttcggagcg
     7741 taaactcctt ttcttaggga agaattctga cggtacctaa ggaataagca ccggctaact
     7801 ccgtgccagc agccgcggta atacggaggg tgcaagcgtt actcggaatc actgggcgta
     7861 aagggcgcgt aggcggatta tcaagtctct tgtgaaatct aatggcttaa ccattaaact
     7921 gcttgggaaa ctgatagtct agagtgaggg agaggcagat ggaattggtg gtgtaggggt
     7981 aaaatccgta gatatcacca agaataccca ttgcgaaggc gatctgctgg aactcaactg
     8041 acgctaaggc gcgaaagcgt ggggagcaaa caggattaga taccctggta gtccacgccc
     8101 taaacgatgt acactagttg ttggggtgct agtcatctca gtaatgcagc taacgcatta
     8161 agtgtaccgc ctggggagta cggtcgcaag attaaaactc aaaggaatag acggggaccc
     8221 gcacaagcgg tggagcatgt ggtttaattc gaagatacgc gaagaacctt acctgggctt
     8281 gatatcctaa gaaccttata gagatatgag ggtgctagct tgctagaact tagagacagg
     8341 tgctgcacgg ctgtcgtcag ctcgtgtcgt gagatgttgg gttaagtccc gcaacgagcg
     8401 caacccacgt atttagttgc taacggttcg gccgagcact ctaaatagac tgccttcgta
     8461 aggaggagga aggtgtggac gacgtcaagt catcatggcc cttatgccca gggcgacaca
     8521 cgtgctacaa tggcatatac aatgagacgc aataccgcga ggtggagcaa atctataaaa
     8581 tatgtcccag ttcggattgt tctctgcaac tcgagagcat gaagccggaa tcgctagtaa
     8641 tcgtagatca gccatgctac ggtgaatacg ttcccgggtc ttgtactcac cgcccgtcac
     8701 accatgggag ttgatttcac tcgaagccgg aatactaaac tagttaccgt ccacagtgga
     8761 atcagcgact ggggtgaagt cgtaacaagg taaccgtagg agaacctgcg gttggatcac
     8821 ctcctttcta gagtacaaag taataagtct cacaactatt acttcaatat ataaactcaa
     8881 ttgattcttg tttagatttc aaagattgat gataaagcta attgtttatg gggaattagc
     8941 tcagctggga gagcgcctgc tttgcacgca ggaggtcagc ggttcgatcc cgctattctc
     9001 caccatttat taagggccta tagctcagct ggttagagtg cacccctgat aagggtgagg
     9061 tcacaagttc aagtcttgtt aggcccacca taaaaaagat ttgaataaag aagctttaaa
     9121 atctaaagca agtatataaa atagattaaa tataaaatat aaactctata cttagattta
     9181 ttttttatct ttaactataa aagaatatac tttaatagat ataagtagca tatacattat
     9241 gcatttatat ttataatgat tatgttaata tatatacttc ctttaggttt taaacctaaa
     9301 tgttcttttt aattatcatt gttaagagtc acaagcaagt tttaataaaa acaattttac
     9361 aggacttgtt aaaggataaa acctatttat cttttcttta gtttaactta acttttagct
     9421 gtctttattt ctatgaataa agagaatatt ggatttaagg attataaatt aaagacaagt
     9481 ttcaaactca cagcttagtt gagactaaat catttagttt tatattaagt gtttgaatgc
     9541 tttccgtctt aagataaaga agtcttatca taaaaacttt aacaaggaag tgatgcgttt
     9601 tagaatcaat aataaaaggt aaaaaaggta agctactaag agcgaatggt ggatgccttg
     9661 actggtaaag gcgatgaagg acgtactaga ctgcgataag ctacggggag ctgtcaagaa
     9721 gctttgatcc gtagatttcc gaatggggca acccaatgta tagagatata cattacctat
     9781 ataggagcga acgaggggaa ttgaaacatc ttagtactct caggaaaaga aatcaataga
     9841 gattgcgtca gtagcggcga gcgaaagcgc aagagggcaa acccagtgct tgcactgggg
     9901 gttgtaggac tgcaatgtgc aagaggtaag tttagcagaa cattctggaa agtataacca
     9961 tagagggtga tagtcccgta tgcgaaaaac aaaccttagc tagcagtatc ctgagtaggg
    10021 cgggacacga ggaatcctgt ctgaatccgg gtcgaccacg atccaaccct aaatactaat
    10081 accagatcga tagtgcacaa gtaccgtgag ggaaaggtga aaagaactga ggtgatcaga
    10141 gtgaaataga acctgaaacc atttgcttac aatcattcag agccctatgt agcaatacag
    10201 ggtgatggac tgccttttgc ataatgagcc tgcgagttgt ggtgtctggc aaggttaagc
    10261 aaacgcgaag ccgtagcgaa agcgagtctg aatagggcgc ttagtcagat gctgcagacc
    10321 cgaaacgaag tgatctatcc atgagcaagt tgaagctagt gtaagaacta gtggaggact
    10381 gaacccatag gcgttgaaaa gccccgggat gacttgtgga taggggtgaa aggccaatca
    10441 aacttcgtga tagctggttc tctccgaaat atatttaggt atagcgttgt gtcgtaatat
    10501 aagggggtag agcactgaat gggctagggc atacaccaat gtaccaaacc ctatcaaact
    10561 ccgaatacct tatatgtaat cacagcagtc aggcggcgag tgataaaatc cgtcgtcaag
    10621 agggaaacaa cccagactac cagctaaggt ccctaaatct tacttaagtg gaaaacgatg
    10681 tgaagttact taaacaacca ggaggttggc ttagaagcag ccatccttta aagaaagcgt
    10741 aatagctcac tggtctagtg attttgcgcg gaaaatataa cggggctaaa gtaagtaccg
    10801 aagctgtaga cttagtttac taagtggtag gagagcgttc tatttgcgtc gaaggtatac
    10861 cggtaaggag tgctggagcg aatagaagtg agcatgcagg catgagtagc gataattaat
    10921 gtgagaatca ttaacgccgt aaacccaagg tttcctacgc gatgctcgtc atcgtagggt
    10981 tagtcgggtc ctaagtcgag tccgaaaggg gtagacgatg gcaaattggt taatattcca
    11041 ataccaacat tagtgtgcga tggaaggacg cttagggcta agggggctag cggatggaag
    11101 tgctagtcta aggtcgtagg aggttataca ggcaaatccg tataacaata ctccgagaac
    11161 tgaaaggctt tttgaagtct tcggatggat agaagaaccc ctgatgccgt cgagccaaga
    11221 aaagtttcta agtttagcta atgttgcccg taccgtaaac cgacacaggt gggtgggatg
    11281 agtattctaa ggcgcgtgga agaactctct ttaaggaact ctgcaaaata gcaccgtatc
    11341 ttcggtataa ggtgtggtta gctttgtatt aggatttact ccgaaagcaa ggaaacttac
    11401 aacaaagagt ccctcccgac tgtttaccaa aaacacagca ctctgctaac tcgtaagagg
    11461 atgtataggg tgtgacgcct gcccggtgct cgaaggttaa ttgatggggt tagcattagc
    11521 gaagctcttg atcgaagccc gagtaaacgg cggccgtaac tataacggtc ctaaggtagc
    11581 gaaattcctt gtcggttaaa taccgacctg catgaatggc gtaacgagat gggagctgtc
    11641 tcaaagaggg atccagtgaa attgtagtgg aggtgaaaat tcctcctacc cgcggcaaga
    11701 cggaaagacc ccgtggacct ttactacagc ttgacactgc tacttggata agaatgtgca
    11761 ggataggtgg gaggctttga gtatatgacg ccagttgtat atgagccatt gttgagatac
    11821 cactctttct tatttgggta gctaaccagc ttgagttatc ctcaagtggg acaatgtctg
    11881 gtgggtagtt tgactggggc ggtcgcctcc caaataataa cggaggctta caaaggttgg
    11941 ctcagaacgg ttggaaatcg ttcgtagagt ataaaggtat aagccagctt aactgcaaga
    12001 catacaagtc aagcagagac gaaagtcggt cttagtgatc cggtggttct gtgtggaagg
    12061 gccatcgctc aaaggataaa aggtaccccg gggataacag gctgatctcc cccaagagct
    12121 cacatcgacg gggaggtttg gcacctcgat gtcggctcat cgcatcctgg ggctggagca
    12181 ggtcccaagg gtatggctgt tcgccattta aagcggtacg cgagctgggt tcagaacgtc
    12241 gtgagacagt tcggtcccta tctgccgtgg gcgtaagaag attgaagaga tttgacccta
    12301 gtacgagagg accgggttga acaaaccact ggtgtagctg ttgttctgcc aagagcatcg
    12361 cagcgtagct aagtttggaa aggataaacg ctgaaagcat ctaagcgtga agccaactct
    12421 aagatgaatc ttctctaagc tctctagaag actactagtt tgataggctg ggtgtgtaat
    12481 ggatgaaagt cctttagctg accagtacta atagagcgtt tggcttatct ttaataaagc
    12541 atcacttcct tgttaaggtt tttagaagac tttgaatata gataatattt agagtttaat
    12601 agaaatcttt caagtagagt ttgtattaga acttgctctt aacattgttt tttaagtatt
    12661 ctatataaaa acttatcaaa gataagtaaa gaagaaagaa aaataaaaga agaaagagaa
    12721 taaagaaaaa agtaaagaaa taaaagatta ggctttattc ttaaattcag tctttcaaag
    12781 aatatttaaa taacaatgtc cgtgattata cagatgtgga aacgccttgc tccatcccga
    12841 accaagaagc taagcacatc gtgggtgatg atactacgcc ttactggcag ggggaaagta
    12901 gctcattgcg gacttgttaa atgtcttcat tacttacttt atatataaat cctatgttta
    12961 tttttattgt tgttttagat gatacttaga atcgtgttta aaaaagagtt tgctgctggt
    13021 tagggttttt agagagaata gggtgttttt aggggtttga aaatactaga aggataaaat
    13081 ttaaaatttt ctatgaaaag taaaataaat taaattttat tcacacattc tttaaagact
    13141 tttccacgct ctgcgtaaga gttgaactga tctaaacttg cacaagcggg acttaaaaga
    13201 gctacttcat tgactcttaa gtgatttgaa atttcattca cagctttaga taaaacttcg
    13261 catttatagg ctttcaaatt cgcttttttt gcataatcaa gcattttttc ggtactaata
    13321 cctatagcat agagttctat atcaaatcct ttcataaaat caaataaatt gctaagatct
    13381 acacccttat catctccccc tatgataaga tggatttttt tatctttata gcgactaagt
    13441 gcagccatta cagcactttc atttgtagct ttagtgtcat ttacccaaag cctattttga
    13501 ctgtctttaa gctcttcgag tttatttttt tccattacaa agctatttaa aagcttatag
    13561 cttaaagtat caagtaaaat tttttctata gctaaagcca tgatagcatc gagtaaaaaa
    13621 ggacttttaa aggaaatttt ttccgtatca atgccaaatt taacagctag atctttttca
    13681 tcttcatagc ttattttatg agcttttgtt ggagtatttg cataaatttt aggcagtatt
    13741 actacatcac attcattcat tctttttaaa acgcttagct tatcttgaac ataattatca
    13801 aaacttccat gccaagaaag atgatcagga cttataggta aaagtgcata aatttcaggt
    13861 ttagctttat gagtgtagtg tagggtaaaa gatgaagttt caagtatcca aagttttgca
    13921 taaggattaa gctctgctaa aggagttcca acatttccac ccataacagc accaatgtgt
    13981 gataataaat gtgtagccat ttgtgtggtg gtggttttgc cattggttcc gcttatccaa
    14041 acggattttg gcatgatatc ataaaaaaag tcatattcgc tttgtaaatt ttttgctttt
    14101 tgaatgagtt tgtgctttgg tggaaaacct ggactaggaa tttcaatatc gcttaaatta
    14161 tcatcaaaat cattaggatt taaaagtaaa tttcctagtg tatctttttt tgtttctgta
    14221 aaatgatcat cataaatatc aaaaggtcca aatttatcta ctaaattttc agcaatagca
    14281 cgtgtggttt ttccgtatcc aaaaagtgaa attttcatta tcttagcttt attgatgcaa
    14341 gtgcaagcaa atttgaaagt aaggctatca tccaaaaacg cactataatt ttattttcca
    14401 cccagccaac tttttcaaaa tgatgatgaa taggcgccat tttaaatact cttttattaa
    14461 aaattttaaa acttccaact tgtaaaatta cagaaacagt ttcaagaaca aaaacaaaac
    14521 ctatgagtaa aagtaaaatt tcatttttgc taataacggc taaaaatcct ataaagccac
    14581 ctaaagctaa acttccacta tctcccataa aaacttgtgc aggataacag ttgtaccata
    14641 aaaatcccat taaagcacca attagcgctg cacaaataat cactacttca ccaagtcctt
    14701 gaatttttgg caaaagtaga tattcactat aatttaaatt tccactcaaa tataagaata
    14761 tccctaaagt agataaagaa aaaatgcctg gaactgtagc taagccatca agtccatcgg
    14821 ttaaatttac agcattagag ctagaaatta aaaccaaaat ccaaaaagca atggcaaaaa
    14881 tttccatatc aaaaagaggg tgtttataaa aaggtataaa aagttccgtg ctaagctctg
    14941 aactaaaata taaaggtaag atgcagataa gtccagcgat gatttgtgct aaaagcttca
    15001 ttcttggact aagtcctgaa tgattatctt tttttagaac tttgcctaaa tcatctatga
    15061 gtcctatcaa acaaaaaagt atcaaacaaa gtaaagcact tatagcaaaa atattatcaa
    15121 atttgataca aaataaactt gcgattactg cagaactgat gaaaataagc ccacccatgg
    15181 ttggagtatg gcatttggtt ttatgagttt ctggggcgta ttcgtaaata ggttgactag
    15241 catttttagc ttttgcccaa gtaataaatt taggcattaa aaataaagac aaacataaag
    15301 cgataaaaaa tgcaaatcct gcacgcacac taatataagt aaaaaaagca taatgactta
    15361 aatctgaaag ataatacaaa acctagcctt ctttttggtt tttaaaagtt taattttagt
    15421 aaaatctaac caaaaaaatt cttataaaag agagaaaaat gaagcaaaaa tgcgttttaa
    15481 ttattacaga tggaataggg tataataaga atagtaagtt taatgctttt gaagcagcta
    15541 aaaaaccaag ttatgaaaag ctttttaagg aagtcccaaa ttctttacta aaaacgagtg
    15601 gtttagctgt aggtttgcca gaagggcaga tgggaaatag tgaagtaggg catatgtgta
    15661 taggaagtgg gcgtattatt tatcaaaatt tagtgcgtat taataaagcc attgaaaaca
    15721 aagaacttga aaaaaatgag aatttaaaaa aacttttagc aaaatgtaaa agagtgcata
    15781 ttatagggct ttatagtgat ggcggggtac attctatgga tacgcatttt aaagccatgc
    15841 ttgaaatttg tgcgaaaaat ggcaatgaag tttttgctca cgcaatcact gatgggcgtg
    15901 atgtaagtcc aaaaagtggc ttaaatttca taaaagattt aaaagaattt tgtgaaaact
    15961 tagacgtgca ttttgctacg ctttgtgggc gtttttatgc tatggataga gataagcgtt
    16021 gggatagggt aaaagagtat tatgagtgct tgttaggtaa ggcttataaa gtgccaaatt
    16081 tattagaata cctacaaaaa tcttacgatg aaaatgttac tgatgagttt atcaaagcag
    16141 ctcaaaatga gaattacaag ggcatgagag aagaagatgg cattatcttt atcaacttta
    16201 gaaatgatag aatgaaacaa cttgttgaag tgttaaattc taaggatttt aaagagtttg
    16261 aacgcgaaaa aatctttgaa aatttactta ctatgagtgt ttatgatgat aaatttaaac
    16321 tccctgtgct ttttgaaaaa gaaaaaattg aaaatacttt agcgcaagtg atttctaaag
    16381 cagggcttag tcagcttcat accgcagaaa ccgaaaaata cgcccatgta actttctttt
    16441 ttaatggcgg aaaagaagag cttttagaaa atgaaacaag ggttttaatc ccaagcccca
    16501 aggtaaaaac ttatgatgaa aaaccccaaa tgagtgcttt tgaagtgtgt gatgcagtga
    16561 aaaaaggcat agaaaagggt gaggatttta tagtggtaaa ttttgcaaat ggagatatgg
    16621 ttggacatac aggtgatttt aatgctacta taaaggctgt tgaagcggtg gatacttgtt
    16681 taggcgagat tttagaatgt gcaaaaaagc atgattatgc ttttatcatt acaagtgatc
    16741 atggaaattg cgaggctatg caagatgaaa aaggaaattt gcttaccaat cacaccactt
    16801 ttgatgtttt tgtttttgtg caagcaaggg gagtttcaaa gattaaagat aatatggggc
    16861 tgagtaatat agctgcaagc gtgcttaaaa ttttagactt agaaattcca aaagaaatga
    16921 atgaggcttt attttagttt gtttgccttt tttataagaa atttgttaag attgcaattt
    16981 ttaaaattaa acttattaag gatagataat gaaatttagt ggaaaaaatg ttttaattac
    17041 tggagcaagt aagggaatag gtgcttctat cgcaaaaact ttggcaggtt ttgggcttaa
    17101 agtttggatc aattatcgtt caaaacctga acttgcagat gctttaaaag atgaaattat
    17161 tgcaagtggt ggtgttgctg ctgtgattaa atttgatgca agcaaagaag atgagtttga
    17221 aaacggcgta aaaactatag ttgagagtga tggagagtta agttatcttg taaataacgc
    17281 aggcgttaca aatgataaac ttgctttaag aatgaaatta gaggacttta gtggcgttgt
    17341 ggatacgaat ttaagctcag cttttttagg ttgtagagaa gctttaaaaa ccatgagtaa
    17401 aaaacgcttt ggtgctgttg taaatatcgc ttctattgtc ggagaaatgg gcaatgctgg
    17461 gcaagtaaat tattctgcta gtaagggtgg aatgatagct atgactaaat cttttgctaa
    17521 agaaggagca agtagaaatt tacgctttaa ttgcgtaact ccaggtttta taaaaagcga
    17581 tatgactgaa gttttaagca atgaaatcaa acaaacctat caagataata tccctttaaa
    17641 acgctttgca gagcctgaag aagtagctaa ttgtgtagcg tttttactta gtgattatgc
    17701 ctcttatgtg acaggcgatg tgcttaagat caatggtggt ttatatatgt aaggaaaaat
    17761 gatggattta aaagaaatag cacaattttt agatgataat gcaccagcat ttttagccac
    17821 tttaggaact tgtggaaatc ctagagtgcg tcctatacaa agtccattgc ttgtgggaga
    17881 taaaatttat ttttgcacag caaatacaaa aggacttttt aagcatataa aaaattataa
    17941 tgatattgaa ttttgttctt gtgcaaaaga tgggactttt ttaagactta gagctaatgc
    18001 ggtttttgaa ccaaatttag aagttaaaaa aatgatgttt aaaaaatatc cttatcttgt
    18061 aaatctttat gaaactccgc aaaatccaaa atttgaagtt ttttatcttg atcatttaag
    18121 cgctagaatg caatttatga atggagaatt taagcttttt
//
LOCUS       DAPIWJ010000026        17941 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.026, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000026 DAPIWJ010000000
VERSION     DAPIWJ010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17941
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.026"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..818)
                     /locus_tag="RJ259_000695"
     CDS             complement(<1..818)
                     /locus_tag="RJ259_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366424.1"
                     /translation="MKFFLLVFCFVNLALAKVYKGELHFYHLQDKEIFAIVYDNAPMT
                     PLFDRDKNQTSSSFLIVDDINGNLEIPLVKINDFWQDERKKYKINSSKMLTYDNKNFQ
                     GENLGTTTLELVETQDGIRIKRSLDFIGFNDDFKEFHPVHKGVFSFEQIRQKPIFLQD
                     GKISFEEWYYFYEDGMSRAILELNNFVYDINAHAFVKLNDLYNTENQKFQNLLHEKLK
                     NTCDECFEDLQNLQFNNNFLLNNGKLKICYLPFEGHFLDENICVEFNEDELKEF"
     gene            complement(829..1305)
                     /locus_tag="RJ259_000696"
     CDS             complement(829..1305)
                     /locus_tag="RJ259_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366425.1"
                     /translation="MKHCLALCFVFFLCACSVKNQNFSSQSLMVLIASPMIKINDTAF
                     LKKENNALNLEVYKLGQAFFELKIKDKICINVVCYDKQVFNQKFFKNVYYDDILSDIL
                     KANPLWQGKNLEKTDCGFEQNLKAKNYEIFYQVCDNKVSFFDKISHTKIILTHIQN"
     gene            complement(1314..1805)
                     /locus_tag="RJ259_000697"
     CDS             complement(1314..1805)
                     /locus_tag="RJ259_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HDV7366426.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIDL
                     SEKESIFKLSSSSEGKLDVLKDIVISKLIKRGINPKAIKELSRESGAMFRLNLKANDA
                     IDSENAKKINKVIKDSKLKVNSSIRGEEIRVAAKQIDDLQAVMKLVKELDLELNISFK
                     NLK"
     gene            complement(1795..2730)
                     /locus_tag="RJ259_000698"
     CDS             complement(1795..2730)
                     /locus_tag="RJ259_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HDV7366427.1"
                     /translation="MKIVCLDAATLGDYDLSVFEKFGSLQIYTTTNKEQTIERLKDAN
                     VAMTNKVVIDKDVIDACKNLKLILETATGVNNIDIEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFMFAFLNQVLYYDKWSKEGKWCESPIFTDYSRILNTLSGKKHGIIGLGTIGKEV
                     AKISKAFGAEIYYYSTSGANKNADFVHLELKDLLKTCDIISIHAPLNEKTKNLLAFEE
                     LKLLKDNAILINVGRGGIVNENDLAKIIDEKNIRVGLDVLEIEPMMKNHPLLSIKNKE
                     NLIITPHVAWASKEALNALMDIVYNNLKEWIENGK"
     gene            complement(2733..3902)
                     /locus_tag="RJ259_000699"
     CDS             complement(2733..3902)
                     /locus_tag="RJ259_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HDV7366428.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISNKLVCVKESEAN
                     AYYEAVNELYDMFIAAAQEVINNDRFDELGIPFNLIDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWALLKQNGMDESAQFNSIYESLMDNFKRLI
                     TLDESVEGFEEHYQGWKILFSSVAGSKEEEITTKLLAHIANEAGFQTNFSFVDEVEFS
                     EEGIFKEGENYEYWFKLIPWEDIAIEEGELAMLLTQIMRNQRAIILNPAYTLLFQSKG
                     ILKILWELYPNHPLLLETKDTPLEGKNYVKKPVFGREGANISIIKDGKTLHENVGPYG
                     NNKAIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(3912..4517)
                     /locus_tag="RJ259_000700"
     CDS             complement(3912..4517)
                     /locus_tag="RJ259_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0323 family lipoprotein"
                     /protein_id="HDV7366429.1"
                     /translation="MKKIKKIIQIGMIGGLAAVAGGALAGCGSNNDNADTLNQAANAQ
                     GAFVIIEETAPGQYKIKDQYPSDETRVVLKDLNGTERILSKEEMDALIKEEAAKIDNG
                     TSNLTKDNGQISSGGLSLGETLLASAAGAILGSWIGSKLFNNQNFANQQRGAFSNQSA
                     YQRSVNSFNKAGTTSSASSAKKSGFFGGGSKATSSSSSFGS"
     gene            complement(4637..4849)
                     /locus_tag="RJ259_000701"
     CDS             complement(4637..4849)
                     /locus_tag="RJ259_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HDV7366430.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
     gene            5009..6385
                     /gene="ccoG"
                     /locus_tag="RJ259_000702"
     CDS             5009..6385
                     /gene="ccoG"
                     /locus_tag="RJ259_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HDV7366431.1"
                     /translation="MQGHITNYTKKRYFVYLIASIIIFSLPFIRINENHFFLLSFDHS
                     KLNLFFISFSTQEFYLMPFVLIFLFLFIFFITTLGGRIWCAWSCPQTIFRVIYRDIIQ
                     TKFLKIRKNINNKQKEYERQYFKKFLGVIIFYFISLVAVSNLLWYFIPPEDFFNYIQN
                     PGEHLLLLGILFCASLLFTLDITYLQEKFCVYVCPYARIQSVMFDHDTMQVIYDEKRG
                     GLIYDGHTKLHKKPPEGECIGCEACVSICPTHIDIRKGMQLECINCLECADACSKVQS
                     KFNRPSLINWTSAKAIETRSKVHYLRFRTIAYFIVLLIALLALIIMGSKKESMLLNIN
                     RSSELYNISNVKGELVISNAYTFLFQNTDSKPHEYYFTANLEGINDGIEIIRPNKPFK
                     LKAGEQVKKIVVIRATKNLANNDKKDVIFPLHIKAYAKDNEKISVFRKSIFVYPKSTL
                     IKDKNELK"
     gene            6372..7004
                     /gene="cmeR"
                     /locus_tag="RJ259_000703"
     CDS             6372..7004
                     /gene="cmeR"
                     /locus_tag="RJ259_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HDV7366432.1"
                     /translation="MNSNRTPSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSG
                     GSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIENGTLKEILTSFGLAFIEI
                     FNQPEAVAFGKIIYSQVYDKDRHLANWIENNQQNFSYNILMGFFKQQNNSYMKKNAEK
                     LAVLFCTMLKEPYHHLNVLINAPLKNKKEQKEHVEFVVNVFLNGINSSKA"
     gene            7099..8202
                     /gene="cmeA"
                     /locus_tag="RJ259_000704"
     CDS             7099..8202
                     /gene="cmeA"
                     /locus_tag="RJ259_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HDV7366433.1"
                     /translation="MKLFQKNTILALGVVLLLTACSKEEAPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIENKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMAKATFENASKDFNRSKALFSKSAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQNGKWDLDSIHANLNLNGETVQGKLYFIDSVIDANSGTVKAKAIFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIAVKQNQNDVYVLLVKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            8202..11312
                     /gene="cmeB"
                     /locus_tag="RJ259_000705"
     CDS             8202..11312
                     /gene="cmeB"
                     /locus_tag="RJ259_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HDV7366434.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGAIGLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALILAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPSSLVPEED
                     QGLMIGIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLKDWKDRNVSADEIAMELNKKFAFDRNASSIFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVAVANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKKR"
     gene            11318..12796
                     /gene="cmeC"
                     /locus_tag="RJ259_000706"
     CDS             11318..12796
                     /gene="cmeC"
                     /locus_tag="RJ259_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HDV7366435.1"
                     /translation="MNKIISISAIASFTLLISACSLSPNLNIPEANYSIDNKLGALSW
                     EKENNSSITKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSGF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENALKEAYKSAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNI
                     KYSYANSIVDVIKAFGGGFEQSEDTSKNIKEESKNLDMSFRE"
     gene            complement(12819..13070)
                     /locus_tag="RJ259_000707"
     CDS             complement(12819..13070)
                     /locus_tag="RJ259_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366436.1"
                     /translation="MDKAKIVQNLNALFKQRAEFYSYFDENIAKINNTEVFDFKNAKN
                     LNPEEVYKQFYHFDYAIRKLLPAIYKAYEITDADLDKDF"
     gene            13199..14545
                     /locus_tag="RJ259_000708"
     CDS             13199..14545
                     /locus_tag="RJ259_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HDV7366437.1"
                     /translation="MNLFQNLALKYSHTMMEKSLQKGFNVELLKQPEEKIPKQDKSYM
                     LYAHVPFCHTFCPYCSFHKYYYDENLAKVYFQNLREEIKIMKNKGFDFTSMYVGGGTT
                     LIDEEELLKTLELCKKLFNIKEISCESDPNHIDPNKLSMFKGIIDRLSCGIQSFDDET
                     LKKVARYNKFGSSKELQEKISKALGILPIFSIDLIFNLPGQNEKQLLNDLEIAKNLAP
                     QQITTYPLMKSNLTKDNIAKSLGVSIKDNEFTYYQIIREFFKDYTQNNGWSFSLEKNK
                     LNDEYVSSHHEYLGVGSGAFSFLDGELLINAFNLNDYAKFIQEKQNANIAKACFDKKE
                     IIKYVFLTEIFSGKIEIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIATEFG
                     QYLFVVLMKDFYTGMDLVRAVFRDDKRLKNKDYIDIMKENIDPLNSASMEFKAETN"
     gene            complement(14542..14994)
                     /gene="hemJ"
                     /locus_tag="RJ259_000709"
     CDS             complement(14542..14994)
                     /gene="hemJ"
                     /locus_tag="RJ259_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HDV7366438.1"
                     /translation="MTEWINDYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAEHKDNK
                     GFVEVVKIQERKLYYYIQTPAMIVTLITGSLMLHAHKEVLMVGAGFMHVKLTCVTLLI
                     IFHIHNYYCLKALANDTSTKSGKYFRIYNEFPTIMFIIIALMMVVRPF"
     gene            complement(14978..15448)
                     /locus_tag="RJ259_000710"
     CDS             complement(14978..15448)
                     /locus_tag="RJ259_000710"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HDV7366439.1"
                     /translation="MAKTFKFIFYFWGAFVLVFALDQWVKSLTLAGFRWQSEYLDLTY
                     ALNTGVAFSMLSFLEHNLKYLHLALIGVLFIYLFWQRTLLKTHSIAFGMMLGAGVSNL
                     LDRFIHGGVVDMFFWHKWFNFAIFNVADVMINISVALILIQEIFKKRKKDDRMD"
     gene            complement(15441..16778)
                     /locus_tag="RJ259_000711"
     CDS             complement(15441..16778)
                     /locus_tag="RJ259_000711"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HDV7366440.1"
                     /translation="MRLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSITNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYFDDKLIQASKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALHPVNLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALYLKEQGK
                     LQSSVVATIMSNGALKEFLNKHGIELDTCNVGDKYVLEKLKANGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLSKKKSASSILGQVKPYPQLLINLKIAEKKDLDKIKGLK
                     ELKKDLENKNINTLFRYSGTENLIRLLLEARDIKLLEKEMKNVVEFFKKALNG"
     gene            complement(16872..17897)
                     /locus_tag="RJ259_000712"
     CDS             complement(16872..17897)
                     /locus_tag="RJ259_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HDV7366441.1"
                     /translation="MKVKLLLIASLVAFSSLNAASLIDEAKNSGLVALPKDQKGVDEI
                     LKQNGVKASEFTLEKAELGKKLYFEPRLSKSGIISCNTCHNVGLGGTDGVSTAIGHKW
                     TANPHHLNSPTVYNAVLNNTQFWDGRAGTLADQAKGPIQADPEMATPAKLAVEKISSL
                     PEYVSEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDKFLEGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDANGMVKTPTLRNVAETAP
                     YFHNGAIWNLKDAIKEMGSVQLGIKISDKEAKSIETFLKSLTGTKPAIVYPQLPISTE
                     KTPKPEL"
BASE COUNT         6320 a         2977 c         2490 g         6154 t
ORIGIN      
        1 ttaaattcct taagctcatc ttcattaaat tctacgcaaa tattttcatc taaaaaatga
       61 ccttcaaaag gtagataaca aatttttagt tttccattat taagcaaaaa attattatta
      121 aattgtaaat tttgcagatc ttcaaaacac tcatcacatg tatttttaag cttctcatgt
      181 aaaagatttt gaaatttttg attttcagta ttatataaat catttagttt tacaaacgcg
      241 tgagcattaa tatcataaac aaaattattc aactctaaaa tagcacgact cataccatct
      301 tcataaaaat aataccattc ttcaaaacta atttttccat cttgtaaaaa aataggtttt
      361 tggcgaattt gttcaaaact aaatacaccc ttatgaacag gatgaaattc tttaaaatca
      421 tcattaaaac ctataaaatc aagactacgc tttatacgaa tgccatcttg cgtttcgaca
      481 agttctaaag tagttgttcc taaattttct ccttgaaaat ttttattatc atatgtaagc
      541 attttagaag aattgatttt atatttttta cgctcatctt gccaaaaatc atttatctta
      601 acgagtggaa tctctaaatt tccatttata tcatcaacaa ttaaaaaact agaacttgtt
      661 tgatttttat ccctgtcaaa aagtggagtc ataggtgcat tatcataaac tatggcaaaa
      721 atttctttat cctgtaaatg ataaaaatgc aattcacctt tataaacttt cgctaaagct
      781 agatttacaa agcaaaatac cagtaaaaaa aatttcaaac tctatccttc aattttgaat
      841 atgcgttaag ataattttag tatgtgaaat tttatcaaaa aaacttactt tattatcaca
      901 aacttgataa aaaatttcat aattttttgc ttttaaattt tgttcaaaac cacaatcagt
      961 tttttctaaa tttttaccct gccataaagg atttgccttt aaaatatcac ttaaaatatc
     1021 atcataatat acatttttaa aaaatttttg attaaacact tgtttatcat aacacactac
     1081 attgatacaa attttatctt tgattttgag ttcaaaaaaa gcttgcccta gtttataaac
     1141 ttctaaattt aaagcattat tttctttttt taaaaaagct gtatcattga tttttatcat
     1201 aggggaagca atcaaaacca tcaagctttg acttgaaaaa ttttgatttt tcacactaca
     1261 agcacaaaga aaaaaaacaa aacatagagc taaacaatgt ttcaaatttg accttatttg
     1321 agatttttaa aactaatatt taactctaaa tcaagctctt ttacaagctt catcacagct
     1381 tgtaaatcat cgatttgttt tgctgcaaca cgaatttctt caccacgaat cgaagaatta
     1441 actttaagct tgctatcttt aataacttta ttgatttttt tagcattttc actatcaata
     1501 gcatcgtttg ctttcaaatt taaacgaaac attgctccac tttcacgaga aagctcttta
     1561 atagctttag gattaattcc tcttttgata agtttagaaa tcactatatc ttttaaaaca
     1621 tcaagttttc cttcactaga agaactgagt ttaaaaatac tctctttttc gcttaaatca
     1681 atctcacact taattccttt taagtcataa cgactatcaa gttctttttt agcttgttca
     1741 aaagcatttt ttaactcttg tttatctaaa gctgctgaaa tatcaaaact atgttcactt
     1801 gccattttct atccattctt ttaaattatt ataaactata tccattaaag catttaaagc
     1861 ctccttgctc gcccacgcaa catgaggagt gataataaga ttttctttat ttttaatgct
     1921 taaaagtgga tgatttttca tcataggttc aatttctaaa acatcaagcc ctacacgaat
     1981 atttttttca tctatgattt tagctaaatc attttcattg acaatcccac ctcttcctac
     2041 attaatcaaa atcgcattat cttttaaaag ctttaattct tcaaaggcga gtaaattttt
     2101 ggttttttca tttaaaggtg cgtggatact tataatatcg caagttttta ataaatcttt
     2161 taattccaaa tgtacaaaat ctgcgttttt attagctcca ctcgtagaat aataataaat
     2221 ttcggctcca aaagcctttg aaatttttgc cacttcttta cctatggttc ctaaacctat
     2281 aataccatgt tttttaccac ttaaggtgtt taaaattcta ctataatctg taaaaatagg
     2341 actttcacac catttaccct ctttgctcca tttgtcataa taaagcactt gatttaaaaa
     2401 agcaaacata aatgcaaaag tatgttgcac cacactcata gtagaatacc cagcagcatt
     2461 ttttacaata ataccttttt ctttagcata ctcaatatcg atattattaa cccctgtagc
     2521 agtttccaaa atgagtttta aatttttaca agcatcaatc acatctttat caattacaac
     2581 cttgtttgtc atggcgacat tagcatcttt taaacgctct atggtttgct ctttatttgt
     2641 tgtggtataa atttgcaaag aaccaaattt ttcaaaaaca cttaaatcat aatcccctaa
     2701 agttgccgca tctaaacaaa caattttcat ttctaatcct ttataatatg tcctacaaat
     2761 ttagaataat tatcaagcac aagtcctcct tttctaaatc ctaagccaca cccttcataa
     2821 gcaaagaaaa cacctgcttg atagtattcg ttttcacatg aattaaactc tacatattct
     2881 tgataaatag ccttattatt cccataagga cctacattct catgcaaagt ttttccatct
     2941 ttaattatac tgatatttgc accttctcta ccaaaaacag gttttttaac atagttttta
     3001 ccttccaaag gagtatcttt tgtttctaaa agtaatggat gatttggata aagttcccat
     3061 agaattttta aaattccctt agattgaaat aaaagcgtat aagcaggatt taaaataatt
     3121 gctctttgat tacgcatgat ttgagttaaa agcatagcaa gttcaccctc ttctatggct
     3181 atatcttccc aaggaataag cttaaaccaa tactcataat tttcaccctc tttaaaaatt
     3241 ccttcttcac taaattctac ctcatctaca aaggaaaaat tagtttgaaa acctgcttca
     3301 ttggctatat gtgcaagcaa ttttgtagtg atttcctctt ctttacttcc tgcaacactt
     3361 gaaaaaagaa ttttccatcc ttgataatgc tcttcaaacc cttcaacact ttcatcaagg
     3421 gtaataagtc ttttaaaatt atccatcaaa ctttcataaa tgctgttaaa ttgtgcgctt
     3481 tcatccattc cattttgttt taaaagtgcc cattgtaaaa tcgcactttc aaaaagagca
     3541 gtaggggtat cagcattaaa ttctataagt tttataggct tgccatcaag tccacccgct
     3601 aaatcaaaac gcccatataa atgccaatga acctcatttt cccaactcat cttaatcgca
     3661 tcaataagat taaaaggaat tccaagctca tcaaaacgat cattattaat cacttcttgc
     3721 gctgcagcaa taaacatatc ataaagctca tttaccgctt cataataagc attagcttca
     3781 ctttccttaa cacaaactaa cttattgcta atataatcac ttccatcttc atctgtatgc
     3841 caagaaaaac ctatattttc taaataatct ttttgaagtt tgtctacttg taataattgc
     3901 attatttatc cttaagagcc aaaagaagaa ctagaacttg tggctttaga gcctccacca
     3961 aaaaaacctg attttttagc acttgaagca gagcttgttg tgcctgcttt attaaaacta
     4021 ttaacactcc tttgataagc actttgattt gaaaaagcac cgcgttgttg gttggcaaaa
     4081 ttttgattat tgaaaagttt tgaacctatc caacttccta aaatagcacc tgcagcactt
     4141 gcgagtaaag tttcccctaa actcaatccc ccactactga tttgtccatt gtctttagtt
     4201 aaatttgaag ttccattatc aattttagct gcttcttctt taatcaaagc atccatttct
     4261 tctttggata aaattctttc tgtaccatta agatctttta aaactaccct tgtttcatca
     4321 cttggatatt gatctttgat tttatactgc cctggagctg tttcttcgat aattacaaaa
     4381 gctccttgag cattagccgc ttgatttaaa gtatctgcat tgtcattatt acttccacaa
     4441 cctgctaaag cacctccagc aacagctgct aaaccaccta tcataccaat ttgaatgatt
     4501 tttttgattt ttttcataag tttatcctaa aaacagaaaa tttaaattag aaattttaac
     4561 aaaaaataat aaatactttt taatttaata ccaaatgaag tttgtagata taaaaaagcc
     4621 ctttcgggct tttgggttag agtcttgact cgtagcgtct aagcatataa agtcttttaa
     4681 gcattttttt gcgtgctgaa attttttgtt ttttgcgaat ttcagtcata ggctcaaaaa
     4741 atcttcttgc tcttacttca gtcacaacta gatttctatc tacttgtttt ttgaatttac
     4801 gatacgcttc atcaaaagac tcgttaggat gcaccttgat tcctggcaca gtcctcacca
     4861 cctttctgtg taaatttttg ttgtgaaata taattataaa acacttctta ttaattctaa
     4921 cttagaaagc atttaaaaat tgttttagtt tttatcggtt ataatcctta attacaaagt
     4981 gctaaaaaat tataattaag gtctaaaaat gcaaggacac attacaaact atacaaaaaa
     5041 acgatatttt gtatatttaa ttgcaagtat tatcatattt tccctacctt tcataagaat
     5101 taatgagaat catttttttc ttttaagttt tgatcattct aaattaaacc tattttttat
     5161 ttctttttca acacaagaat tttatctcat gccttttgtt cttatatttc tttttttatt
     5221 tatttttttt attacaactt taggtggaag aatttggtgt gcttggagtt gtccacaaac
     5281 gatttttaga gttatatata gagatatcat acaaactaaa tttcttaaaa ttcgcaaaaa
     5341 tatcaataac aaacaaaaag aatatgagag gcaatatttt aaaaaatttc ttggagtgat
     5401 aattttttat tttatatctt tagttgctgt tagtaattta ctttggtact ttattcctcc
     5461 tgaagatttt ttcaattata ttcaaaatcc tggcgagcat ctacttttac ttggaatttt
     5521 attttgtgct agcttacttt ttactttgga tattacctat ttacaagaaa aattttgtgt
     5581 ttatgtctgt ccttatgcaa gaatacaatc tgtaatgttc gatcatgata caatgcaagt
     5641 gatctacgat gaaaaacgcg ggggcttgat ctatgatgga cacaccaaac ttcataaaaa
     5701 accgcctgag ggagaatgca taggttgcga agcctgtgtt agtatctgtc caactcatat
     5761 tgacatacgc aaaggaatgc aacttgaatg tattaattgt cttgaatgtg ccgatgcttg
     5821 ctctaaggtt caaagcaaat ttaatcgtcc aagtttgatc aattggacaa gtgcaaaagc
     5881 tattgaaacg cgttctaagg ttcattattt aagatttaga acgatagcat attttatagt
     5941 tcttttaatt gctttactgg ctttaatcat catgggaagc aaaaaagaaa gcatgctttt
     6001 aaatatcaat cgtagtagtg aattatataa tatttcaaat gttaaaggtg aattagtcat
     6061 ttcaaatgct tatacctttt tgtttcaaaa tacagattct aaacctcatg aatattattt
     6121 tacagcaaat ttagaaggaa taaatgatgg aattgaaatc ataagaccaa acaaaccttt
     6181 taaattaaaa gcaggagaac aagtcaaaaa aatagttgtt atcagggcta caaaaaattt
     6241 agcaaataat gataaaaaag acgtaatctt tcctttacat ataaaagctt acgcaaagga
     6301 taatgaaaaa atttcggttt ttagaaaaag tatatttgta taccctaaaa gcactcttat
     6361 aaaggataaa aatgaactca aatagaacac catcacaaaa agttttagcc agacaagaaa
     6421 aaatcaaagc agtggcctta gagctttttt taacaaaagg ataccaagaa acaagtttga
     6481 gtgatattat taaattatct ggaggatctt attctaatat ttatgatggt tttaaaagta
     6541 aagaagggct attctttgaa attttagatg acatatgtaa aaaacacttt catcttattt
     6601 attccaaaac acaagaaatt gaaaatggca ctttaaaaga aattttaact tcttttggtt
     6661 tagcttttat agaaattttc aatcaaccag aagctgtagc ttttggtaaa attatctatt
     6721 ctcaagttta tgacaaagat agacatcttg ccaattggat agaaaataat caacaaaatt
     6781 tttcctataa catacttatg ggttttttca agcaacaaaa taattcttat atgaaaaaaa
     6841 atgcagaaaa acttgctgtt cttttttgca ctatgttaaa agaaccttat catcatctta
     6901 atgttttaat taacgctcct ttgaaaaata aaaaagaaca aaaagaacat gttgaatttg
     6961 ttgtaaatgt ttttctaaat ggaatcaata gctccaaagc ttaaaaaata attttattaa
     7021 ccaaaattaa gatataatta gccaaaaatt tttgtaataa aaattacaat ttttaattta
     7081 atttttcaag gcaaaaccat gaaattattt caaaaaaata ctattttagc tttaggtgtt
     7141 gtgcttttac tcactgcttg cagcaaagaa gaagcaccaa aaatacaaat gccgcctcaa
     7201 cctgtaacaa ccatgagtgc taaatctgaa gatttaccac ttagttttac ttaccctgct
     7261 aaacttgtca gtgattatga tgtcattata aagcctcaag ttagtggcgt aatagaaaat
     7321 aaacttttta aagctggaga taaagtaaaa aaaggacaaa cattatttat tatagaacaa
     7381 gacaaattta aagctagtgt tgattcggct tacggacaag ctttgatggc taaggcaact
     7441 ttcgaaaatg caagcaagga ttttaatcgt tctaaagctc tttttagtaa aagtgcaatc
     7501 tctcaaaagg aatacgactc ttctcttgct acatttaaca attcaaaagc tagtctagca
     7561 agtgctagag cacagcttgc aaatgcaaga attgatctag atcataccga aataaaagct
     7621 ccttttgatg gtactatagg agatgcttta gttaatatag gagattatgt aagtgcttca
     7681 acaactgaac tagttagagt tacaaattta aatcctattt acgcagattt ctttatttca
     7741 gatacagata aactaaattt agtccgcaat actcaaaatg gaaaatggga tttagacagc
     7801 attcatgcaa atttaaatct taatggagaa accgttcaag gcaaacttta ttttattgat
     7861 tctgttatag atgctaatag tggaacagta aaagccaaag ctatatttga caacaacaac
     7921 tcaacacttt taccaggtgc ttttgcaaca attacttcag aaggttttat acaaaaaaat
     7981 ggctttaaag tgcctcaaat agctgttaaa caaaatcaaa atgatgttta tgttcttctt
     8041 gttaaaaatg gaaaagtaga aaaatcttct gtacatataa gctaccaaaa caatgaatat
     8101 gccattattg acaaaggatt acaaaatggc gataaaatca ttttagataa ctttaaaaaa
     8161 attcaagttg gtagcgaagt taaagaaatt ggagcacaat aatgttttct aaatttttta
     8221 tcgaaagacc tgtttttgct tcagttgttg caattatcat ttctttagct ggagctatag
     8281 gtcttacaaa tttacctata gaacaatatc cttctttaac ccctcctaca gttaaagtaa
     8341 gtgcaactta cacaggagct gatgcacaaa ccattgcttc aacagttgca agtcctatcg
     8401 aagatgcaat caatggcgca gataatatga tttacatgga ttcaacttca agttcttcag
     8461 gaactatgag tttgactgtt tattttgata tcggtacaga tcctgatcaa gccaccatag
     8521 atgttaataa tagaatttca gccgcaactg caaaaatgcc agatgcagtt aaaaaacttg
     8581 gagtaacagt tagaaaaact tcctcaacaa cacttgctgc aatttctatg tattcaagtg
     8641 atggctcaat gagtgcagta gatgtatata actatatcac tttaaatgtt ttagatgagt
     8701 taaaaagggt tccaggagtt ggagatgcaa acgctatagg aaatcgtaat tattctttaa
     8761 gaatttggct caagcctgat ttattaaata aatttggaat cacagctact gatgtaattt
     8821 ctgcggttaa tgaccaaaat gcccaatacg caactggtaa aattggcgaa gaacctgtaa
     8881 cccaaaaatc cccttatgtt tattcaatca ctatgcaagg aagactacaa aatcctagtg
     8941 aatttgaaaa cattatttta agaacaaata atgatggatc atttttaaga cttaaagatg
     9001 tagctgatgt ggaaatagga tcacaacaat acagctcaca aggacgatta aatggcaatg
     9061 atgcagttcc aattatgatc aatcttcaat caggggcaaa cgcattgcat acagcagaac
     9121 ttgttcaagc taaaatgcaa gaactttcaa aaaattttcc aaaaggttta acatataaaa
     9181 ttccttacga tacaacaaaa tttgtaatag aatcaatcaa agaagttgtt aaaacttttg
     9241 ttgaagctct aattttagtt atcattgtta tgtatatgtt cttaaagaat ttccgtgcaa
     9301 cacttattcc tatgatagct gtacctgttt cattgttagg aacttttgct ggactttatg
     9361 ttttaggttt tagtattaac ttgcttacgc tttttgcttt aattttagcc atagggatcg
     9421 ttgtagatga tgcgattata gttgtagaaa atattgatag gattttacat gaaaatgagc
     9481 aaataagcgt aaaagatgct gctatccaag cgatgcaaga agttagctct ccggttattt
     9541 caattgttct tgtgctttgt gctgtttttg taccagtttc ttttatatca ggttttgttg
     9601 gagaaattca aagacaattt gctcttacct tagctatatc tgtaaccata tcaggttttg
     9661 ttgctcttac cttaacacct tctttatgtg cactcttttt gcgacgtaat gaaggagagc
     9721 catttaaatt tgtaaagaaa tttaatgatt tttttgattg gagtacctct gtatttagcg
     9781 caggagtagc atatattcta aaaagaacca ttcgttttgt tttaattttt tgtattatgc
     9841 ttggggcaat tttttatctc tataaagctg taccaagctc tttagttcct gaagaagatc
     9901 aaggtttgat gattggcatt atcaaccttc cttcggcttc agcactccat agaacaatct
     9961 cagaagttga tcacataagc caagaagttt taaaaactaa tggagttaaa gatgcaatgg
    10021 ctatgatagg atttgatctt tttacaagtt cactcaaaga aaatgccgct gcaatgttta
    10081 taggcttgaa agattggaaa gatagaaatg tgagtgctga tgaaatcgcc atggagctta
    10141 ataaaaaatt tgcttttgat cgcaatgctt caagtatatt tataggccta cctcctatac
    10201 ctggattaag tatcacaggc ggttttgaaa tgtatgttca aaacaaaagc ggaaaaagct
    10261 atgatgaaat acaaaaagat gtaaataaac ttgttgctgt ggccaaccaa agaaaagagc
    10321 tatcaagagt aagaacaacc cttgatacaa ctttccctca atacaagctt ataattgata
    10381 gagataaatt aaaacactac aatcttaaca tgcaagatgt ttttaacacg atgaatgcaa
    10441 ctataggcac ttattatgtt aatgattttt ctatgctagg taaaaacttc caagtaaata
    10501 tccgcgcaaa aggtgatttt agaaatacac aagatgcatt aaaaaatatt tttgtaagat
    10561 caaatgatgg aaaaatgata ccacttgatt ctttcttaac tttacaaaga agttcagggc
    10621 ctgatgatgt aaaacgattc aaccttttcc cagcggcaca agttcaaggt caacccgcac
    10681 caggttatac ttcaggtcaa gctatagaag cgattgctca agtagcaaaa gaaactttag
    10741 gggatgatta ttccatagct tggagtggat cagcttatca agaagtttct agtaaaggaa
    10801 cagcaagtta tgcttttgct ttaggtatga tatttgtctt tttaattcta gctgcccaat
    10861 atgaaagatg gcttatacct ttagcagttg taacagctgt accttttgcg gtatttggat
    10921 catttttatt ggtatattta aggggattta gcaatgacat atattttcaa acaggacttt
    10981 tgctcttgat tggactttca gctaaaaatg ctatcttaat cgtagaattt gcaatggaag
    11041 agcgctttaa aaaaggcaaa ggagtttttg aagcagctgt tgcagcagca aaacttcgtt
    11101 ttcgtcctat cataatgact tctttggcat ttacttttgg ggtcttgcca atgattttcg
    11161 caacaggagc aggaagtgct tcaagacact ctttaggaac agggcttatt ggtggaatga
    11221 tcgcagcatc aactttagcg atattctttg tgcctttatt tttctatctt ttagaaaatt
    11281 ttaatgaatg gctagataaa aaaaagaggt aaggttcatg aataaaataa tttcaattag
    11341 tgctatagca agttttactc ttttgatttc agcttgctct ttaagtccaa atttaaatat
    11401 tcccgaagca aactatagca ttgataataa gcttggagcc ttatcttggg aaaaagaaaa
    11461 caatagctct atcacaaaaa attggtggaa agactttgat gatgaaaatt taaataaagt
    11521 ggttgattta gcacttaaaa ataataatga tttaaaactt gctttcatac acatggaaca
    11581 agctgctgct caattaggta tagattttag cagtttgttg ccaaaatttg atggtagcgc
    11641 aagcggaagt cgtgcaaaaa cagctataaa tgctccaagc aatcgaactg gggaagtaag
    11701 ttacggtaat gattttaaaa tgggacttaa tttaagctat gaaatcgatc tttggggaaa
    11761 atatcgcgat acatatcgcg cctcaaaatc aggctttaaa gcaagtgagt atgattatga
    11821 agctgcaaga ctttctgtta tttcaaatac agttcaaact tattttaatc ttgtaaatgc
    11881 ttatgaaaat gaaaatgctc ttaaagaagc ctataaatct gcaaaagaaa tttataggat
    11941 taatgatgaa aaatttcaag ttggtgctgt aggtgaatat gaacttgctc aagcaagagc
    12001 caacttagaa agtatggctt tgcaatataa tgaagcaaag ttaaataaag aaaattacct
    12061 taaagcttta aaaattttaa cttcaaatga tttaaatgac atactttaca aaaatcaaag
    12121 ctatcaagtt tttaatctta aagaatttga cattccaact ggaatttcaa gtaccatctt
    12181 gcttcaacgt ccagatattg gctcttcttt agaaaaatta actcagcaaa attatcttgt
    12241 tggagtagct cgcacggctt tcttacctag cctttcttta acaggattat tgggatttga
    12301 aagcggggat ttagatacct tggttaaagg aggttctaag acttggaata taggtggaaa
    12361 ctttactctg cctatttttc attggggtga aatttaccaa aatgtaaatt tagccaagct
    12421 taataaagat gaagcttttg taaattatca aaatactttg attactgctt ttggagaaat
    12481 tcgctatgct ttagtagcta gaaaaactat acgcttacaa tacgataatg cacaagcaag
    12541 cgaacaatct tacaaaagaa tctatgaaat tgctaaagaa cgctatgata taggagaaat
    12601 gtctttgcaa gattatttag aggcacgtca aaattggctt aatgctgcgg ttgcttttaa
    12661 taatattaaa tattcttatg ccaattccat agtagatgta atcaaagcat ttggtggagg
    12721 atttgagcaa agtgaagata cgagtaaaaa tataaaagaa gaatcaaaaa atttagatat
    12781 gtcttttaga gaatagtttg ttctattctc taaataaatt aaaaatcttt gtctaaatct
    12841 gcatctgtaa tttcataagc cttgtaaata gcaggcaata attttcttat agcataatca
    12901 aaatgataaa attgcttata tacctcttct ggatttaaat ttttagcatt cttaaaatca
    12961 aatacttcag tattattgat tttggcaata ttttcatcaa aataagagta aaactctgct
    13021 ctttgtttaa acaaagcatt taaattttga acaattttgg ctttatccat ttttatatcc
    13081 tttttaaata atttaaaaac ttaatcccat tttttattta agaaataaaa aatttactcc
    13141 tattttagct aaaaattgat aaagttatgt cttaaatatt ttaatatata ggccacttat
    13201 gaatttattt caaaatttag ctttaaaata ctctcatact atgatggaaa aatccctcca
    13261 aaaaggtttc aatgtcgaac ttttaaaaca acccgaagaa aaaattccaa aacaagacaa
    13321 aagctatatg ctttatgccc atgtaccttt ttgccatact ttttgtcctt attgtagctt
    13381 tcataaatat tattatgatg aaaatttagc caaagtatat tttcaaaatc ttagagaaga
    13441 aattaaaatc atgaaaaata aaggttttga ttttacctcc atgtatgtgg gtggtggtac
    13501 aacactgatt gatgaagagg aattattaaa aaccttagaa ctttgtaaaa agttatttaa
    13561 tataaaagaa atttcatgcg aaagcgatcc aaatcatatt gatccaaata agctttctat
    13621 gtttaaaggt ataattgatc gtttaagttg cgggattcaa agttttgatg atgaaacttt
    13681 gaaaaaagtg gcaagatata ataaatttgg ttcatctaaa gaacttcaag aaaaaatttc
    13741 aaaagcttta ggaattttac ctatttttag tatagatctt attttcaatc ttccaggaca
    13801 aaacgaaaaa caacttttaa atgacttaga aattgctaaa aatttagccc cgcaacaaat
    13861 cacaacctat cctttaatga aatcaaatct taccaaagat aatatcgcta aaagtctagg
    13921 agtgagcatt aaagataatg aatttactta ttatcaaatc atacgagaat tttttaaaga
    13981 ctatacccaa aacaatggtt ggagtttttc tttagaaaaa aacaagctta atgacgaata
    14041 tgtcagttct catcatgaat acctaggagt aggcagcggg gcttttagct ttttagatgg
    14101 ggagctttta atcaatgcat ttaatctaaa tgattatgct aaatttatac aagaaaaaca
    14161 aaatgctaat atagccaaag cttgttttga taaaaaagaa attatcaaat atgtcttttt
    14221 aactgaaatt ttttcaggga aaatagaaat tgataaattt aataaaactc taaattgcaa
    14281 tctcgaaaaa gaacttttca tagaactttt aggacttaaa acaagtggtg ccatcataaa
    14341 agatcaaaat gctttaatcg caactgaatt tggtcaatat ctttttgtgg ttttaatgaa
    14401 agatttttac acaggaatgg atcttgtgcg cgcagtattt agagatgata agcgtcttaa
    14461 aaataaagat tatatcgata tcatgaaaga aaatattgat ccgcttaact ccgctagtat
    14521 ggaatttaaa gcggagacaa actaaaaggg acgaacaacc atcattaaag cgatgataat
    14581 aaacattata gttggaaatt cattataaat tctaaaatat tttccacttt tagtagaagt
    14641 atcatttgct aaagctttta aacaataata attatgtata tgaaaaataa tcaaaagtgt
    14701 aacacaggta agtttaacat gcataaaacc cgcacctacc attaaaactt ccttatgagc
    14761 atgcaacatt aaacttcctg tgattaaagt cacaatcatt gcaggagttt gtatataata
    14821 ataaagcttt ctttcttgaa tttttacaac ctcgacaaaa cctttattgt ctttatgttc
    14881 agcatgatac acaaaaagac gaggtaaata aaaaagaccc gccatccaag aaacaaatgc
    14941 caaataatgc acccatttaa tccaaaaata ataatcatta atccattctg tcatcttttt
    15001 tccttttttt aaatatttct tgtattaaaa tcaaagccac acttatattt atcatgacat
    15061 ctgcaacatt aaaaatagca aaattaaacc atttatgcca aaaaaacata tccactacac
    15121 ctccatgtat aaaacgatcc aataaatttg aaacgccggc accaagcatc attccaaaag
    15181 ctatgctatg agtttttaaa agtgttcttt gccaaaaaag ataaataaaa agcacgccaa
    15241 ttaaagcaag atgtaaatat tttaaattat gttctaaaaa actcaacatt gaaaaagcta
    15301 cgcctgtatt tagagcataa gttaaatcta ggtattcact ctgccatcta aatcctgcta
    15361 aagttaagga ttttacccat tgatcaaggg caaaaaccaa aacaaaggca ccccaaaaat
    15421 aaaaaataaa tttaaaagtt ttagccattt aaagctttct taaaaaactc cacaacattt
    15481 ttcatttctt tttctaagag cttaatatct ctggcttcta gtaaaagtct tatcaaattt
    15541 tctgttccag aatagcgaaa taaggtatta atatttttat tttctaaatc tttttttaat
    15601 tcttttaaac ctttaatttt atctaaatct tttttttctg caattttaag attgattaaa
    15661 agctgaggat aaggtttaac ttgacccaaa atagaacttg cagatttttt cttagaaagc
    15721 attaaagcac taaattgcaa ggcagctatc aaaccatctc cagtttttgc ataatcgcta
    15781 aaaataatat gcccactttg ttctccacca aaatttccac cattggcttt tagtttttca
    15841 agcacatatt tatcgccaac attacaagta tcaagttcta taccatgttt atttaaaaac
    15901 tcttttaaag caccattact cattatagta gccacaacac ttgattgtaa tttaccttgt
    15961 tctttaagat aaagtgccaa tacacccaat aaactatccc cattagccac ttcgcctttt
    16021 tcatctacaa ccaccaaacg atctgcatca ccatcaaaag caaagcccac atctgcacgc
    16081 aaacgcttta cctcagcagc taagtttaca ggatgcaaag ctccacaatt ttcattgata
    16141 ttaagtccat taggtttatc actcattact ataacttcag cgcctaattc cttaaaaaca
    16201 gtaggtgcta ccttataagc tgccccatga gccacatcta aaacaacacg caaagacttt
    16261 aaagtaagat cttttggaaa agaattttta atagaaacaa tatatcttcc tataacatca
    16321 tcaattcttt ttgcttgacc aattttttcc atatctacct tagaggcttg tataagctta
    16381 tcatcaaaat aaatttcttc tatttttttc tctatatctt cactgagttt atttccatga
    16441 gcatcaaaaa atttaatacc gttatcataa taaggattgt gagaagctga aatcataatc
    16501 cctgcgtcac aacgcatatc ttcagttaag aatgcaatcg caggagttgg cataggacca
    16561 atttgtataa cattatatcc tatagaagta agccctgaaa caatagcatt ttctatcata
    16621 tagccacttc ttcttgtatc ttttcctact aagatattat tagtaatact tttatcttta
    16681 aaataaatac ccgcagccat tgctaaacgc atagccaaaa aactatctaa aaattcaccc
    16741 gcttttccac gaactccatc agttccaaaa agtctcattg caaacctttc tagcaaaatt
    16801 taaagacaat tataacaaag ctaagataaa gaaatttaaa caagctctaa aaatagagct
    16861 tgtttggaac cttatagttc aggtttagga gttttttcag tagaaatagg aagttgtgga
    16921 taaacaattg ctggttttgt tcctgttaag gattttaaga aagtttcaat actttttgct
    16981 tctttatcag aaattttaat gccaagttgc acactaccca tttccttaat agcatctttt
    17041 agattccaaa tagcgccatt atgaaaatat ggagcagttt cagcaacatt tcttaaagtt
    17101 ggagttttta ccatgccatt tgcatcacct ttaaaatcac ctaaatttgc aaatttatat
    17161 ttaccagcaa cttcaaacgc ttgcatattg ccacctaaat tcacaccatt atgacaagct
    17221 acacaaccct tgtctataaa aagctttaag cctttttgct cttcttttgt taaagctttt
    17281 tcatcgcctt ctaaaaattt atcaaaacga gatggagtga tcaaggttct ttcaaaattt
    17341 gcaattgcat cagcaatatt gtcaaaattt acaccacttt taccatagat ttttttaaac
    17401 tcactcacat attcaggcaa tgatgaaatt ttttctactg cgagtttagc aggagttgcc
    17461 atttcaggat cagcttggat tggaccttta gcttgatcgg ctaatgttcc tgcacgacca
    17521 tcccaaaatt gagtattatt taaaaccgca ttataaactg ttggtgaatt taaatgatgg
    17581 ggatttgctg tccatttatg acctattgca gtactaaccc catctgttcc accaagtcct
    17641 acattgtgac aggtattaca agaaatgata ccactttttg aaaggcgtgg ttcaaaataa
    17701 agctttttgc caagctctgc tttttcaaga gtaaattcac tagcctttac tccattttgt
    17761 tttaaaattt catcaacgcc tttttgatct tttggtaagg caacaagacc tgaattttta
    17821 gcttcatcta taagacttgc agcatttaag cttgaaaaag caactaagga tgctattagc
    17881 aataatttta ctttcattta caaactccta ttaaagataa attaaaataa aataataatc
    17941 a
//
LOCUS       DAPIWJ010000027        17199 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.027, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000027 DAPIWJ010000000
VERSION     DAPIWJ010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17199)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17199)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17199
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.027"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            107..1084
                     /locus_tag="RJ259_000713"
     CDS             107..1084
                     /locus_tag="RJ259_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HDV7366442.1"
                     /translation="MLKRLALLIALSSLMLHASDLVKIYLNQGLDAVGVAIEKELTQK
                     DFWLSEIGDKNISLGYYDDNVAIVLTNKTDKILRVYSYEDGKIRKDFEQKEIITGLMG
                     DKKIEGDLKTPVGFYELGRKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYP
                     LDGSRLDEFKTRGCIALFNNNLEKFAKVVQDKKVFVMTEEKEKIRAKKDQIASLLADL
                     FTWKLAWTNSDTNAYLSFYDEQEFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINI
                     SPYPNLENETMYRISFYEDYYTKNYRFRGDKILYVKIDSKGKMKILAEQ"
     gene            1085..2071
                     /locus_tag="RJ259_000714"
     CDS             1085..2071
                     /locus_tag="RJ259_000714"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HDV7366443.1"
                     /translation="MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLL
                     APLAKNLGVSFVAVKSEEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNY
                     KQDIKIHLKIDTGMHRNGICVENLEHAINLIQGSDLKLTGMFTHFASADEMDGSFFVQ
                     KENFQKAKKIVKKYFSNLLFHSYNSAALFRGKIPEDEYCRVGLVQFGYGDSNLKRVLS
                     LYAHRLSQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFRYNGRGELVLGNGKA
                     MLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLNPNIQRVLV"
     gene            2074..2541
                     /locus_tag="RJ259_000715"
     CDS             2074..2541
                     /locus_tag="RJ259_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HDV7366444.1"
                     /translation="MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPIVFDISQKAV
                     RRAGLDYWDKLEPIIWENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFG
                     SESYGLPMELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFRNFAS"
     gene            2645..4111
                     /locus_tag="RJ259_000716"
     CDS             2645..4111
                     /locus_tag="RJ259_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HDV7366445.1"
                     /translation="MNLDIMLDFANKASDIIANKIVPNTDIIMVVLLIVCGLYYSFLT
                     RFVQFRMLSSVFKILTEKNEGHAKEHISPFQALMISTASRVGIGNIAGISLALATGGA
                     GALFWMWVMAFFGGASAFAESTLAQVYKSKDDTGGFKGGPAYYIKKALGSHFFGAFFA
                     FILIITYAYGFNGLQSQTMTSSFKVYYDMFNPNAAVDFASSSWPMIIGIVLTIFGAWM
                     FFSHHTKIGKISSLIVPFMALAYVLLAVIAVLMNFDKIPSVIHMILQSAFDFKAIFGG
                     FAGSALVIGIKRGLFSNEAGMGSAPNAAAAALTSHPAKQGVIQAFSVLIDVVVCTSSG
                     FLVLFSMAYLGLGENKIDGGMPLVQEAMREYYGSFGIHFITIAIVLFAITSLIGNYYY
                     AQANVKYLTNSKFVMNLFRITAVAMIFIGSQMNLKLAWNLADLTMAFMATTNIISLLL
                     LGGIVNKVLKDFNTQQKSGIDPKFNASKLGIKNAECWD"
     gene            complement(4139..4867)
                     /locus_tag="RJ259_000717"
     CDS             complement(4139..4867)
                     /locus_tag="RJ259_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDV7366446.1"
                     /translation="MIEVKNLQKKYGELEVLKNINTTISKGDVIAIIGPSGGGKSTFL
                     RCINRLELADSGEILINKQNILDKEIDINKIRQKVSMVFQHFNLFANKNVMENLCLTP
                     IKTGILSQEEAIKKAKLLLAKVGLADKENIMPHKLSGGQKQRIAIARSLMMNPDVILF
                     DEPTSALDPEMIGEVLSIMKDVAKEGLTMLVVTHEMGFARNVANRIFFMDKGKIAVDA
                     SPKEVFENPSNERLREFLNKVLNH"
     gene            complement(4860..5603)
                     /locus_tag="RJ259_000718"
     CDS             complement(4860..5603)
                     /locus_tag="RJ259_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7366447.1"
                     /translation="MNQKNIRIFVFFVIIILWGYFSFPIEILKIQDPSGVASYGYTEN
                     AKAYLKSYLITLLLTACAVIIGVIIGFSLAILRFSKFKTLNFIIDEYIDIIRGTPVIL
                     QLMIFAFVIFTFIDNLYAAILALGLNSSAYIAEIVRSGINSVDKGQMEAARAMGLDYK
                     TSMKEIILPQATKNILPALANEFISLFKETSVVGFISVIDITMQSQSLQAVLYNPKPI
                     IFTGLVYYVSVKIFSYFAKKLELRMNKND"
     gene            5686..5865
                     /locus_tag="RJ259_000719"
     CDS             5686..5865
                     /locus_tag="RJ259_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366448.1"
                     /translation="MLEFPKNKVVFMEILDFILIVIFVFLMIVLVIGFNHQMMQKNKE
                     REERFKKYKKGEQNE"
     gene            5858..6427
                     /locus_tag="RJ259_000720"
     CDS             5858..6427
                     /locus_tag="RJ259_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HDV7366449.1"
                     /translation="MSKKVLIPLAQGFEEAEFIGIADVLKRAKELNPDLEVVIASLNS
                     ELLVKGANSISIKADCSIEDVDIENLDAIALAGGFEGMMNLKNSNVILNIIKQLHSKN
                     KIVAAICASPIVLNEAGVLEGEFACYPSCEVGLNGNRVNKAVVVNKNVITSAGPATAI
                     LFGLELAKKLCGDEIYQKLYEGMLLPLTK"
     gene            complement(6457..6822)
                     /locus_tag="RJ259_000721"
     CDS             complement(6457..6822)
                     /locus_tag="RJ259_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HDV7366450.1"
                     /translation="MQEKTIFELIVEGKLPCNKVLESDDFLAFHDIAPKAPIHILIIP
                     KKYFKDFQEFDPELMAKMTSFIQELAVLLGVDKSGYRLVTNCGKNSGQEVFHLHFHML
                     GGFELPKEKTKKENPQALF"
     gene            6945..7937
                     /gene="pheS"
                     /locus_tag="RJ259_000722"
     CDS             6945..7937
                     /gene="pheS"
                     /locus_tag="RJ259_000722"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HDV7366451.1"
                     /translation="MQNFIEQIQKCENLNDLEAIRISVLGKKGILTEGFTKLKELEDE
                     AKKEFAAKLNAQKEIFNEAYLAKFKDLENLALEERMKQDALNFNYFDESITTGALHPV
                     MSTMDKIIEYFIALNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLR
                     TQTSPVQIRTMLAQKPPIRMIAPGAVFRRDFDITHTPMFHQVEGLVVEEGQKVSFANL
                     KSVLEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGKGCRVCKHTGWLEVLG
                     CGIVDPNVYNFVGYENVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR"
     gene            7934..10255
                     /locus_tag="RJ259_000723"
     CDS             7934..10255
                     /locus_tag="RJ259_000723"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HDV7366452.1"
                     /translation="MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDK
                     VVVGYVKEKIKHENSDKLSICQVDIGSEILQIVCGAANVDAGQFVTVATKGAIMPNGM
                     EIKEAKLRGVDSCGMLCSSLELGFEKINEGIMLLDESIGKLELGRPLNTYEIFNDELI
                     EVELTPNRGDCLSIYGIARDLAAALNLNLKEPKPFKESENVLGIGRILRLAAEKELNG
                     LYNYRAIGLKEEIQTNLLLSLRLAQIEGLGKNSIENLLNYATHSTGVLFNAYDLSSFS
                     EKDEEFTINLSKQVHGETKVSYKDKLLSFSGIFQNNESRCKDDSKIIIIEANYTDPLV
                     IADAKIYHKDQDEKMLYRSFRGSEPKLNLGMDFLLGIFEQIPNLVIYSSSQQILTDKE
                     LPIIPISIEGISDIIGQNVDKDEVLKILKKLGFELILSGEGLINVKAPLHRPDIKNLS
                     DICEEVVRIIGIDNIASKGLEFIEKNRLNSAYKNYIEFLNLRKRAVASGYFESLHYVL
                     DNGEELKRLGFDSVKLKLINPITAELNTLRTTLLNHLLNAASLNAKNSKKIIKLFELG
                     AVFNVNNQELNRIAFIHSGLKEEAKISNKAKPESVQFYDFLLDIKNIIGDFKLKSSKY
                     NILSPYEQADIYLSDIKVGFIGRLHLKIENERDLPKTYICELDLDLIRQDFKIAKPYS
                     KFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFRLVDIYSDENLKEFYSITISF
                     SFRDINKTLEDNQVNECMDKILNTLKNLGLDLR"
     gene            10252..11538
                     /gene="aroA"
                     /locus_tag="RJ259_000724"
     CDS             10252..11538
                     /gene="aroA"
                     /locus_tag="RJ259_000724"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HDV7366453.1"
                     /translation="MKIYKLQTPVNAILENIAADKSISHRFAIFSLLTQEENKAQNYL
                     LAQDTLNTLEIIKNLGAKIEQKDSCVKIIPPKEILSPNCILDCGNSGTAMRLMIGFLA
                     GISGFFVLSGDKYLNNRPMRRISKPLTQIGARIYGRNEANLAPLCIEGQNLKAFNFKS
                     EISSAQVKTAMILSAFRADNVCTFSEISLSRNHSENMLKAMKAPIRVSNDGLSLEINP
                     LKKPLKAQNIIIPNDPSSAFYFVLAAIILPKSQIILKNILLNPTRIEAYKILQKMGAK
                     LEMTITQNDFETIGEIRVESSKLNGIEVKDNIAWLIDEAPALAIAFALAKGKSSLINA
                     KELRVKESDRIAVMVENLKLCGVEARELDDGFEIEGGCELKSSKIKSYGDHRIAMSFA
                     ILGLLCGIEIDDSDCIKTSFPNFIEILSNLGARIDY"
     gene            11528..12361
                     /locus_tag="RJ259_000725"
     CDS             11528..12361
                     /locus_tag="RJ259_000725"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HDV7366454.1"
                     /translation="MIIELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEISRL
                     QKNFNVKTLENIQALSNEKKAIIRTHGITKQDLEELRKKDIEIFDATCPFVTKPQQIC
                     EQMSKEGYEVVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNIKLPNKIAVVSQTTK
                     KPEHFMEIVNFLILKTKEVRVFNTICDATFKNQDAIKELSLKSDVMVVVGGKNSANTK
                     QLFLIAKTNCEDSYLIETEEELKKEWFLDKKHCGISAGASTPDWIIQKVIAKIENFRI
                     N"
     gene            12493..14163
                     /locus_tag="RJ259_000726"
     CDS             12493..14163
                     /locus_tag="RJ259_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HDV7366455.1"
                     /translation="MSEVNKKVQDGVDDYLEEEDFGQLLEAFDKSREEATIEGVIVEI
                     KNDEVYVDIGKKSEGILALSEIQGDNSKLLFNVGDSIKVAVMGSRGGRSLLSHKKALR
                     KEKVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPKSQYGFKETNNIIG
                     KTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGM
                     FVDVGGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPD
                     PWSEIKDTLDIGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYIN
                     KGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEITSVTSFGAFV
                     KLGGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKISLSTKELSSSPV
                     QEYAKIHKVGDIVKGAIRDIKDFGVFVELSKNVDALIHKEDISTSMLENLKIGDDIEA
                     AIVFIDEKKNRIRLSVKNLVRIKEREVLNEINNDDKVTLGDIIKDQLA"
     gene            14163..14651
                     /locus_tag="RJ259_000727"
     CDS             14163..14651
                     /locus_tag="RJ259_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366456.1"
                     /translation="MKKYITISILSILLLILLAVVFTLLWQFKANVNFIPQFAKDTNT
                     QPSIQTQNQDLSWQEELAKWPTRDFTPAAEKFTLYFDADTSELKEKNKYYQLIVGKYD
                     IYSMFCLRQTLNSFNVKYFLLKSGHSPEIFLDTGNEKLIDDIIKELKKYKINTEVKEI
                     WL"
     gene            14648..16231
                     /locus_tag="RJ259_000728"
     CDS             14648..16231
                     /locus_tag="RJ259_000728"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HDV7366457.1"
                     /translation="MKKKIIVCDAILDKGVDILRKAEDIELIEAAKFPKDELMQMLSD
                     IEVAITRSSTDVDVNFLNHAKKLKALVRAGVGVDNVDIPECSKRGVIVMNVPTANTIA
                     AVELTMAHLLTSARSFVNAHNFLKIERKWEREKWYGIELMNKTLGVIGFGNIGSRVAI
                     RAKAFGMKILAYDPYISASKITDLDMEQAKNLDEILEKSDFITIHTPKTKETNGMIGK
                     QEIAKMKDGIRLINCARGGLYTEEALYEGLKSGKIAWLGIDVFDKEPATNHPLLDFEN
                     ISVTSHLGANTLESQDNIAREACEQALSAARGVAYPNALNLPIKTEDLPPFVAPYIEL
                     VSKMAFLAVQIDKNPIKSIKLEAEGIIGEYANSMLTFAAVGALGGILGEKINYVNAEF
                     VAKEKGVELSCETLPNSGYNNKLSVKIITENSNISVSGTVFNENEQRIVGLNGFKTDF
                     KPKGKMIIFKNKDIPGVIAKISSVLAAKNINIADFRLGRDGFGYALAVVLIDEKVQKE
                     VLDELKQLEACVFVQYVEI"
     gene            16218..16880
                     /locus_tag="RJ259_000729"
     CDS             16218..16880
                     /locus_tag="RJ259_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDV7366458.1"
                     /translation="MLKFKILIIEDDIDLNELLVLKLKSSGYEVISLADFFGVEDLLD
                     NEQIDLLIVDRNLPSGDSLEKIQDLREQGYKEAVIFLTAKALHQDLLEGFESGCDDYV
                     CKPFDFNELLLRIKAILKRHKKEEEKLSFGDFILDLVSYEFFYKNQKLEISNLDYELL
                     KCFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGIGYK
                     LC"
     gene            16874..>17199
                     /locus_tag="RJ259_000730"
     CDS             16874..>17199
                     /locus_tag="RJ259_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HDV7366459.1"
                     /translation="MLKTKNIFIVFFVVLALIFGFIFYTFTNSYLNFLLIKQYEQKIK
                     SLDDVLKFSLLEHLNDANIKDFAKDTRADFIILNNDMKISSVKNPDFFSNLKEGEILN
                     FNSKKIL"
BASE COUNT         6228 a         2061 c         3026 g         5884 t
ORIGIN      
        1 ataaataagg ctgcattgtt aatataatta atatttttta agaaaaaaaa tattataatc
       61 acaaacattt ttgacttaaa aaatttgaaa tacctaagga aaaacattgt taaaacgact
      121 tgctttatta attgcacttt cttcattgat gttgcatgcc tcagatcttg ttaaaattta
      181 tcttaatcaa ggattagatg ctgttggtgt agcgattgaa aaagaattaa ctcaaaagga
      241 tttttggtta agtgaaatag gagataaaaa tatttcactt ggatactatg atgataatgt
      301 tgctatcgtg cttacaaata aaacagataa aattctccgt gtttattctt acgaggacgg
      361 aaaaataaga aaagattttg aacaaaaaga aataataact ggattaatgg gtgataaaaa
      421 aatagaagga gatttgaaaa ctccagtagg tttttatgag ttaggccgta agtttaatcc
      481 aggtgatcct tattatggtc cctttgcttt tgccacaact tatccaaatt tacttgataa
      541 agtacaagga aaaacaggtg gtggtatttg gatccatggc tatcctttag atggttctag
      601 acttgatgaa tttaaaacaa gagggtgtat tgctttattt aataataatt tggagaaatt
      661 tgcaaaagtt gtgcaagata aaaaagtttt tgttatgaca gaagaaaaag aaaaaattag
      721 agctaaaaag gatcaaatcg ctagtttatt ggctgatctt tttacatgga aactagcttg
      781 gacaaatagt gacactaatg cctatttaag tttttatgat gagcaagaat ttaaacgttt
      841 tgataaaatg aaatttgaac agtttgcttc catgaaaaaa tctatttttt ctcgtaaaga
      901 agataaaaag attaaatttt cagatattaa tatcagccct tatccgaatt tagaaaatga
      961 aactatgtat agaatttcat tttatgagga ttattacact aaaaactatc ggtttagagg
     1021 cgataaaatt ttatacgtta agatagatag taaaggtaaa atgaaaattt tagcagagca
     1081 ataaatgtct ttaataaaaa ttgatcaaaa agcttatgaa tacaatttaa gacatattgc
     1141 taaaaaaata gggagttttc aaagattaat ttgtgttttt aaagataatg catatggaca
     1201 tggagctaag cttttagctc cattagccaa aaatttagga gtttcttttg ttgctgttaa
     1261 gagtgaagaa gaagctcgag aaatcgaaga attttttgag aatatattaa tactatcaca
     1321 tcgtcctcat ggtaatgaaa attctcgatt tatttatgct ttaaatgaca tttctcaagt
     1381 aaaaaattac aagcaagata taaaaataca tctaaaaata gatacaggca tgcatcgcaa
     1441 tggaatttgt gtagaaaatt tagagcatgc tataaatctt attcaaggta gtgatttaaa
     1501 acttactgga atgtttacac attttgctag tgcagatgaa atggatggaa gtttttttgt
     1561 tcaaaaagaa aattttcaaa aagctaaaaa gatagtaaaa aaatattttt caaatttatt
     1621 atttcattcg tataattctg cagcattatt tagagggaaa attcctgaag atgaatattg
     1681 tagagttggg cttgttcaat ttggatatgg ggattcaaat ttaaaaagag ttttaagttt
     1741 gtatgctcat agattaagtc aaaggatttt acaaaaagga cagagcatag gatatggagg
     1801 catttttact gctgcaaagg atatggaagt agcaacttat gatttgggtt atgctgatgg
     1861 tctttttcgc tacaatggaa ggggggagtt agtgcttgga aatggaaaag caatgcttgg
     1921 aaagatgtca atggatagtt tttcttgtga aaattctggt gaggaaattt gcgtgtttaa
     1981 agatgctgat atttgggctg atttttttca tactattaac tatgaaattt tagtaaaatt
     2041 aaatcctaat attcaaagag ttctagtata aatatgttta atatagtttt agttcaccct
     2101 agaataccgc aaaatacagg tagtataggt agaatgtgct ttaatgctgg ttttaaactt
     2161 catattgtta aaccaattgt ttttgatatt tcacaaaagg ctgttagaag ggcaggactt
     2221 gattactggg ataaattaga gcctattatt tgggagaatc ttgaagaatt tttgaatgaa
     2281 aatatgattt ataaaaatcg cttttttttc gcaacaacta agagtcaaaa agcttatttt
     2341 gatgcagaat ttcaaaaaaa tgatttctta ttctttggaa gtgagagtta tggtttgcct
     2401 atggaattaa tgcaattaaa ttgggaaaat gctataacta tacctatgaa atcttatgga
     2461 agaagtttaa atttagccac aagcgttggt ataatctctt atgaagcttt aagacaaaat
     2521 tttagaaatt ttgcttctta aaagtttcaa atttacacaa tagcttaaaa caaataaaat
     2581 cataaagtcc tttttataaa aattatgtta aagtaaaatt tagattattt tttgaggagt
     2641 ttagatgaat ttagatatta tgctagattt tgccaataaa gcgtctgata ttatagctaa
     2701 taagattgtc ccaaatacag acattattat ggtagtttta cttattgttt gtgggcttta
     2761 ttatagtttt ttaactcgct ttgttcagtt tcgtatgttg agttctgtat ttaaaattct
     2821 tacagaaaaa aacgaaggac acgctaaaga acatatttca ccttttcaag cattaatgat
     2881 ctcaactgct tctagagttg gtataggaaa tattgctgga atttctttgg cattggctac
     2941 aggtggagct ggtgctttat tttggatgtg ggttatggca ttttttggtg gtgcctcagc
     3001 atttgctgaa agtaccttag ctcaagttta caaatcaaaa gatgatacag gcgggtttaa
     3061 aggtggtcca gcttattata taaaaaaagc cttaggctca catttttttg gagctttttt
     3121 tgcttttatt cttattatta cttatgctta tggatttaat ggacttcaaa gtcaaacaat
     3181 gacttcgtct tttaaagttt attatgatat gtttaatcca aatgctgctg tagattttgc
     3241 atcaagttct tggccaatga ttattggtat tgttttaact atttttggtg catggatgtt
     3301 tttttctcac catactaaaa taggtaaaat tagttcttta attgttcctt ttatggcttt
     3361 agcttatgtt ttacttgccg tgattgctgt tttaatgaat tttgataaaa ttccttctgt
     3421 gattcatatg attttacaaa gtgcttttga ttttaaagcg atttttggtg gttttgctgg
     3481 ttctgctttg gttataggga ttaaaagagg acttttttca aatgaagcgg gtatgggctc
     3541 ggcacctaat gcagctgcag cagctttgac aagtcatcca gctaaacaag gtgttataca
     3601 agccttttca gttttaattg atgttgttgt ttgtacaagt tctggatttt tagttctttt
     3661 ttctatggca tatttaggac ttggagaaaa taaaattgat ggtggaatgc ctttagttca
     3721 agaagctatg cgtgagtatt acggtagctt tggaatccat tttattacta tagctattgt
     3781 tctttttgca ataacttctt taataggaaa ttattattat gctcaagcta atgttaaata
     3841 tttaacaaat tccaaatttg taatgaattt gtttagaatt acagctgtgg ctatgatttt
     3901 tataggctcg caaatgaatt taaaacttgc ttggaatttg gctgatttga ctatggcttt
     3961 catggcaacg acaaatatta tatctttatt gcttttaggt ggtatagtaa ataaagtttt
     4021 aaaagatttt aatacgcaac aaaaatctgg tatagatcct aaatttaatg ctagcaaact
     4081 tggaattaaa aacgctgaat gttgggatta aaattcataa gccttagtgg cttatgaatt
     4141 aatgatttaa aaccttgttt aaaaattctc tcaatctttc attgctagga ttttcaaata
     4201 cttctttagg gcttgcatca acagcaattt ttcctttatc cataaaaaat atacgattgg
     4261 caacatttct agcaaagccc atttcatgag ttactacaag catagttaaa ccttcttttg
     4321 caacatcttt cataatgctt agaacctcgc ctatcatttc aggatctaga gctgaagtag
     4381 gttcatcaaa taaaataaca tcaggattca tcatcaagct tctagcaata gctatgcgtt
     4441 gtttttgtcc accagagagc ttatggggca ttatattttc tttgtctgct aaacccacct
     4501 tagcaagaag taattttgct ttttttatgg cttcttcttg acttaaaatt cctgttttaa
     4561 ttggtgttaa acataaattt tccataacat ttttattagc aaaaagatta aaatgctgaa
     4621 ataccatgct aactttttgc ctgatcttat taatatcaat ttctttatca agtatgtttt
     4681 gcttattgat taaaatttcc ccactatcag ctagttctaa gcgattgatg cagcgtaaaa
     4741 atgtactttt tccgcctcca cttggaccta tgatagctat tacatcgcct tttgagattg
     4801 tagtgttaat attttttaaa acttctaatt ctccatattt tttttgtaaa tttttaactt
     4861 caatcatttt tattcatcct aagttcaagt ttttttgcaa aataactaaa aatttttaca
     4921 cttacataat aaacaagtcc agtgaaaata ataggctttg gattgtaaag tacggcttgc
     4981 aagctttgac tttgcatggt aatatcaata acactaataa atcctacaac agaagtttcc
     5041 ttaaataaag aaataaattc attagctaat gcaggtagaa tgtttttagt agcctgagga
     5101 agaataattt ctttcattga agttttgtaa tcaagtccca ttgctcttgc agcttccatt
     5161 tgtcctttat ctacactatt aatgccactt cttacaattt ctgctatata agccgagcta
     5221 ttaagtccta gtgcaagaat ggctgcataa aggttgtcta taaaagtaaa aattacaaaa
     5281 gcaaaaatca tcaattgtaa aattaccggt gttcctcgta taatgtctat atattcatct
     5341 ataataaaat taagtgtttt aaatttagag aagcgtaaaa tagctaagct aaaaccaata
     5401 atcactccga taataacagc acaagcagtt aataaaagcg taataagata actttttaaa
     5461 taagcttttg cattttctgt atagccatag cttgcaactc cactaggatc ttgaattttt
     5521 aatatttcta tcgggaaaga aaaatagccc cataaaataa taataacaaa aaaaacaaaa
     5581 attcttatat ttttctgatt caatttgtaa accttttcag agaaattatt taaaaaaaga
     5641 ttttatagaa atatctttga attttctcta aagatttaaa aaaatgtgtt agaatttccc
     5701 aaaaataagg ttgtatttat ggaaatttta gatttcattc taatagttat ttttgtgttt
     5761 ttaatgattg ttttggttat aggtttcaat catcaaatga tgcaaaaaaa caaagaaaga
     5821 gaagaaagat ttaaaaaata taaaaaagga gaacaaaatg agtaaaaaag tattaattcc
     5881 attggctcaa ggttttgaag aagctgaatt tataggaatt gcggatgttt taaaacgagc
     5941 aaaagaatta aatccagatt tggaagttgt tatagcttcg ttaaacagtg agttattggt
     6001 aaaaggtgct aatagcatta gtataaaagc agattgttct atagaggatg ttgatataga
     6061 aaatttagat gctattgctt tggcgggtgg ctttgaaggt atgatgaatc ttaagaattc
     6121 aaatgttatt ttaaatatca ttaaacaact tcatagcaaa aataaaattg ttgccgcaat
     6181 ctgtgcttct cctatagttt taaatgaagc aggtgtttta gagggcgagt ttgcttgtta
     6241 tcctagttgt gaagttggac ttaatggaaa tcgtgttaac aaggctgtag ttgtaaataa
     6301 aaatgttata acttcagcag gtccagctac ggcaattctt tttggtttag aactagctaa
     6361 aaagttatgc ggtgatgaaa tttatcaaaa attatacgag ggaatgttgc tacctttgac
     6421 aaaatagttt aaatggtagt ttttctacca tttaaattaa aataaagctt gaggattttc
     6481 ttttttagtt ttttccttag gcagttcaaa acctccaagc atatgaaaat gcaaatgaaa
     6541 aacttcttgt ccactatttt ttccacagtt tgttaccaag cgatatccac ttttatctac
     6601 acctaaaaga acagctaatt cttgtatgaa acttgtcatt ttggccataa gttcaggatc
     6661 aaattcttga aagtctttaa aatatttttt agggattata agtatatgta tgggtgcttt
     6721 gggtgcaata tcatgaaatg ctagaaaatc gtcactttca agcactttat tgcatggaag
     6781 tttaccttca actatgagtt caaaaattgt tttttcttgc attatttatc cttttttatt
     6841 gttggtttga tacaattata tctttaaagt ttggttttta tgctgaattt aaaatagttt
     6901 ttaatagaat tagaacttga aatattttat ttaaggtaag aaaattgcaa aattttatag
     6961 aacagattca aaaatgtgag aatttaaatg atttggaagc cattaggatt tccgttcttg
     7021 gaaaaaaagg tattttaaca gaaggcttta caaagcttaa agagttagaa gatgaggcga
     7081 aaaaagaatt tgctgctaaa ttaaatgcac aaaaagaaat atttaatgag gcttatttag
     7141 ccaaatttaa agatttggaa aatcttgctt tagaagaaag aatgaaacaa gatgctttaa
     7201 attttaacta ttttgatgaa agtattacaa caggtgcctt gcatcctgtt atgagcacca
     7261 tggataaaat catagaatat tttatagctt tgaattttag catagaaaaa gggcctttaa
     7321 tagaagatga ctttcataat tttgaagcgt taaatttacc taaatctcac cccgcaagag
     7381 atatgcaaga taccttttat tttgatgata aaaggctttt aagaacacaa acttcgccag
     7441 tgcaaatacg gacaatgctt gcacaaaaac ctcctattag gatgatagcc cctggtgctg
     7501 tatttagaag agattttgat attacgcata ctcctatgtt tcatcaagtt gaaggccttg
     7561 tggtggaaga agggcaaaag gttagctttg caaatttaaa aagtgtattg gaagattttt
     7621 tgcgttatat gtttggagat gtgaaagttc gttttcgtcc aagttttttc ccatttacag
     7681 aaccttctgc tgaagttgat atttcttgtg tattttgcaa aggaaagggt tgtagagttt
     7741 gcaaacatac aggttggctt gaagttttag gatgtggaat agttgatcct aatgtttata
     7801 attttgttgg ttatgaaaat gtaagtggtt atgcttttgg attgggagta gaacgttttg
     7861 caatgctttt gcatcaaatt ccagatttaa gatctttatt tgaaggtgat ttgagattat
     7921 tggagcagtt tagatgataa ttactaaaag ttggttgaat gattggttag aacttgaaga
     7981 aataagttca gataaaatag ctaaaacttt aaactctata ggtatagaag ttgatagggt
     8041 tggcgcttta aaggctccag ataaagttgt tgtaggctat gttaaggaaa aaattaaaca
     8101 tgaaaattca gataaattaa gcatttgtca agttgatatc ggaagtgaaa tcttgcaaat
     8161 tgtctgcggt gctgcgaatg ttgatgcagg acaatttgta actgttgcaa ctaaaggtgc
     8221 tatcatgcca aacggtatgg aaataaaaga agcaaaattg cgaggagtgg attcttgtgg
     8281 tatgctttgt tctagtttag aactgggttt tgaaaaaatc aatgaaggaa ttatgctttt
     8341 agatgagagt atagggaaat tagaacttgg gagaccttta aatacttatg aaatttttaa
     8401 tgatgagcta atagaagtgg aacttactcc taataggggt gattgtttaa gtatttatgg
     8461 tatagctcgt gatttagccg cagctttaaa tttaaattta aaagaaccaa aaccatttaa
     8521 agaaagtgaa aatgttttag gtatcggtag aattttgcgc ttagcagctg agaaagaact
     8581 taatggactt tataattatc gagccatagg gctaaaagaa gaaattcaaa caaatttatt
     8641 gcttagttta agacttgctc aaattgaagg tttgggaaaa aattccatag aaaatttatt
     8701 aaattatgca acgcattcaa ctggtgttct ttttaatgct tatgatttaa gtagtttttc
     8761 tgaaaaagat gaagaattta ccattaattt aagcaagcaa gtgcatggag aaacaaaagt
     8821 atcttacaaa gataaacttt taagctttag cggaattttc caaaataatg aaagtagatg
     8881 taaagatgat tctaaaataa ttattattga ggctaattat accgatccat tggtaattgc
     8941 agatgctaaa atatatcata aagatcaaga tgaaaaaatg ctttatagaa gttttagggg
     9001 aagtgaacct aaattaaatt taggaatgga ttttttgctt ggtatttttg agcagattcc
     9061 aaatcttgtt atttatagtt cttctcaaca aattttaact gacaaagaat taccaatcat
     9121 accaataagt attgaaggta ttagcgatat aataggacaa aatgttgata aagatgaagt
     9181 attaaaaata ttaaagaaat taggttttga gctcatactt tcaggtgaag ggcttataaa
     9241 tgttaaagca cctttacatc gtcctgatat taaaaattta tcagatattt gcgaggaagt
     9301 tgtaagaatt ataggtattg ataatattgc ttccaagggt ttagaattta tagaaaaaaa
     9361 tcgtttaaat tctgcatata aaaattatat tgagttttta aatttaagaa aaagagcagt
     9421 agctagtggt tattttgaaa gcttacatta tgttttggat aatggagaag aacttaaaag
     9481 attaggtttt gactctgtta aattaaaact aatcaatcca attacagcag aacttaatac
     9541 tttaagaaca acccttttaa atcatttgtt aaatgcagca agtttaaatg caaaaaattc
     9601 taaaaaaatt attaaacttt ttgaattagg ggctgttttc aatgttaata atcaagaatt
     9661 aaatcgtatt gcatttatcc attctggctt aaaagaagaa gctaaaattt ccaacaaggc
     9721 caaacctgaa tcggtgcaat tttatgattt tcttttagat attaaaaata ttataggtga
     9781 ttttaaacta aaatcatcaa aatataatat tttaagccct tatgaacaag cagatattta
     9841 tctatcggat attaaagtag gttttatagg ccgtttgcat ttaaaaatag aaaatgagag
     9901 agatttacca aaaacatata tttgcgaact tgatttagat ttaatcaggc aagattttaa
     9961 aatagctaag ccttactcca aattcccagc tatcactaga gatcttagcg tgttaatacc
    10021 taaaggtttt gaatacaatc agattaaaaa ttgtatcgaa gaattgaatt tagaaatact
    10081 tgaaaatttt cgtttagttg atatttatag tgatgaaaac cttaaagaat tttatagcat
    10141 tactataagt ttttctttta gggatataaa taaaactcta gaggataatc aagtcaatga
    10201 atgtatggat aaaattttaa atactcttaa aaatttgggt cttgatttaa gatgaaaatt
    10261 tacaaattgc aaacccctgt aaatgccata cttgaaaata tagcagcaga taaaagtata
    10321 tctcatcgtt ttgctatatt ttcgctttta acacaagaag aaaataaggc tcaaaattat
    10381 ctcttagctc aagatacttt aaacactctt gaaattataa aaaatcttgg agctaaaatt
    10441 gaacaaaaag attcttgcgt caaaattata ccccctaaag aaattttatc tccaaattgt
    10501 attttagact gtggaaattc aggaactgct atgcgtttga tgataggatt tttagcagga
    10561 atttctggtt tttttgtttt aagtggagat aagtatttaa acaatcgtcc tatgagaagg
    10621 ataagcaaac cacttactca aataggcgct agaatttatg gaagaaatga ggcaaattta
    10681 gctccacttt gcatagaagg tcaaaattta aaagctttta attttaaaag cgaaatttct
    10741 tcggctcaag ttaaaacagc tatgatttta tctgctttta gggctgataa tgtatgcact
    10801 tttagtgaaa tttctcttag tcgaaatcat agtgaaaaca tgctaaaggc tatgaaagct
    10861 ccaataaggg ttagtaatga tggcttaagt cttgaaataa atcctttaaa aaaaccttta
    10921 aaagctcaaa atataatcat tcctaatgat ccttcttcgg ctttttattt tgttttagca
    10981 gctattattt tacctaaatc tcaaattatt ttaaaaaata ttttgcttaa tcctactcgt
    11041 atagaggcgt ataaaatttt gcaaaaaatg ggtgccaaac ttgaaatgac aataactcaa
    11101 aatgattttg aaactattgg tgagatcagg gtggagtcta gcaagcttaa tggcatagaa
    11161 gttaaagata atatcgcttg gttaatagat gaagcgcctg ctttggctat agcttttgct
    11221 ttggctaagg gtaaatctag tttaataaat gctaaagaat tacgcgttaa agaaagcgat
    11281 aggattgctg tgatggttga aaatctaaag ctttgtggtg ttgaagctag agaacttgat
    11341 gatggttttg aaatagaagg tggatgcgaa ctaaaatctt caaaaattaa aagctatgga
    11401 gatcaccgta ttgctatgag ttttgctatt ttaggtttgc tttgtggaat cgagattgat
    11461 gatagtgatt gtataaaaac ttcttttcca aattttatag agattttatc aaatttagga
    11521 gctaggattg attattgaat tagcaaaaaa ctatggtttt tgttttggtg ttaaaagagc
    11581 tattaaaaaa gcagaacaaa taaaagatgc tgcaactata ggccctctta ttcacaataa
    11641 cgaagaaatt tctcgtttgc aaaaaaattt taatgtcaaa actttggaaa atatacaagc
    11701 tttaagtaat gaaaaaaagg ctattataag aactcatggt attacaaagc aagatttaga
    11761 agaattgaga aaaaaagata tagaaatttt tgatgccact tgtccttttg ttacaaaacc
    11821 acaacaaatt tgcgagcaaa tgagtaagga gggttatgaa gttgttattt ttggagatga
    11881 aaatcatccc gaagttaaag gagtcaaaag ttatgtaagt acaaaagctt atgtagtttt
    11941 ggataaaaaa gaacttcaaa atataaaact tcctaataaa atagctgtag taagccaaac
    12001 aactaagaag cctgagcatt ttatggagat agtaaatttt ttaatactta aaaccaaaga
    12061 agtaagagtt tttaacacta tatgtgatgc aacctttaaa aatcaagatg ccattaaaga
    12121 actctcgctt aaaagtgatg ttatggttgt tgtagggggt aaaaactcag ccaatacaaa
    12181 acaacttttt ttgattgcaa aaaccaattg tgaagatagc tatctaattg aaaccgaaga
    12241 agagttaaaa aaagaatggt ttttagataa aaaacattgt ggcattagtg caggtgctag
    12301 tactcctgat tggattatac aaaaagttat cgccaaaata gaaaatttta gaattaatta
    12361 aaaaatgttt ttaaatagaa taaaaaagtc aaaaatttaa aaaaaattaa caaaaataaa
    12421 aaaacttaac actaattaaa gaaaaataag gtaaaatcaa tcaatttcta aaaattattt
    12481 taaaggacca taatgagcga ggtgaacaaa aaagttcaag acggcgtaga tgattatctt
    12541 gaggaagaag attttggaca gcttttagaa gcttttgata aatcaagaga agaggctaca
    12601 atagagggtg tgattgtaga gatcaaaaat gatgaagttt atgtagatat aggtaaaaaa
    12661 tctgaaggta ttttagctct tagcgaaata caaggtgaca attctaagct attgtttaat
    12721 gtaggtgata gtattaaagt tgctgttatg ggttctcgtg gtggcagatc tttactttct
    12781 cataaaaaag ctttgagaaa agaaaaagtt attgaattta ttaaaaacta tcaagaaaat
    12841 caagatgata tttttaccgt aaaagtagtt ggaaaaaata aaggcggatt gatagttgtt
    12901 gatgaaaatg atgttgaatt tttcttacca aaatctcaat atggctttaa agaaacaaat
    12961 aatattatag gcaaaacgtt taaagttaaa attattaaaa tcgacaaaga tgagcaaagt
    13021 atcattgttt ctcgtaaaaa aactttagat gatgagagaa gaaaacgaaa agaattgatc
    13081 aataatgtag cacaacaaga agatttaatt gaaggtattg taaaaaaaat taccacttat
    13141 ggtatgtttg tagatgtagg aggtgttgat ggccttgttc attacagcga aatttcttac
    13201 aaaggacctg taaaccctgg aacactttat aaagagggcg ataaagttcc agttaaagta
    13261 ataaagtatg ataaagaacg caaacattta tccttatcta taaaagcggc tttacctgat
    13321 ccatggagcg agataaaaga tactcttgat ataggtgata ccattaaagt aatagtatca
    13381 aatatagagc cttatggtgc ttttgtggat ttaggaaatg atatagaagg atttttacat
    13441 atcagtgaaa tttcttggga taaaaatatt aaaaatccaa aagattatat caataaaggt
    13501 caagaaattg atgttgaagt aattgaaatc aatccaaatg aaagacgctt aagggtttct
    13561 ttaagaaatt tactttctag accttttgat gaatttatga aatcttacaa aattgcagat
    13621 gtggttgaag gagaaattac ctcagtaact tcttttggtg catttgttaa acttggtggt
    13681 attgaaggtt tattgcataa tgaagatgct tcttgggata gaaacgataa atgcaaagac
    13741 aaattctctc aaggggataa aatcaaggta aaaattatca aaatagatga agaaaaccaa
    13801 aaaatatcat taagtacaaa agaattaagc agttctccag tgcaagaata tgctaaaatt
    13861 cataaagtcg gcgatattgt aaaaggtgct atccgtgata ttaaagattt tggtgttttt
    13921 gtagagctaa gtaaaaatgt tgatgcttta attcataaag aagatataag cacttctatg
    13981 cttgaaaatt taaaaattgg cgacgatatt gaagctgcta tagtttttat tgatgaaaag
    14041 aaaaatagaa ttcgcctaag tgttaaaaat cttgttagaa taaaagaaag agaagttctt
    14101 aatgaaatca ataatgatga taaagtaact ttaggtgata tcattaaaga tcagctagct
    14161 taatgaaaaa atacattaca ataagcattt tgagtatttt attactcatt ttgcttgctg
    14221 ttgtttttac attgctttgg caatttaaag ctaatgtaaa tttcattcca caatttgcta
    14281 aagatacaaa tacgcagcca agcattcaaa cccaaaatca agatctttca tggcaagaag
    14341 aattagcaaa atggcctaca agagatttta ccccagcagc agaaaaattt accttatatt
    14401 ttgatgcgga tactagcgag cttaaggaga aaaataaata ttatcaactt atagttggaa
    14461 aatatgatat ttattctatg ttttgcttaa gacagacttt aaattctttt aatgtgaagt
    14521 attttcttct taaatctggc catagtccag aaatcttttt ggatacaggc aatgaaaaac
    14581 ttatagatga tattatcaaa gaattaaaaa aatataaaat aaatacagaa gtaaaggaaa
    14641 tttggttatg aaaaaaaaga ttatagtgtg tgatgctatt ttggataaag gtgtcgatat
    14701 tctaagaaaa gctgaagata ttgagcttat agaagctgca aaatttccaa aagatgaact
    14761 tatgcaaatg ctaagcgata ttgaagttgc aattactaga agttctacgg atgtagatgt
    14821 aaatttttta aatcatgcca aaaaattaaa agcgcttgtg cgtgccgggg tgggcgtaga
    14881 taatgttgat attccagagt gttctaaacg aggagtgatt gtgatgaatg tcccaactgc
    14941 aaatactatt gccgcagttg aactaacaat ggcacatctt ttaacatcag ctagaagctt
    15001 tgtcaatgct cataattttt taaaaattga aagaaaatgg gaaagagaaa aatggtatgg
    15061 cattgaattg atgaataaaa cgctaggggt tataggtttt ggaaatatag gttcaagagt
    15121 agctatccgt gctaaagcat ttggtatgaa aattttagcc tatgatccgt atatttctgc
    15181 ttctaagatt acagatttag atatggaaca agcaaaaaat ttggatgaaa ttttagaaaa
    15241 aagtgatttt attaccattc acacaccaaa aaccaaagaa accaatggta tgataggaaa
    15301 gcaagaaatt gcaaaaatga aagatggaat aagattaata aattgtgctc gtggaggatt
    15361 gtacacagaa gaggctttat atgaaggttt aaaaagtggt aaaatagctt ggcttggtat
    15421 agatgtgttc gataaagaac ccgcgactaa tcatcctctt ttagactttg aaaatatttc
    15481 agttacttct cacctaggag caaatacttt agaaagtcaa gacaatatcg caagagaagc
    15541 ttgtgagcaa gcattaagcg cagcacgagg cgtggcttat cctaatgcct taaatttacc
    15601 aattaaaact gaagatttac caccttttgt agctccttat atagaacttg tttctaaaat
    15661 ggctttttta gctgttcaaa ttgataaaaa tcctataaaa agtattaaat tagaggctga
    15721 aggaattatt ggtgagtatg caaattctat gctaactttt gcagctgttg gtgctttggg
    15781 tggaatttta ggagagaaaa ttaattatgt taatgcagaa tttgttgcca aagaaaaagg
    15841 agttgaatta tcttgcgaaa ctcttccaaa tagtggttat aataataaac ttagcgttaa
    15901 aattatcacc gaaaattcaa atatcagtgt ttcaggaaca gtgtttaatg aaaatgaaca
    15961 acgcatagtt ggattaaatg gctttaaaac tgattttaag ccaaagggaa aaatgattat
    16021 ttttaaaaac aaagacatac caggagttat agctaaaatc agttccgttt tggcagctaa
    16081 aaatatcaat atagctgatt ttaggcttgg tagagatggt tttgggtatg ctttggctgt
    16141 tgttttgatt gatgaaaaag ttcaaaaaga agtattagat gaactaaaac aattagaggc
    16201 gtgtgtattt gtccaatatg ttgaaattta aaattttaat tatagaagat gatatagatt
    16261 taaacgaact gcttgtttta aagttaaaat ctagtggtta tgaagttata tctttagcgg
    16321 atttttttgg agttgaagat ttgctcgata atgagcaaat tgatctttta atagtcgata
    16381 gaaatttgcc cagtggagat tctttagaaa aaattcaaga tttaagagag caaggatata
    16441 aagaagcagt tatttttctt acagccaagg ctttacatca agatttactc gaaggctttg
    16501 aaagtggttg tgatgattat gtttgtaaac cttttgattt caatgagctt ttgcttcgca
    16561 ttaaagcaat tttaaaacgc cataaaaaag aagaagaaaa actatctttt ggtgatttta
    16621 ttttagattt ggttagttat gaattctttt acaaaaatca aaaattagaa atctcaaatc
    16681 ttgactatga gcttttaaaa tgtttttttg aaaatccaaa taccttgctt actagacaat
    16741 ttttaagcga aagtgtttgg aaagatgata ctacaagtga taaaacaatc aatatagctc
    16801 taacaagact tagaaataaa tttccaaaac taaaagatca tattataagt gttaggggta
    16861 ttggctataa attatgctaa aaactaaaaa tatttttata gttttttttg ttgtattggc
    16921 tttgattttt gggtttattt tttatacttt tactaattct tatcttaatt tcttgcttat
    16981 aaaacaatat gaacaaaaaa tcaaaagcct tgatgatgtt ttaaaatttt ctctcttaga
    17041 gcatttaaat gatgctaata tcaaggattt tgctaaagat actagggctg attttattat
    17101 cctaaacaat gatatgaaaa taagttctgt aaaaaatcct gatttttttt ctaatcttaa
    17161 agaaggagaa attttaaatt tcaattcaaa aaaaattct
//
LOCUS       DAPIWJ010000028        17131 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.028, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000028 DAPIWJ010000000
VERSION     DAPIWJ010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17131)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17131)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17131
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.028"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            50..1072
                     /locus_tag="RJ259_000731"
     CDS             50..1072
                     /locus_tag="RJ259_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366460.1"
                     /translation="MNLKIFSIIVGILIAVIVILGGTYYYLFEYSKPKNYTLNTNTYT
                     EQKSYTNNYDNPYSPSIQTNNSSSNVNTNNNTIQKQETNPLLDENQSLNNDTFNISIS
                     ENNQSLNNDTNTSNNINTNENKQILDTDKEKLKQENKQAKIEALKKEISKQQKILERE
                     RAIKKELQSNKSNKNKYLNTAREYLSIGKNSRLEPELSTENMKVYILDGKFLSQYRIN
                     LLKDMLSIIQDNAKDYYLSIFVKMLPKGEMKLTIYNKEIIFSDMKKAYKYISLDRLSP
                     YLNNPKELNEHVAREEILERLKLQIKKDGKGSDFSKHIKSLKTGLNTAQYFFPFCEII
                     EISSIK"
     gene            1095..3707
                     /locus_tag="RJ259_000732"
     CDS             1095..3707
                     /locus_tag="RJ259_000732"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HDV7366461.1"
                     /translation="MYDKNLEKEYYQICEERGYFEIDGNKTIQEKDKNFCIMMPPPNV
                     TGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIATQNVVEKQLLAQGIKKE
                     ELGREEFIEKVWEWKEQSGGKILDQMRTLGITPAWSRLRFTMDEGLVNAVKKAFVELY
                     DKRLIVRGNYMINWCTHDGALSDIEVEYKENKGKLYHIKYFLKDSDEFLVVATTRPET
                     FFGDTAVMVHPDDERYAKFVDKEVILPISKKAIKIIADKHVEKEFGTGVVKVTPAHDM
                     NDYEVGLRHNLDFISVFDEKGILNEHCLEFQGLERLEAREKIVAKLESLGFIEKIEEY
                     NNQIGYCYRCNNIVEPYISKQWFVKKEIAQESIEKVALGESKFYPNHWINSFNAWMKD
                     LRDWCISRQLWWGHQIPVYYCECSHEWASQHTPKTCPKCQSQNFKQDEDVLDTWFSSG
                     LWAMSTLGWGNENWGKDKIWSEKDLKDFYPNSLLITGFDILFFWVARMMFQSTNVLHQ
                     LPFKDIYLHALVKDEQGRKMSKSLGNVIDPNESIKEYSADILRFTLALLAIQGRDIKL
                     SNDKLLQVRNFTNKIYNAKNYLLLNESKFEDLENITLHSELAKYIYAKFQTCVKDVRE
                     NLDNYRFNDAANTLYKFFWDDFCDWGIELSKAEKSSVKELGSIFKEALKLLNPFMPFI
                     SEYLYHKLSDTELKTSPSIMISKYPKFKEQDKNIEKIFSLLIESIVSIRRAKSLIDLG
                     NSKIEKAYIKFNDKKIKDEIKAYMNFIIMLAKCEQIEFSEEKLPKAICDVSENLEIFI
                     TLENVDLSGILTRLENQKNKLEKESFKLNSMLSNEKFIANAPKEVVEQNKEALENLKI
                     QLEKISVELQNLRG"
     gene            3712..4722
                     /locus_tag="RJ259_000733"
     CDS             3712..4722
                     /locus_tag="RJ259_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HDV7366462.1"
                     /translation="MIKIKNLKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLL
                     RCINGLENYQEGSLKVFDQEIKDLSQKKSKELRMLRKDIGMIFQNFALMERKNVFENV
                     AMPLRTHYTQCKFHAKLFNKEYMSEKEIAQKVNSLLEIVGLDHKNKSYPRELSGGQKQ
                     RVAIARALALNPKILLSDEATSALDPNTTKNILELISKINAEFGITVVLVTHEMDVVK
                     DIAQKALLLEHGQIIGSGAIDELFLRPNAKMKEFLGESDFLPEHGLNIKLYFPKEVAQ
                     NSVITHMARTLNIDFNIVWGKIEKLNGKALGNLVININEKDKDKVLDYIEKSGVLWEV
                     AS"
     gene            4719..5630
                     /locus_tag="RJ259_000734"
     CDS             4719..5630
                     /locus_tag="RJ259_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7366463.1"
                     /translation="MNEENISIVSAFFSRISQFFNEFSWQDIKEVSLSSITSFNENYE
                     NILKPALNETIYMSLMAVLFGFLLAIIPGILLAIWDKNGIKENKIAYSILDFITNILR
                     AFPFLILIVVLLPLSKIIVGTSIGTNAAIVPLAIGIAPYLAKMLESAFKEIDKGIIEA
                     AKSYGASNIQIIFKVIFSEALPAIISGITLTLIFTIGFSALAGTVGGGGLGDVAIRYG
                     YERFNKEVMIQTVVILLILVQLVQILGNLFYTWAKNSKTTYIIATLLILLGVSIVINI
                     NNDENFFWQVIVFILFLGSLLYKGFKK"
     gene            5820..6593
                     /locus_tag="RJ259_000735"
     CDS             5820..6593
                     /locus_tag="RJ259_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDV7366464.1"
                     /translation="MKIKSLFIASILTLSLNANALETITVAATPVPHAEILEQVKPDL
                     EKQGYKLEIKEFTDYVLPNLAVDNGEADANFFQHTPYLEEFNKNKGTKLIKVAAIHIE
                     PMAVYSKKYKSLDDIKEGVKIAIPNDPTNESRALDIIAKKGLVKFKDKALKTPLDIID
                     NPKKIKFVELKPAQLPRALNDVDFAVINSNYALSANLNPAKDSVFIEDKESPYANILV
                     VRVGHENDPKIKALIQALQSDKIKQFIIEKYNGSVLPAF"
     gene            6642..7412
                     /locus_tag="RJ259_000736"
     CDS             6642..7412
                     /locus_tag="RJ259_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDV7366465.1"
                     /translation="MNLFKIIILACILNLSSLFAQNITIGATPNPFGSLLELMKDDFK
                     NKGYELKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATTPVLIAP
                     VGVYSKKIKNLENLKEGARVAIPNDATNESRALELLEKAKLIELNKNTLKTPLDINKN
                     PKKLKFIELKAAQLPRALDDVDIAIINSNFALGAGLNPSKDTIFREDKNSPYVNYVVV
                     RSEGKNSEKTKVIDEILRSDKFKAIINEHYKDILIPAF"
     gene            7422..8198
                     /locus_tag="RJ259_000737"
     CDS             7422..8198
                     /locus_tag="RJ259_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDV7366466.1"
                     /translation="MNIKKIFLSVLFTISLSFGADKTIIIGATPTPYAEILNFSKPLF
                     QEKGWKLIVKEFNDYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTKLSSLGAIVLV
                     PMAIYSNSIKDIKDIPNGAKIAIPNDATNESRALDLLAKANLIEFKSQSTLKTPIDIS
                     KNPKKLKFIELKAAQLPRALNDTDLAIITTNYALGAGLNPLKDGIFMEDKDSLYAIVL
                     ATRKGEETSQKSLVIKEILTSDKIKNFIIEKYKGSVIPTF"
     gene            8282..8944
                     /gene="flgA"
                     /locus_tag="RJ259_000738"
     CDS             8282..8944
                     /gene="flgA"
                     /locus_tag="RJ259_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HDV7366467.1"
                     /translation="MKIIFLTFFIVINYIQAASLEEIKTALAKEFRNNFPKIIISQID
                     LKITSLPKDFDQYEFLRIANGRFNQAQGFLRAEFKTPQNIQKNVFFRYFIQANLEVLK
                     SERAIKRGDKLGAFDYKSVLIDFDKVPLNALTLDDVDNLVAKSNINKNAILRANMFKT
                     TALIRRNDPIIGVLSEANVDVLIELVALQSANMGERIRAKNKEGKVMQGIVVGKNRMI
                     IQ"
     gene            8941..9504
                     /locus_tag="RJ259_000739"
     CDS             8941..9504
                     /locus_tag="RJ259_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HDV7366468.1"
                     /translation="MKVLLGISGSSSVNLGLKLLKNLENQCELYCILTQGAKLNFKTE
                     NQANLEEICQENFKYTHFLDDKNLSLSVASGSFGIEKTIIAPCSISSLAKIHAGFADT
                     LLMRAAAVALKERKKLILGVREMPFSTLNLEHMLKLSQMGVIIAPPIIASYSKANNLE
                     QMENFIAGKWLDLLEIKHNLYEKWQNF"
     gene            9544..10020
                     /gene="coaD"
                     /locus_tag="RJ259_000740"
     CDS             9544..10020
                     /gene="coaD"
                     /locus_tag="RJ259_000740"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HDV7366469.1"
                     /translation="MTCLYPGTFDPITNGHLDVIKRALKIFDEVIVAIAKSEHKKPCY
                     DLEKRKELALLATQNLKNVKIIAFDNLLVDLAKELKVNTIIRGLRAVSDFEYELQIGY
                     ANHALWEDMETIYLMPSLKHAFISSSIVRSIVAHGGDVSSLVPKEILPFLKDQSCM"
     gene            10011..10589
                     /locus_tag="RJ259_000741"
     CDS             10011..10589
                     /locus_tag="RJ259_000741"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HDV7366470.1"
                     /translation="MYVVFEGIDCVGKSTQISLLKEIYKDAIFTLEPGGTELGKHLRE
                     ILLNKTHPINKRAELLLFLADRAQHFEEILKTNQNKLIISDRSFISGMAYAKDFENDL
                     LFALNSFALENFFPQKIIFLKGDASLIQERLSQKELDSIEKRGIEYFLSVQDKLEKVL
                     HFLKEKISVEILTLDAKESKEKLHQQIKEFLQ"
     gene            10586..11812
                     /locus_tag="RJ259_000742"
     CDS             10586..11812
                     /locus_tag="RJ259_000742"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HDV7366471.1"
                     /translation="MINALKGMKDLLDKDAYYYEKVIKICEEVAKNYGFTFINTPHLE
                     LCTLFKRSVGESSDIVGKEMYEFIDKGENHVCMRPEGTAGVVRAYIEKKLDKNTSVKR
                     WFYYGSMFRYERPQKGRLREFHQFGVESLGIPNVYEDASIILMLVEIFSRLGIDFKLQ
                     LNSLGCSQCLPKYRDRLVEFLDSKEGFCEDCLRRKNLNPIRVLDCKNEHCQNLLENAP
                     LLINNLCTSCQKDFETLQQILKDNGVKFELDSKLVRGLDYYSKTAFEFISDEIGAKAA
                     IAGGGRYDRLIEYLGGKSGYGIGFAMGIERIITILEQKEEKIQREGIYLCAMDEIYIQ
                     KLLYIATNLRKEYKVLLSYEARKLAKHLENADKNNTEIFLCMGENEAQNESLFYKNLA
                     KKEEKMIKISDLKKVL"
     gene            11809..13644
                     /gene="speA"
                     /locus_tag="RJ259_000743"
     CDS             11809..13644
                     /gene="speA"
                     /locus_tag="RJ259_000743"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HDV7366472.1"
                     /translation="MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYK
                     GPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK
                     DYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGL
                     NELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLL
                     KENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLA
                     VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIA
                     PVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLF
                     DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSM
                     PDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKEN
                     YFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYD
                     IHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV"
     gene            13645..14283
                     /gene="cysE"
                     /locus_tag="RJ259_000744"
     CDS             13645..14283
                     /gene="cysE"
                     /locus_tag="RJ259_000744"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HDV7366473.1"
                     /translation="MNFWGIIKEDFSQPKAQDPAFNSCIELFFNYPGVWAVVNYRFAH
                     FFYIRNFKRIARMISGISQFLTGVDLHPGAELGRRIFIDHANGVVIGQTAIIEDDVLI
                     YQGVTLGGTSLEKGTKRHPTIKKGVIIGSGAKVLGNITIGENAKIGSNAVVVKDIGAN
                     LTAVGIPAYIIEERKNKNIRAIDANCDDKLEKLEKKILELENLILKQPESQK"
     gene            14455..15624
                     /locus_tag="RJ259_000745"
     CDS             14455..15624
                     /locus_tag="RJ259_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HDV7366474.1"
                     /translation="MLTKRSQVLEESITLAITALANELKAKGEDIISFSAGEPDFDTP
                     QTIKNAAISAIEKGCGKYTAVAGIPEVLKAIQTKFKKDNNLDYETNEIITNVGAKHSL
                     FECIECLVEKDDEVIIPSPYWVSYPEMVKFAGGKPVFIEGLEENGFKITAEQLKKAIT
                     AKTKVLMLNSPSNPVGSIYSKEELTQIAKVLEGTQITVLSDEMYEKLRYDGFDFVAFA
                     SVSKDALKRTVTINGLSKCGAMPGWRFGYMASKNKALISAVKRLQGQSTSNICSITQH
                     AAIPALNGECDKDIEKMRQAFEKRRNLALDILKQIPNISVYKPEGAFYLFVNIQKIEK
                     DSMKFCQKLLEQEKVAVVPGVGFGMDGYFRLSYATSDELIKKGLERIANFIKNYK"
     gene            complement(15674..16015)
                     /locus_tag="RJ259_000746"
     CDS             complement(15674..16015)
                     /locus_tag="RJ259_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HDV7366475.1"
                     /translation="MKIIQWNGAEFSPKEVKINVLIDNEKGKEIQILLAKDSVMKEHK
                     APFAIHVQVLSGKIWFEVEKEKFELNALDMISLEANVAHSLGGLENSIIRLSLNKSDS
                     VQRVNAVLKKP"
     gene            complement(16085..17107)
                     /locus_tag="RJ259_000747"
     CDS             complement(16085..17107)
                     /locus_tag="RJ259_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDV7366476.1"
                     /translation="MNLSFKIFDISNTQRSKAKKVQGKKYEIFLNENEHSLITPKVSF
                     KEILRYYYLYPKNAIPSFKLPFFKPDLSGFSTPHITWLGHSSLFISFKEYKILIDPIF
                     NTHASPISFINKAFKNAPVYNINDFNEIFAVIITHSHFDHLDAKSVKALKDKAKFFIT
                     PLKVGNYLKSYGVSEKKIIELDWWSGIEFGDLKIMATPAQHSSSRGDGKNKTLWASFV
                     MEFLSVDKRVFFSADGGYFTHFKKIGEYFGSFDLACLESGQFNIAWPYSHSFPEQILK
                     EAKDLNAKAVMPIHWGRFLAGTHAWNEVVKFLYENLDLPLITPKMGEAYEVGAKFKQD
                     FWWKEE"
BASE COUNT         6514 a         2492 c         2783 g         5342 t
ORIGIN      
        1 atagtacaat gctaaaatta tttaactttc tatttttaag ggatagcaaa tgaatttgaa
       61 aattttttct attattgttg gcatattaat tgctgttatt gtaatattag gtggaaccta
      121 ttattatctt tttgaatatt caaaaccaaa gaattacacc ttaaatacca acacttacac
      181 cgaacaaaaa tcgtatacca ataactacga taatccctat tcaccctcga tccaaaccaa
      241 caatagttca tcaaatgtaa atactaacaa caataccatc caaaagcaag aaacaaaccc
      301 attattagat gaaaatcaaa gcttaaataa cgatacattt aatatatcaa taagcgaaaa
      361 caatcaaagc ttaaataatg acaccaatac aagtaataat attaatacaa atgaaaataa
      421 gcaaatttta gatacggata aagaaaaatt aaaacaagaa aataaacaag ccaaaataga
      481 agctcttaaa aaagaaatca gcaaacagca aaagatctta gaaagagaaa gagctataaa
      541 aaaagaactt caatcaaaca aatcaaacaa aaataaatat ctaaataccg ctagagagta
      601 tctaagcata ggaaaaaaca gtcgtttaga acctgagctt agcacagaaa atatgaaagt
      661 ttatatttta gatggaaaat ttttaagcca atacagaatc aatctgttaa aagatatgct
      721 aagcattata caagataatg caaaagatta ttatctaagt atttttgtta aaatgctacc
      781 aaaaggggaa atgaaattaa ctatctataa caaagaaatt atcttttcag atatgaaaaa
      841 agcttataaa tatattagtt tagatagatt aagcccatat ttaaacaatc caaaagaatt
      901 aaatgaacat gtagcacgtg aagaaatttt agaaagactt aaacttcaaa ttaaaaaaga
      961 tggcaaagga agtgattttt ctaaacatat caaaagtttg aaaactggac ttaatacagc
     1021 acaatatttc ttcccgtttt gtgaaattat agaaattagc tctattaaat aagctaaaac
     1081 aataaaggca aataatgtat gataaaaatt tagaaaaaga gtattatcaa atttgcgaag
     1141 aacgcggata ttttgaaatc gatggcaata aaaccataca agaaaaagat aaaaatttct
     1201 gcattatgat gcctcctcct aatgtcactg gagttttaca cataggacat gctttaactt
     1261 ttactctaca agatattatg acgcgttata aaagaatgga tggctataag gttctttatc
     1321 aaccagggct tgatcacgca ggtattgcca ctcaaaatgt tgtagaaaaa caactccttg
     1381 ctcaaggcat taaaaaagaa gaactaggta gagaggaatt tatagaaaaa gtctgggagt
     1441 ggaaagagca aagcggtgga aaaattttag accaaatgag aacactaggc atcactcctg
     1501 catggagtcg cttgcgtttt actatggatg aaggtttggt taatgccgta aaaaaagcct
     1561 ttgtagaact ttatgataaa agacttattg tacgtggaaa ctacatgata aattggtgta
     1621 ctcatgatgg cgctttaagt gatatagaag ttgaatacaa agaaaacaaa ggaaaacttt
     1681 atcatattaa atacttttta aaagatagcg atgaattttt agtagtagcc acaacgcgtc
     1741 ctgaaacttt ttttggcgat actgcagtta tggtgcatcc tgatgatgaa cgctatgcta
     1801 aatttgtgga caaagaagtg attttgccta taagcaaaaa agccattaaa atcatagccg
     1861 ataaacatgt agaaaaagaa tttggaacag gagttgtaaa agttactccc gctcatgaca
     1921 tgaacgatta tgaagtagga cttagacata atttagattt tataagtgtt tttgatgaaa
     1981 aaggaatttt aaacgagcat tgtttagagt ttcaaggttt agaacgctta gaagcaagag
     2041 aaaaaatcgt agccaaactt gaaagtcttg gttttataga aaaaatagaa gagtataaca
     2101 atcaaatagg atattgttat cgttgcaaca atatagttga accttatatc tccaaacaat
     2161 ggtttgtaaa aaaagaaatc gcccaagaaa gtatagaaaa agttgcgctt ggagaaagta
     2221 aattttaccc aaatcactgg ataaatagct ttaatgcttg gatgaaagat ttaagagatt
     2281 ggtgtatttc aagacaactt tggtgggggc atcaaattcc tgtgtattat tgcgaatgct
     2341 ctcatgaatg ggcaagccaa catacgccta aaacttgtcc aaaatgtcaa agtcaaaatt
     2401 tcaaacaaga tgaagatgtg cttgatactt ggttttcttc aggactttgg gctatgagta
     2461 ctctaggctg gggaaatgaa aattggggta aagataaaat ttggtctgaa aaggatttaa
     2521 aagattttta tcccaattct ttactcatta caggttttga tattttattt ttctgggtgg
     2581 ctagaatgat gtttcaaagc accaatgtct tacatcaact tccttttaaa gatatttatt
     2641 tacatgctct tgtgaaagat gagcaaggta gaaaaatgag taaaagcctt ggaaatgtta
     2701 tcgacccaaa tgaaagcatt aaagaatata gtgctgatat tttacgcttt actttagcac
     2761 ttcttgctat acaaggacgc gatattaaac ttagcaatga taaactttta caagttagaa
     2821 attttacaaa taaaatttat aatgctaaaa attatctgct tttaaatgaa agtaaatttg
     2881 aagatttgga aaatatcaca cttcattcag aattagcaaa atatatttat gccaaatttc
     2941 aaacttgtgt taaggatgta agagaaaatt tagacaatta tcgctttaat gatgcggcta
     3001 atactctata taaattcttt tgggatgatt tttgcgattg gggtatagag cttagcaaag
     3061 ccgaaaaatc aagcgttaaa gaacttggta gtattttcaa agaagcttta aaacttttaa
     3121 atcctttcat gccttttatc agcgagtatt tataccacaa actaagcgat acagaactta
     3181 aaacaagccc ttctattatg ataagcaaat atccaaaatt taaagaacaa gataaaaata
     3241 tagaaaaaat cttttctttg ctcatagaaa gcatagttag tatccgccgt gctaaaagtt
     3301 taatcgatct tggaaattct aaaatagaaa aagcttatat caaatttaac gataaaaaaa
     3361 tcaaagatga aatcaaagct tatatgaatt ttatcataat gctcgcaaag tgcgagcaaa
     3421 tagaatttag tgaagaaaaa ttaccaaagg caatatgtga tgttagcgag aatttagaaa
     3481 tttttattac gcttgaaaat gttgatttaa gtggtatttt aacaagactt gaaaatcaaa
     3541 aaaataagct tgaaaaagaa agtttcaagc ttaactccat gctttcaaat gaaaaattca
     3601 tcgctaacgc acctaaagag gtggtggagc aaaataaaga agctctagaa aatttaaaaa
     3661 ttcaacttga aaaaatatca gttgaacttc aaaatctaag aggttaaaaa tttgataaaa
     3721 ataaaaaatt taaaaaaata ttatggcaag gaactcgtga taaacgatgt ttctttggag
     3781 attaaaaagg gtgaaattta cgccatagta ggtcatagtg gagctggaaa atccactctt
     3841 ttaagatgta ttaatggact tgagaattat caagaaggaa gtttaaaagt ctttgatcaa
     3901 gaaattaaag atttaagtca aaaaaaatca aaagagttaa gaatgcttag aaaagatata
     3961 gggatgattt ttcaaaattt tgccctaatg gagcgcaaaa atgtatttga aaatgttgct
     4021 atgcctttaa gaacacacta tactcagtgt aaatttcatg ccaagctttt taataaagaa
     4081 tacatgagcg aaaaagaaat tgcccaaaaa gtcaattcct tacttgaaat cgtagggctt
     4141 gatcataaaa acaaatccta cccaagagaa ctgagcggag ggcaaaaaca acgtgttgct
     4201 attgctagag ccttagcttt aaacccaaaa attttactta gtgacgaagc tacttcggct
     4261 cttgatccaa acactacaaa aaatatttta gagcttatat ctaaaatcaa tgctgaattt
     4321 gggattactg ttgttttagt aactcacgaa atggatgtgg taaaagacat agctcaaaaa
     4381 gctttattac ttgaacatgg acaaatcata ggaagtggag caattgatga gcttttttta
     4441 aggcctaatg ccaaaatgaa agaattttta ggagaaagcg acttcttgcc tgagcacgga
     4501 cttaatatca aactttactt tccaaaagaa gttgcccaaa atagcgtcat cactcatatg
     4561 gcaagaactc taaatataga ctttaacata gtttggggta aaatagaaaa actgaatgga
     4621 aaagccttgg gaaatttagt tataaatata aatgaaaagg ataaagacaa ggttcttgat
     4681 tacatagaaa aaagtggagt attatgggag gtggcatcat gaatgaagaa aacatctcta
     4741 ttgtcagtgc tttttttagt agaatttctc aattttttaa tgaattttct tggcaggata
     4801 ttaaagaagt gagtttaagt tctatcacga gtttcaatga aaattatgaa aacattttaa
     4861 aacctgcact taatgaaaca atttatatga gtttaatggc tgtactattt ggatttttat
     4921 tggctatcat tcctggaatt ttacttgcta tttgggataa aaatggaatt aaagaaaata
     4981 aaatcgctta tagtatttta gattttatta ccaatatatt acgcgccttt ccatttttaa
     5041 ttcttatagt tgttctttta ccactttcta aaatcatagt aggcacaagc ataggtacaa
     5101 atgctgccat agttccttta gctatcggaa tagctcctta tttggcaaag atgcttgaaa
     5161 gcgcttttaa agaaatagac aaaggaatta tagaagcagc aaaaagttat ggtgctagca
     5221 atattcaaat tatcttcaag gttatcttta gtgaagccct tcctgctata attagcggaa
     5281 ttaccctaac tttgatcttt accattggtt tttctgctct tgctggaact gtcggtggtg
     5341 gaggattagg agatgtagct attcgctatg gttatgaaag atttaacaaa gaagttatga
     5401 ttcaaactgt agttatttta cttatattag ttcaattagt tcaaattcta ggtaatttat
     5461 tttatacttg ggctaaaaat agtaaaacta catatatcat tgccactcta ttgattttac
     5521 ttggagttag tatagttatc aatataaaca atgatgaaaa tttcttttgg caagtaattg
     5581 tttttatctt atttttagga agtttgcttt ataaaggttt caaaaaataa ggagattata
     5641 tctcctttta agataaatat aagttttttt aagtaaaatt taaaaaaaat taaaggaatt
     5701 aaaatgatgt atcagatgcg ttaatctgac tatcaacaag tttttatatg cttcttcctg
     5761 atagtcagag tgaatttatt aagattaaag caagcacaaa atgactaaaa aggaaaaaaa
     5821 tgaaaatcaa atctttattt atagcaagta ttttaacatt aagtcttaat gcaaatgcat
     5881 tagaaaccat cacagttgca gcaactcccg tccctcatgc tgaaatccta gaacaagtaa
     5941 aacctgattt agaaaaacaa ggctataaac ttgaaatcaa agaatttacg gattatgttt
     6001 tgcctaatct agctgttgat aacggagaag ccgatgcaaa ttttttccaa catactcctt
     6061 atttggaaga atttaataaa aacaaaggca ccaaacttat caaagtagct gccatacaca
     6121 tagaacctat ggctgtttac tccaaaaaat acaaaagtct agatgatatt aaagaagggg
     6181 ttaaaatcgc cattccaaat gatccaacca atgaaagtag agctttagat attattgcaa
     6241 aaaaaggttt ggtaaaattt aaagataagg ctttaaaaac acctcttgat attatagaca
     6301 atcctaaaaa aattaaattt gtagaattaa agcccgcaca acttccaaga gctttgaatg
     6361 atgttgattt tgctgtaatt aattccaact acgctctctc tgcaaatcta aatcctgcaa
     6421 aagatagcgt atttatcgaa gataaagaaa gcccgtatgc aaacattctt gttgtaagag
     6481 tgggacatga aaacgatcca aaaatcaaag ccttaatcca agctctacaa agtgataaaa
     6541 tcaaacaatt tatcatagaa aaatacaacg gatctgtttt acctgctttt taattttgtc
     6601 ccttacctag ggactttttt cttaagtaca aaggagtttt tatgaattta tttaaaatta
     6661 ttatactcgc ttgcattcta aatttatcta gcctatttgc acaaaacatt actataggag
     6721 ccactccaaa tccttttggt agcttactag aactaatgaa agatgatttt aaaaacaaag
     6781 ggtatgagct taaaatagta gaattttcag actatatttt gcccaatcgt gcattagagg
     6841 aaaaagaact tgatgcaaat ttatatcaac acaaaccttt tttagaagaa tacaacctaa
     6901 aaaaaggttc aaatttaatt gcaacaacgc ctgtacttat agctccagta ggagtttata
     6961 gtaaaaaaat caaaaattta gaaaatctta aagaaggtgc tagagttgct atacctaatg
     7021 atgcgaccaa tgaaagcaga gctttagagc ttttagagaa agcaaaatta atagagctta
     7081 acaaaaatac tctaaaaacc ccattggaca taaacaaaaa tccaaaaaaa cttaaattta
     7141 tagaacttaa agccgcacaa cttccaagag ctttagatga tgttgatatt gctataatta
     7201 attctaattt cgcacttgga gccggtctga atccaagtaa agatactatt tttagggaag
     7261 ataaaaatag cccttatgta aattatgttg tggtacgctc agaaggtaaa aatagcgaaa
     7321 aaaccaaagt aattgatgaa attttaagaa gcgataaatt taaagccatc attaatgaac
     7381 attataaaga tatattaatc ccagcttttt aggagtataa tatgaatatt aaaaaaatat
     7441 ttttaagtgt tttatttaca attagcctta gttttggggc agataaaacc ataatcatag
     7501 gtgcaacacc aacgccttat gctgaaattt taaatttctc taaaccctta tttcaagaaa
     7561 aaggttggaa gttaatagtt aaggaattta atgactataa tatacctaac atcgctttaa
     7621 atgaaaaaga tttagatgca aatttatatc agcataaacc ttttttagat gattttaata
     7681 cccacaaagg aacaaaatta agttctttag gtgctattgt tttagttcct atggctatat
     7741 attctaactc cataaaagat ataaaagaca ttcctaatgg tgctaaaatc gctataccta
     7801 atgatgctac caatgaaagc agagctcttg atttactagc taaagcaaat ttaatagagt
     7861 ttaaaagtca aagcaccctt aaaaccccta ttgacataag taaaaatcca aaaaaactta
     7921 aatttataga gcttaaagcc gcacaacttc caagagccct aaatgatact gatttggcta
     7981 ttattaccac aaactatgct cttggagcag gcttaaaccc tttaaaagat ggtattttta
     8041 tggaagataa agatagttta tatgctattg ttttagctac aagaaaaggt gaagaaacaa
     8101 gtcaaaaaag tcttgttatt aaagaaattt taacaagcga taaaattaaa aattttatca
     8161 tagaaaaata caaaggctct gttatcccta ctttttaact ctatacaaag ccttctaaag
     8221 gctttgttaa acttataaaa gctaaaatac tatttattgc attataattc ttaggataaa
     8281 aatgaaaatt atttttttaa ctttttttat tgtgataaat tatatccaag cagctagttt
     8341 agaagaaatc aaaacagcac tagctaaaga atttagaaat aattttccta aaattataat
     8401 ttctcaaatt gatttaaaaa taacatcatt gcctaaagat tttgatcaat atgaatttct
     8461 aagaatcgct aatgggcgtt ttaatcaagc acaaggcttt ttaagggctg aatttaaaac
     8521 tccgcaaaat atacaaaaaa atgtattttt tagatatttc attcaagcaa atttagaagt
     8581 tttaaaaagc gaacgcgcta taaaaagagg agataaactt ggagcttttg actataaaag
     8641 cgtattgatt gattttgata aagttccttt aaatgcctta accttagatg atgtagataa
     8701 tcttgtagct aaaagcaata ttaacaaaaa cgccatttta agagcaaata tgtttaaaac
     8761 cacagcttta atacgccgaa atgatcctat aatcggggtt ttaagcgaag caaatgttga
     8821 tgttttaatc gaacttgtgg ctttgcaaag tgcaaatatg ggcgaaagga ttcgtgcaaa
     8881 aaacaaagaa ggtaaagtta tgcaaggtat cgtagtgggt aaaaatagga tgattataca
     8941 atgaaagttt tattgggaat ttctggttca agcagtgtca atttaggctt aaaattatta
     9001 aaaaatttag aaaatcaatg cgaactttat tgtattttaa cccaaggtgc aaaacttaac
     9061 ttcaaaactg aaaatcaagc aaatttagaa gaaatttgtc aagaaaattt taaatacact
     9121 cattttttag atgataaaaa tttaagtcta agtgtagcaa gtggatcttt tggaatagaa
     9181 aaaaccatca ttgctccttg ttcaatttca agtttagcaa aaattcacgc tggttttgca
     9241 gacactcttt taatgcgtgc tgcagcagta gccctaaaag aaagaaaaaa actcatctta
     9301 ggggtacgtg aaatgccttt ttctacttta aatttagaac atatgttaaa acttagccaa
     9361 atgggagtta tcatcgcccc tcctattatc gcaagctatt ctaaagcaaa caatctagag
     9421 caaatggaaa attttatcgc aggtaaatgg ttagatcttt tagaaataaa acacaattta
     9481 tatgaaaaat ggcaaaattt ttagtttaaa tttgttatat ttttaaaaaa aattggagca
     9541 aaaatgactt gtttatatcc tgggactttt gatcctatta ccaacgggca tttagatgtt
     9601 ataaaacggg ctttaaaaat ttttgatgaa gtcatcgttg ccatagcaaa aagtgaacat
     9661 aaaaaacctt gctatgattt agaaaaacgc aaagaactag ccctgctcgc aacacaaaat
     9721 ttaaaaaatg ttaaaatcat tgcttttgat aatttacttg tagatttagc caaagaatta
     9781 aaagttaata ctataatccg tggacttaga gcagtgagtg attttgaata cgaattgcaa
     9841 attggctatg caaatcacgc actttgggaa gatatggaaa ccatttatct tatgccaagt
     9901 ctaaaacatg cttttatttc aagttctatt gtgcgttcta tagtagcaca tgggggtgat
     9961 gtaagttctc ttgttccaaa agaaattcta ccttttttaa aggatcaatc ttgtatgtag
    10021 tttttgaagg tattgactgc gtaggaaaaa gtacgcaaat ttcactttta aaagaaattt
    10081 ataaagacgc cattttcaca ctcgaacctg gcggaacaga acttggaaaa catttaagag
    10141 aaattttact taataaaact catcctatta acaaaagagc tgaactcttg ctttttttag
    10201 ctgatcgtgc tcaacatttt gaagaaatct taaaaaccaa tcaaaacaaa ctcattatta
    10261 gcgatagaag ttttatttca ggcatggctt atgccaaaga ttttgaaaac gatttgcttt
    10321 ttgctttaaa tagttttgct ttagaaaatt tttttccaca aaaaattatc tttttaaaag
    10381 gagatgcaag ccttatccaa gaacgcctca gtcaaaaaga actagatagt atagaaaaac
    10441 gtggcattga gtatttttta agcgtgcaag ataaactcga aaaagtgctt cattttttaa
    10501 aagaaaaaat ttctgtagaa attttaacac ttgacgcaaa agaaagtaaa gaaaaattac
    10561 accaacaaat aaaggaattt ttacaatgat taacgcttta aaaggaatga aagatttatt
    10621 agataaagat gcatattatt atgaaaaagt gattaaaatc tgcgaagaag tagctaaaaa
    10681 ctatggcttt acttttatca atacaccgca tttagaactt tgcacccttt ttaaaagaag
    10741 cgtaggagaa agttctgata tagtaggtaa agaaatgtat gaatttatcg ataaaggcga
    10801 aaatcatgtt tgcatgcgtc ctgaaggaac tgctggggtg gtgcgtgcct atatagaaaa
    10861 aaaactcgat aaaaacacta gtgtgaaaag atggttttat tatggttcta tgtttcgtta
    10921 tgaaagacct caaaagggtc gcttaagaga atttcatcaa tttggagttg aaagccttgg
    10981 catacctaat gtttatgaag atgcaagcat tattttaatg ctagtagaaa ttttctcacg
    11041 ccttggtatt gattttaaac ttcaacttaa ttctttaggc tgctcacaat gcttgccaaa
    11101 ataccgcgat aggctcgttg aattcttaga ttccaaagaa ggtttttgtg aagattgttt
    11161 gcgtagaaaa aatttaaatc ctattcgtgt cttagattgt aaaaatgagc attgtcaaaa
    11221 tttgcttgaa aatgctccgc ttttgatcaa taatttatgc acctcttgcc aaaaagactt
    11281 tgaaacactg caacaaattt taaaggataa tggagttaaa tttgagttag attcaaaact
    11341 tgtgaggggt ttggattatt attctaaaac ggcttttgaa tttataagcg atgaaatagg
    11401 agcaaaggct gctatcgcag gtggaggacg ctacgataga cttatagagt atttaggtgg
    11461 aaaaagtggc tatggtatag gttttgccat gggtatagaa agaattataa ctattttaga
    11521 acaaaaagaa gaaaagattc aaagagaagg aatttatctt tgtgctatgg atgaaattta
    11581 tatccaaaaa cttttgtata tcgctacaaa tttaagaaaa gaatataaag tacttttaag
    11641 ctatgaagca agaaaactag ccaaacatct tgaaaacgcg gataaaaata atactgaaat
    11701 ttttctttgc atgggagaaa atgaagcaca aaatgaaagt ttgttttata aaaatttagc
    11761 aaaaaaagaa gaaaaaatga ttaaaatttc agacttaaag aaggttttat gatggattat
    11821 ggtattgata tttggggaaa tgaaaatttc attatcaaaa atggtaaagt ttgtatcaat
    11881 tacgagaaaa aacctgctat tattgatata gttaaagaat taagagatga tggatacaag
    11941 gggcctttac ttttaagatt tcctcatctt atccaaaaac aaattgaaaa tatttacgga
    12001 aatttcaata aagcaagaaa ggaatttggc tataaaggag gatttaacgc tgtttatcct
    12061 ttaaaggtca atcaataccc tggttttgta aaaaatcttg taaaacttgg aaaagactat
    12121 aactatggac ttgaagcagg ttctaaggca gagcttttac tcgctatggc ttataataac
    12181 gaaggcgcac ctattaccgt aaatggcttt aaagatagag aacttatcaa cataggcttt
    12241 attgcagctg aaatgggaca taatatcact ttaaccatag aaggacttaa tgaacttgaa
    12301 gctatcatag acatagctaa agaacgcttt aaacctaaac caaatatagg cttacgtgta
    12361 cgtttgcatt ctgctggagt tggaatttgg gcaaaaagcg gtgggattaa ttctaaattt
    12421 ggacttacat ccactgaact catagaagcg gtaaatttac tcaaagaaaa caaactttta
    12481 gaacaattta ccatgattca ctttcatcta ggctcacaaa ttaccgaaat tcaccccttg
    12541 aaaaaagcct taaatgaagc aggaaatatc tatacagaac ttagaaaaat gggagctaaa
    12601 aatctaaaag ctattaatct tggtggcggt ttagctgtgg aatactcaca atttaaaaat
    12661 gaaaaaagta gaaattacac cctaagagaa tacgctaacg atgtagtttt tatcctaaaa
    12721 aacatagccg aacaaaaaaa agatttagag cctgatattt tcatagaaag tggacgtttt
    12781 gtagcagcta atcacgctgt tttaatcgct cctgtattag aacttttttc tcaagaatac
    12841 gcagaaaaca aactcatact taaaaaacaa aatccaaaac ttatcgatga gctttatgat
    12901 ctttataaaa gtataaaacc ttccaatgct ttagaatact tgcacgatag catagatcat
    12961 ttagagagta ttttaactct ttttgatttg ggctatgtgg atttacaaga tcgttccaat
    13021 gctgaaattt taactcattt gattacaaaa aaagccatct tgcttttagg cgataagcaa
    13081 aatcctgcgg atttacttgc catacaagat gaagtgcaag aaaggtattt ggtaaatttt
    13141 tcgctctttc aaagcatgcc tgatttttgg ggtttagaac agaatttccc catcatgcca
    13201 cttgatcgct tagatgaaga accgacacga agtgcaagta tttgggatat aacctgcgat
    13261 agcgatggag aaatttcata ctctaaagat aaacctttat ttttgcacga tgtagatgta
    13321 gaaaaagaaa attattttct agggtttttt cttgtaggtg cctatcaaga agtacttgga
    13381 atgaaacaca atctttttac tcatcctact gaagctatta taagcatcaa tgaaaaaggc
    13441 tatgaagtcg aggggattat agaagcgcaa tccatacttg ataccttaga agatttagac
    13501 tatgatatac acgctatcat ggatatactt aatgaacgca taagtaattc taagcttgta
    13561 aatgataagc aaaaaaagca tattttaggc gaactttatc ttttcttaaa tgataatggt
    13621 tatttaaaaa gcataggagt ttagatgaat ttttggggta ttataaaaga agatttttct
    13681 cagccaaagg cacaagatcc agcttttaat tcttgtatag aacttttttt taattaccct
    13741 ggagtatggg ctgtagtaaa ttaccgcttt gcacattttt tttacataag aaattttaaa
    13801 cgcattgcta gaatgattag cggaatttca caattcttaa ctggggtaga tttgcaccct
    13861 ggagcagaac ttggaaggcg tatttttata gatcatgcca atggagtggt tataggtcaa
    13921 acagcaatta tagaagatga tgttttaatt tatcaaggcg ttactttagg tggaacaagc
    13981 cttgaaaaag gtactaaacg ccatccaacc ataaaaaaag gagtgatcat aggctcaggc
    14041 gcaaaagtgc ttggcaatat caccatagga gaaaatgcca aaataggctc aaatgctgta
    14101 gtggttaaag atataggtgc aaatttaact gccgttggaa ttcctgctta tattatcgaa
    14161 gagcgtaaaa ataaaaacat tagagccata gatgcaaatt gcgatgacaa actagaaaag
    14221 ttagaaaaga aaattttaga acttgaaaat cttatattaa aacaacctga atcacaaaaa
    14281 taataatttt ttataataca taaaattata tgtattatta tgcgtattaa tttttcctaa
    14341 aaattaatac aaattttcac atttattgaa atttacaact catttttaaa ttaaatttat
    14401 tgtaaaaatg caattttctg ctaaaattaa acaaaaatta tcaaggattg aaaaatgctt
    14461 acaaaaagat ctcaagtttt agaagaatct atcactttag ctatcactgc acttgccaat
    14521 gaacttaaag ccaaaggcga ggatatcatt agtttttcag cgggtgaacc tgattttgac
    14581 acaccacaaa ccatcaaaaa tgccgctata agtgctattg aaaaaggatg tggaaaatac
    14641 actgctgttg caggaattcc tgaagtatta aaagctattc aaaccaaatt taaaaaagat
    14701 aataatcttg attatgaaac aaatgaaatc atcaccaatg taggcgcaaa acactctctt
    14761 tttgaatgta tagaatgctt agtagaaaaa gatgatgaag tgattatccc tagtccttac
    14821 tgggtaagct atcctgaaat ggtaaaattt gcaggtggaa aacctgtatt tatagaaggc
    14881 ttagaagaaa atggctttaa aattaccgct gaacaattaa aaaaagctat cacagctaaa
    14941 accaaagttt tgatgctaaa ttctccttca aatcctgtgg gatcgattta ttctaaagaa
    15001 gaattaactc aaattgctaa agttttagaa ggaacgcaaa ttactgtttt aagtgatgaa
    15061 atgtatgaaa aacttcgcta tgatggtttt gattttgtag cttttgcaag tgtaagcaaa
    15121 gatgctttaa aacgcactgt gaccattaac ggacttagca aatgtggagc tatgccagga
    15181 tggcgttttg gctatatggc aagcaaaaat aaagccctaa tttcagccgt taaaagactt
    15241 caaggacaaa gcacttcaaa tatttgctct atcactcaac atgcagccat tcctgcttta
    15301 aatggagaat gtgataaaga tatagaaaaa atgcgtcaag cctttgaaaa acgccgtaac
    15361 ttagccttag acatacttaa acaaatccca aatatcagtg tttataaacc agaaggtgct
    15421 ttttatcttt ttgtaaatat acaaaaaata gaaaaagatt ctatgaaatt ttgtcaaaag
    15481 ttacttgaac aagaaaaagt tgccgttgtt ccaggtgtag gttttggaat ggatggatac
    15541 ttcagacttt cttatgctac aagcgatgag cttatcaaaa aaggtttaga aagaatagca
    15601 aatttcatta aaaactataa ataattctag gttaaagcct agaattattt aggcaaatta
    15661 aaaccttata aaatcaaggc tttttaagca cagcatttac cctttgaaca ctatctgatt
    15721 tatttaaact caatcttatt atagaatttt ctaatccacc taaagaatgt gctacatttg
    15781 cctctaggct tatcatatct aaagcattta attcaaattt ttccttttcc acttcaaacc
    15841 aaattttacc gcttaaaact tgaacatgta tagcaaaagg agctttatgc tctttcatca
    15901 cactgtcttt agctaataaa atttgaattt ctttaccttt ttcattgtca attaaaacat
    15961 tgattttcac ttcttttggg ctaaattccg ctccattcca ttgaatgatt ttcacaaaat
    16021 ctcctttttt agttttacaa aactatagca aaagccaaaa tataaattat aaacttgtgt
    16081 taatttattc ttctttccac caaaaatcct gtttaaattt agctcctact tcataagcct
    16141 cgcccatttt tggtgtgata aggggtaaat ctaaattttc ataaagaaat tttaccacct
    16201 cattccatgc atgagttcct gctaaaaatc tcccccaatg tataggcatg acagcctttg
    16261 cattaagatc ttttgcctct tttaaaattt gctcaggaaa agagtgtgaa tatggccaag
    16321 cgatattaaa ttgtccgctt tcaagacaag ctaggtcaaa acttccaaaa tactcaccta
    16381 tttttttaaa atgtgtaaaa taccctccat ctgcgctaaa aaacactctc ttatctacac
    16441 ttaaaaattc catcacaaaa gaagcccaaa gggttttgtt tttaccatct cccctacttg
    16501 aactgtgctg tgcaggtgtt gccatgattt ttaaatcacc aaattctatt ccactccacc
    16561 aatcaagctc tatgattttt ttctcgctca ccccatagct ttttagataa tttcccactt
    16621 ttaaaggagt gataaaaaat ttagccttat cttttaaagc ttttacactc ttagcatcta
    16681 aatgatcaaa atgcgaatgc gtgataatca cagcaaaaat ttcattaaaa tcatttatat
    16741 tataaacagg agcattttta aaagccttgt tgataaaaga aatgggcgaa gcatgagtgt
    16801 taaaaatagg atcaatcaaa attttatact ctttaaaact aataaaaagc gaagaatggc
    16861 caagccaagt aatatgtggg gtgctaaaac cactcaaatc aggcttgaaa aaaggtaact
    16921 taaaagaagg gatggcattt tttggataaa gataataata cctcaaaatt tctttaaaag
    16981 acactttagg agttataaga ctgtgctcat tttcattaag aaaaatttca tattttttac
    17041 cctgcacttt tttagctttt gatcgttgtg tattggaaat atcaaagatt ttaaatgata
    17101 aattcaaatt tttcctttta tgtttattaa g
//
LOCUS       DAPIWJ010000029        17117 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.029, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000029 DAPIWJ010000000
VERSION     DAPIWJ010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17117)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17117)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17117
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.029"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            140..289
                     /locus_tag="RJ259_000748"
     CDS             140..289
                     /locus_tag="RJ259_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:sulfate symporter"
                     /protein_id="HDV7366477.1"
                     /translation="MEDNSWHFLGLFIAVIMAVILQVMPLGPVCMIAIAIVALSGITT
                     TQLKI"
     gene            450..593
                     /locus_tag="RJ259_000749"
     CDS             450..593
                     /locus_tag="RJ259_000749"
                     /inference="COORDINATES: protein motif:HMM:NF013132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDV7366478.1"
                     /translation="MKDALSGFSNSLIWLIVISIIVARGVIKTGLGEHLAYHFISILG
                     KKT"
     gene            596..847
                     /locus_tag="RJ259_000750"
     CDS             596..847
                     /locus_tag="RJ259_000750"
                     /inference="COORDINATES: protein motif:HMM:NF013132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDV7366479.1"
                     /translation="MAYSIAFCETILAPVTPSNTARAGAIINPIVQVIARSFKSTPED
                     GTQNKIGTYLSLVNYQEPILFHQLCLLQLQLQILWWLIL"
     gene            901..1125
                     /locus_tag="RJ259_000751"
     CDS             901..1125
                     /locus_tag="RJ259_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002888971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDV7366480.1"
                     /translation="MFLPGIAAMLSMPLMLYFLSPLEIKSTPNASTFAKDKLKELVKM
                     KNSEKIMLSVFVSLLLLWAGALGLFFWNFS"
     gene            1064..1303
                     /locus_tag="RJ259_000752"
     CDS             1064..1303
                     /locus_tag="RJ259_000752"
                     /inference="COORDINATES: protein motif:HMM:NF013132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDV7366481.1"
                     /translation="MSRFYFYGLELWACFFGISLDATSVALLGLSLVLISGVLTFGEV
                     LAEKAAWNTLVWFSALVMMATLLGKLGVTQFLAEA"
     gene            1426..1671
                     /locus_tag="RJ259_000753"
     CDS             1426..1671
                     /locus_tag="RJ259_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDV7366482.1"
                     /translation="MFFIVQLALGAPPLFYAFIMIASGNVMMALTHYAIGTAPVIFGT
                     GCVTLKKWWSIGFVISIVDIVVMIAVELFWWKILGFY"
     gene            complement(1699..2715)
                     /gene="mnmA"
                     /locus_tag="RJ259_000754"
     CDS             complement(1699..2715)
                     /gene="mnmA"
                     /locus_tag="RJ259_000754"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HDV7366483.1"
                     /translation="MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEEN
                     IKKVEKVANFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLL
                     EFAKSLGCEKLATGHYARLENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKK
                     EDVKKFASTIEVLKSFATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGK
                     HEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFI
                     DAKELVCEVKIRYRSKSTPCKVEIYEDKSAKITLKDPVYGLASGQMAVFYDHDKVIAS
                     GFIE"
     gene            complement(2715..3320)
                     /locus_tag="RJ259_000755"
     CDS             complement(2715..3320)
                     /locus_tag="RJ259_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HDV7366484.1"
                     /translation="MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDNFYYQQAKILA
                     QKCVQNGFCVISGGGGGIMRAANEGAFSQKNNTNSMSSVGFNIFLPHEQKLNDFVEYN
                     ITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
                     RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI"
     gene            complement(3441..4229)
                     /locus_tag="RJ259_000756"
     CDS             complement(3441..4229)
                     /locus_tag="RJ259_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366485.1"
                     /translation="MINSLNSNLNYDYNTSNFKQDKNIDFKINKHGVAVITGEGALPY
                     RGKKFEYNPKIFGLDESISKKDMQEFNNFMKSNALKDPNKIEKSPLKDFNPAYTKWDP
                     TTEKMMLGFFVSYSKMFHLGYDIIKKADEFYKEFDALISKDLSLNEFKTKYIDFKQRY
                     DEFVKEYEMAMGDKMLLSSDDEIITQQSEKPFKAIQGESKNKETYKDDSTRNELVKKL
                     LEGKFSTSKELELLFGMKFSDDDAGEFNKILSLNSTPKSIDIKA"
     gene            complement(4243..4738)
                     /locus_tag="RJ259_000757"
                     /pseudo
     CDS             complement(4243..4738)
                     /locus_tag="RJ259_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779308.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            5171..6026
                     /locus_tag="RJ259_000758"
                     /pseudo
     CDS             5171..6026
                     /locus_tag="RJ259_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343521.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            6011..6610
                     /locus_tag="RJ259_000759"
     CDS             6011..6610
                     /locus_tag="RJ259_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HDV7366486.1"
                     /translation="MEKILKILLFLPILALSTKAEWVVKSYQEIKNERVIRQTYEQSC
                     GASSLATLLNILDDQKKFDELELLKIMSGQELYTDMVSFVDLNDAVKKLGFQSNSYQI
                     NRENLDKLVNIPMLVKIEDDPRFPHFVIIINHKGNYLQVLDPSHGEYISSKSQFFSIW
                     DRYNKGGYALIVAPKKELKPFKLNTPKSLHFDFSPFSLF"
     gene            complement(6659..7501)
                     /gene="fliY"
                     /locus_tag="RJ259_000760"
     CDS             complement(6659..7501)
                     /gene="fliY"
                     /locus_tag="RJ259_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliY"
                     /protein_id="HDV7366487.1"
                     /translation="MINDFLKMFTNECISTIEGLTGKSAEFSEYKEFDVNTSDTLKAP
                     LVYAIFNIANGGKIGILAGAILMSAIGEWMMGEEEITKNDKLGPDEMDAAKEAIQNII
                     SAFSTTLGAQKDIPKMDFSIESCEFVPESVDFKDFKKLFLYDVKIGDLEEQVSLAMDQ
                     TLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKML
                     LKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITEIGSKKERL
                     EQLR"
     gene            complement(7498..8577)
                     /gene="fliM"
                     /locus_tag="RJ259_000761"
     CDS             complement(7498..8577)
                     /gene="fliM"
                     /locus_tag="RJ259_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HDV7366488.1"
                     /translation="MAEILSQEEIDALLEVVDDNTDTPIASNSKDEKDERNIVVYDFK
                     RPNRVSKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSP
                     TSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYEASRELTDIELNLLDSILR
                     IIMQRLKESWATVTEIYPSIEAKESSPNVVQIVSQNEIVIMVVMEIIIGNSSGMVNIC
                     YPVVHLESILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEF
                     LELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEI
                     LEKYEEERKAKASVYDEPEEEDEEI"
     gene            complement(8577..9269)
                     /locus_tag="RJ259_000762"
     CDS             complement(8577..9269)
                     /locus_tag="RJ259_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HDV7366489.1"
                     /translation="MLKEPPKAYAQMLKKEQDELVLSYMPALRAMAFRLKERLPSSID
                     VNDLISIGVEEMIKLSRRYDKEQNDNFWGFARKRVNGSMLDYLRSLDVMSRNNRKIIK
                     DIDAIMDEYFLEHECEPDDEYLAKKLDLDVEKIKEVRTAHAISYTLPIDEQIELYNED
                     NTLEKIEKEELLEKIHEVLDDLKERDQLIIQLYYYEELSLKEISEILQISESRISQIH
                     KKLLKKLRERLV"
     gene            complement(9250..9606)
                     /locus_tag="RJ259_000763"
     CDS             complement(9250..9606)
                     /locus_tag="RJ259_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366490.1"
                     /translation="MRPENYVAFFTVCGFFIGLAFSIISIDEAFDILIFTCFITFMFY
                     VFVHIAIMNFIDVKKISGRIFNKHDYEKTSNNIINDLVIREKKMDIILEKLNEEREEL
                     KKNEFKERRRNAKRAA"
     gene            complement(9625..10491)
                     /gene="flhG"
                     /locus_tag="RJ259_000764"
     CDS             complement(9625..10491)
                     /gene="flhG"
                     /locus_tag="RJ259_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis ATPase FlhG"
                     /protein_id="HDV7366491.1"
                     /translation="MNNQANKLRNLMSQNGTKKSQNTHFIAITSGKGGVGKSTISANL
                     ANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLHVLRGECSLEDILIEVKPNLWL
                     IPGESGDEILKYNDKNIYERFLNQASILDELDFLIIDTGAGIGGNILNFLEMADEVIV
                     VTVPDPAAITDAYATIKTTSKTKENLLMLFNVVKNENEALKVFENIKKVADANIKNPL
                     NLEFLGHLSASKDVSGSIKKRTLFSDENTASSDEIKALASKLLYRLERKVLDNVSNRS
                     FSSFFRKIIERF"
     gene            complement(10484..11938)
                     /gene="flhF"
                     /locus_tag="RJ259_000765"
     CDS             complement(10484..11938)
                     /gene="flhF"
                     /locus_tag="RJ259_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HDV7366492.1"
                     /translation="MGQLIHTFTVEDTEQIIPKVKEDYGDKALIITNKQIRPKTLNRS
                     ALYEVMVAIEESDYEEHLKKQGKSLPAKKSSPKPSSTSLAEEKIRSQIPQEDEDVVLD
                     FSNTRLNTNLNTVKNNDLAKKTYQDFPQNKINPHQNKTLGFDDFKEKLSEVSNEISKV
                     TNTPLENYTPNPNYNKKIENFEKQFEKQINKLNDKIDLLADMMWDDKAEARKNLMIPP
                     EFASIYKQAKESGMLENHLEAIMKATIENMPAAMKTNKDAVQRYFHSLLRNILPCRVE
                     SDIKKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQY
                     AKMMKLPIIDSIEPKDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAE
                     IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSF
                     FSIGQEVPDDLEVANSDFLVHCILEGFNKGKNNE"
     gene            complement(11948..12421)
                     /gene="folK"
                     /locus_tag="RJ259_000766"
     CDS             complement(11948..12421)
                     /gene="folK"
                     /locus_tag="RJ259_000766"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HDV7366493.1"
                     /translation="MLKIQGVKHFEKSRFFPFFSQNIRSFKYLALIGLGSNIEPEKKR
                     FDMLFRVMMDDKRFKILSTSPMLINEAFGFKEQKDFTNAVMLIQTNLHARALLKVLLY
                     YEVKFKRKRTFKNAPRTLDLDLLYFSQKVKRDKWCEVPHKGAKERVSVILPLGMI"
     gene            complement(12424..12903)
                     /gene="aroQ"
                     /locus_tag="RJ259_000767"
     CDS             complement(12424..12903)
                     /gene="aroQ"
                     /locus_tag="RJ259_000767"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HDV7366494.1"
                     /translation="MKIMIIQGPNVNMLGVREVGIYGAMKMEEIHEQMKLAASQNNVE
                     LDFFQSNFEGEIVDKIQECLGTVDGIIINAAGYTHTSVAIRDAIAAVALPTIEVHISN
                     VYRREEFRQKSLIAPVCSGTIVGFGPFGYHLALMGIIQICEQIKNLRAMQQAQQTNK"
     gene            12994..14223
                     /locus_tag="RJ259_000768"
     CDS             12994..14223
                     /locus_tag="RJ259_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HDV7366495.1"
                     /translation="MFIVAARYLFLCDEDFTILENQAFVFEDKILELGELDNLKKKYP
                     KAKIIKTPKNSVILPAFINPHTHLEFSANSTTLHFGEFLIWLKSVINSRSILNAQAKE
                     ELILQSIKKMQKSGIGTIGEISSFGSDLDPCLKASHKGMRIVFFNEILGTNENQVEDK
                     KQEFLKRFENSLKFKNDFFIPAISIHSPYSTHPSLAHFALDLAKKQNLLASTHFLESK
                     AENIWLRESKGGFKKWLENFTLHPKPLYTPKDFVKLFKGVRTLFTHCVYLKEYEWLDK
                     NLHSITHCAFSNRLLSQKSLDLKTALKSGLNIHLGTDGLSSNISLSLLDEMRANLLIH
                     KNFDLLELASKLLQMVTLYPARALNLNLGELKKGKIADFNVFELGECDKKQAPLQFIL
                     NAKEVDKLFIKGKECKF"
     gene            14211..15107
                     /gene="sppA"
                     /locus_tag="RJ259_000769"
     CDS             14211..15107
                     /gene="sppA"
                     /locus_tag="RJ259_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HDV7366496.1"
                     /translation="MQILKSFFKALGCGIKFINTYFKTFVLLLIVIWILIPSANSSSN
                     LANLERIDLKGEIFDSSAVLEKIINAKNDSNIKGVLFVIDSPGGAFAPSMELALAIKD
                     LKIKKPVLVYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLSGLANKLGI
                     KEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQSYDLFTGFVAKERALDLNKKDQWA
                     NARVFLAAKAKELGLIDELSNYENAKKELEKLANVSNPVWKEEDKIDKFLNRLEGQTS
                     SLISKSLIEIAYKTNSSFINAR"
     gene            15186..16217
                     /locus_tag="RJ259_000770"
     CDS             15186..16217
                     /locus_tag="RJ259_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HDV7366497.1"
                     /translation="MKKNIVFFEVKGGSDKGEDGYRKDTMPMVNALKAKGWNAEVIFF
                     EVGKKDEIYKYVKENFDGYVSRINPGNLKEENEYFDMLRKLCADKLVGMPHPDAMIGY
                     GAKDALTKLADTDLVPSDTYAYYDIKTFKENFPKSLAKGERVLKQNRGSTGEGIWRVS
                     VEGNVSGDSLPLNTKIKCTEAKDNHVEHRELGEFMDFCEQYIIGDNGMLVDMTFLPRI
                     KEGEIRLLMLYNTPVNVVHKKPAEDADAFSATLFSGAKYRYDKPEDWKTLVDMFLGEL
                     PKVREKLGNYDLPLIWTADFILDTDEKGNDKYVLGEINCSCVGFTSHLELADEVASNI
                     INIVSKTKA"
     gene            complement(16459..16809)
                     /locus_tag="RJ259_000771"
     CDS             complement(16459..16809)
                     /locus_tag="RJ259_000771"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366498.1"
                     /translation="MSYLIQNIKTTNDLKEKLYTVSKKWLLEHILYKDVKVEQYRRSS
                     LTSEDDGEVSFEEVKEEKDDENTVYLYTCECVEQMHDVPFGIHQKIQLKGVKFKCKKC
                     KEAIQFYKKYSENF"
     gene            complement(16785..17081)
                     /locus_tag="RJ259_000772"
     CDS             complement(16785..17081)
                     /locus_tag="RJ259_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HDV7366499.1"
                     /translation="MLLDKLIPTWNEKYSIHDTMIDIQHQKLCELASKVESAVYKFVK
                     REELKEILTELFNYMKEHFSNEEDYMQEIHYPYLNEHKIMHKISFVICLILYKT"
BASE COUNT         5409 a         2696 c         2600 g         6412 t
ORIGIN      
        1 ttagttaact agaatttaag cattgtaaat tacattacca atatcaaagg ataaacaatg
       61 gatagaaaga aaattccctt gttggtgctg tgtattttaa ttgcaactgt gttttggcct
      121 atacctactc cttgtaggtt tggaagataa ttcttggcat tttcttgggc tttttattgc
      181 tgtgattatg gcagtgattt tacaagtaat gcctttgggg cctgtttgta tgatagctat
      241 tgccatagta gctcttagtg gcattaccac tacccaattg aaaatctaag taaaatttac
      301 accaaagcta cttcaaaaac ttctacgcaa caacttattg atgagactaa aatttccttt
      361 aaatacttca gtacttgatt ttttatatca aaagagtata agatgaaaag gtaaatactg
      421 ctatatcaaa tttaaaatct aaaacgggta taaaagacgc tttaagtggt ttttcaaatt
      481 ctcttatttg gcttatagtg atttctatta ttgtggctcg tggagttatt aaaacaggac
      541 ttggagagca tttggcttat cattttatca gtattcttgg taaaaaaact taggtattgc
      601 ttattctata gctttttgtg aaactatttt agctccagtt actccttcaa atactgcaag
      661 agcaggggct atcataaatc ctatagttca agttattgca agaagtttta aatccactcc
      721 tgaagatgga acacaaaata aaataggcac ttatctttct ttggtaaatt atcaagagcc
      781 aatcctattt catcagctat gtttattaca gctacagctc caaatccttt ggtggttgat
      841 cttatagcac aagctacaaa tttagaagtg catttaactt gggggtaata ggctttaggg
      901 atgtttttac ctggtatagc tgctatgctt tcgatgcctt tgatgcttta ttttctctct
      961 ccgctagaaa ttaaatccac gcctaatgct tctacttttg ctaaagataa attaaaagaa
     1021 cttgtaaaaa tgaaaaatag tgaaaaaatc atgctcagtg tttttgtctc gcttttactt
     1081 ttatgggctg gagctttggg cttgtttttt tggaatttct cttgatgcga ctagtgtggc
     1141 tttgcttggg ttgtctttgg tgttgattag tggagtttta acttttgggg aagttttggc
     1201 tgaaaaagct gcttggaata ctttagtatg gttttcagct cttgtaatga tggcaacttt
     1261 acttggcaaa cttggtgtta cacagttttt agctgaagct taaggtgaat ttgcttctgc
     1321 tatgggactt ggggaaattt ctattatgat atttttaagc cttgcttttt ttatatacac
     1381 actatttctt tgcttctact acagctcata tatcagcaat gttttttgtt ttttatagtg
     1441 cagcttgcct taggagcacc accacttttt tatgctttta ttatgatagc ttcaggtaat
     1501 gttatgatgg cattaactca ctatgcaata ggaacagctc ctgttatttt tggaacaggc
     1561 tgtgtaactc ttaaaaaatg gtggagtata ggttttgtga tttccatagt tgatatagta
     1621 gtgatgatag ctgttgagct tttttggtgg aaaattttag gattttatta ataatttcta
     1681 ggaattaatt cctagaaatt attctataaa accgcttgct atgactttat catgatcata
     1741 aaagactgcc atttgtccgc tagcaagtcc ataaacagga tcttttagag tgatttttgc
     1801 gcttttatct tcataaattt ctaccttaca aggtgtagat tttgaacgat agcggatttt
     1861 tacttcgcaa acaagctctt tagcgtctat aaaaagattg atatttttta ggttaaattc
     1921 actgatttta agttcttctt tggttcctac gatgatttgg ttttgcttag gattgatttt
     1981 taaaacaaaa tgtggttcat gtgccccacg cacttcaaag ccccttcttt tgcctatggt
     2041 atagtgcata tagccctcat gtttgcctac cacttttccg ctactatcta atacttctcc
     2101 aggaattttt gtatccataa actgatctaa aacttgcaca taagtatctt caacaaagca
     2161 aatttcagaa ctttcctttt gggtggcaaa agattttaaa acctctatag tggaagcaaa
     2221 ttttttcaca tcttcttttt tcatttcgcc tagcggaaaa ataagatatt ttaaagcttc
     2281 tttatctgcg ctagctaaaa aatagctttg atccttgctt tcatctactg cggtttttat
     2341 taagttgttt tcaagtcttg cataatgccc tgtggcaagt ttttcacaac ctaaactttt
     2401 agcaaattct aaaagttttc caagtttgat aaaacggtta cataaagcgc aaggatttgg
     2461 tgttttaccc tctttataag tatccacaaa aggcatgtaa actttgtttt taaaatcttc
     2521 ttgtaagtct aaaatatgat aaggaatttg caaaaagttt gcaacttttt ctactttttt
     2581 gatattttct tcgtgataat ttggtttgcc atgaagtttc atataacaac ctataacttc
     2641 atgacctaaa tttttaagtt tataagcagt gactgtacta tcaactccac cgctcatagc
     2701 gactagaatt ttcattaaat ttcctttaaa gtattaatta taaaatccaa gtcgtcagtg
     2761 attttatact ttaactcatc tcctttagaa atcacttcaa gtttgagtaa agaatttctg
     2821 acgaactcat caaaacctcg ccaaaattca ctcccaaaca aaataatagg aacatctttt
     2881 ttaaattcta actgttttaa tgtaagaatt tcacacaatt catcaagtgt tccaaagccg
     2941 cctgggaaga tcacaaaagc tagactcttt tcaataagag ccattttgcg tatggctaag
     3001 ctctcaaaag taatattata ttctacaaaa tcattaagtt tttgctcgtg aggtaaaaat
     3061 atattaaacc ctacagaact cattgaattt gtattatttt tttgtgaaaa agcaccttcg
     3121 ttggctgcac gcataatacc accacctcca ccacttatca cacaaaaacc attttgaaca
     3181 catttttgtg ccaaaatttt agcctgctga taataaaaat tatcttcttt aagtcttgct
     3241 gaaccaaaaa aagttacggc attttttagg tttggtatgt tagcaaattt ttctaaatct
     3301 tggcttattt tttcattcat ttttcaacct ttagttaaaa taaattccat tctagctaaa
     3361 aatttataat aagttcttta ttatataagt tttaataggt ttattttact aagattagga
     3421 atttaaagac ttttaaatcc ttaagcttta atatctatac tttttggtgt agaatttaaa
     3481 gaaaggattt tattaaattc tcctgcatca tcatcactaa atttcatacc aaaaagaagt
     3541 tctaattctt tactagtgct aaatttacct tctaatagtt tttttacaag ttcgtttctt
     3601 gtgctatcat ctttgtaagt ttctttgttt ttactttcgc cttgaatggc tttgaagggt
     3661 ttttcacttt gttgagtgat aatttcatca tcactagaaa gcaacatttt atcacccata
     3721 gccatttcgt attctttcac aaattcatcg tatctttgct taaaatctat gtatttagtt
     3781 ttaaactcat ttaagcttaa atctttactt ataagtgcgt caaattcttt ataaaattca
     3841 tcggcttttt tgatgatgtc gtagcccaaa tgaaacatct tagaataaga aacaaaaaaa
     3901 cctaacatca ttttctccgt agttgggtcc cattttgtat aagcaggatt aaaatctttt
     3961 aaaggggatt tttctatttt attggggtct tttaaagcat ttgacttcat aaagttgtta
     4021 aattcttgca tatctttttt gctaatactt tcatcaagtc cgaatatttt aggattatac
     4081 tcaaattttt ttccacgata aggcaaagca ccttctcctg ttataacggc tactccgtgt
     4141 ttgttgattt taaaatcaat atttttatct tgtttaaaat ttgaagtgtt ataatcatag
     4201 tttaaatttg agtttagact atttatcatt agtttttcct ctttacttga tagaataccc
     4261 accaagatat ctttctaaaa agtctttata gtttgaactg atttccttaa ctactctgta
     4321 attattcaaa gacaggactt gattttactc tataccaaga acctgattgt tcgttgatta
     4381 cagccactcc ataagaaaaa tacacaaatc ttttccctaa attagaaata ccaatatttc
     4441 ttttcacagt atatccaaga aagttacgat aagggtcatc gcccactata ctcatagttt
     4501 cccaaagtct tttttgattg atataggaat gcttaccatt aaccaaacaa tttgtagttt
     4561 ctataccgca cattccacca aatcgaacaa gtccttctct attccaataa tattgatctc
     4621 cgttactatc ttgaaataaa gttaattcca aattccaatc aggtttggca aaggctataa
     4681 cttcattatc actaagtcgt tttaaatagg ttatataccc acccttcact tctttcatct
     4741 cttcaaggct gagttctttg acacccgggc ttgtatcgct taaggcacct tttgtgagtt
     4801 tagctaaaaa atcctcagca aaacagaact agtcagtaaa gaagttaaag ctaataaagc
     4861 aaaaatcttt ttcattgaaa atcctttcat aaattctttt tgtaagttct ttaaaactac
     4921 tatcgactta ttctagcaaa agtttaatct tgctttgaaa gttaagtgaa ttttctttaa
     4981 atacttaaaa ttttattctc ggtttgtttg cttttgtaac aaattttcat ttttatctta
     5041 aattatatta agcaagtaaa aatatttaaa gattttaaaa tattttatct tagaataata
     5101 aacttttcaa tatcaaggat taaattttaa aattaacttg agctgattat ttaaaatgta
     5161 aggattgaca atgaaaaaaa ttttcttaac atttatggtt ttagttaatt gtgtttttgc
     5221 tagtgatgag ctaaatatag acagtttatt taaaaagcaa ataggcttaa gaagcattat
     5281 aagcttttct ttacttagca caggaaatgc aaactcgtat tctctttatc ctaatataac
     5341 aataggcgga gatcctacaa tttggaatga tacaaagcag gtgtttttaa ctcaaacttt
     5401 catttatacc ctaacaccta agtttgacat acttatttca ggggggcgga agttatgcaa
     5461 gacaagaata tacaaatttt ttcacaaatg catattccca taaagatcgc ataggatttg
     5521 ataatctatg gctaggtttt atttatacag gcgatagtat tgcagattta attccacaaa
     5581 ttacctttca aactgcagtt gttcaaagag aaaaagcaat caatcaaacc aaaaactttt
     5641 atctaaaatc acaaagctta caagctagtt taaggggata tagcgatcct gtagtttata
     5701 gtatttatac agggtttggt tataatcaat caagaaaatt taaaaccctt aaaatagagt
     5761 atggaaatag tatttatgtg ggtggggatt tatctattat tctaagtcct aaaattactt
     5821 tagatttagg agcagagcaa agatttcaaa tgaaacaaaa aatcaatggc tatcaaaatt
     5881 ctgaagtgcg ttctattcca actttaagtt taggttctac ttatagcatt aattcagata
     5941 ccgcagtttc tgttaatgct agttttggag gaagctctgc ttctcctgat agcatatttg
     6001 ggataagctt atggaaaaaa ttctaaaaat tttattattt ttacccattc ttgctttgag
     6061 tacaaaagcc gaatgggtag ttaagtctta tcaagaaatt aaaaacgaaa gagtaataag
     6121 acaaacttat gagcaatctt gtggtgcttc atctttagca actttactta atatacttga
     6181 tgatcaaaaa aagtttgatg aacttgaact tttaaagatt atgagcggac aagaacttta
     6241 tacggatatg gtaagctttg tagatttaaa cgatgcagtt aaaaaactgg gctttcaaag
     6301 caattcatat caaatcaata gagaaaactt ggataaactt gtaaatattc caatgcttgt
     6361 aaaaattgaa gatgatccac gctttccaca ttttgttata attatcaatc ataaaggtaa
     6421 ttatttacaa gtgcttgatc caagccatgg agaatatata agttctaaaa gtcaattttt
     6481 tagtatttgg gatagatata ataaaggtgg ttatgcttta attgttgctc ctaaaaaaga
     6541 gctaaaacct tttaagttaa acactccaaa atctttacat tttgatttca gcccttttag
     6601 tttgttttag ttttaattcg tttatattta ttattcttaa tttgtaggct aaaacttttt
     6661 atcttagttg ttctaatctt tcttttttag aaccaatttc tgtaatttga acgccgaagt
     6721 taccatcgac aattactacc tcgccataag caattctttt atccccaatt aaaatttcaa
     6781 gcggatcgtt tgcaagttga ttaagctcca caactgaacc tatatccata gttaaaacat
     6841 cttttaaaag cattttttta ttgcctatac gcacacgaac aggcaaacgc acatccatga
     6901 taagattgat atttttaagc tcttcgctaa gcattatcgc tttttcttca gtattgtgat
     6961 tagaatcagt gcttgtattt cctgtttcag caggtttccc gcttaggatg ttatggagtg
     7021 tttgatccat ggctaaagaa acttgttctt ctaaatcgcc tatttttaca tcatataaaa
     7081 ataatttttt aaaatcttta aaatctacgc tttcaggcac aaattcacaa gattctatgc
     7141 taaaatccat ttttggaatg tctttttggg ctcctaaggt tgtagaaaat gctgaaatga
     7201 tattttggat ggcttcttta gctgcatcca tttcatcagg acctagttta tcgtttttgg
     7261 tgatctcttc ttcacccatc atccattcac caatagcact cattaaaata gcaccagcta
     7321 aaattcctat ttttccacca tttgctatat taaatatagc atacactaaa ggtgctttta
     7381 aagtatcgct tgtattgaca tcaaattctt tatattcgct aaattcagca ctttttcctg
     7441 ttaaaccttc aatggtgctg atgcattcat ttgtaaacat ttttaaaaaa tcattgatca
     7501 tatttcttca tcctcctctt caggctcatc ataaacacta gctttagctt tacgctcttc
     7561 ttcgtatttt tccaaaattt ctttgatttc atctttatct gtgcgtataa gttctaaaat
     7621 tttaatagat tttctaaaac gatgcaatcc aatttgtgct aagaaaacat cttttttatc
     7681 gatgcttact atagctttat catctgcttc tctatcaagt cttaagatat cgccttgttt
     7741 aagttctaaa aattcatgaa cattaattaa ggtttttcct aaaattgcct catataccac
     7801 ttcagcacga ccgattaaag ttttaagttc tttgttgcgt gattttttgg ctgaggtttc
     7861 acccatcata atatcacggt ttgctaaacg gcttaatata ctttctaaat gtactacagg
     7921 atagcagata tttaccattc cgcttgaatt tcctatgatg atttccatta ctaccatgat
     7981 aacaatctca ttttgagata cgatttgtac aacatttgga cttgattctt tagcttctat
     8041 actaggataa atttcagtta cggtagccca gctttcttta agtctttgca taatgatacg
     8101 caaaatagaa tcaagcaaat taagctcaat atccgtaagc tcacgcgaag cttcatagct
     8161 atcaccttgt ccgcccaaaa gtctatctat cataggaaaa gctatgcttg gattgatttc
     8221 taaaacacag tttccatcta aaggtttgat agaaaaaacg ttaaaacttg ttgggcttgg
     8281 caaagacatt aaaaactctc cataagtcat ctgatcgact gaatgaagtt tagtttcaac
     8341 aatacttctc atcatcgatg aaatttgaga ggctaaattt cttgctaatt tatcatgtat
     8401 gcctttaatc gtcctaagtt gttcttttga aactctgttt ggacgcttaa aatcatatac
     8461 aacgatattt ctttcatctt tttcatcttt tgaatttgag gctatgggtg tgtcggtgtt
     8521 atcatcgaca acttcaagta gagcatcaat ttcttcttgg gagagtatct cagccattac
     8581 actagccttt ctctaagttt tttaagaagt tttttgtgaa tttgtgaaat tctgctttca
     8641 ctgatttgta aaatttcact gatttctttt aggcttaatt cttcataata ataaagctga
     8701 ataattaact gatcgcgctc tttaagatca tctagcactt cgtgaatttt ttctaaaagt
     8761 tcttcttttt caattttttc taaagtattg tcttcattat aaagttcgat ttgctcatca
     8821 atgggcaggg tatagctaat agcatgagct gttcttactt ctttgatttt ttctacatct
     8881 aaatcaagtt ttttggctag atactcatca tcaggttcgc attcatgttc taaaaaatat
     8941 tcatccatga ttgcatcaat atctttaata attttacgat tatttcgact cattacatca
     9001 agacttctaa gataatcaag catagagccg ttaactcttt ttcttgcaaa accccagaag
     9061 ttatcatttt gttctttatc gtaacggcgt gaaagcttta tcatttcttc aacgcctatg
     9121 ctaataagat cattaacatc tatacttgaa ggcaagcgtt cttttagtct aaaagccata
     9181 gcacgcagag ctggcatgta agaaagcaca agctcatctt gctctttctt tagcatttgt
     9241 gcataagctt taggcggctc ttttagcatt tcttcgtctt tctttgaatt catttttctt
     9301 tagctcttct ctttcttcat tgagcttttc taaaattata tccattttct tttcacgaat
     9361 aactaaatcg ttgataatat tattgctagt tttttcataa tcgtgtttat taaagattct
     9421 gccactaatt ttctttacat ctataaaatt cataatagca atatgaacaa aaacataaaa
     9481 cataaaagta ataaaacaag taaaaatcag tatatcaaag gcttcatcta tactaataat
     9541 gctaaatgca agtcctataa aaaatccaca aacagtgaaa aatgctacgt aattttctgg
     9601 cctcataatc tcttctcttt attgctaaaa tctttcaata atttttctaa aaaaacttga
     9661 aaaactacga tttgaaacat tatcaagcac tttccgttcc aatctatata aaagcttgga
     9721 agctagggct ttaatctcat cacttgaggc tgtgttttca tcgctaaata aagttctttt
     9781 tttaatacta ccacttacat ctttagaagc gcttaaatga cctaagaatt ctaaatttaa
     9841 aggattttta atgtttgcat ctgcaacttt tttaatattt tcaaaaactt ttaaagcttc
     9901 attttcattt tttacaacat taaagagcat tagtaaattt tcttttgtct tagaagttgt
     9961 ttttatggtt gcatacgcat cagtgattgc tgcaggatca ggaacagtta ctactataac
    10021 ttcatcagcc atttctaaaa aatttaaaat atttccacca atacccgcgc ctgtgtcgat
    10081 aataagaaaa tcaagttcat ctaaaatact tgcttgattt aaaaatctct cgtaaatatt
    10141 tttatcatta tattttaaaa tctcatctcc actttcgcct gggatgagcc ataaatttgg
    10201 cttaacttct attaaaatgt cttccaagga gcattctccg cgtaaaacat gcaagagatt
    10261 tttttgtatg cgtacattta aaatgacatc caaatttgcc aagccaatat cagcatcaaa
    10321 aagcccaact ttatagccat tatttgctaa aacattggct agattcgcgc taatcgtact
    10381 ttttccaacg ccaccttttc cacttgtaat agctataaaa tgagtgtttt gggatttttt
    10441 ggttccattt tgactcatga gattgcgaag tttatttgct tggttattca ttattttttc
    10501 ctttgttaaa cccttctaaa atacaatgaa ctagaaaatc actattggct acttctaaat
    10561 catctggcac ttcttgtcct atagagaaaa agcttagagg aatatttgtt tcataaacaa
    10621 gagagaagat atttccaaaa acctttgttt catcaaattt agtaataatc aaagtatcaa
    10681 tatttaagaa tgaaaaattt ttataaattt ccattaaatc ttcatgtttg gtgtttgcag
    10741 aaaccactaa atttacatca atttctgcat ttgagtgcat taaaaattct ttagttttag
    10801 caagtttgct ttgatcgtat tgtgaatttc ctatagtatc aactaaaatt acttcgcaat
    10861 tatttaagct ttttatcgct tcatctaaat cctttggttc tatgctatca ataataggaa
    10921 gtttcatcat ttttgcatac tgaaaaagtt gctcaactgc accgattcta taagtatcaa
    10981 gcgtaataat acctgtttta taacgcttat ctccataagc atagcgaaaa gctaacttag
    11041 ctaaggttgt tgtttttccg actcctgttg ggcctactag catcatgatt ttttgttttt
    11101 ttatatcgct ttcaacacga caaggcaaga tatttcttaa aagtgagtga aaatatcttt
    11161 gaaccgcatc tttgttggtt ttcatagcag ctggcatatt ttctatagtt gctttcataa
    11221 tcgcttctag atgattttca agcattccac tttctttggc ttgtttataa atacttgcaa
    11281 attcaggagg tatcataaga ttttttctag cttcagcttt atcgtcccac atcatatctg
    11341 caagaagatc tattttatca ttaagcttgt tgatttgttt ttcaaattgc ttttcaaaat
    11401 tttctatttt tttattataa tttggattag gggtgtaatt ttctaaaggt gtgtttgtga
    11461 ctttagaaat ttcattgcta acttcactta gtttttcttt gaaatcatca aagcctagag
    11521 tcttattttg atgagggttg attttgtttt gtggaaaatc ttgataggtt tttttagcta
    11581 agtcattgtt ttttacagtg tttaaatttg tatttaagcg agtgtttgag aaatccaaga
    11641 ctacatcttc atcttcttga gggatttgag atctaatttt ttcttctgca agagaggtag
    11701 aggatggttt tggcgagctt ttttttgcag gtaaagattt tccttgtttt tttaagtgtt
    11761 cttcatagtc gctttcttct atggctacca taacctcata aagcgcactg cgatttaagg
    11821 ttttaggacg aatttgttta tttgttataa ttaaagcttt atctccgtaa tcttctttta
    11881 ctttgggtat aatttgttct gtatcttcaa cggtaaaagt atgtataagt tgtcccattt
    11941 atattcctta tatcatgcct aaaggcaaaa ttacactcac tctttcttta gcccctttat
    12001 gaggcacctc acaccactta tcacgcttga ctttttgtga aaagtataaa agatctaaat
    12061 caagcgttct aggagcgttt ttgaaagttc tcttgcgttt aaattttact tcatagtaaa
    12121 gtaaaacttt caaaagtgct cgtgcatgca aattagtttg tatcaacata acagcattgg
    12181 taaaatcttt ttgctcttta aaaccaaagg cttcatttat caacatagga gatgtggata
    12241 aaattttaaa tcttttatca tccatcatta ctcgaaaaag catatcaaat cttttttttt
    12301 cgggttctat attgcttcct aagcctataa gagctaaata tttaaaagat cgtatatttt
    12361 gactaaaaaa aggaaaaaaa cgactttttt caaagtgttt tactccttga atttttagca
    12421 ttattattta ttcgtttgtt gtgcttgttg cattgcgcgc aaatttttta tttgttcgca
    12481 aatttgaatt atacccatta aagccaagtg atagccaaaa ggaccaaaac caacaatagt
    12541 tccagaacat acaggcgcta taagactttt ttgacgaaat tcttctctgc gataaacatt
    12601 gctaatatgt acttcaattg taggcaaagc tactgctgca atagcatcgc gaatagctac
    12661 tgaagtatga gtatagcctg ctgcattgat aataattcca tcaactgttc caaggcattc
    12721 ttgaatttta tctacgattt caccttcaaa attactttgg aaaaagtcaa gttctacatt
    12781 gttttgcgat gctgcaagtt tcatttgctc atgaatttct tccattttca tagcaccata
    12841 aattcccact tctcttacgc caagcatatt aacatttggg ccttggataa tcattatttt
    12901 catggattta accttaaaaa tttattttta accttttatt ataacatttt aaaaataaat
    12961 ttttgctaca atgtaatttt tgaaaggaaa atcgtgttta tagttgctgc aagatatctt
    13021 tttttatgcg atgaagattt tacaatacta gaaaatcaag cctttgtttt tgaagataaa
    13081 attttagaat tgggtgaatt ggataattta aaaaaaaaat atcctaaggc taaaatcatc
    13141 aaaacaccta aaaattcggt tattttacct gcttttataa atcctcacac acatttagaa
    13201 tttagtgcaa attcaacaac tttacatttt ggagaatttt taatttggct taaaagtgtt
    13261 ataaattctc gttccatatt aaatgcacag gccaaagaag aattaatact tcaaagcatt
    13321 aaaaaaatgc aaaaaagtgg tataggcact ataggtgaaa tttcaagttt tgggagtgat
    13381 ttagatcctt gcttaaaggc tagtcacaag ggtatgcgta tagtattttt taatgaaatt
    13441 ttgggtacaa atgaaaatca agttgaagat aaaaaacaag aatttttaaa aagatttgaa
    13501 aattctttga aatttaaaaa tgattttttt atcccggcaa tttcgattca ttctccttat
    13561 tcaactcatc ctagtttggc tcattttgct cttgatttag ctaaaaagca aaatttacta
    13621 gctagtacgc attttttaga aagtaaggct gaaaatatct ggcttagaga gtctaaaggg
    13681 ggttttaaaa aatggcttga aaatttcaca cttcatccta agcctcttta tacaccaaag
    13741 gattttgtta aactttttaa aggagtaagg actcttttta cgcattgtgt ttatctaaaa
    13801 gaatatgaat ggttagataa aaatttacat tctattacac attgtgcatt ttcaaatcgc
    13861 cttttaagtc aaaaaagctt agatttaaaa acggctttaa aaagtggatt aaatatccat
    13921 ttaggaaccg atggacttag ctcaaatatt tcattgtctt tacttgatga aatgcgcgcg
    13981 aatttgctta tacataagaa ttttgattta ttagagttag cctctaagct tttgcaaatg
    14041 gtaacacttt atcctgcaag ggctttaaat ttaaatttag gagagcttaa aaaaggtaaa
    14101 attgctgatt ttaacgtatt tgagctagga gaatgtgata aaaagcaagc tcctttgcag
    14161 tttattttaa atgctaagga agtggataaa ttatttataa aaggaaaaga atgcaaattt
    14221 taaaatcatt ttttaaggct ttaggatgcg gtataaaatt tatcaatact tattttaaaa
    14281 cctttgtttt attgttgatt gttatatgga ttttaatacc tagtgcaaat tcaagctcta
    14341 atcttgcaaa tttagaacgc attgatttaa agggtgaaat ttttgacagc tctgcggttt
    14401 tggaaaaaat tatcaatgct aaaaatgata gcaatatcaa aggagtgctt tttgttatag
    14461 actctcctgg tggagctttt gctcctagca tggaactagc tctagctata aaggatttaa
    14521 aaattaaaaa gcctgtgctt gtttatgcaa gcggaactat ggcaagtgga agttatttag
    14581 caggagttgg agcaaataaa attttagcca atccggcaag ttttataggc tctatcggtg
    14641 tgattatgca aggagctgat ttaagcggat tggctaataa actcggtatt aaagaacaaa
    14701 ctattcaagc gggtgaattt aaaagtgctg gaacttttgc aagagcttgg aatgagaatg
    14761 aaagaaattt tttacagggt ttaattgatc aaagttatga tctttttaca ggttttgttg
    14821 ccaaggaaag agcattagat cttaacaaaa aagatcaatg ggcaaatgca agagtgtttt
    14881 tagctgccaa ggctaaggag cttggtctta tagatgagct tagtaattat gaaaatgcta
    14941 aaaaggagct tgaaaaactt gctaatgttt caaatcctgt ttggaaagaa gaagataaga
    15001 ttgataaatt tcttaaccgc ctagaaggac aaacatcaag cttgataagt aaaagcttaa
    15061 tcgaaatcgc ttataaaact aatagcagtt ttataaacgc tagataaaat atataaatat
    15121 ttttatttaa tttttgtaat atttttatgc aataattatt tatatcttag ataaggagta
    15181 aaataatgaa aaaaaatatt gtttttttcg aagttaaagg tgggagtgat aaaggtgaag
    15241 atggctatag aaaagatacc atgcctatgg taaatgcctt aaaagctaag ggttggaatg
    15301 ctgaggtgat tttttttgaa gtgggtaaaa aagatgaaat ttacaaatat gtgaaagaaa
    15361 attttgatgg ttatgtttct cgcatcaatc ctggcaatct taaagaagaa aatgagtatt
    15421 ttgatatgtt aagaaaactt tgtgccgata agcttgtagg tatgcctcat cctgatgcta
    15481 tgataggtta tggtgctaaa gatgcactta caaaattagc agatactgat cttgttccaa
    15541 gcgatactta tgcttactat gatattaaga cttttaaaga aaattttcca aaaagtttgg
    15601 ctaaaggtga aagggtttta aaacaaaatc gtggctctac aggagaggga atttggcgtg
    15661 tgagtgtaga gggtaatgtt agtggagata gtttgccttt aaacacaaaa atcaaatgta
    15721 cagaagctaa ggataatcat gtagaacata gagagcttgg ggaatttatg gatttttgcg
    15781 agcaatatat cataggtgat aatggtatgc ttgtggatat gactttttta ccgcgcatta
    15841 aagaaggtga aatcagactt ttaatgcttt ataacacccc tgtaaatgta gtgcataaaa
    15901 aaccagccga agatgctgat gctttttctg ctacgctttt tagtggggca aaatatcgct
    15961 atgataagcc agaagattgg aaaactttgg tggatatgtt tttaggcgag cttcctaagg
    16021 taagggaaaa attaggcaat tacgacttac cattgatttg gacggctgat tttattttag
    16081 atactgatga aaagggcaat gataaatatg ttttaggcga gattaattgt tcttgtgtag
    16141 gttttacttc tcatttagaa cttgctgatg aagtagcttc aaatattatt aatattgtaa
    16201 gtaaaactaa ggcttagtct ttaagcttaa tgtccatttt attattgtaa aatggacatt
    16261 ctttttctat tgtttttaag tttgagctat attctatcga gaaaaaattt tcacaaaatg
    16321 agcattttgt atctttggtt agtataggat aggaatagtc aaatttatcc aaaataaaat
    16381 attttatttt tttatcctta aatttccttc tttgtctaac ttatacttta tttattattt
    16441 taacgcataa atagttaatt agaaattttc tgaatatttt ttataaaact gtatggcttc
    16501 tttgcatttt ttacatttaa attttacgcc cttaagttga attttttgat gaattccaaa
    16561 tggtacatca tgcatttgtt ctacgcattc gcatgtataa agataaactg tattttcatc
    16621 atctttttct tctttgactt cttcaaagct tacttcccca tcatcttcag aagttaaaga
    16681 agatcttctg tattgttcaa ctttcacatc tttatagagt atatgttcta aaagccattt
    16741 tttagaaact gtgtaaagct tctcttttaa atcattagtg gtttttatgt tttgtataag
    16801 ataagacata tcacgaatga tattttatgc atgattttgt gttcatttaa ataaggataa
    16861 tgaatttctt gcatataatc ttcttcatta ctaaaatgtt ctttcatata gttaaaaagt
    16921 tctgttaaaa tttctttgag ttcttctcgt tttacaaatt tataaacagc actttcaacc
    16981 ttgcttgcaa gttcacaaag tttttggtgt tgaatgtcaa tcattgtgtc atgaatactg
    17041 tatttttcat tccaagttgg aattagttta tctaaaagca ccttctttaa tttttatatt
    17101 taaaattaat ttaatat
//
LOCUS       DAPIWJ010000030        16989 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.030, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000030 DAPIWJ010000000
VERSION     DAPIWJ010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16989)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16989)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16989
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.030"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..661
                     /locus_tag="RJ259_000773"
     CDS             <1..661
                     /locus_tag="RJ259_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HDV7366500.1"
                     /translation="TLWPILQTLQEKKYIKCDLKNKSYYLDFKIIELGCNIKNENNIF
                     EIIKKHMKNIRNLTNQTCQMGILKDGNVLYLEKIDANNTVQLKSFIGTSYPAYATSLG
                     KALLSNKNKKELEKLYPKNFDKITENTLNNINELYQQIKQIKKEKIAIEIGEMNPQIE
                     CMAIGIEHKNKIIAAISISYLIYCSNKAFREKNKKILLEEKNKIEKVLKIYFNDLDTL
                     Y"
     gene            complement(692..5245)
                     /gene="rpoC"
                     /locus_tag="RJ259_000774"
     CDS             complement(692..5245)
                     /gene="rpoC"
                     /locus_tag="RJ259_000774"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HDV7366501.1"
                     /translation="MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPET
                     INYRTLKPERDGLFCAKIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSR
                     MGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNEST
                     KKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMGAT
                     NSEAKKKTIIKRLKVVENFLNSNLNANTDSDEAVPNRPEWMMITNLPVLPPDLRPLVA
                     LDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR
                     ANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK
                     KMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPT
                     LHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLS
                     SMNILLPASGKSVTVPSQDMVLGIYYLSLEKAGAKGSHKICTGIDEVMMALESKCLDI
                     HASIQTMVDGRKITTTAGRLIVKSILPDFVPENSWNKVLKKKDIAALVDYVYKQGGLE
                     ITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLI
                     TSGERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAA
                     MRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKL
                     IDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGRVLAEDVIDPITNSVLF
                     AEGTLMDEEKAKILGESGIKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPGEAVG
                     IISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKEGKNI
                     VANRRNAAVLLVEPKIKTPFKGVINIENIHEDVIVSIKDKKQEVKYILRKYDLAKPNE
                     LAGVSGSIDGKLYLPYQSGMQVEENESIVEVIKEGWNVPNRIPFASEILVEDGEPVVQ
                     NIKAGEKGTLKFYILKGDGLDRVKNVKKGDIVKEKGFFVVIADENDREAKRHYIPRES
                     KIEFNDSEKIDDANTIIASAPKKERKVIAEWDAYNNTIIAEIDGVVSFEDIEAGYSAD
                     EQIDEATGKHSLVINEYLPSGVRPTLVIAGKGDKAVRYHLEPKTVIFVHDGDKIAQAD
                     ILAKTPKAAAKSKDITGGLPRISELFEARKPKNAAVIAEIDGVVRFDKPLRSKERIII
                     QAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISE
                     IQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTKFIEGDLVSRRKFREENERIIR
                     MGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVI
                     LGRMIPVGTGLYGEQNLKLKEQE"
     gene            complement(5238..9374)
                     /gene="rpoB"
                     /locus_tag="RJ259_000775"
     CDS             complement(5238..9374)
                     /gene="rpoB"
                     /locus_tag="RJ259_000775"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HDV7366502.1"
                     /translation="MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD
                     NGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIR
                     LTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVI
                     FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGY
                     KKQDIIKLFYPIQTIHVKKDKFLTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKK
                     AEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSF
                     DIANDLANGVDAAIINSFAQDGETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKD
                     AAKAFVNDLFFNPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKN
                     GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLI
                     NPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVH
                     ATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTAT
                     QEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASL
                     IPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQIIARDAWEAVKAKRGGVVE
                     KVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGP
                     SMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKD
                     GIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGEVKPTPEERLLR
                     AIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKEKMALEKEHH
                     DRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIK
                     AYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRK
                     LKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILESHL
                     GLVGLRLGDQIQEIFDRKQKDFLKELRAKILEICSIPRLANEKEFIKSLSDEELLNYA
                     RDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMY
                     MLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
                     MLTIKSDDVEGRFSAYKALTKGENVPAIGIPETFFVLTNELKSLALDVEIFDKDEDNE
                     "
     gene            complement(9483..9860)
                     /gene="rplL"
                     /locus_tag="RJ259_000776"
     CDS             complement(9483..9860)
                     /gene="rplL"
                     /locus_tag="RJ259_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HDV7366503.1"
                     /translation="MAISKEDVLEYISNLSVLELSELVKEFEEKFGVSAAPVMVAGGA
                     VAGGAVAAAEEKTEFDIVLTDGGAKKIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEG
                     VAKAEAEEAKKQLEEAGAKVELK"
     gene            complement(9881..10360)
                     /locus_tag="RJ259_000777"
     CDS             complement(9881..10360)
                     /locus_tag="RJ259_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HDV7366504.1"
                     /translation="MTRSEKVEIIAKLEEGFKASEAIVVCNYRGLSTKKLEELRNNAR
                     ENNVKVQIVKNTLANIALNNSGKTGLVLKDTNIYLWGEDQLSVSKVAAKFEENNDKFE
                     IKTAHIEGEVADVAKVKALAKMPSRNELLAMLLQVWNAPITNFTIGLNALKNKKESE"
     gene            complement(10512..11213)
                     /locus_tag="RJ259_000778"
     CDS             complement(10512..11213)
                     /locus_tag="RJ259_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HDV7366505.1"
                     /translation="MAKIAKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEI
                     ALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVE
                     EIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQ
                     VNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTM
                     SPSVKLETQELLDMK"
     gene            complement(11268..11693)
                     /gene="rplK"
                     /locus_tag="RJ259_000779"
     CDS             complement(11268..11693)
                     /gene="rplK"
                     /locus_tag="RJ259_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HDV7366506.1"
                     /translation="MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNE
                     RTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTR
                     AQVLEIVDKKIADLNTKDRDQAAKIIAGSARSMGVEIVD"
     gene            complement(11719..12252)
                     /gene="nusG"
                     /locus_tag="RJ259_000780"
     CDS             complement(11719..12252)
                     /gene="nusG"
                     /locus_tag="RJ259_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HDV7366507.1"
                     /translation="MSTHKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTE
                     DVIEFKNGKEKISERSLYSGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEK
                     DINLILEKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIF
                     GRSTPVEILYSQVEKII"
     gene            complement(12262..12441)
                     /gene="secE"
                     /locus_tag="RJ259_000781"
     CDS             complement(12262..12441)
                     /gene="secE"
                     /locus_tag="RJ259_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HDV7366508.1"
                     /translation="MEKLITYFKLSKAELRKVIFPLKEQVRNAYITVFVVVAVISLFL
                     ALVDWLMSSIVSAIV"
     gene            complement(12460..12535)
                     /locus_tag="RJ259_000782"
     tRNA            complement(12460..12535)
                     /locus_tag="RJ259_000782"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(12500..12502),aa:Trp,seq:cca)
     gene            complement(12548..12706)
                     /gene="rpmG"
                     /locus_tag="RJ259_000783"
     CDS             complement(12548..12706)
                     /gene="rpmG"
                     /locus_tag="RJ259_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HDV7366509.1"
                     /translation="MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTL
                     HKEVKLKS"
     gene            complement(12759..13958)
                     /gene="tuf"
                     /locus_tag="RJ259_000784"
     CDS             complement(12759..13958)
                     /gene="tuf"
                     /locus_tag="RJ259_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HDV7366510.1"
                     /translation="MAKEKFSRNKPHVNIGTIGHVDHGKTTLTAAISAVLSRRGLAEL
                     KDYDNIDNAPEEKERGITIATSHIEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDAELLELVEMEIRELLSS
                     YDFPGDDTPIISGSALKALEEAKAGQDGEWSAKIMDLMAAVDSYIPTPTRDTEKDFLM
                     PIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEA
                     GDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRP
                     QFYVRTTDVTGSIKLADGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSG
                     VVSKIIK"
     gene            complement(14027..14101)
                     /locus_tag="RJ259_000785"
     tRNA            complement(14027..14101)
                     /locus_tag="RJ259_000785"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14067..14069),aa:Thr,seq:ggt)
     gene            complement(14206..14282)
                     /locus_tag="RJ259_000786"
     tRNA            complement(14206..14282)
                     /locus_tag="RJ259_000786"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14246..14248),aa:Gly,seq:tcc)
     gene            complement(14289..14374)
                     /locus_tag="RJ259_000787"
     tRNA            complement(14289..14374)
                     /locus_tag="RJ259_000787"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14338..14340),aa:Tyr,seq:gta)
     gene            complement(14424..14499)
                     /locus_tag="RJ259_000788"
     tRNA            complement(14424..14499)
                     /locus_tag="RJ259_000788"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14464..14466),aa:Thr,seq:tgt)
     gene            complement(14591..15352)
                     /locus_tag="RJ259_000789"
     CDS             complement(14591..15352)
                     /locus_tag="RJ259_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDV7366511.1"
                     /translation="MSILKIENLQKYYGSHHALKDINLEVKAKEVVVILGPSGCGKST
                     LLRCINGLEEIASGNIYIDNEKIDKDFKEWPRMRQKVGMVFQSYELFEHLSVEENILL
                     GPMKVQKRKKDEVLKEAKIWLEKVGLLHKIHAYPRELSGGQKQRIAIVRSLCMNPELM
                     LFDEVTAALDPEIVREVLEVMLNLAKEGMTMLIVTHEMGFAKAVADKIIFMDEGKIIE
                     ENDPKSFFKNPKSERAKKFLNLFDYHNIDKNNIGL"
     gene            complement(15354..16010)
                     /locus_tag="RJ259_000790"
     CDS             complement(15354..16010)
                     /locus_tag="RJ259_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7366512.1"
                     /translation="MLELLNTDTLLRLWQGLFVTLEISFISIIITSIGGLFLGILMSF
                     KNTYIYAFCRLGLEFVRVMPLLVWLFVVYFGFPRWFGWDLSSVSAAIIVFSIWGCFEM
                     MDLVRVSLQSIPKHQYESASSLGLNTVQSFAYVIIPQAMRRLTPMSMNLLTRMIKSTT
                     FAYLIGAVELVKVGQQIIEFHNRNDFAPFIIYGLIFFIFFILCYPITLYSRKLEKKWS
                     "
     gene            complement(16003..16704)
                     /locus_tag="RJ259_000791"
     CDS             complement(16003..16704)
                     /locus_tag="RJ259_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7366513.1"
                     /translation="MDFDFILAQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYF
                     KIKILENICKLYIEFSRNTPLLIQLFFLYYALPKFNIHLEQIPPLDLICLSVEETLRP
                     SFACAIVGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAI
                     SMPSISANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILP
                     LSFILLKFEKRLLHA"
     gene            complement(16720..>16989)
                     /gene="nssR"
                     /locus_tag="RJ259_000792"
     CDS             complement(16720..>16989)
                     /gene="nssR"
                     /locus_tag="RJ259_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrosative stress-sensitive transcriptional
                     regulator NssR"
                     /protein_id="HDV7366514.1"
                     /translation="ISSLFDKIKILEKKLSQNALDLRTRLLKYLLENEKNLDTISQKQ
                     IAIDLNVRAQSLSRVLKELKISELIDTKKGRIEILNKDMIMKELW"
BASE COUNT         5420 a         3411 c         2241 g         5917 t
ORIGIN      
        1 aactctttgg cctattttac aaactcttca agaaaaaaaa tatatcaaat gtgatttaaa
       61 aaataaaagt tattatttgg attttaagat tatagaatta ggatgtaata taaaaaatga
      121 aaataatatt tttgaaataa tcaaaaagca tatgaaaaat ataagaaatt taaccaatca
      181 aacttgtcaa atgggaattt taaaagatgg aaatgtgctt tatttagaaa aaattgatgc
      241 caataataca gtacaattaa aatcttttat aggcacttcg tatcctgctt atgcaacatc
      301 tttaggcaaa gccttactat caaataaaaa taaaaaggaa ttagaaaaac tttatcctaa
      361 aaattttgat aaaattacag aaaacacctt aaataatata aatgaactct atcaacaaat
      421 caagcaaatt aaaaaagaaa aaattgccat agaaattgga gaaatgaatc ctcaaattga
      481 atgtatggct ataggcatag aacataaaaa taaaataatt gctgccatta gtatatctta
      541 tctaatttat tgctctaata aagcttttag agaaaaaaat aaaaaaatac ttctagaaga
      601 aaaaaataaa atagaaaaag ttttaaaaat ttattttaat gatttagata cactgtatta
      661 atatagcccc gaagggctat aaaatagagt tttattcttg ttctttaagt tttaaatttt
      721 gttcgccata aagccctgtt ccaacaggaa tcattctacc tagaataaca ttttctttta
      781 aatcttctaa gtagtcaaat ttacctgcta tacttgcttc agttaaaact ttggtagttt
      841 cttggaatga agccgcagaa atcacactat cacttccaat cgctgctctt gttacaccta
      901 aaagcacagg ctcggcaata gctggttctc cacccattct aatgattctt tcattttctt
      961 cacggaattt acgtcttgaa accaaatcac cttcaataaa tttcgtatgt ccactatcta
     1021 caacttttac ttgtcttagc atttgagaaa cgataacttc tatatgttta tcagaaatca
     1081 caacaccttg tccgcgataa acttgctgaa tttcagaaat caaataataa tgcaaggctt
     1141 tttcacctaa aattttaagc acatcatgac tcgaaacaac tccatctgta agtttttcac
     1201 ctgcatgaat aaactctcca tctcttactt gaatatgttt tgatttgtcg attaaatact
     1261 cagcacttgt tccatcttct gcttggataa taattctttc tttagaacgc aaaggcttat
     1321 caaaacgaac aacaccatca atttctgcaa tcacagccgc attttttggt tttcttgctt
     1381 caaaaagttc agaaattctt ggaagacctc ctgtaatatc ctttgattta gctgctgctt
     1441 ttggagtttt tgctaaaata tctgcttgag caattttatc gccatcatga acaaaaataa
     1501 cggtttttgg ttcaaggtga taacgcacag ctttatcacc ttttcctgca attaccaaag
     1561 ttggtctaac tccgctaggt aaatactcat taattactaa agaatgctta cctgtagctt
     1621 catcaatttg ctcatcggca ctataacctg cttcaatatc ctcaaagctt acaacaccat
     1681 caatttctgc aatgatagta ttattataag catcccattc tgcaatcact tttctttctt
     1741 ttttaggagc acttgcaatg atagtatttg cgtcatcgat tttttcacta tcgttaaatt
     1801 ctatcttaga ttctcttggg atatagtgtc tttttgcttc tctatcattt tcatcagcaa
     1861 tcactacaaa gaatcctttt tctttaacaa tatcaccttt tttaacattt tttactctat
     1921 ctaaaccatc gcctttaagg atgtaaaatt tgagtgttcc tttttcgcct gctttgatat
     1981 tttgaactac aggctcgcca tcttctacta aaatttcact cgcaaaagga atacgatttg
     2041 gtacattcca accctcttta atcacttcta cgatactttc attttcttct acttgcatgc
     2101 cgctttgata tggcaaataa agttttccat ctatactgcc acttacacct gctaattcat
     2161 ttggtttagc aagatcgtat tttcttaata tgtattttac ttcttgtttt ttatctttaa
     2221 tagaaacaat cacatcttca tgaatatttt ctatattaat cacaccttta aatggagttt
     2281 tgatttttgg ctccacaagt aaaaccgccg catttctacg atttgctacg atatttttac
     2341 cttctttgtt tttataagtt ttaagattat aaaatcttat aaaaccttct ttttgtgcgc
     2401 ttacttgtct atcttgtaaa tccgtacttg cagttccccc gctatggaaa gttcttagag
     2461 ttagctgcgt tcctggttca ccgatagatt gagcggaaat aattcccact gcttcgcctg
     2521 gttttactaa tttaccttca ccaagattga taccataaca ttttgcacaa attccttttt
     2581 tagctttgca ggtaatagga gtgcggatat tgacactttt tataccgctt tcgccaagaa
     2641 tttttgcttt ttcctcatcc attaaagtac cttccgcaaa aagcacagaa tttgtaatag
     2701 gatcaatcac atcctcagct aaaaccctgc ctaaaattct ttcttctaaa gtttctataa
     2761 tagaactatc tgcggtaatt tcattgattt caacaccctc atgtgttcca caatcttcaa
     2821 tggtaatttt tacattttgt gcaacatcga tgagttttct tgtcaaataa cccgcatttg
     2881 ctgttttaag agcggtatct gcaagacctt ttctagcacc gtgagttgaa ataaagtatt
     2941 caagaacatt tagcccttca cggaaatttg aaataatagg cgtttcgata atagaaccat
     3001 caggtttggt cataagtcct ctcatcgcag caagctgaga aatttgagct gcactacccc
     3061 tagcaccaga atctgccatc atataaatag agttaaaacc ttctttatct ttttctacaa
     3121 gcttcatcat ttcttttgaa agaacattgt ttgtactttt ccaaatatca atgattttat
     3181 tgtatctttc ccctgaagta atcaaaccga gattataaga attttgaatt tctcttactt
     3241 gtttttttgc ttcatcgata gctttttgtt tatcattagg aacaataata tctgcaatcg
     3301 aaattgaaat acctgcttta gttgcatatt caaaacctaa atttttaagt ctatctaaga
     3361 aacttgctgt aatctctaaa ccaccttgtt tataaacata atctacaagc gcagcaatgt
     3421 cttttttctt taagacttta ttccaactat tttcaggcac aaaatcaggc aagatggatt
     3481 taacaatcaa tcttcctgct gtagtggtaa tctttctacc atctaccata gtttgtatgc
     3541 tcgcatgaat atccaaacac ttgctttcaa gtgccatcat cacttcatca atgcctgtac
     3601 aaattttatg cgaaccttta gcacctgctt tttccaacga aagataataa attcctaaaa
     3661 ccatatcttg cgatggaacg gttacagact taccgcttgc tggtaaaaga atattcattg
     3721 atgaaagcat aagcacttta cattctgcaa tagcctcttg agaaagcggt acatgcactg
     3781 ccatttgatc cccatcaaag tctgcgttaa atgctgcaca aaccaaagga tgaagttgta
     3841 tagccttacc ttccactaaa acaggatgaa aagcttggat agaaagctta tgcaaagtag
     3901 gtgcacggtt tagcataaca ggatgtccct ttactacctc ttctaaacat tcccaaactt
     3961 cattggtttt attttctatc atttttttag cttgttttac tgtggttgca taaccttttt
     4021 cttcaagctt agctaaaaga tgtggcttaa aaagctctaa agccattttt ttaggtaaac
     4081 cgcattgatc cattctaagt tttggaccta caacaataac gctacgacct gagaaatcca
     4141 cccttttacc tagtagattt tgtctaaaac gtccttgttt ccctttgatg atttcactta
     4201 aagatttcaa tgggcgttta tttgctcctt ttacagcatt agcacgacga ccgttgtcaa
     4261 aaagcgcatc aacagcctct tgaagcattc ttttttcatt tctgataatg atttcaggtg
     4321 catcaagttc cataagtttt ttaagacgtg tatttctatt gataacacga cgatataagt
     4381 cattcacatc agaaactgca aatttcccac catctaaagc cactaaagga cgcaaatctg
     4441 gcggtaaaac tggaagattt gtaatcatca tccattcagg acgatttggt acagcttcgt
     4501 cgctatcggt attggcgttt aaatttgaat ttaagaaatt ttctacaact tttaagcgtt
     4561 taatgatagt ttttttctta gcctctgaat ttgtagcccc catttcttct ttaagctgat
     4621 ttaaaagcgc tacaagatct aaatttgcaa gtaaatcacg aacaacttct ccacccattc
     4681 ttgctttaaa gccgctattt tcatagcgtt gcattaaatt ttgatattgc tcttcgttca
     4741 aaacatcgca atattccact tttttagtac tttcattatc atagaaagca tcacctgggt
     4801 tttcaacaat ataagcttca taataaagca cgcgctcaag atctttcatc ttaacaccca
     4861 aaagcgttcc tatacggctt ggaagagaat taacatacca aatatgagcc acaggagtta
     4921 caagctcgat atgccccatt ctagaacgac gcacttttga atttgctact tcaacaccac
     4981 atttttcaca cttaacgcct ttaaaacgca tttttttgta tttaccacaa agacactcat
     5041 aatctcttat aggtccaaaa atctttgcac aaaaaagccc atctctttca ggctttaagg
     5101 ttctataatt aatagtttct ggttttttta cttctccata agaccatgat ttgatttttt
     5161 caggacttgc aagtcttagt tgaaatgctt caaaatctct aggtcttgca tcttctttaa
     5221 tttctattac tttaaattta ctcattatct tcatccttat caaaaatctc aacatctaaa
     5281 gcaagagatt taagctcatt ggttaataca aaaaatgttt caggaattcc tattgctgga
     5341 acattttcac cttttgtcaa tgctttatag gcactaaatc taccttctac atcatctgat
     5401 tttatggtta acatttctct taaagtgtga gccgctccat aagcttcaag tgcccaaact
     5461 tccatttctc caaatctttg tcccccaaag agtgctttac cacccacagg ttgttgggta
     5521 accaagctat aaggtcctgt acttcttgca tgaacttttt catcaaccaa gtgatggagt
     5581 tttagcatat acatacatcc tacatgaaca cgctctgcaa ttttttcccc cgtgcgtcca
     5641 tcataaagtt ctgttttgcc atccatatct atcttagcca ttttaaaaag cttgctaaat
     5701 tcttctatat ttacaccttc aaaaacagga gtagaaaatt taactccttt actccagtct
     5761 ctagcatagt ttaaaagctc ttcatcgctt aagcttttaa taaattcttt ttcgtttgca
     5821 agtcttggaa tagaacaaat ttcaagtatt ttcgctctta attctttaag aaaatctttt
     5881 tgctttctat caaaaatttc ttgaatttga tccccaagtc taagtccaac taaacctaaa
     5941 tgactttcta aaatttgacc tatattcata cgacttggaa cgccaagtgg attaagcgca
     6001 atatccacgc tcttaccatt tggcaaataa ggcatatcta cttcaggaac tatagttgaa
     6061 actatacctt tatttccatg acgtcctgcc attttatcac cgactttaag ctttcttttt
     6121 gtagcaatat aaactttaac aagcttaatt accccacttg gtaaaatatc atctttttct
     6181 aaaatttcaa gcttttcatc gtgttctgct tttaattttt tcttctcatt ttggaaatga
     6241 ttttttaaat catcgtattc tttttgaatc tctttagaat aagctttaat caaagttgtt
     6301 aaagtaaaac gattgatttt ttcaagttcg ctaatatctg cagtttgtcc ttttttataa
     6361 tttttatctc caattttttg atcgctattt aaagaggctt tggaaagaag agcacaaaca
     6421 cgaagcattt cttctctatc catcatcaaa agtctatcat gatgctcttt ttctaaagcc
     6481 attttttctt tatcataaga ttttattgcg cgatcatctt tttcatagcc ttttttagtg
     6541 aaaattttaa catccacaac aacaccctct aaagaagcgg ttgcataaag ggatttattc
     6601 acaacatgtc ctgctttttc tccaaaaatc gctcttaaaa gtctttcttc aggagttggt
     6661 ttaacctcac cttttggaga aaccttaccc accaaaatca tacctggttt gatatgggta
     6721 ccaatttttg caataccgct ctcatcaaga tgcgcaacat cttcttcttt tacatttgga
     6781 atatctttgg taatttcttc tataccgtct tttagttctc ttgcttcaat ttctttttca
     6841 taaatgtgca cgcttgtaaa agtatcttca cgaataattc tctcacttac aactatagca
     6901 tcctcatagt tataaccatt ccaaggcata aaagcgatta aagcattttt acctatagca
     6961 agttcgcctt gatccataga aggaccatct gcgataattt gtcctgcttt tactatatca
     7021 ccttttttaa caatagggtg ttgaatataa tttgtatttt gattggttct taaatttttc
     7081 tccatagtgt aatggtcaat aaatggacct ttatcatctt cacctaaaat gaaaatgctt
     7141 ttattatcca ctttctcaac cacaccgcca cgctttgctt taacagcttc ccaagcatca
     7201 cgcgcaataa tttgttccat acctgttcct actatcggag ctgaagcagt aagaagtggc
     7261 acagcttgac gttgcatgtt tgaacccatt agcgctctgt ttgcatcatc gtgctctaaa
     7321 aacggaatca aagaagctgc aactccaaca accatacctg agcaaagatc gattaattgc
     7381 acttcttcgc gtcttgcaag tatagtttca ccatcttgcc tagcctcaac aaattcttct
     7441 actatattgc ctttagcatc aaccttagtt gaagctggtg cgataaacaa gccttcttct
     7501 tgtgtcgctg taagataaac aacttcatta gtcactttac catttacaac ttttctatat
     7561 ggcgcttcaa caaagccaag ttcatttact tttgcataag tagaaagagt gttaatcaaa
     7621 ccaatatttt gaccttcagg tgtttcaact ggacaaattc taccataatg tgtcgcgtga
     7681 acatcacgca cttcaaaacc tgctctttct tttacaagtc caccttcacc aagcgctgac
     7741 aaacgacgct tatgagtaac ctcgcttaaa gggttggttt gatccataaa ttgcgaaagc
     7801 tgacctcctg taaaaaattc aatgatagtt gtagtaatca ttttaggatt gattaaatca
     7861 taaggcatta ctttatcaag atccgcattt aaagaagtaa atttatctct gatcgccttt
     7921 tgcatttttg caagacctaa atgaagttca ttggctaaaa gttcacctat agaacggata
     7981 cgacgatttc ctaaatgatc tctatcatca atatgtcctt taccattttt tactttaatt
     8041 aaatattttg cagttttaat aatatcttca ttagtcaaaa cagtaacata ctcaggtact
     8101 tcaagaccta atttatggtt cattttcata cgacctacct tggtaagatc gtatctttca
     8161 ggattgaaga ataaatcatt tacaaaagcc ttcgctgcat cttttaccac aggttcacct
     8221 gggcgcataa ctttgtaaat tctaatcgca gctaaatcat tttcatcatc gatattttca
     8281 ctttgtttaa gaagttttag agtttctcca tcttgggcaa aggagttaat aatcgctgca
     8341 tcaacgccat tagccaagtc atttgctata tcaaaacttt tttgctcttt aatcttagca
     8401 agcttactct catctaacaa agttaaagaa tcaaataaaa cctctccact ttctttatca
     8461 ataataggat ttgctaaata acgattaagt aaaatttcta caggatattc tatccatttt
     8521 aaaccgtctt taataagctg ttctgctttt ttctttgtaa gtctttttcc agcttgatga
     8581 acgatttttc ctttttcatc tttaatatca tattctattc tatccataaa atcatttgga
     8641 ttaaattctg ttaaaaattt atcttttttc acatgtatag tctgaatagg ataaaacaac
     8701 ttaataatat cttgtttttt ataccctaaa gctctaaaaa gcatagttac aggaactttt
     8761 ctacgcttat tgattcttac atacaaaaca tctttggcat cgtattcaaa ataaagccac
     8821 gaaccacgat caggaataat ttgtgctgta taaacaagct tatttgcaac cgttgaactt
     8881 tcttcttctt taaaaataac accagggctt ctatgtaatt gatttacaac cactctctca
     8941 accccgttaa tgataaaaga tacacgatct gtcattaaag gaatttcgcg gatataaatt
     9001 tcttgttctt taatatcttt tacgccaact ttttcccctg ttttttcatc tttttcatgc
     9061 agagtaagac ggattttcat ttttaaattt acagaataag tcaaacctct ttccatgcat
     9121 tcgcgaatgg tatattttgg cttgcctatt tcactactaa catattcaag actcaatcta
     9181 ttttgcggat catgaatagg aaaaattgat ttaaaaactt tttctatacc actttcacca
     9241 ttatcaagat ttaaaaaata atcaaaactc tttttttgta attgtagaag atttgggatt
     9301 tctatttgtt ttgaaatgtt tgagaagtct actcttaaac gatttcctaa tttattatct
     9361 aacatatcgc acatacctca tggtaaattt tgtaaattta aaaaagaaga cctaaaaatt
     9421 aggtaaaaat aaaaaaagaa gacttgcctt ggcaaatctt cttctaactt taaagcttaa
     9481 aattacttaa gttctacttt agcaccagct tcttcaagtt gttttttagc ttcctcagct
     9541 tcagctttag ccacaccctc ttttagagtt gaaggagttt gctcaactgc atcttttgct
     9601 tctttaagac caaggcctgt aagagcacga acgattttaa taacttcaat ctttttagca
     9661 ccgccatcag ttaaaacgat atcaaattca gttttttctt cagcagcagc tacagcacca
     9721 ccagctacag caccaccagc taccattaca ggagcagcag acacaccaaa tttttcttca
     9781 aattccttta caagttctga taactcaaga acacttaaat ttgaaatata ttctaataca
     9841 tcttctttag agattgccat tttttatcct tttatttaat ttattcagat tcttttttat
     9901 ttttaagcgc atttaaacct attgtgaaat tggtaattgg cgcattccaa acttgcaaaa
     9961 gcatagcaag caactcattg cgtgaaggca ttttagcaag agctttaacc ttagcaacat
    10021 ctgcaacttc gccttcaata tgagctgttt tgatttcaaa tttatcgtta ttttcttcaa
    10081 atttagcagc tacttttgaa acacttagct gatcttcgcc ccaaagataa atatttgtat
    10141 ctttaagaac tagacctgtt ttaccggaat tgttaagagc aatgttagcc aaagtatttt
    10201 taacaatttg aacttttaca ttgttttctc ttgcattatt tctaagctct tctagttttt
    10261 ttgtgctaag acctctgtaa ttacaaacta caatagcttc actagcttta aaaccttctt
    10321 caagtttagc aataatctca actttttcgc ttctagtcac attttctcct ttccgattga
    10381 gatttcaagt agagtggaaa tccaattaag cttacgcctc gactatcttc aatctaaaat
    10441 aaacatttca aaaaatcaaa aattttttca aatgtttatt ttaaaacaaa agagttgcaa
    10501 aaaagcaact cttatttcat atcaagcaat tcttgtgttt caagctttac agaagggctc
    10561 attgtcaaag ataaagccgc atttttaata tatctacctt tagctgcagc aggtttatgt
    10621 ttgttaattg cctttacaaa agtgctaaca ttatcccata attgttcttt ggaaaaactt
    10681 actttaccaa gacctgcatg gatatttcct tgcttatcaa cacggaaatt tacctgacca
    10741 ctttttgcat tattaactgc ttgagcaaca tccatagtca ctgttccagt tttaggattt
    10801 ggcattaaac cttttggccc taaaattcta ccaactttac caacaagtcc cattaaattt
    10861 ggagtagcaa tcaaaacatc aaaattcata ttaccttttt gaatttcttc tactaaatca
    10921 tcgctaccca caatatctgc accagcattt ttcgcttcat cagcttttgc gtcttttgca
    10981 attacagcaa cacgaacttt tttacccgtt ccagcaggta aaacaacaga tcctcttacc
    11041 atttgatctg catgtcttgg atcaacatta agttttaaag caatttctac agtctcatca
    11101 aatttagcag actttaaagt ctttattgta tcaattgcat cgcttaaagc atactcttta
    11161 tttgaatcaa ttttttgtga taattctttt aatctttttg ctatcttagc catttatttt
    11221 ctccgcattt taaagtgcta ccgcctttta ccttggcggt gaaaggatta atctacgatt
    11281 tcaacaccca tagaacgagc tgaacctgca ataattttag cagcttgatc tctatcttta
    11341 gtatttaaat ctgcaatttt cttatctact atttctaaaa cttgagcacg agttaactta
    11401 cccaccttat ttttaagtgg attatccgta cctttagaaa ttccagctgc ttttttgatc
    11461 aaatccgtag ctggcggttg ttttgtaata aaagtaaaac ttttatctgc ataaacagtg
    11521 ataacaacag ggatattaaa acctgccata tcttttgttc tttcattaaa agccttacaa
    11581 aactccataa tattaacacc ttgctgaccc aaagcaggac caacaggtgg tgatgggttt
    11641 gcttttgtgg cagcaatttg caatttaatt tcgcctacga cttttttagc cataacaaat
    11701 ctccttactt gatataaatt aaattatttt ctcaacttga gaatataaga tctccactgg
    11761 agttgaacgt ccaaaaatag aaacatttaa ttttaataaa ccacgaacca tatcatactc
    11821 ttctacaatt gcagtaaagt ttgcaaatgg cccttctgtg attctcacat tttccccttc
    11881 ttcaaaagaa atctttggtt taggcgctgc acgattgtga actttttcca aaatcaaatt
    11941 aatatctttt tctgttaaag gggttggctt tttggattct ccaataaaac gaccaacctt
    12001 tggaagagat tgaatgcgat gccaaagctc tgtatttaaa tcaagaagtg caaaaacgta
    12061 tcctgaatac aaacttcttt cgctaatctt ctcctttcca ttcttaaatt caataacatc
    12121 ttcagttgga acaacaattt ctttaagttg ttcttcaatt ccgttatctt ttactaaatt
    12181 ttcaatggct cttttaactg ccatttcact gccagcataa gtttgaattg cataccattt
    12241 atgagtactc atttactctc cttatacgat cgcagaaaca atagaggaca taagccaatc
    12301 cactaacgcc aaaaacaaag aaatcaccgc aacaaccaca aaaactgtaa tataggcatt
    12361 tcttacctgt tcttttaaag gaaaaattac tttccttaat tcggcttttg ataatttaaa
    12421 ataagttatt aatttttcca tttatttaaa ccttaattat ggcagggcaa gagggattcg
    12481 aacccccaac catcggattt ggaatccggc gctctaccgt tggagctatt gccctaaggg
    12541 cgcaagctta actttttagc ttaacttctt tgtgaagtgt atgttttttt aatcttgggc
    12601 aatatttttt taattctaat ttttcagtag tatttttact atttttatag gtgctataat
    12661 taatatcacc acattcttca cactttaaac caactttaat tctcatttca attttcctta
    12721 aaaaattaaa gccaagcttt taacttggct ttattaaatt atttaataat tttagaaaca
    12781 acacctgaac caacagtttt accaccttca cgaatagcaa aacgagttcc ttcttcaagt
    12841 gctactggag cgatcaagct tacagtaatt ctcacatttt cacctggcat aaccatttca
    12901 acaccatcag ctaatttaat cgaacctgta acatcagttg ttcttacata aaactgtggt
    12961 ctatagttgt taaagaatgg agtatgtcta ccaccttcat ctttatttaa gatataaact
    13021 tcagcttcga agtcagtgtg tggagtaatt gattttggtt tagcaagaac cataccacgg
    13081 ataacttctt cttttttagt accacgaaga agaacaccta cgttatctcc tgcttcgcct
    13141 tgatccattt cttttctgaa catttcaaca cctgttacag ttgttgtttg agtatcttta
    13201 ataccaacga tttcgatagt atcacctact tttacaacac ctttttcaat tctacctgta
    13261 acaacagtac cacgacctga aattgagaaa acatcttcaa ttggcatcaa gaagtctttt
    13321 tcagtatcac gagttggagt tggaatatag ctatcaactg cagccataag atccataatt
    13381 tttgctgacc attcaccatc ttgtccagct ttagcttctt caagagcttt taaagcagaa
    13441 ccagaaataa taggtgtatc atcgcctggg aaatcataag agcttaataa ttctctaatt
    13501 tccatttcaa ctaactctaa aagttcagca tcatcaacca tatctgcttt attcataaaa
    13561 acaacaatat atggaacgcc tacttgacga gaaagaagaa tgtgctctct agtttgtggc
    13621 atagggccat ctgcagcaga aacaaccaag atcgctccat ccatttgtgc agcacctgta
    13681 atcatgtttt taacataatc tgcgtgacct gggcagtcaa cgtgtgcata gtgacgattg
    13741 tctgtttcat attcaatatg agaagtagca atagtaatac cacgctcttt ttcttctgga
    13801 gcattatcga tattatcata atctttaagc tctgctaaac ctcttctaga aagaacagca
    13861 gaaatagcag ctgttaaagt agttttacca tggtcaacat gaccaatagt accaatattt
    13921 acgtgtggct tattacgtga aaatttttct ttagccattt ttttcctccg tataaaaaat
    13981 aaattgagca aagcaagtct tatatctata taattttttc aattcatgga gctcatagcg
    14041 ggaattgaac ccgcgacctc tcccttacca agggagtgct ctacctctga gccatacgag
    14101 cgctcagaaa aattatacac aataacagac aacaaaaact cttaaatggg atatatactg
    14161 taagttaaag gttttaaaat acagctccca gttcttttaa attattggag cgggaaacgg
    14221 gactcgaacc cgcgaccctc agcttggaag gctgatgctc tagccaactg agctactccc
    14281 gcaaagcatg gtggtgagtc gtggattcga accacggaag gcgaaagcca gcagatttac
    14341 agtctgccct cgttggccac ttgagtaact caccataaaa atattgcttt ttcaatattc
    14401 tggtcaaaca ctgctaaaat aaatggagct ggttaaggga cttgaacccc cgacctgctg
    14461 cttacaaggc agctgctcta ccaactgagc taaaccagca aaaataaaag taagattata
    14521 actcaaaaaa aaaattttgt caagactttt ttagtttttc tataaaattt tagtcttgta
    14581 aattttatta tcataaacca atattatttt tatctatatt atgataatca aataaattta
    14641 aaaatttctt tgctctttcg ctttttggat ttttaaaaaa acttttagga tcattttctt
    14701 cgatgatttt tccttcatcc ataaaaataa ttttatctgc tacagcttta gcaaaaccca
    14761 tttcatgagt aacaataagc atagtcatac cctcttttgc aagatttaac atcacttcta
    14821 aaacttctct gacaatctca ggatccagcg ctgctgtaac ctcatcaaaa agcattaact
    14881 caggattcat gcataaactt cttactatgg caattctttg cttttgtcct ccgctaagtt
    14941 ctcttggata agcatgaatt ttatgcaaaa gccccacctt ttcaagccaa attttagcct
    15001 cttttaaaac ctcatctttc tttctttttt gcactttcat aggccctaga agtatatttt
    15061 cttcaacact taaatgctca aaaagctcat aagattgaaa aaccatacca actttttgac
    15121 gcattcttgg ccattcttta aaatctttat ctattttctc attatcaata taaatattac
    15181 cacttgcaat ctcttcaagc ccattaatac aacgcaaaag cgtagatttt ccacatccgc
    15241 taggacctaa aatcaccaca acttctttag ccttaacttc taaattaata tcttttaaag
    15301 catgatgcga accataatac ttttgtaaat tttctatttt tagtatactc attttagctc
    15361 cattttttct ctaattttct tgaatataaa gtgataggat aacaaagtat aaaaaagata
    15421 aaaaaaatca aaccataaat aataaaaggt gcaaaatcat ttctattatg aaattctata
    15481 atttgttgcc ctacttttac aagctctacc gcgccgatta aataagcaaa ggttgtactt
    15541 ttaatcatac gagtaagtaa attcatgctc ataggagtta aacgacgcat agcttgtgga
    15601 ataataacat aagcaaaact ttgcaccgta tttaaaccta aagatgatgc actttcatac
    15661 tgatgttttg gaatactctg caaggaaaca cgcaccaaat ccatcatctc aaaacaaccc
    15721 caaatgctaa aaacaataat agctgcactt acagaactca aatcccaccc aaaccatcta
    15781 ggaaaaccaa aatacaccac aaaaagccat actaaaagtg gcataacacg cacaaattct
    15841 aaacccaaac gacaaaaagc atagatatag gtatttttaa aactcattaa aattcctaaa
    15901 aataacccac ctatcgaagt aataataatg ctgataaatg aaatttcaag agtgacaaaa
    15961 agcccttgcc agagtcttaa aagcgtatcg gtatttaaaa gttcaagcat gaagcaacct
    16021 tttttcaaac tttagcaaaa taaaagacaa aggcaaaata atgcataaat atcccataaa
    16081 caacaaaaac aatagctcat ctgtcttata ggttaaggaa tttaaactct tcattaaatt
    16141 caccaaatct ggcaaggcaa taatactaac gactgaagtt tctttgatta aaaatataat
    16201 attagcacta atacttggca tagaaatagc caaagcttgc ggcaaaatca cataacgcaa
    16261 atttccaaat tttgaaaaac ccaaagaaag tcccgcttca aactgctgtt ttcttatggc
    16321 ttcaaatccc gctcttaaac tttcagccat ataagaacct cctaaaaaac taagtcctac
    16381 tatagcacaa gcaaaagaag gccttaaagt ttcttctacg cttaagcaaa tcaaatcaag
    16441 cggtggaatt tgctctaaat gtatattaaa tttaggtaaa gcataatata agaaaaaaag
    16501 ttgaattaat aaaggcgtat ttcttgaaaa ctctatataa agcttgcaaa tattttctaa
    16561 aatttttatt ttaaaataac tcattaaaat acaaaacaaa cctattatca aagaaaaaat
    16621 aattccaaaa aagcttagtt ttatcgtaag ccaagcagcc gttaaaaaag caggagcttg
    16681 agctaatata aaatcaaaat ccattctcta ccttaaattt taccaaagtt ctttcatgat
    16741 catatcttta tttaaaattt caattctacc tttttttgta tcaataagtt ctgaaatttt
    16801 aagttctttt aacactcgag ataaagattg cgctctaaca tttaaatcaa ttgcaatttg
    16861 tttttgtgaa attgtatcta aatttttttc attttccaaa agatacttta ataatctcgt
    16921 ccttaaatct aatgcatttt gagataattt cttttctaaa attttaattt tatcaaaaag
    16981 tgaactgat
//
LOCUS       DAPIWJ010000031        16800 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.031, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000031 DAPIWJ010000000
VERSION     DAPIWJ010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16800)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16800)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16800
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.031"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            112..3066
                     /gene="cas9"
                     /locus_tag="RJ259_000793"
     CDS             112..3066
                     /gene="cas9"
                     /locus_tag="RJ259_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344900.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
                     /protein_id="HDV7366515.1"
                     /translation="MVRILAFDIGISSIGWAFSENDELKDCGVRIFTKVENPKTGESL
                     ALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPY
                     ELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQ
                     SVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSF
                     SKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLN
                     NLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKK
                     YKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKD
                     HLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNP
                     VVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDA
                     ELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRS
                     FDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNY
                     KDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAK
                     SGMLTSALRHTWGFSTKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELY
                     AKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEF
                     YQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFAL
                     KVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTS
                     STVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVT
                     KAEFRQREDFKK"
     gene            3063..3953
                     /gene="cas1"
                     /locus_tag="RJ259_000794"
     CDS             3063..3953
                     /gene="cas1"
                     /locus_tag="RJ259_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HDV7366516.1"
                     /translation="MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINII
                     VLESLQISISSALFNAFAKYKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSA
                     QKKAILWQKIIKNKILNQAFILKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYF
                     KTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALC
                     DDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYV
                     ANFKNALLYEDELKIVKFDD"
     gene            3946..4377
                     /gene="cas2"
                     /locus_tag="RJ259_000795"
     CDS             3946..4377
                     /gene="cas2"
                     /locus_tag="RJ259_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HDV7366517.1"
                     /translation="MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFS
                     VYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNE
                     TNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF"
     gene            complement(4875..6065)
                     /locus_tag="RJ259_000796"
     CDS             complement(4875..6065)
                     /locus_tag="RJ259_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HDV7366518.1"
                     /translation="MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKN
                     QPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSD
                     TLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAEL
                     GFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFP
                     LLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRH
                     IKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTP
                     YLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDI
                     IFMP"
     gene            complement(6069..6515)
                     /locus_tag="RJ259_000797"
     CDS             complement(6069..6515)
                     /locus_tag="RJ259_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HDV7366519.1"
                     /translation="MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGG
                     IEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKL
                     GLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG"
     gene            complement(6516..6737)
                     /locus_tag="RJ259_000798"
     CDS             complement(6516..6737)
                     /locus_tag="RJ259_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HDV7366520.1"
                     /translation="MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAV
                     SLNDEIIFNENTKLKDGDKIALLPPVCGG"
     gene            complement(6739..8280)
                     /gene="cueO"
                     /locus_tag="RJ259_000799"
     CDS             complement(6739..8280)
                     /gene="cueO"
                     /locus_tag="RJ259_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HDV7366521.1"
                     /translation="MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTS
                     FINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKT
                     LFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAG
                     EERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMI
                     SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLN
                     LRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDK
                     MMVKEESNTLFLANINLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGK
                     SENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFEL
                     ISSKLNGKVQKAEFRAFRDTINVRPNEELRLKMKQDFKGLRMYHCHILEHEDLGMMGN
                     LEVKE"
     gene            8404..9552
                     /gene="nspC"
                     /locus_tag="RJ259_000800"
     CDS             8404..9552
                     /gene="nspC"
                     /locus_tag="RJ259_000800"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HDV7366522.1"
                     /translation="MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFA
                     FSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVF
                     NSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTI
                     EGLHFHALCEESAGALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIAL
                     CKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIM
                     PYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKI
                     VFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN"
     gene            9856..10569
                     /locus_tag="RJ259_000801"
     CDS             9856..10569
                     /locus_tag="RJ259_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HDV7366523.1"
                     /translation="MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTM
                     QECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENS
                     NPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINK
                     SIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEF
                     LRREANKQRRTREKSQGIS"
     gene            10544..10735
                     /locus_tag="RJ259_000802"
     CDS             10544..10735
                     /locus_tag="RJ259_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HDV7366524.1"
                     /translation="MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKK
                     KEVLFQRSANWENYYIKAE"
     gene            10735..11277
                     /locus_tag="RJ259_000803"
     CDS             10735..11277
                     /locus_tag="RJ259_000803"
                     /inference="COORDINATES: protein motif:HMM:NF016750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HDV7366525.1"
                     /translation="MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELK
                     EAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMV
                     RSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAY
                     YIRKFAAFFGTNNVDHQARI"
     gene            11326..13539
                     /locus_tag="RJ259_000804"
     CDS             11326..13539
                     /locus_tag="RJ259_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HDV7366526.1"
                     /translation="MTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIV
                     VDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREE
                     AAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQ
                     MVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYE
                     WLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQ
                     QVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQW
                     RFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRS
                     IGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTD
                     IEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQE
                     KEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDL
                     VQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYL
                     TRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHF
                     TGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK"
     gene            13536..14177
                     /locus_tag="RJ259_000805"
     CDS             13536..14177
                     /locus_tag="RJ259_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HDV7366527.1"
                     /translation="MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIR
                     RRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCG
                     YCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVP
                     VCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL"
     gene            14174..15106
                     /locus_tag="RJ259_000806"
     CDS             14174..15106
                     /locus_tag="RJ259_000806"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HDV7366528.1"
                     /translation="MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTF
                     GKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHF
                     IAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLCWIKRML
                     PASYDIRWMMIVGGYLSKIKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDF
                     NSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYK
                     EEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI"
     gene            15273..16055
                     /gene="fdhD"
                     /locus_tag="RJ259_000807"
     CDS             15273..16055
                     /gene="fdhD"
                     /locus_tag="RJ259_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HDV7366529.1"
                     /translation="MDPLFTTQILKYKGDESFTCNDTLVREIKLEIFINDEKVGALMA
                     TPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVI
                     SGCGRAHTANIDPEAIEASKISSDAKFSKDEILKQMSTFYTQCELYEKTGCVHTAKLF
                     VDEKTFFIGEDIAQHNTIDKALGKACLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPV
                     LVSRTAPTCLGVMIARKFDLTLCGFARENKINIYSGEFRIHG"
     gene            16048..16785
                     /locus_tag="RJ259_000808"
     CDS             16048..16785
                     /locus_tag="RJ259_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HDV7366530.1"
                     /translation="MDKNQEKEIISYMRELLNSNEKLDCGTAFKIAKKFNINIEKIGQ
                     LADENHMRIDNCELGQFGHLDFEKAKIEVLKKIEPSLDEKRRIFCKDARDIAKEGCGL
                     KSMRSALKTYKVDVKYCQLGCFKEKKGKQFIVRTKTWIENADGDLLFGRGKTELLELI
                     GQTGSLLHASKLMGINYKKAWMHLQTLQKNSQEILVSTRQGRSKESGTKLTPRAMELM
                     ENYSILQKDIEEYANKRFKELFLKGKK"
BASE COUNT         5972 a         2232 c         3064 g         5532 t
ORIGIN      
        1 ataaaattaa taatatgtat agtttggtta ctgaaaagtt tatgtttgtt taaaaaaatg
       61 atttttgtat tataattata cacaaatcat aaatattaaa aaggatctag tgtggtaaga
      121 attttggcat ttgatatagg aataagctct attggctggg catttagtga aaatgatgag
      181 ttaaaagatt gtggagttag gatttttaca aaggttgaaa atcccaaaac aggagaatcc
      241 ttagccttgc caagacgcct tgcaagaagt gctagaaaac gccttgctag acgcaaagca
      301 aggctaaatc acttaaaaca tttaatcgca aatgaattta agttaaatta cgaagattat
      361 caaagctttg atgaaagttt agccaaggct tataaaggat ctttaattag cccttatgag
      421 ttaagattta gagctttaaa cgagctttta agtaagcaag attttgcaag agtgatttta
      481 catattgcaa aaaggcgtgg ctatgatgat attaaaaata gtgatgataa agaaaaaggt
      541 gcgattttaa aagctatcaa gcaaaatgaa gaaaaactag caaattatca aagtgtgggc
      601 gagtatcttt ataaagagta ttttcaaaaa ttcaaagaaa attccaaaga atttacaaat
      661 gttagaaata aaaaagaaag ttatgaacgc tgcatagcgc aaagtttttt aaaagatgaa
      721 ttaaagctta tttttaaaaa acaaagagaa tttggctttt ctttttcaaa aaaatttgaa
      781 gaagaggtgc ttagtgtagc attttataaa agggctttaa aagatttttc tcatttggtg
      841 ggaaattgta gtttttttac cgatgaaaaa agagcgccaa aaaattcgcc cttagctttt
      901 atgtttgtag cacttacaag aattatcaat cttttaaaca atcttaaaaa tactgaagga
      961 attttatata caaaagatga tttaaacgcc cttttaaatg aagttttaaa aaacggcact
     1021 ctaacttata aacaaacaaa aaagcttttg ggcttaagcg atgattatga atttaaagga
     1081 gaaaaaggaa cttattttat tgagtttaaa aaatacaaag aatttataaa agccctaggt
     1141 gagcataatt taagccaaga tgatttaaat gaaatagcaa aagatattac ccttataaaa
     1201 gatgagatta aacttaaaaa ggctttagca aaatatgatt taaatcaaaa tcaaattgat
     1261 agtttaagca aattggaatt taaagaccat ttaaatataa gttttaaagc cttaaaactt
     1321 atcactcctt taatgcttga aggtaaaaaa tacgatgaag cttgcaatga gcttaattta
     1381 aaagtagcaa tcaatgaaga taaaaaagac tttttacccg catttaatga aacttattac
     1441 aaagatgaag taactaatcc tgtggtttta agggcgatta aagaatatag aaaggtctta
     1501 aatgccttac ttaaaaaata cggtaaagtg cataaaataa acattgaatt agcaagagaa
     1561 gtaggtaaaa atcacagcca aagagctaaa atagaaaaag agcaaaacga aaactacaag
     1621 gccaaaaaag acgccgaact tgaatgtgaa aaactaggct taaaaataaa tagcaaaaat
     1681 attttaaaat taagattatt taaagaacaa aaagaatttt gtgcttatag tggagaaaag
     1741 attaaaatta gtgatttgca agatgaaaaa atgcttgaaa ttgatcacat ttacccttat
     1801 tctagaagtt ttgatgattc ttatatgaat aaagttttag tttttaccaa gcaaaatcaa
     1861 gaaaaactta ataaaacccc ctttgaagcc tttggcaatg atagtgcaaa atggcagaaa
     1921 attgaagttt tagcaaaaaa tttacctact aaaaagcaaa aaagaatttt agataaaaat
     1981 tacaaagaca aagagcaaaa agactttaaa gatagaaatc taaacgatac tcgctacatc
     2041 gcaaggcttg ttttaaacta cactaaagat tatttagatt ttttaccttt aagcgatgat
     2101 gaaaatacaa agttaaacga cacacaaaaa ggctcaaaag tgcatgtaga agcaaaaagc
     2161 ggtatgctta catcggcttt aagacacact tggggcttta gcactaagga tagaaataac
     2221 catcttcatc acgccatcga tgcagtaatt attgcttatg caaacaactc tatcgtaaag
     2281 gctttttcag attttaaaaa agagcaagaa agcaacagtg cagaacttta tgcaaaaaaa
     2341 attagtgaat tagattataa aaacaaaagg aagttttttg agccttttag tggttttagg
     2401 caaaaggttt tagataaaat tgatgaaatt tttgtctcaa aacctgagag aaaaaagcca
     2461 agtggagctt tacatgaaga aacatttaga aaagaagaag aattctatca atcatacggc
     2521 ggaaaagaag gagttttaaa agccctagag cttggtaaaa tccgcaaagt aaatggtaaa
     2581 atagttaaaa atggcgatat gtttagagtg gatattttta aacacaaaaa gacaaataaa
     2641 ttttatgctg tgccaattta tactatggat tttgctttaa aagtattacc aaataaagct
     2701 gtagcacgaa gtaaaaaagg tgagataaaa gactggattt taatggatga aaattatgag
     2761 ttttgctttt ctttatacaa agatagtttg attttaattc aaactaaaga tatgcaagag
     2821 ccagaatttg tttattataa tgcttttaca agctctactg ttagtttgat tgtttcaaaa
     2881 cacgataata aatttgaaac gctaagcaaa aatcaaaaaa tattgtttaa aaatgcaaat
     2941 gaaaaagaag taatcgcaaa aagcatagga attcaaaatc taaaagtatt tgaaaaatac
     3001 atagtttcag cacttgggga agttacaaag gctgagttta gacaaagaga agattttaaa
     3061 aaatgagtta cgatgaagct tttaaaacac tgcttattag ctctaatgcc aagctaaatt
     3121 tagagctaaa tcatcttgtg attaagcaag atgaaaatat agccaaattg tttttaaaag
     3181 atataaatat catcgtttta gaaagcttac aaataagcat tagttccgca ctttttaatg
     3241 cctttgcaaa gtataaaatt atcttattaa cctgcgatga aactcatagt ataaatggcg
     3301 tttttactcc ttttttaggg cattttcaaa gtgcaaaaat cgcaaaagag caaatgaatg
     3361 taagtgctca aaaaaaggct attttatggc aaaaaatcat taaaaataaa atcctaaatc
     3421 aagcctttat cttaaaaaaa cacaataaaa tagagcaaag caatgagctt ataaatttgg
     3481 ctaaaaaagt aagcttaaat gatagtaaaa atattgaagc tgttgcggcg gcgctttatt
     3541 ttaaaacttt gtttggtact tctttttcaa gagatgagct ttgctttgaa aattctgctt
     3601 taaattatgg ctatgcaatc attagggctt gtattattag agcagtttgc ataagtgggc
     3661 ttttgccttg gcttggcata aagcacgata atatttataa ttcttttgcg ctttgtgatg
     3721 atttgataga agtgtttagg gctagtgttg atgattgtgt tttaaagctt aagggtgaaa
     3781 gtgagttttt aagcaaagat gacaaaagag cgttgattgg caatttacaa agtaaaatca
     3841 attttgatgg gcaaaattat cctttaaaca gagcgataaa tcattatgtg gcaaatttta
     3901 aaaatgcttt attgtatgaa gatgaactaa agatagtgaa atttgatgat tgaagataaa
     3961 tttatgcgtg tgcttttgat gtttgatgtg ccaactaaaa gtaaaaaaga gcaaaaacta
     4021 gcaagtaaat ttagaaataa tcttataaaa ttaggttatt ttatgctgca atttagtgtt
     4081 tatatgcgta tttgcaaggg tttaagttct gcaaaaagtt ctattgaaaa tgtaaaaaag
     4141 attttgccac cttatggaaa tgtaagggct ttaatcatca ctgaaaagca atttgataaa
     4201 atggagcttt tgcttggtgg catagttttt aacgaaaaag ttaataacga aaccaattta
     4261 acgctttttg atatagatag tcatggagaa tttaaatata aaaattcaaa taatgaagaa
     4321 attcaaataa acaaaaaaca agaaaaatat catcagcaaa atttatttga attttaaaag
     4381 cggttttagg ggattgtaac cccgcagagt cccgcaaact ctttatttta gtcccttttt
     4441 aaatttctta tgagattata gcataatttt tgctattttt catgaaaaaa ccccgaaatt
     4501 ttcattatct ggtaaatatc tattttacca taaagaaatt taaaaaggga ctaaaactat
     4561 atttattatc ccaaatccta aaatcaaatt ttaccataaa gaaatttaaa aagggactaa
     4621 aacgtgccat catcagattg agcaaaatat cctattttac cataaagaaa tttaaaaagg
     4681 gactaaaaca gttaaattca actaatgaaa ctttggaaaa ttttaccata aagaaattta
     4741 aaaagggact aaaacaaacc ctagtggatt gaaactccac tagggctaat tactccacta
     4801 aaaggaggtt gcgaatttga aacttattga aatttagggt tgattaaaat cgaaataaaa
     4861 ttatttaaat aattttaagg cataaagata atatctacta aactttcatt ttctaacatt
     4921 tcacattctt ttggcaccac cataagggca gctttattgt taagattgtt tataatcgca
     4981 ctagagcctt cttttttgcc ttcaagattg gctaaaatgc gtccattttt aaactctata
     5041 ttgcaagcga caaattccaa ataaggtgtt tttttcttgt aacttccttg taaaaaggct
     5101 ttgcaaatat agtctttagg ttgaagtaac caagagttta aaatctctct tgtgtaaaga
     5161 ttaaacatta ccatagccga gtaaggaaaa cctggtaagg cgatgatgaa tttttcatta
     5221 gccttagcta ttttgatatg tctacctggt tttatgtcgg ctttatcgat gatgatttcg
     5281 tattctttga tggctttttt taaaaagtca aaatctccca tagaaacccc gcccgttgta
     5341 accaaaatat cacaactttg caaagcactt tcaagggtgg aaaaagtggc tttctcatca
     5401 tcttttaaaa gaggaaaaac ccttgtatcg caatttaaat ttttagctaa attagctatg
     5461 gcgatatgat ttgaagagcg gatttgagca ggattttcca aggcttctcc tagatctttg
     5521 atctcacttc cactacttaa aacccctaca ataggtttta taaacacact aatgtgaaaa
     5581 aatccaagtt cagctaaaag agctatctcg ctataattta accttgtgcc ttttttgagt
     5641 aaaatttcat cttttttata gttttctcct accgcacgca cggcaaaagc ttggggaact
     5701 tttttttcta taaaaagagt attattttct atgcgtatat tttcaacagg gactaaagta
     5761 tcgcttcctt cgctcatgag tgagcctgta aaggttttta cacaagtgcc attttgtacg
     5821 ctaaattgtg gcatagtacc cgcaggtgtg aggcctaaaa tttttaaagg cttgtcttga
     5881 tcttcaaatt tgatcgcata accatccata gccgaggttg gaaattcagg ctgattttta
     5941 ggggctttta tatcttgagc taaaatgcgt cctaaacact ctgtaagagc tattttttca
     6001 atcttttcat aagttttgat atgagaatgt aaaattttta aactttcttc ataagacatt
     6061 agcatttttt atccttttaa aagtcctgca ccgcaaagct tggttgatct ttctttggca
     6121 taaattcttt ctttgtttat cacatcatac ttccaaatgg gcgcacttgc tttaaaatct
     6181 tcaacaaatt cattaagaag tttaagtcct aattttcttt gtttgcttaa aattcctgca
     6241 aaatacgagc tttcatgtat cgctacatcg cctatagagt gagcaaaaag caagctaata
     6301 ccatcaaaat ctactctttt ttgccactca tcaaaccatt tttttaaaag cgattcataa
     6361 atatcaaaac taagtgcctc aatacctcct tcttcacgca caataccaca aaaagtcagt
     6421 aaagcaccgc agtttttatc cttggaaaat tcataccatt ggctataaat tttaggaata
     6481 tctaaagagc cttgataaag tgtaaaatgt ttcatttagc ctccacaaac tggcggtaaa
     6541 agtgctattt tatcaccatc ttttaacttg gtgttttcat taaaaatgat ttcatcattt
     6601 aaagatacag cacaaagttc tagccattct tttaaactct catctttttg caaaatttct
     6661 tttaattctt ttaaattttt tacttcaagt tctaaatttt ctttatttat agggcctaaa
     6721 aattccactt ttaccatttt attcctttac ttctaaattt cccatcattc ctaaatcttc
     6781 atgttctaaa atatggcaat gatacattct aagtccttta aaatcttgtt tcattttaag
     6841 tcttaactct tcattaggac gcacatttat agtatctctg aaggctctaa attcggcttt
     6901 ttgaactttg ccattgagtt ttgatgagat gagttcaaat tgcgtgccgt gtatgtggaa
     6961 aggatgatcc atgtgagatt tgtttatcac tatccagtct tcaactactc caagcttgga
     7021 gcttaaatca atgcgtttta aatcatagct tttgccattg attaaaaaca tagacgcaag
     7081 agcgattttt aattcatttt cactttttcc catcattcca tgcatttgca tatgatcttc
     7141 actcatgatt atttctttaa attccttagg ttcttctaaa ggtttgaaaa tttttaaatt
     7201 ttttggaagt tctaattttt ctttttttag gttaatattg gctagaaata gggtattaga
     7261 ttcttctttt accatcattt tatccctatc ataataagca ctttctagct taaaattccc
     7321 atcttttgga gcgtcgatta aaacttctac acgagaagca ggacttaaga aaagttcttc
     7381 tttataaata gctttttcta taagtccacc atcagtacca acaagtataa acttagctcc
     7441 ttgtatgcgt aaatttaaat atcttgctgc agtagcatta taaatgcgta tgcgttcgtt
     7501 tgtggcgagt ttgattttag gtttaaattg tccattgatg agtacaaatt ctccttctct
     7561 accatttagc caatcattta ggttgttgtt tggaatttga gcgttttcat caagacgcaa
     7621 atcgctaatc atcaaatctt tttcttttaa atgacttaaa gcatcttttt ttgctttgat
     7681 cacaaaagcc cctgctaaac ccataaaaac ttgtttagaa gccgtataat gaggatgtgg
     7741 atgataccag taagttcctg cgctatcttg aggaatttca aaacgatata ttctttcttc
     7801 tcctgctaag ataggatcat gtgggcttcc atcttgatca ggtggcacag gaacgccatg
     7861 ccaatgtata gttgtagctt ctttgagttt gtttttgact aaaatttcaa gtttatctcc
     7921 ttcaaaaact tctatttttg gagcaggcac gaggccattg taagtataaa ataaggtttt
     7981 tttacctttg ataagctcta tatgattttc tttgatttct agggtagcac gaaaaatatt
     8041 tttttcttta ctttcatttt tgagtaaagg caaggctttt aaaatttctc cttgggggaa
     8101 ttgttttgga tctaaaagct ttaaattttt tggagcaaag tttataaaag aagtatctaa
     8161 gtcatgattt atagaatgat ttttatgcat ggagtgcata tcatgcatag gatttgcata
     8221 ggctacaccc atacttgcta gagtgagtgc attaaatttt aaaaaatttc ttctattcat
     8281 tagtttttcc ttttgcttga ttttttgtat tatagtcatt atttttttaa ctttagtaaa
     8341 tatttatttt gaaaatttgg tttaattttg ttatgatttt agcaatttaa tcaaggaaaa
     8401 ataatgtttt atgaaaaaat tcaaacccca gcttatattt tagaagaaga taaattaaga
     8461 aaaaattgtg agcttttagc aagtgttggc gaaaaaagtg gtgctaaagt gcttttagct
     8521 ttaaaaggtt ttgctttttc aggagcgatg aaaattgttg gagaatactt aaaaggttgt
     8581 acttgtagcg gactttggga agcaaaattt gctaaagaat acatggataa agaaattcat
     8641 acttattcgc ctgcttttaa agaagatgaa ataggtgaaa tagccagctt atctcatcat
     8701 atagtgttta actctttagc tcaatttcat aaatttcaag ctaaaacaca aaaaaattcc
     8761 ttaggtcttc gttgtaatgt tgaattttct ctagccccaa aagaacttta caatccttgt
     8821 ggaagatact caagacttgg aattcgtgct aaagattttg aaaatgtgga tttaagtacc
     8881 atagaaggac ttcattttca cgcactttgc gaagaaagtg ctggtgcttt agaagctgtt
     8941 ttaaaggttt ttgaagagaa atttggcaaa tggatagggc aaatgaaatg ggtgaatttt
     9001 ggaggaggac atcacatcac taaaaaaggc tatgatgttg aaaagcttat tgctttgtgt
     9061 aaaaatttca gtgataaata cggtgtgcaa gtttatcttg aaccaggcga agcggtgggt
     9121 tggcaaacag gaaatttggt ggctagtgta gtagatatca tagaaaatga aaaacaaatt
     9181 gctattttag atacttcaag cgaagcgcat atgccagata ctatcatcat gccttataca
     9241 agtgaagttt taaatgctag aattttagcc acaagagaaa atgaaaaaat ttcagactta
     9301 aaagaaagcg aattttccta tttgcttact ggaaatactt gtttagcggg tgatgtaatg
     9361 ggagaatacg cctttgataa aaagcttaaa atcggcgata aaattgtttt tttagatcaa
     9421 attcattaca ccattgtgaa aaacacaact tttaatggta taagacttcc aaatctcatg
     9481 cttttaaatg caaaaaatga acttcaaatg ataagagaat tttcttataa ggattattct
     9541 ttaagaaatt agtattattt ataatttgca taaaatgtta attttactcg gaagagaatc
     9601 aaagatgtaa attttatgca aagtatttta ttttttcaaa tataaaatca actcaaatat
     9661 ctaattttca atactttggt atgatttttt aatattttaa atccttgtgg aattttattg
     9721 aaattcagtg atttttaaat caaatagtat taagataaat cgatttaaaa atcggcttta
     9781 aaatgaatat taggtatatt ttgcataata ttcattcaag caaaatttaa agctattttt
     9841 gaaaattttg aatgcatggg agctttaatg gatttggaaa aattaagatt agctagaagt
     9901 ctttattatc aatgtctagg agagcttttt gttttttcat tttctgaaga aagattgtca
     9961 aaattacaag agtatttaaa gacaatgcaa gaatgtttat ttgatgaaaa tttaaaatca
    10021 aattttgata tcttgcttaa gcatttagat gatgaaaatt ctatacaagc attttttaaa
    10081 gaatatgatt tgcttttttt aagtcttaaa aatagcattc caacgacttt ttcttacata
    10141 gaagaaggtt ttgaaaattc aaatccttta ctttgcgtgc gtcaaatttt agtcaaaagt
    10201 aaaataagac gcaatgaaaa attttttaaa gaaagtgaag atagtgttgg attttgttta
    10261 ttgttgatga gtgaattttt aaggcaaaat gaagatgatt tagccaaaga gctttttgaa
    10321 aaagtgatca ataaaagcat tgatgagttt ttaggcgatg ttttcatgaa taaaaatgcg
    10381 aatttatata aggaaattgc aagtattgca tcggctttta tggaatttga aagactttgc
    10441 tttgaagtgg aaaaacctgc aaaaataaat tctaaaaaag tgcaaaacga tctatcgcgt
    10501 tcagaatttt taagaagaga agcaaataaa caaaggagga ctcgtgaaaa atcgcaggga
    10561 atttcttaaa aaatccgctt ttgccttagg ggctgctgga gtgcttggta gcacaacttt
    10621 agctctagct aaagatgaag aaagaaaaga tttagttaaa ggtaaaagta agaaaaaaga
    10681 agtgcttttt caaagaagtg ctaattggga aaattattat ataaaggctg agtaatgtca
    10741 agtgtaggtg aaaatatcaa gcttacgcgt cgttcttttc ttaaaatggc agcactttca
    10801 agcctagcaa caccgttgct tgctagaagt gaaactttaa gagaagcgag tgctgatgag
    10861 cttaaagaag cttatgaagg tagtaaaaaa gtaaaaacag tttgtacagc ctgttctgta
    10921 ggctgtggga ttattgcaga agtgcaaaat ggtgtttggg tgcgtcaaga aatcgctcaa
    10981 gatcatcctg tgagttcagg tggacattgc tgcaagggat ctgatatgat cgatatggtg
    11041 cgttcacatg tgcgtttaaa atatcctatg aaaaaagaaa atggagaatg gaaacgcata
    11101 agttatgagc aagctttaag tgagatcgga gaaaaactag ctgcttatcg taaagaaaat
    11161 cctgaaagtg ttatgttttt aggttctgca aaacttaata atgaacaagc ttattatata
    11221 agaaaatttg cagcattttt tggaacgaac aatgtagatc atcaagctag aatttgacac
    11281 agcgcaacag tcgccggtgt ggcgaataca tttggttatg gcgctatgac aaaccatctt
    11341 ggagacatcc aaagaagtaa atgtatcatt atcattggag caaatccagc ggtaaatcac
    11401 cctgtgggtt ttagacattt cttaaaagca aaagaaaaag gtgcaaagct tatcgttgta
    11461 gatcctagat ttacaaaaag tgcagcaaaa gcggatattt atgcaagaat tcgtccagga
    11521 actgacattg ctttcatgta tggaatgtta aaaatcattt ttgatgaagg cttggaagat
    11581 acaaaatatc ttgatgaaag agtttttgga attgataaaa ttcgtgaaga agcagcaaaa
    11641 tggacagttg aagaagtgga aaatgttaca gggatctcta aagaactttt ggtgcaaatc
    11701 actcacgaag tagctaaaaa caaaccaact acgcttattt gggctatggg tttaactcaa
    11761 catactgtag gaacttcaaa tacacgttta gcacctattg tgcaaatggt acttggaaat
    11821 ataggtaaat ttggtggtgg agttaatatc ttacgcggac acgataatgt tcaaggtgct
    11881 tcagatatgg cttgtttgag cgaaaattta ccaggttatt atcctttaaa tgaagcgact
    11941 tggagatact atgccaaaat ttggggtgtg gattatgagt ggcttttagg aaattttgta
    12001 agcaaagatt ggatgcataa aactgggctt tcacttgcta gatggtgggc agcggcttta
    12061 aatggaaaag atggaaatga tgctatcgat aatgcaggaa cgcctttaaa agctttagta
    12121 gttatgggaa atggtattac ttcgactgca caacaagtaa aagttaaaga aggtttggaa
    12181 gctttagagc ttttagtttt agccgatcct tttgtaaatg aagcagggat tattgcagaa
    12241 agaaaagatg gaatttatct tttacctgca gcaacacagt ttgaaacaag cggaagtgta
    12301 acagcaacaa atcgtagcgg acaatggaga tttaaagttg tagatccact ttatgaaagc
    12361 atggaagatc aagaaatttt atttgagctt gctaaaaaat taggttttta tgaagacttt
    12421 accaagactt tacgcgatga aaaaggtgag attgtttggc ctgaaaatgc aacaagagaa
    12481 attgcaaaag cagttagaag tatagggctt aatggttgga gtcctgaaag gcttaaaaag
    12541 catactttat actgggataa atttgatgag gtaactttag aaggaaaaga cgaagttgct
    12601 ggcgagtatt acgggcttcc ttggccttgt tggagtgata agcacccagg ttctcctgtg
    12661 ctttataata ccgacattga agtagcaaaa ggtggtatgg gctttagaaa caattttgga
    12721 cttgaatatg aaggagagag tttacttgct aagaatgcac ctttaaattc acctattgat
    12781 acaggttatc cacaaattac taaagataat atagaaaaag ttttaggtat tactttaagt
    12841 gctcaagaaa aagaaaaaat gggatcaact tggtcttatg atgatagcaa tatcatagca
    12901 actaaatgta tagaaaaagg catagttcct tatggaaatg ctaaagctag agctgtagtt
    12961 tggactttta aagataaaat tccactccac cgtgagcctt tacattctcc aagaaacgat
    13021 ttggtgcaaa aatatccaag ttttgaagat caaaaagcgc tttaccgcgt ggatactaaa
    13081 tttgtttctg tgcaacaagc taaggattat tctaaagaat tcccgcttaa tcttgttact
    13141 gcaagacttg tgaatttaaa tggtgcaggt atggaaaata gagcatctat gtatctaacg
    13201 cgtttaacac ctgaaatgtt ttgtgagatc aatcctgaat tagcaaaaga gcaagacatt
    13261 aaagcaggag atatgatttg ggtgcattct ccagaaggta ctaaaattca tgtaagagtg
    13321 aaggttaatc caggtgtagc aaaagatatg attttcttgc ctttccattt tacaggagtt
    13381 atgcaaggcg tggatttaac gcacaatttc ccagaaggaa ctaagcctta tgcaagcgga
    13441 gaaagtgcta atacggtaac aaattatggt tatgatatca tgtgtcagat tccagagact
    13501 aaaggtggac tttgtagaat cagtaaggat ggaaaatgag taaggtaaat tttgcaaatt
    13561 tagaaaaaga acgcttgaaa ttcttttgtg ataatgagcg ttgtattgat tgtaatggtt
    13621 gcgcggtagc ttgtgatgaa gcacatgagc ttcctattca tattcgccgc cgccgtgtga
    13681 ttactttaaa tgaaggaatt caaggaaaag aagtttcaac ttctatttct tgtatgcatt
    13741 gtgatgatgc tccttgttct atcgtttgtc ctgtggattg tttttacatc cgtgctgatg
    13801 gtattgtttt gcatgataaa gaaatttgca taggttgtgg atattgtctt tatgcttgtc
    13861 cttttggtgc accacaattt ccaaaagata gtgtttttgg aaataaaggc attatggata
    13921 aatgtactat gtgtgcaggt ggccctgaag caacgaattc agaaaaagaa agagaacttt
    13981 atggtcaaaa tcgtatcgca gaaggaaaag tccctgtatg tgctgcgatg tgttcgacaa
    14041 aagcactttt agtaggtgaa agttctaaaa tagaagagat ttatcataat agacttatga
    14101 atagaaatta tggcattcca aatccttcgg aaagtttgga atggaagatt gcttacacag
    14161 gaaaggaacg cttatgagaa aagtatttgt aacgctttta ttaagcgtag tgagtttatt
    14221 tgcttatggt agcgagagaa tgggacaaga tactcaaatt tgggattttc atcgtattac
    14281 aaatatccca aattatgata cttttggcaa actttggaca actttgcaag gtgaatatat
    14341 agctactata gctttaatcg ctgttattgc ggtattgtct gcatttgctt tgcattatat
    14401 ggttatagga cctaagcaat tttcacacga tggaaagaaa atttatgctt ttacattatt
    14461 tgaaagactt tttcatttta tcgcagcgat ttcttgggtg attttagtgc caactggttt
    14521 tgtgatgatg tttggagaag tttttggggg tggagttttt gtaagggttt gtaaaaattt
    14581 acacgctttt gcaacgattt tgtttatcat ctctataatc cctatgtttt tatgctggat
    14641 taaaagaatg cttcctgcaa gttatgatat cagatggatg atgatagtag gtggttattt
    14701 aagtaaaatc aaacgtcctg tacctgcagg taagtttaat tttggtcaaa aatcttggta
    14761 ttatatagct gtatttggtg gatttttgat gataattaca ggtggattta tgtattttct
    14821 tgattttaat tccacggcaa ttcaaggtct ttttggttta actcaaattg aacttttgag
    14881 aatttcagct atagtgcata atttcttggg tatagtgtgt gcagtgtttt ttggtgtgca
    14941 tatttatatg gcagtatttg caatcaaagg tagtatccat tctatgatta gtggttataa
    15001 agaagaagaa gaggtttata ttttacattc ttattggtat aaagaattaa gcaataaaaa
    15061 gcaaattgaa cctagttttt cttatgatcc taatgtgaaa atttaatctt taaccgctat
    15121 gttattacat agcggtagtt ttaagctttt ttgaaataaa tagaacgaat tttcttttat
    15181 aagttgaatc taaaatctat ttttccatat ataaatttgt tatttatgtt tttttgatat
    15241 aatattattt aaagatattt aaaggataag gtatggatcc gttatttaca actcaaattt
    15301 taaaatataa aggtgatgaa tcttttacat gcaatgatac tttagtgcgt gaaattaagc
    15361 ttgaaatttt tattaatgat gaaaaagtag gtgctttaat ggcaactcct gtagatgaac
    15421 aggcattagc aataggatat ttaatgagtg aaaatatcat tgcgaaagta agcgatattg
    15481 agagcataga aacaaaagat gatggtatga gtgtgcatat taaagcaaag attgataaag
    15541 aaaatttagc aaagcttaat gctgaaggtg tagttataag tggttgcggt agagcacata
    15601 ctgccaatat cgatccagaa gctattgaag cgagtaaaat tagttctgat gcaaaattta
    15661 gcaaagatga aattttaaaa caaatgagta ctttttatac tcaatgcgag ctttacgaga
    15721 aaacaggctg tgtacatacg gctaagcttt ttgtagatga gaaaactttt tttataggtg
    15781 aagatatagc tcagcataat accatagata aagctttagg aaaagcgtgt ttagctgggg
    15841 ttgatttaag tcaatgtttt ttaatggtta gtggaaggct aagttctgaa atggtagcta
    15901 aagcagttat gcataaaatt ccagtgcttg tttcacgcac ggctcctact tgtttagggg
    15961 ttatgatagc aagaaaattt gatttaacgc tttgtggttt tgctagagaa aataagatca
    16021 atatttatag tggagaattt agaattcatg gataaaaatc aagaaaaaga aatcatctca
    16081 tatatgagag aattgttaaa tagcaatgaa aaattagatt gtggtacggc ttttaaaatt
    16141 gcaaagaaat ttaatataaa tatagaaaaa atcggacaat tagccgatga aaatcacatg
    16201 agaattgata attgcgagtt ggggcaattt ggacatttag attttgaaaa agcaaagatt
    16261 gaagtgctta aaaaaataga acctagttta gatgaaaagc gtagaatttt ttgtaaagat
    16321 gcaagagata ttgctaaaga aggttgtgga cttaaaagta tgcgttcagc tttaaaaact
    16381 tataaggttg atgtaaagta ttgtcaactt ggttgtttta aagaaaaaaa aggtaagcaa
    16441 tttatagtaa gaacaaaaac ttggattgaa aatgcggatg gagatttgct ttttggtcga
    16501 ggaaaaacag aacttttaga acttatcgga caaacaggta gtttattaca tgcttctaaa
    16561 cttatgggga ttaattataa aaaagcttgg atgcatttac aaaccttaca aaaaaattct
    16621 caagaaattt tagttagcac aagacaagga cgctctaaag aatcaggaac aaaacttact
    16681 cctagagcta tggaattgat ggaaaattac tctattttgc aaaaagacat agaagaatac
    16741 gctaataaac gctttaaaga attgttttta aaaggaaaaa aataaatctt ctatcaaaaa
//
LOCUS       DAPIWJ010000032        16773 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.032, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000032 DAPIWJ010000000
VERSION     DAPIWJ010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16773)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16773)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16773
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.032"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            72..1343
                     /locus_tag="RJ259_000809"
     CDS             72..1343
                     /locus_tag="RJ259_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7366531.1"
                     /translation="MNDKTYKFHPNDTKMDKKIIQITEKSGFKAAVFSMAAMTMLGSV
                     VISSALPAINRHFEELLTQSGATLASSFTLAHLDILVRLVLTIPAIFVVILSPFAGIL
                     MDKFGKLKFILPAMVVWTLSGISGFFLNDIYAILTSRAIFGMATAFIMTGASALLGDY
                     YSRGGFNRRENALSLQGFFCAVGGAVFISIAGFVSSYSWRYPFLVYGLGILITLMAII
                     YLFEPRKFKFYNHTKIETKTNYWQFFPIYFIGFFIMVVYYISPTQLPYYIEEHLGLDP
                     KYIGISMSVSALCYGFFSLSYRYIIKFLSIKTIYVLTLFIVSCSFLLLFLVDSFFTVL
                     IALALLGMGGGIMLVNNTAYLFSICPENARSRAYGILASCIFLGQFLSPIISQPIVRQ
                     MGLVDAFLIWSIVIFIVCIVFLFLKQKPRIN"
     gene            complement(1371..2636)
                     /gene="secY"
                     /locus_tag="RJ259_000810"
     CDS             complement(1371..2636)
                     /gene="secY"
                     /locus_tag="RJ259_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HDV7366532.1"
                     /translation="MNRALTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQN
                     NALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLAATFPNIGKMKKERDSMQKYM
                     QIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMVEDLNMFIALCAISMLAGTMLLM
                     WLGEQITQRGIGNGISLIIFAGIVSGIPRAISGTVGQINSGEMNFLTAFAIFALILIT
                     IGVIIYIELGERRIPISYSRKVVMQNQNKRIMNYIPIKLNLSGVIPPIFASAILMFPT
                     TILQTSTNPYLQAINDFLNPNGYLFHVLTFLFVIFFAYFYASIVFNAKDIAENLKKQG
                     GFIPGIRPGEGTSSYLNEVASRLTLSGSIYLGLVATLPWVLVKFMGVPFHFGGTSVLI
                     VVQVALDTMRKIEAQIYMSKYQTLSAVGL"
     gene            complement(2636..3028)
                     /locus_tag="RJ259_000811"
     CDS             complement(2636..3028)
                     /locus_tag="RJ259_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HDV7366533.1"
                     /translation="MNLTKAAGSTHKTKRIGRGQGSGMGKTATKGGKGQTARKGYNEK
                     RGFEGGQQPLQRRLPKVGFTSKIQKPYVINVEKITAVKELSEITFESIKSVHKISKSV
                     NKIKLIGASAKDLVSKIKDENISVTGSK"
     gene            complement(3033..3476)
                     /gene="rpsE"
                     /locus_tag="RJ259_000812"
     CDS             complement(3033..3476)
                     /gene="rpsE"
                     /locus_tag="RJ259_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HDV7366534.1"
                     /translation="MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLV
                     GVGYGKAKEVPDAIRKAVDDAFKNIVEVKTKGSTIAHDVEVKYNASRILLKPASEGTG
                     VIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLKG"
     gene            complement(3488..3844)
                     /locus_tag="RJ259_000813"
     CDS             complement(3488..3844)
                     /locus_tag="RJ259_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HDV7366535.1"
                     /translation="MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYI
                     QAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFAKTLKVKKIEQAVFDRNGYVYHG
                     VIAALAESLRENGIRL"
     gene            complement(3854..4390)
                     /gene="rplF"
                     /locus_tag="RJ259_000814"
     CDS             complement(3854..4390)
                     /gene="rplF"
                     /locus_tag="RJ259_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HDV7366536.1"
                     /translation="MSRIGKQPIAIPAGVEVKLEGNLLKFKKGNLAKELDTKANVNVE
                     IKDNNILFSPKGEDRQSRAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKV
                     LELSLGFSHPINYDIPEGIEIVVDKNTIAVKGSDKQVVGQVAAQIREFRPPEPYKGKG
                     VKYSDERIIRKAGKTSKK"
     gene            complement(4469..4864)
                     /gene="rpsH"
                     /locus_tag="RJ259_000815"
     CDS             complement(4469..4864)
                     /gene="rpsH"
                     /locus_tag="RJ259_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HDV7366537.1"
                     /translation="MINDIISDSLTRIRNAGMRKLETTKLLHSKVVEALVGIFQAKGY
                     IESFNVIEEDKKKFINVVLKYDEKGKSVINELKRISKPGRRVYKGKDEIKRFKNGYGT
                     IVVSTSHGVLANDEAYKAGVGGEILCTIW"
     gene            complement(4874..5059)
                     /locus_tag="RJ259_000816"
     CDS             complement(4874..5059)
                     /locus_tag="RJ259_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001085694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HDV7366538.1"
                     /translation="MAKKSMIAKAARKPKFKVRAYTRCQICGRPHSVYRDFGICRVCL
                     RKMGNEGLIPGLKKASW"
     gene            complement(5061..5606)
                     /gene="rplE"
                     /locus_tag="RJ259_000817"
     CDS             complement(5061..5606)
                     /gene="rplE"
                     /locus_tag="RJ259_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HDV7366539.1"
                     /translation="MMRLKEKYNQSIKPALVKEFDIKNPMLIPVIEKVVISVGAGELA
                     KDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGFPVGVMVTLRKENMYAFLDK
                     LISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEYDKILRTHGMNISIVTTA
                     QNDKQAQKLLELIGVPFTKGK"
     gene            complement(5610..5843)
                     /locus_tag="RJ259_000818"
     CDS             complement(5610..5843)
                     /locus_tag="RJ259_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HDV7366540.1"
                     /translation="MAVKLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKI
                     AKKAIKPSEKNPNGGFINKEMPMDISNVAKVQE"
     gene            complement(5843..6211)
                     /gene="rplN"
                     /locus_tag="RJ259_000819"
     CDS             complement(5843..6211)
                     /gene="rplN"
                     /locus_tag="RJ259_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015106543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HDV7366541.1"
                     /translation="MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVK
                     KALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPV
                     GREVRYGGFMKIVSLAPEVL"
     gene            complement(6211..6462)
                     /gene="rpsQ"
                     /locus_tag="RJ259_000820"
     CDS             complement(6211..6462)
                     /gene="rpsQ"
                     /locus_tag="RJ259_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HDV7366542.1"
                     /translation="MAFKREIQGVVVKIAGEKTASVLVERKVVHPRYRKIVKRFKKYL
                     IHDERNEVKVGDTVVAVECRPLSKRKSFRLKSVLATGVE"
     gene            complement(6472..6657)
                     /gene="rpmC"
                     /locus_tag="RJ259_000821"
     CDS             complement(6472..6657)
                     /gene="rpmC"
                     /locus_tag="RJ259_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HDV7366543.1"
                     /translation="MKYTEIKDKTAAELATMLKEKKVLLFTLKQKLKTMQLTNPKEIS
                     QVKKDIARINTAINALR"
     gene            complement(6644..7069)
                     /gene="rplP"
                     /locus_tag="RJ259_000822"
     CDS             complement(6644..7069)
                     /gene="rplP"
                     /locus_tag="RJ259_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HDV7366544.1"
                     /translation="MLMPKRTKYRKMMKGRNRGYANRGTEFTFGEFALKATEAGRINS
                     RQIEAARIALTRFVKRQGKTWIRVFPDKPLTKKPLETRMGKGKGAVEEWVMNIKPGRI
                     IYEMAGVSEEMAREALTLAMHKLPFKTKFVTRESQNEIY"
     gene            complement(7072..7773)
                     /gene="rpsC"
                     /locus_tag="RJ259_000823"
     CDS             complement(7072..7773)
                     /gene="rpsC"
                     /locus_tag="RJ259_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HDV7366545.1"
                     /translation="MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLK
                     RKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNIN
                     IKEERKAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGA
                     EMARTEWYLEGRVPLHTLRAKIDYGFAEARTTYGNIGVKVWIFKGEVLHKGMQPEKTE
                     ESAPAKKPRRTRRGK"
     gene            complement(7773..8198)
                     /gene="rplV"
                     /locus_tag="RJ259_000824"
     CDS             complement(7773..8198)
                     /gene="rplV"
                     /locus_tag="RJ259_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HDV7366546.1"
                     /translation="MSKALIKFIRLSPTKARLIAREVQGMNAELAMASLKFMPNKGAK
                     YIANAISSAVANGGFEANEVIVKSCRVDAAAVLKRFRPRARGSASRIRKPTSHILVEV
                     AKAEVKSEEKKTVAKKTTTTKAPAKKTTSTKKATVKKES"
     gene            complement(8209..8490)
                     /gene="rpsS"
                     /locus_tag="RJ259_000825"
     CDS             complement(8209..8490)
                     /gene="rpsS"
                     /locus_tag="RJ259_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HDV7366547.1"
                     /translation="MARSLKKGPFVDDHVMKKVIAAKKANDNKPIKTWSRRSTITPDM
                     IGLTFNVHNGKSFIPVYITENHIGYKLGEFAPTRTFKGHKGSVQKKIGK"
     gene            complement(8492..9322)
                     /gene="rplB"
                     /locus_tag="RJ259_000826"
     CDS             complement(8492..9322)
                     /gene="rplB"
                     /locus_tag="RJ259_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HDV7366548.1"
                     /translation="MAIKTYKPYTPSRRYITGLSSEDITAKPSVRSLLVKLPAHAGRN
                     SYGRITSRHKEAGAKKLYRIIDFKRRKFGIEGKVEAIEYDPYRNCRIALIAYKDGEKR
                     YILQPRGLSVGDIVAAAESGLDIKPGNAMKLKNIPVGTIVHNVELKPGKGGQMIRSAG
                     AYAQLMGKEEKYVILRLASGEMRQVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIR
                     PQTRGSAMNPVDHPHGGGEGKKNSGRHPVTPWGKPTKGAKTRRKKASDKLIISRRKGK
                     "
     gene            complement(9324..9605)
                     /locus_tag="RJ259_000827"
     CDS             complement(9324..9605)
                     /locus_tag="RJ259_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HDV7366549.1"
                     /translation="MADITDIKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKAVLKE
                     YFGVTPKSINSLRMDGKIKRFRGRLGQRNNYKKFYVKLPEGVSLENTEA"
     gene            complement(9608..10222)
                     /gene="rplD"
                     /locus_tag="RJ259_000828"
     CDS             complement(9608..10222)
                     /gene="rplD"
                     /locus_tag="RJ259_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HDV7366550.1"
                     /translation="MSKVVVLNDKLEKAGELDLPSKYAEVNPHNLYLYVKSYLASLRA
                     NTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK
                     KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDLLDEK
                     TLLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSVLESITKEG"
     gene            complement(10219..10794)
                     /locus_tag="RJ259_000829"
     CDS             complement(10219..10794)
                     /locus_tag="RJ259_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HDV7366551.1"
                     /translation="MEYIVEKIGMSRTITNPSIAVTLLRVVNAKVCEVEGGKALVAYP
                     KGKASNKCVAGQQKKYNLSAEYNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGR
                     GYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTIKNE
                     VVSYDAENKILVVKGAVPGYNGAMGKIRIAK"
     gene            complement(10804..11115)
                     /gene="rpsJ"
                     /locus_tag="RJ259_000830"
     CDS             complement(10804..11115)
                     /gene="rpsJ"
                     /locus_tag="RJ259_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HDV7366552.1"
                     /translation="MERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKI
                     KRYTVLKSPHINKDSREQFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVRAMG
                     K"
     gene            complement(11314..12075)
                     /locus_tag="RJ259_000831"
     CDS             complement(11314..12075)
                     /locus_tag="RJ259_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HDV7366553.1"
                     /translation="MRINKFISHNTRYSRREADELIKQGLVKINNKIALLSDEVKFDD
                     KVFVKGKRVQKRTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDY
                     ASEGLLLLTDSPVIADALMHSDLEREYYLKVKGTVSKQVIEAMQNGLEIKNEKKGAHA
                     KTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGHFDLEVMDLKRVAF
                     GALDLGMLKAGKHRYLENGEYEKLRDFLKFNEIRY"
     gene            complement(12111..14105)
                     /locus_tag="RJ259_000832"
     CDS             complement(12111..14105)
                     /locus_tag="RJ259_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HDV7366554.1"
                     /translation="MNMDENKEINKNEQNPNSNSKNNKRYKYKNRRKKLADSLQNEND
                     TPKIDQNSNKENSENSENKTEKKKKKNRNLPSKLTGNEDWQIALAECIEANRISHENR
                     LHPLKYNNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMSFPDGTMHGVDII
                     IPDFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPLALGMISNKFEEH
                     GLKAERKWFRPVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKAGTIIHTGDFKID
                     QTPIDGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGPTFDQIFARTKGR
                     VIMSTFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGYIKLDRKIFIDAD
                     EVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPTDQVIISAKAIPGNEASV
                     SAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLTKPKFFLPVHGEYNHITKH
                     KETAMKCGIPERNIYLMSDGDQVELCQKYVKRIKTVKTGKVFVDNQINKQIADDVVID
                     RQKLADSGIVVIIAQIDKATKTLINKPRVFSYGLVADKHDHAFSKDMAEVLGQFFINV
                     KDEVLNDPRFLENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            complement(14074..14874)
                     /gene="rsmA"
                     /locus_tag="RJ259_000833"
     CDS             complement(14074..14874)
                     /gene="rsmA"
                     /locus_tag="RJ259_000833"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HDV7366555.1"
                     /translation="MVKAKKQYGQNFLIDKSVLAKIIQAIPKEMNNIIEIGPGLGDLT
                     QELLKISQVKAYEIDNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLV
                     ANLPYYVASHIILKALEDKNCLGLIVMAQREMAEKFCAKEGNSEFSSLGVLSAMICER
                     KILFDVDPQCFNPPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNL
                     KTYKAKVLEVLSTLGLKENIRPHEICVDLYLKIYDKLKDEYGRKQRDK"
     gene            14956..15492
                     /locus_tag="RJ259_000834"
     CDS             14956..15492
                     /locus_tag="RJ259_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HDV7366556.1"
                     /translation="MIICAGGNENFSFAKAIGIGLVESAFHLSQLCFKEKPSKLIFIG
                     TCGLYDKGEILEIYRSSHAFNVEFSKISHAFYTPAKYEICLEKENVSRETIKINSSNY
                     ICQNSKAAKEFSKLGFFAENMEAFSVLSVAKNLNIDAECILCATNFCNENAHEDFIKN
                     HQKAKENLEEYLKKYHYI"
     gene            15515..16585
                     /gene="rlmN"
                     /locus_tag="RJ259_000835"
     CDS             15515..16585
                     /gene="rlmN"
                     /locus_tag="RJ259_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HDV7366557.1"
                     /translation="MKELVNILDFLPEELGEKIKPMFRVKQIYQWIYQKYANNFSDMS
                     SLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPMKEEKIDA
                     EGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPY
                     ERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQM
                     NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGI
                     NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTI
                     RESKGLDISAACGQLKERAKEQ"
     gene            16582..16680
                     /locus_tag="RJ259_000836"
     CDS             16582..16680
                     /locus_tag="RJ259_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366558.1"
                     /translation="MTMLDIFEIIFITTVVIIGFGGIVFVVTKEKK"
     gene            complement(16694..16770)
                     /locus_tag="RJ259_000837"
     tRNA            complement(16694..16770)
                     /locus_tag="RJ259_000837"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(16734..16736),aa:Met,seq:cat)
BASE COUNT         4934 a         3159 c         2464 g         6216 t
ORIGIN      
        1 atataatttt aagtaatttt aaatacaaac cataattttt ggagtataat aaaataaaaa
       61 aggtaaaaat tatgaatgac aaaacttata aatttcatcc aaatgacaca aaaatggata
      121 aaaaaataat tcaaattact gaaaagtccg gatttaaagc agctgtgttt tctatggctg
      181 ctatgactat gctaggaagt gtggtcattt catctgctct gcctgctatc aacagacatt
      241 ttgaagaact tttaacccaa agtggcgcta ctcttgcttc aagtttcaca ttagctcatc
      301 ttgatatact tgttcgctta gttttaacca tccctgctat ttttgttgtc attttatctc
      361 catttgctgg tattttaatg gataaatttg gcaaattaaa attcattctt ccagctatgg
      421 tggtttggac tctttctggg ataagtggct ttttcttaaa tgatatttat gctatactga
      481 cttcaagagc tatttttggt atggcaactg cttttataat gacaggcgct tcggctttgc
      541 ttggggatta ttatagtcgt ggtggcttta atcgcagaga aaatgcttta agtcttcaag
      601 gatttttttg tgcagtaggg ggtgctgttt ttatttctat tgcgggattt gtttcaagtt
      661 attcttggcg ttatcctttt ttggtatatg gacttggaat tttaattacc ttaatggcta
      721 tcatttatct ttttgaacct agaaaattta aattctataa tcatacaaaa atagaaacaa
      781 aaacaaatta ttggcaattt ttccctatct attttatagg tttttttatc atggtagttt
      841 attatatttc gccaactcaa cttccttact atatagaaga acatttggga ttggatccta
      901 aatatatagg tatttcgatg tctgtatctg cactatgtta tggttttttc tctctaagct
      961 atagatatat tataaaattc ttaagtatta aaactattta tgttttaact ctttttatcg
     1021 tatcttgttc ttttttgctg ctttttttag tagatagctt tttcacagtt ttaatcgcct
     1081 tagctttgct tggaatgggt ggaggtatta tgcttgtaaa taatacggct tatctttttt
     1141 caatctgtcc tgaaaatgct cgctctaggg cttatggaat tttagcaagt tgtatatttt
     1201 taggacaatt tttaagtcct attatctctc aacctatcgt tagacaaatg ggtcttgtag
     1261 atgctttttt aatatggtca atagtaattt ttatagtgtg cattgtgttt ttatttttaa
     1321 agcaaaaacc tagaataaat tagcaagaaa aatcttgcta attttattta ttacaaacct
     1381 accgcactta aagtttggta tttactcata taaatttgag cttcaatttt tctcatcgta
     1441 tcaagtgcta cttgaactac aataagtaca gaagtgccgc caaaatgaaa aggcacaccc
     1501 ataaatttca ccaaaaccca aggtaaggtt gcaacaagcc ctaaataaat agaacctgat
     1561 aaagttaaac gagaagccac ttcgttaaga taacttgaag ttccttcacc tggacgaatt
     1621 ccagggataa aaccgccttg ttttttcaaa ttttctgcta tgtctttagc gttaaatacg
     1681 atagaagcat aaaaataagc aaagaaaatt acaaacaaga aagttagaac atgaaacaaa
     1741 taaccatttg gatttaaaaa gtcattaatg gcttgtagat aaggatttgt actagtttgt
     1801 aaaattgttg ttggaaacat caaaatcgca ctagcaaaaa tcggtggaat aaccccacta
     1861 agattgagtt taataggaat ataattcata atgcgtttgt tttgattttg cattacaact
     1921 ttacgagaat aagaaatagg aattcttctt tctccaagtt ctatataaat aatcacccct
     1981 atggtgatta aaatcaaagc aaaaattgca aaagcggtta agaaattcat ctcgcctgaa
     2041 ttgatttgtc ctacagttcc tgaaatcgct cttggaatac ctgaaacaat acctgcaaaa
     2101 atgattaaag aaataccatt tcctatacct ctttgtgtga tttgttcgcc aagccacatt
     2161 aaaagcatag ttccagcaag catagaaata gcacaaagtg cgataaacat atttaaatct
     2221 tccaccatta tagcccctgc accaccacga ccgtgcaagc tttgcaaacc tatagcaacg
     2281 cctatacttt gaaccaaagt aatcacaata gtcgcataac ggataatttg catatatttt
     2341 tgcatactat cacgctcttt tttcatctta ccaatatttg gaaaagttgc tgcaagaagc
     2401 tccataataa tagaagcagt aatataaggc ataataccta aagaaatgat agaaaagcgt
     2461 tcagccgctc caccactaaa aacattaaat aaacccaaag cattgttttg attgttatta
     2521 aaaaattccg caatcacatc agcattgacg ccaggaactg gcacataagc cagaacccta
     2581 taagcaaata aaaatgctaa ggtgattaaa atcttattcg tcaatgctct attcattatt
     2641 ttgatccggt gacactaata ttctcgtctt tgatttttga tactaagtct tttgcacttg
     2701 caccaattaa tttgatttta ttcacagatt ttgaaatttt gtgaacactt ttaatgctct
     2761 caaatgtaat ttcactaagc tcttttacag ctgtgatttt ttcaacattg atcacataag
     2821 gtttttgaat tttagaagta aaacctactt ttggtagtct tctttgaagt ggttgttgac
     2881 ccccttcaaa acctcttttt tcattataac cttttctagc agtttgacct ttaccccctt
     2941 tagtagcagt cttacccatg ccagaacctt gaccacggcc aattctttta gttttatgcg
     3001 ttgaacccgc tgcttttgtt aaattcatct tcttatcctt ttaacattgt taaagctttg
     3061 attgtagcac gaaccacatt agctgaatta tttgaaccca aagacttggt taagatgtct
     3121 ttaatacctg caagttccac gatagggcgt gtagaaccac ctgcgataac tcctgtacct
     3181 tcgctagctg gtttaagtaa aattctactt gcgttgtatt tcacctctac atcgtgagcg
     3241 atagttgagc ctttagtttt aacttcaacg atatttttaa acgcatcgtc aacagcttta
     3301 cggatggcat ctggaacttc cttagcctta ccataaccaa cacctactaa acctttgcgg
     3361 tttccaacga taactaaagc agtaaatcta aatcttctac cacctttaac aaccttagta
     3421 actctgccga tatcgacgat tacttcttca aattcttctc tattatattt ttccatcgat
     3481 ttacccctta tagcctaatg ccattttctc ttaaagattc agccaatgct gcgataacac
     3541 catgatatac ataaccattt ctatcaaaaa cagcttgttc tatcttttta acttttaaag
     3601 ttttagcaaa ttcagcagcg atttttttag caccttcttt atttgcttta acgccaagtt
     3661 tgcgtccatc aactgctgct aaagttacag cttttacatc atcaatcgct tggatatata
     3721 gagttctgtt tgatttaaat acagaaattc ttggaaaatt ttcacaacct gaaattttcg
     3781 ctctaattct tttttttctt ttgattctta aagttagttt tctttttaat acatttgctc
     3841 tcatattcta cccttacttc ttagatgtct taccagcttt gcggataatg cgttcatcag
     3901 aatacttaac gccttttcct ttatatggct ctggcggtct aaattcacga atttgagcag
     3961 caacttgacc tacaacttgt ttatcacttc ctttaactgc aatagtattt ttatccacta
     4021 caatttcaat tccttctgga atatcataat taataggatg agaaaaacca aggcttagtt
     4081 ctaaaacttt accttttaaa gctgccttat aaccaactcc attgatttca agagtttttg
     4141 aaaaaccttg agttaaacct acaacgatat tgtaagctaa agctctgtaa gttccccaat
     4201 aagctctact ttgtctgtct tcaccttttg gagaaaaaag aatattatta tctttaatct
     4261 caacatttac atttgcttta gtatcaagtt cttttgccaa atttcctttt ttaaatttaa
     4321 gcaaatttcc ttctaatttt acttctactc ctgctggaat agcaatcggt tgtttaccta
     4381 tacgagacat atttttcctt tttatttgtc taggatattt ctactttttt aaaagaatgg
     4441 atacccaatg ccataaaaag cagatttttt accaaatggt acataaaatt tcgccgccaa
     4501 cacctgcttt ataagcttca tcattagcta aaacaccatg acttgtgcta actacgatag
     4561 taccataacc atttttaaaa cgcttgattt catctttacc tttataaaca cgacgaccag
     4621 gcttagaaat tcttttaagc tcattgataa cactcttacc tttttcatcg tattttaaaa
     4681 ctacattgat aaatttcttt ttatcttctt caataacatt aaaactctca atatagccct
     4741 tagcttgaaa aattccaact aaagcttcta caactttaga atgtaaaagc ttggttgttt
     4801 caagctttct cattcctgca tttctgatac gagtgagtga atctgaaata atatcattta
     4861 tcatatttta tccttaccaa cttgctttct taagacctgg aatcaaacct tcgttgccca
     4921 tttttcttaa gcaaactctg caaattccaa aatctctata aaccgaatgc ggacgcccac
     4981 aaatttggca tcttgtataa gctctaactt taaatttagg cttgcgtgcc gcttttgcaa
     5041 tcattgattt tttagccatc ttactttcct tttgtaaatg gcacaccgat aagttctaat
     5101 aacttttgtg cctgtttgtc attttgtgct gttgtaacta tagaaatgtt cataccatga
     5161 gttcttaaaa ttttatcata ctccacttct gggaacatca actgctcatc aagaccgaag
     5221 ttatagtttc cgcgtccatc aaaaccatct ctacttaaac ctctaaagtc tttcaccctt
     5281 ggcaaagcaa tagaaattaa tttatcaaga aaagcataca tattttcttt tcttaaagtt
     5341 accattacac ccacaggaaa accttcgcga actttaaatc ctgcaactga ttttttagct
     5401 ttagtaatca cagccttttg tcctgcaatt aaagaaatag tatctgcaac attttgcaat
     5461 actttttgat ctttagccaa ctcaccagca cctacgctga taactacttt ttcgatcaca
     5521 gggataagca taggattttt aatatcaaat tctttaacca atgcaggttt aatgctttga
     5581 ttatattttt cttttaatct catcatcgct tactcctgaa cttttgccac attggaaata
     5641 tccattggca tttctttatt gataaaacca ccatttgggt ttttctcact cggcttaata
     5701 gcttttttag cgattttaca tccttcaact accactttaa gtgtttttgg atataccgct
     5761 aaaactttac ctgttttacc tttatcatcg cctgtgataa ccttaacgct atcacctttt
     5821 ttgattttta atttaaccgc cattataata cctccggtgc tagtgaaacg attttcataa
     5881 agccaccata tctaacttct ctgcccactg gcccaaagat acgagttccg ataggctctc
     5941 ttttgttgtc aagaataacc gcagcatttt catcaaaacg aatcaaagaa ccattatctc
     6001 tatgaatttc ttttttagtt ctaacgataa ccgcttttac cacttgacct tttttaactt
     6061 ttccatttgg taaagctttt ttaacagatg caacgattac atcacctacg gtagcgtatc
     6121 ttcttttgct accccctaaa accttgatac acattaattc ttttgcaccg ctattatcag
     6181 caactgcaag tcttgtaaaa ctttgaatca ttactcaact cctgtagcta atacagattt
     6241 taagcgaaat gattttcttt ttgaaagtgg tctgcattct actgcaacaa cagtatcacc
     6301 cactttaact tcatttctct catcatgaat tagatatttt ttaaagcgtt taacaatttt
     6361 tctatatctt ggatgaacca cttttctttc aaccaaaaca cttgcggttt tttcaccagc
     6421 gattttaaca acaacgcctt gaatttctct tttaaatgcc attttctatc cttatcttaa
     6481 agcgttaatt gctgtattta ttctagcaat gtcttttttt acttggctaa tctcttttgg
     6541 attagtaagt tgcattgttt ttagcttttg ttttaaagtg aataaaagca cctttttttc
     6601 ttttagcatt gttgcaagct cagctgctgt tttatcttta atctcagtat atttcatttt
     6661 ggctctctct tgtaacaaac ttagttttaa atggaagttt atgcatagct aaagtcaatg
     6721 cttctcttgc catttcttcg cttactcctg ccatttcata aatgatacga cctggcttga
     6781 tattcattac ccattcctca acagcacctt tacctttacc catacgagtt tctaaaggtt
     6841 tttttgtcaa aggcttatct ggaaaaactc taatccaagt ttttccttgt cttttaacaa
     6901 aacgagttaa agcgatacgc gctgcttcga tttggcgtga gttaatgcgt cctgcttcag
     6961 ttgcttttaa tgcaaattca ccaaaagtaa attctgttcc acgattagca taacctctgt
     7021 tacgcccttt catcattttg cgatatttag ttctttttgg cattaacatg attatttacc
     7081 ccttcttgtg cgtcttggct ttttagctgg agcactttct tcagtttttt caggttgcat
     7141 acctttgtgc aatacttcac ctttaaagat ccatacttta actcctatgt ttccataagt
     7201 agttctagct tctgcaaaac cataatcgat ttttgctctt aaagtatgaa gtggaacgcg
     7261 tccttcaaga taccattctg ttcttgccat ttcagcaccg cctaaacgac cggaaactga
     7321 aactttaatt cctttagcac ctgctttttg cgcaccttgg attacttttt tcattgctct
     7381 tctaaaagca attctttttt caagttgagt tgcaacactt tcagcagcaa gttgagctga
     7441 agctcctgct tttctttctt ctttgatatt gatatttaca tctttaccga ttaaatcttg
     7501 caattctttt cttaaattat caacatcact acctttttta ccgatgatga tacctggtct
     7561 tgcagcaact acagtaacgc gaagtttttt agcagttctt tctactaaaa tttggctaat
     7621 tcctgcgtaa taaagttttc tttttaagaa agctctgatt ttgtaatctt caccgatatt
     7681 ttctactaaa tttgctttag ttggaaacca tcttgattcc cagtttctat tgattcctag
     7741 tcttagacca attggattaa ctttttgtcc cattagcttt cctttttcac tgttgctttt
     7801 ttagtgcttg ttgttttttt agctggagct tttgttgtag tagttttttt agctactgtt
     7861 tttttctctt cagatttcac ttccgctttt gccacttcta ctaaaatatg tgaagttggt
     7921 tttctaatac gacttgcact tcctctagct cttggtctaa atctttttaa taccgcagct
     7981 gcgtcaacac gacaactttt tacaatcact tcgtttgctt caaagccacc atttgctact
     8041 gcgcttgaaa ttgcgtttgc aatgtatttt gcacctttat ttggcataaa ttttaaacta
     8101 gccatagcta attctgcatt catcccctga acttctctag caatcaatct tgctttagtt
     8161 ggagataatc ttatgaattt aattaatgct ttactcatat cttatccctt acttaccaat
     8221 tttcttttgc acagagcctt tatgcccttt aaatgtgcgt gttggagcaa attcaccaag
     8281 tttataaccg atgtgatttt cagtaatata aaccggaatg aagcttttgc cattatgaac
     8341 attaaatgta agtcctatca tatcaggagt aattgtgctt cttcttgacc aagttttaat
     8401 tggtttatta tcattagcct ttttagcagc gatgactttt ttcattacat gatcatcaac
     8461 aaaaggacct ttttttagtg atctagccat cttactttcc ttttcttctt gaaattatta
     8521 gcttatcgct agccttttta cgacgagttt tcgcaccttt ggttggttta ccccacggag
     8581 ttactggatg acggcctgaa tttttcttac cttcaccccc accgtgcggg tgatctactg
     8641 ggttcattgc agaaccacga gtttgcgggc ggatacctct atggcgattt ctacctgctt
     8701 taccgatagt tacattagcc cattcttcat ttccaacttc gccgatactt gccatacatt
     8761 cagctaaaac ttgtctcatt tcgccacttg caagtcttaa aataacatat ttttcttctt
     8821 tacccataag ttgtgcataa gcacccgcag aacgaatcat ttgaccgcct ttacctggtt
     8881 ttaactcaac attatgaaca atagtaccca caggaatgtt tttaagtttc attgcattac
     8941 ctggtttaat atcaagtccg ctttcagcag ctgcaacgat atcaccaacg cttaatccac
     9001 gtggttgaag aatatatctt ttttccccat ctttataagc aatcaaagca attctacaat
     9061 ttctgtatgg atcatactcg attgcttcta ctttgccttc tataccgaat ttacgacgtt
     9121 taaaatcaat aattctgtaa agttttttag cacccgcttc tttatgacga cttgtaattc
     9181 ttccatagct gttacgaccc gcgtgtgctg gaagtttaac aagtagtgag cgtacacttg
     9241 gtttagctgt aatatcttca gaacttaaac ctgtgatata tcttctactt ggagtatatg
     9301 gtttataagt tttaattgcc atcttaagcc tccgtatttt ctaagctaac accttcaggt
     9361 agcttaacat agaatttttt gtaattgttt ctttgaccta aacgacctct aaaacgctta
     9421 atttttccat ccattcttaa ggaattgatg ctttttggag ttacaccaaa atactctttt
     9481 aaaaccgctt ttaagcctgt tttagtcatt tttggcgaag tttgaataac tacgacacct
     9541 tgctcttgca aattcaaact tttttctgtg taaagtatag tctttatatc agtaatatct
     9601 gccataatta tccctctttt gtaatagatt ctaacactga tttttccata ataacagcat
     9661 taaatacaga tactaaataa gcatttactt cagttacatc aactacatag caatttgcta
     9721 aatttctgta agctaaaagt gttttttcat ctagtaaatc tttaacgatt aaagcatctt
     9781 tgacgccaag ttttttaatc acagcgtttg catcttttgt tttaccactt tcaatagcca
     9841 aagaatcagc agtaaataac acacctttag ctgctttatc tgctaaagct ctttcaagcg
     9901 ccaatctttt ttgtttttta tttacttttt ggaagtagtt tctttcattt gttggaccaa
     9961 aagcaaccgc accgcctacc caaacgttag ttcttgttga acccgctcta gcaccgccac
    10021 gacctttttg tctccaaggt tttttaccac caccacttac atcacttcta cctttagtat
    10081 gagctgtatt tgctcttaaa cttgcaaggt aagattttac atacaagtaa agattgtgtg
    10141 gatttacttc cgcatatttt gaaggtaaat caagttcacc tgctttttct aatttatcat
    10201 ttaaaacaac tactttactc attttgcaat ccttatttta cccatggcac cattataacc
    10261 tggtactgca cctttaacta ctaaaatttt attttcagca tcataagata caacttcgtt
    10321 tttaatggtc actttagtat ttccatagtg tcctgccatt ttcatacctg gttgaacacg
    10381 acctggccat tctctattac caatagatcc atggcgtcta tgaaatctcg aaccgtgact
    10441 tgctggaccc cctgcgaagt tatgtctttt cataacaccg ctataacctc tacctttagt
    10501 gttaaagctt acttttaaaa tttttgcttc atttaatgga gtttcatcta aatctcctgc
    10561 ttcagtattt gctacttcta aagtcgcaaa tctattgtat tctgcagaaa gattgtattt
    10621 tttttgttgt cctgcgacac atttattact tgctttacct tttggatatg ctactaaagc
    10681 ctttccgcct tcaacttcac atacttttgc atttacaact cttagtaaag ttacagcgat
    10741 acttggatta gtaattgttc tgctcattcc aattttttct acaatatatt ccatatctta
    10801 tccttactta cccatagctc ttacttcaac gcttacttct ggcgctaaat caagcttcgt
    10861 taaagaatca actgtatctg gagtcgctgc tactatatct agcatacgcg cgtgaattct
    10921 tatttcaaac tgctcacgag aatctttgtt aatgtgtgga gattttaaaa ctgtatagcg
    10981 tttgatttta gtaggcattg gtatcggacc tctaatatcc gcacctgttc ttttaacagc
    11041 ttctacgatt gctgcaactg ttctgtctag tactcgatgg tcataagctt ttagcttaag
    11101 cctaattctt tccataatat ttcctttaaa aagaactcgt tagttaaaaa ctaaccaaat
    11161 ttataaaaat tgaaatgaga gtatataaaa tcttgttttc aaagtcaagg aatttgatga
    11221 aatttttcta ttattttcct tttaaaaagg ataaaaatag aatttttaga atttaaaaat
    11281 tatcattatt ttttaaattt ttgtatataa tggtcaatat cttatttcat taaattttaa
    11341 aaaatctctt aatttttcat attcgccatt ttctaaataa cgatgttttc ccgccttcaa
    11401 cataccaaga tctaaagccc caaaagcaac acgcttaaga tccatgactt caagatcaaa
    11461 atgtccaaaa aagcgtctaa gctctctatt tttaccttca tttataacca ctctaagctt
    11521 agtatagcct ccacttgatc caaaaatttc aaagtctata aaaggagcaa aactcataga
    11581 ggtaatttta gtttttgcat gtgcgccttt tttttcattt ttaatctcaa gtccattttg
    11641 catggcttcg atgacttgtt tgctcaccgt gcctttaact ttaaggtagt attctctttc
    11701 taaatcgcta tgcattaaag catcggcaat cacaggagaa tctgtaagca aaagtaagcc
    11761 ttcacttgca taatccagcc tacctacgct aagccaagta ctaaattgtc ttggcaaggt
    11821 atcatatata gtttttcttc cacgatcgtc ttttttactg acaatttcac ctttttgttt
    11881 atggtagatt atcacgctaa attgcgttct tttttgtact cttttacctt taacaaaaac
    11941 tttatcatca aatttaactt catcgcttaa aagggcaatt ttgttgttta tttttactaa
    12001 gccttgtttg ataagttcat cggcttcacg gcgtgaatag cgggtgttat gggatataaa
    12061 tttattaatt ctcatttgat cttccttaaa aagggcgttt ttgccctttt ttacattaca
    12121 aaaatagttg gaactatggt tgggtatttt ttaatctttc taaagatgtg ttttcttaaa
    12181 acttggcgga tttgattttc taaaaatctt ggatcattga gtacttcatc tttaacattg
    12241 atgaaaaatt gtcctaaaac ttcagccata tctttgctaa aagcatgatc gtgtttgtca
    12301 gctactagcc catagctaaa tactcttggt ttgttgatca gtgtttttgt agctttgtca
    12361 atttgtgcga taataactac tataccacta tctgcaagtt tttggcgatc tataactaca
    12421 tcatcggcga tttgtttgtt gatttgatta tctacaaaaa ctttacctgt ttttacggtt
    12481 tttatgcgtt tgacatattt ttggcaaagt tctacttgat cgccatcact cataagataa
    12541 atatttcttt cagggatacc gcacttcatc gctgtttctt tgtgtttggt gatgtgattg
    12601 tattctccat gaactggtag gaaaaattta ggcttagtaa gggttagcat aagcttttgc
    12661 tcttctatac tagcgtgtcc gcttacatga atttcactaa attcttgata cgctacttta
    12721 gctcctgctt ttaaaagata gtcaagcacc gcagaaacac ttgcttcatt tcctggtatg
    12781 gctttagctg aaataatcac ttgatctgta ggtttgattt ttataaattt atgctcatca
    12841 gttgccattc tataaagcgc actcatggtt tcgccttgac ttcctgtagt tacgataagc
    12901 acttcattgt ctttatattt gcttacttca tcagcatcga tgaaaatttt tctatcaagt
    12961 ttgatgtagc ctaattccat agtggtataa agatttcttt ccatagaacg accgatcaca
    13021 caaacttttc taccgtattt taaaccataa gtgatagctt gataaacgcg gtggatatta
    13081 gaactaaaag tactcatgat caccctgcct ttggtacgtg caaagatttg atcaaaagtt
    13141 ggccctacgg agctttcact ttttgtataa ccttctttgt acgaatttgt actatcgctt
    13201 aaaagacata aaaccccttc ttctccataa tgtgccaaac gtcctaagtc tgttggatag
    13261 ccatcgattg gagtttgatc aattttaaaa tcacctgtgt ggataatcgt tcctgctttt
    13321 gttttgatcg caagcgctga agcatcaatg atagaatgcg tgatgtggat ccactctata
    13381 tcaaattcgc ctatctcata aacacggcgt ttttctacag ggcgaaacca tttgcgttct
    13441 gcttttaagc catgttcttc aaatttgttt gaaatcattc ctaaagccaa aggtgtagcg
    13501 tagataggaa attggaattc tttaaagaaa taaggcactg caccgatatg atcttcgtgt
    13561 gcatgagtga tcactatacc acgaatttta tctttaattt ttcttacata gtcaaaatca
    13621 gggatgataa tatctacccc atgcatagtt ccatcaggaa aactcatacc tatatctact
    13681 ataattgcat ctttattggt ttcaaaaaca ctgatatttc caccaatttc tcctaaacct
    13741 cctaaaggag tgatgcggat tttatgctcg ctagaattat tatattttaa agggtgtaag
    13801 cggttttcat gtgaaatacg gttagcttct atgcattctg caagagcgat ttgccaatct
    13861 tcattacctg tgagttttga aggaagattg cgatttttct tctttttttt ctcagtttta
    13921 ttttctgagt tttcagaatt ttccttgttg gaattttgat caatttttgg agtatcattt
    13981 tcattttgca aagaatcagc taattttttt ctacgatttt tatatttata gcgtttattg
    14041 ttttttgaat ttgagttcgg attttgttcg tttttattta tctctttgtt ttcgtccata
    14101 ttcatccttt aatttgtcat aaattttaag gtataaatca acgcaaattt catgtggtct
    14161 gatgttttct tttaagccaa gagtgcttaa aacttctaaa acttttgctt tatatgtttt
    14221 taaatttcct aagagttgtt ttctaggagc tttaaaacaa tcttttagaa aatttttgaa
    14281 attttctatt tcgcaaagtt catcaaaatc cttagtttta atcaaactca tcaccgctga
    14341 cataactttt ggtggaggat taaaacattg tggatcaaca tcaaaaagta tttttctttc
    14401 gcaaatcatt gcacttaaaa cacctaagga agaaaactca ctatttcctt ctttagcgca
    14461 gaatttttca gccatttccc tttgtgccat tacaataagc cctagacaat ttttatcttc
    14521 taaagctttt aatataatgt gacttgcaac ataataaggc aaatttgcaa ccaaaaaata
    14581 tggtttttca tcaagactag gattaaaagc ttcgcttgcg tcttgatgga tcaagttaaa
    14641 ttttccacat tcaagttctt tttgaaattt cttttttaaa ataggtatga gatcattatc
    14701 gatttcataa gcttttactt gagaaatttt taaaagttct tgcgttaaat cacctaagcc
    14761 aggcccaatc tcaatgatat tgttcatctc tttgggtatg gcttggatga tttttgctaa
    14821 tacgctttta tcgattaaaa aattttgtcc gtattgtttt tttgctttaa ccataagaaa
    14881 taattttatc taaaaattct taattaagtc tttttaggta gaattatttt ttgtaaaaat
    14941 ttcataagga tcaaaatgat tatttgtgcg ggtggaaatg aaaatttttc ttttgcaaaa
    15001 gctataggca taggtttggt tgaatcagct tttcatttga gtcaactttg cttcaaagaa
    15061 aaaccatcaa aacttatatt tataggaact tgtgggcttt atgataaggg agagatttta
    15121 gaaatttata gaagttcgca cgcttttaat gtagaatttt ctaaaatttc acatgcattt
    15181 tatactcctg caaaatatga aatttgctta gaaaaagaaa atgtttctcg tgaaacaata
    15241 aaaatcaatt cttcaaatta tatttgtcaa aattcaaaag cggcaaaaga attttcaaaa
    15301 ttaggttttt ttgcagaaaa tatggaagcc ttttctgttt tgagcgtagc taaaaattta
    15361 aatattgatg cagagtgtat tttgtgtgca acaaattttt gtaatgaaaa cgctcacgaa
    15421 gattttataa aaaatcatca aaaggcaaaa gaaaacttag aagaatactt aaaaaaatat
    15481 cattatattt aaaaattcaa aaaggaaaat aattttgaaa gagcttgtta atattttaga
    15541 ttttttacct gaagaattag gagaaaaaat caaaccgatg tttcgcgtga aacaaattta
    15601 tcaatggatt tatcaaaaat atgccaataa tttttccgat atgtcaagtt tgccaaaaga
    15661 tttgcgttta gaacttgcgc aaaattttca tttttctcct gtaaaatgcg ttaaaaatga
    15721 gcaaagtaaa gatggaagta taaaatatct ttttgaactt atcgatggtt taagggtaga
    15781 aagtgtgctt ttgcctatga aagaagaaaa aatagacgca gaaggcaaaa gaatttctca
    15841 tgcgagatat actatctgtg tttcttctca agtaggttgt aaaagtggat gtagtttttg
    15901 tcttactgcc aagggtggtt tgaaaagaaa tttaagtgca ggtgagatag tcggacaaat
    15961 tttatggatc aaaaaacaaa acaatatccc ttatgaacgc cgtgtaaata tagtatatat
    16021 gggtatgggc gagcctttgg ataatcttaa aaatgtttct aaagcggtaa aaattttagc
    16081 gcaaaatgag ggacttgcta taagtcctcg ccgtcaaacc atcagtacta gcggtttggc
    16141 aaaacaaatc aaagaattag gtcaaatgaa tttaggtgtt ttacttgcta tatcattgca
    16201 tgcggttaat gatgagcttc gaaccgaact tatgcctatc aataaagctt ataatatcgc
    16261 tgcgattatg gatgcggtgc gtgaatttcc tatagatcaa agaaaaagag tgatgtttga
    16321 atatctttta attgatggta tcaatgataa gcttgaacac gctaaagaat tagtcaagct
    16381 tttaaatggc attaaagcca aagtgaattt aatactcttt aatccacatg aaggaagttt
    16441 atataaacgc cctagtttag aaaatgcgat taaattccaa gatttactaa gtaataaagg
    16501 tgtaacttgt actataagag aaagtaaagg acttgatatc tcagctgctt gtggacagct
    16561 taaagaaagg gcaaaagaac aatgacgatg ttagatattt tcgaaatcat ttttataaca
    16621 actgttgtaa ttataggttt tggtggaatt gtttttgtag taacaaaaga aaaaaaataa
    16681 ttattacatt taatggtgtc aagggggaga cttgaactcc cgacctccgg cttatgagac
    16741 cagcgctcta accagctgag ctaccctgac taa
//
LOCUS       DAPIWJ010000033        16723 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.033, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000033 DAPIWJ010000000
VERSION     DAPIWJ010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16723)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16723)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16723
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.033"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..377
                     /locus_tag="RJ259_000838"
     CDS             <1..377
                     /locus_tag="RJ259_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366559.1"
                     /translation="IYANLIQDPSNKNLLEQLKNKNTNLYAIFLLKENINDFNNTTLQ
                     NELKQIYNNAQTNTLLKNIIALSLGDKSIFLKNYDKLLEAYKLLEQNKIEEANVLLSQ
                     IKENSSLNQIAKNLKHYQGITQ"
     gene            374..1372
                     /locus_tag="RJ259_000839"
     CDS             374..1372
                     /locus_tag="RJ259_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7366560.1"
                     /translation="MKKIFLTLFCLIFLCACGTKRQYFEPKQTDGDLSHNSNLKSKIV
                     DWNLVSAKLSNNTTILKNNISIDKFKLPKNYMLLAYQDGEYFTADNNGNLKIFDNSYN
                     EIYNFQFDASVVGVASNGDDLALVLANNTIVLANRSLGIKFSQTLTSAPAQDSRTANP
                     IFLDNIIVYPTLDGKILILSRNNLQIIKDVVISAENFFNNVIHLSVIGDKLIAATAKK
                     IIVVSPARTLYLDADIKDVALSDDGIFILEKDGTIIKTDYNLRKIAEKKFEFAIFVKS
                     NIYNNYLYIFEKTGYLIKMNLNLDNAQVFKLSEAVDKISFMGNGKFYYGDKILDLL"
     gene            1369..1659
                     /locus_tag="RJ259_000840"
     CDS             1369..1659
                     /locus_tag="RJ259_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tram-like protein"
                     /protein_id="HDV7366561.1"
                     /translation="MIKILEQTIKALKLNLKPYDLSMLTRKKSYICAKDQNNILFMYT
                     GKTKFLMKDALFLENLAQQININNKYFFSMASLCSKAKNHLEMKGFNIYVAL"
     gene            1646..2275
                     /locus_tag="RJ259_000841"
     CDS             1646..2275
                     /locus_tag="RJ259_000841"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HDV7366562.1"
                     /translation="MLLCDIGNSNANFLDDNKYFTLNIDQFLEFKNEQKIFYINVNEH
                     LKEHLKNQKNFINLEPYFLFDTIYQGLGIDRIAACYTIEDGVVVDAGSAITIDIISNS
                     IHLGGFILPGIANYKKIYSHISPRLKSEFNTQVSLDAFPQKTMDALSYGVFKGIYLLI
                     KDAAQNKKLYFTGGDGQFLANYFDHAIYDKLLIFRGMKKIIKENPNLLY"
     gene            2394..3740
                     /locus_tag="RJ259_000842"
     CDS             2394..3740
                     /locus_tag="RJ259_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HDV7366563.1"
                     /translation="MSQQEFDVLVIGAGISGAALFYELARYTNIKNIALIEKYNTAAT
                     LNSKGTSNSQTIHCGDIETNYTLEKARKVKRTADMIVKYGLMQNAQNNFMFSHQKMAL
                     AVGDIECDYMKKRYEEFKELYPYIKFFDKAKIKQIEPKVVLGEDCNQDRPENICAMGV
                     ESGEVFTTVDFGKMSINLIEQAQKQNKNTFVAFNQEIIHIEKKDDIFILKTSNHQEYH
                     AKSVVVNAGAHSLYLAHKMNLGMDKSCWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAA
                     LHGDPDLLADMNTRFGPTALVIPKLERYHGLKSVPEFFEALKLDKTVLKVTFNMFKDA
                     TIRNYIFYNYLFELPFVDKSLFVKDAKKIVPSLKASDIYYAKGFGGVRPQVIDKTKGE
                     LMLGEASITETPGIIFNMTPSPGATSCLGNAERDAKLVCNYLGMEFNEDKFSSELL"
     gene            3789..5231
                     /gene="pyk"
                     /locus_tag="RJ259_000843"
     CDS             3789..5231
                     /gene="pyk"
                     /locus_tag="RJ259_000843"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDV7366564.1"
                     /translation="MLKKTKIVATVGPASEKEEILRQMIINGVNVFRLNFSHGTHEYH
                     KKNLDTIRRVAKELHTRIGILQDISGPKIRTGELKEPFELKKGDRLDFYRETILGEKI
                     AQNHYKISINQKSILDMLKIDEYIYLYDGSIRAKVVNIDNQKIETIIENDGFLNSNKG
                     INFPNTKINIDVITQKDKNDLLWGIKNEVDFLAISFVQNAHDIDEVREILAQNNAKIS
                     IFAKIEKFDAVENIDEIIKSSDGIMVARGDLGIEVPYYKVPNIQKEIIQKANNASKPV
                     ITATQMLFSLAKSKTATRAEISDVANAVLDGTDAVMLSEESAVGIDPANAVDIMCQTI
                     IETEKRYPYNKFNDFNDLDNTDKIMRSSAHLATDLNADAIFSLTSSGKSAIKIARYRP
                     NIEIIAVGHSEKTLNSLSIVWGVNPAILVNKSNELTELLKDSVRSSVEKGFMDEDKCY
                     LLTAGFPTGVEGTSNLIRILNKEQIAYYLQ"
     gene            5329..5964
                     /locus_tag="RJ259_000844"
     CDS             5329..5964
                     /locus_tag="RJ259_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366565.1"
                     /translation="MQVNTFSNIASMARTQVSNKKADDAKENTKDKNVQSANSSKDVD
                     KNTLEKLNALGGKGITQIYLVQFQQQTMNAVIGSSNAQTGLDSLLNGANLDTAKSILT
                     NIDFASLGYSSKNPLDMNTDELQQLVSEDGFFGVENTANRIADFVIKGGGDDVEKLKK
                     GLEGMKKGFEQAEKMWGGELPQISQNTIDAALKKVSDRIDELGGKTLDLQA"
     gene            complement(5995..8457)
                     /gene="pflB"
                     /locus_tag="RJ259_000845"
     CDS             complement(5995..8457)
                     /gene="pflB"
                     /locus_tag="RJ259_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein PflB"
                     /protein_id="HDV7366566.1"
                     /translation="MAEQEDIILEKPEDGLNQPRLDESLEGFKGQEGQAPEDEEFASL
                     PEELPQENSESGFKFTRESAPEDVSTFEEVESQEPMPWYKDRKFMSLVGLSLGIICIL
                     VFTLFYLTFSEGKIKPDIIASKPLEQPVIMPDESYKYNDMQRIDGMIQKANALYLKGE
                     VEQALKVYEQVAVYNESLSNYNLGVSQMNENKFQEAFESFKKAIANGEKQSVAAINAA
                     VCALKLNDKEKFRYYIDLAQVYLPKEGKSKLYDYYLSLINYYKGYYPEALQMLQRTDV
                     EPYSDVAKYLSAKIYAKMDFDSKAIQQLNSQGNFESSLSLGLLYARIGEYAKAKVALS
                     TAMKIERDFNQSLAALTLVDIKTGNYQDMLARLQNSYDNDKDRYKILDTYKIQVRLNK
                     DLFNIAVAQNSFSKDLLKKQKDQFDLLFYFAPYQVFDSKQAALYIKKANVTDFVDDST
                     DAGIYLNISKALSSTNVKIANIINYALNQKLRLANQEFQKLIKDYPEHSILHYNLALT
                     YAQMQNYELAYKHFSSSYHLNPKNYLAGAFAMFCAKLIDIDTTKLYNEILDNIAADSN
                     FKANMQKSMLFLVNNNYISMLPYLDETKKDTPLSLIFEAIVAKNNNLNNQVDVKIAKL
                     RSELPEDILANILYFNSLNSNLNIKEYAQNAQIHFKNLKLDYRSVFGGPNIAREFYVN
                     LMHIAGLLNLERQKFKELINVSGAKDEGILQTLAYLDIFAQQYEEAYALYNSLIDDYG
                     AKDTKTLFLAAVAAVGANNPNSAIALLQLSKLTDKNNKESKAALGMLYQEVKNYEAAI
                     SQYKTLPNNFKSEFFTFDINNN"
     gene            complement(8467..9702)
                     /gene="serS"
                     /locus_tag="RJ259_000846"
     CDS             complement(8467..9702)
                     /gene="serS"
                     /locus_tag="RJ259_000846"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HDV7366567.1"
                     /translation="MLDLKNLQNNFDEVAKKLKNKKVDENILKKLAELFASLKKEKIA
                     LEEFQAFQNKFSKELATAEDKESLKAKLSENKSKINEQSAKVNALENELEEIAHAIPN
                     IPDECVPVGEDENENVELKKVLNPPSFDFTPKEHFELGESLNWLDFMRGVKISQSRFC
                     VLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKVDD
                     EDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQF
                     EKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEV
                     WLPGQNKYREISSVSNCRDFQARRAKIRYKNEQGKNELVHTLNGSSLAVGRTLVAIME
                     NYQDKEGKIHIPDVLKKYF"
     gene            complement(9713..10672)
                     /gene="trpS"
                     /locus_tag="RJ259_000847"
     CDS             complement(9713..10672)
                     /gene="trpS"
                     /locus_tag="RJ259_000847"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HDV7366568.1"
                     /translation="MRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAM
                     TSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE
                     RAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKV
                     NNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFSSEKTLKKQISSIVTDS
                     TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKE
                     AREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL"
     gene            complement(10669..11166)
                     /locus_tag="RJ259_000848"
     CDS             complement(10669..11166)
                     /locus_tag="RJ259_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HDV7366569.1"
                     /translation="MMKAKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN
                     QKVSEIFEQKGENFFREQEQKMADFFSSCEKACIATGGGFVNVSNLEKAGFCIYLKAD
                     FEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEI
                     KKVIK"
     gene            complement(11153..12535)
                     /gene="der"
                     /locus_tag="RJ259_000849"
     CDS             complement(11153..12535)
                     /gene="der"
                     /locus_tag="RJ259_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HDV7366570.1"
                     /translation="MQSIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQI
                     HIHSKKAMLIDSGGLDESDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFY
                     SLKKLGKPIALVINKVDNKKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFL
                     HEEFLIPDEEENLEDFLEYYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQ
                     ERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSH
                     SQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRF
                     KFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRAHPLPHD
                     YGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIASR
                     KKGSKENDES"
     gene            12637..13569
                     /locus_tag="RJ259_000850"
     CDS             12637..13569
                     /locus_tag="RJ259_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDV7366571.1"
                     /translation="MLKVIKHNLGIYFMILACLDFALMGACAKILSKEMSSIEIMFFR
                     NIIGIFFIVYLLKRSKAHKEGGYFWLLVFRGVVGTLSLYMFFYNVSNITLGGAFAFQK
                     TAPIFITLIAFVVFKENIGIKGWIGILIAFGGVLLIAQPWAHNLNHSGFDLKNSVIGI
                     TSGFLAALALTSVRELRKSYTTEQIAFSFILLGTLMPLISMISAEFFEPQHLDSLHLD
                     FILAPFVMPSLTAWLIIAIMGTLGTIYQIHVTKAYGIAKQAGVVAGVSYLDVVFSMIV
                     GIILGDNLPSTMVFLGIIGIIFGGLILVKNKGKK"
     gene            13566..14381
                     /gene="kdsA"
                     /locus_tag="RJ259_000851"
     CDS             13566..14381
                     /gene="kdsA"
                     /locus_tag="RJ259_000851"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HDV7366572.1"
                     /translation="MKKMILIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFD
                     KANRTSINSFRGPGLEEGLKILQSVKDEFGMKILTDIHESNQANPVSEVADVLQIPAF
                     LCRQTDLLVAAAKTKAKINIKKGQFLNPSDIKYSVKKVLQTRGIEDEGYEAAQRNGVF
                     VAERGASFGYGNLVVDMRSLVIMREFAPVIFDATHSVQMPGAAGGSSGGKSEFVEPLA
                     RAAAAVGIDGFFFETHINPCEALCDGPNMLNLTRLKNCVNTLLEIQNIIKENK"
     gene            14378..14842
                     /locus_tag="RJ259_000852"
     CDS             14378..14842
                     /locus_tag="RJ259_000852"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HDV7366573.1"
                     /translation="MNIIEGKLNLDSNTKIAIINARFNHIITDRLVEGAKDAFLRHGG
                     KEENLSLILVPGAFELPYALKKAIESKKFDAICCVGAVIRGSTPHFDYVSAETTKGIA
                     NVSLNHNIPVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEL"
     gene            14842..15240
                     /gene="nusB"
                     /locus_tag="RJ259_000853"
     CDS             14842..15240
                     /gene="nusB"
                     /locus_tag="RJ259_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HDV7366574.1"
                     /translation="MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNF
                     TLNLYNGILDNLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTDTPSAIVIN
                     EAIELAKELANDNSPKFINGVLDALIKAKK"
     gene            15237..16076
                     /gene="pyrF"
                     /locus_tag="RJ259_000854"
     CDS             15237..16076
                     /gene="pyrF"
                     /locus_tag="RJ259_000854"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HDV7366575.1"
                     /translation="MKLCVALDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFI
                     EELKKVDDFKIFLDLKFHDIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLS
                     KFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKK
                     IKEHTSSNFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAV
                     CEKILNKIHRKNISENDIEQNYEVIQQKEWDMCNHFEEWIKTQPDKEHALKEFYAKCG
                     IKY"
     gene            16073..>16723
                     /locus_tag="RJ259_000855"
     CDS             16073..>16723
                     /locus_tag="RJ259_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366576.1"
                     /translation="MNYQQLECDYFNLYNQFLSVDFQISLFEKDHKGLIKDFIFFYYQ
                     ILKQKDLSYLLEVRNKISLKVYNYMQEHSTSPKDLSLICLRENKHIEFFQIFYKALAY
                     FVAFRKKLDGEQKIKNLISNINDCFGYHFLNSDFNNLQNFQKSDLFTLPEKHLKYFHF
                     AMIHLCFMVLNPLNFKDSNRHLDKAINYLVDGTFEIYELIFKEYFLLFSKDKELKDE"
BASE COUNT         5957 a         2654 c         2442 g         5670 t
ORIGIN      
        1 aaatttatgc caatctaata caagatccta gcaataaaaa tcttttagaa caacttaaaa
       61 ataaaaatac caatctttac gctatctttt tactaaaaga aaatattaat gattttaata
      121 atacaactct ccaaaatgaa ctaaaacaaa tttataataa tgctcaaaca aacactttac
      181 ttaaaaatat tattgcatta tctttagggg ataaatcgat atttttaaaa aattatgata
      241 aattattaga agcttacaaa cttttagagc aaaataaaat cgaagaagct aatgttttac
      301 tttctcagat aaaagaaaat tcaagtttaa atcaaatagc taaaaacctc aaacattatc
      361 aaggcattac acaatgaaaa aaatattttt aacactattt tgtttaatat ttctatgtgc
      421 ttgtggcacc aaaagacaat attttgaacc aaaacaaacc gatggagatt taagtcataa
      481 tagcaattta aaaagtaaaa tcgttgattg gaatctagtt tctgcaaaac ttagcaataa
      541 tacaactatc ttaaaaaata atatctccat agacaagttt aaacttccta aaaattatat
      601 gcttctagct tatcaagatg gggaatattt tactgcagat aataatggaa atttaaaaat
      661 ttttgacaat tcttataatg aaatttataa ttttcaattt gacgctagtg ttgtaggagt
      721 agcttctaat ggagatgatt tagcccttgt acttgcaaac aatactatag ttcttgcaaa
      781 tcgttctttg ggtattaaat tcagtcaaac cctaacctca gctccagccc aagacagtcg
      841 taccgctaat cctatatttt tagacaatat catcgtttat ccaacactag atggtaaaat
      901 tttaattctt tcaagaaaca atcttcaaat cattaaagat gtggttattt cagcagaaaa
      961 ttttttcaac aatgtaatcc atctaagtgt aatcggagat aaacttatag cagcaacagc
     1021 taaaaaaatc attgttgtaa gccctgctag aactctttat cttgacgctg acataaaaga
     1081 tgttgcactt agcgatgatg gtatttttat actagaaaaa gatggcacta ttattaaaac
     1141 tgattataac ttaagaaaaa ttgcggaaaa aaaatttgaa tttgctattt ttgtaaaaag
     1201 caatatatac aataattatt tatatatttt tgaaaaaaca ggctatctta tcaaaatgaa
     1261 tctgaattta gataatgcac aagtatttaa actttcagaa gctgttgata aaatttcttt
     1321 catgggaaat ggtaaatttt actacggaga taaaatttta gatttgctat gataaaaatt
     1381 ttagaacaaa caataaaggc tttaaaatta aatttaaagc cctatgactt aagtatgttg
     1441 actagaaaaa aaagttatat ttgtgctaaa gatcaaaata acattctttt tatgtataca
     1501 ggaaaaacaa aatttttaat gaaagatgcc ttatttttag aaaatctagc acagcaaatt
     1561 aacataaata acaaatattt ttttagtatg gcttctcttt gctctaaagc aaaaaatcat
     1621 ctagaaatga aaggatttaa tatctatgtt gctctgtgat attgggaatt caaatgctaa
     1681 tttcctagat gataacaaat attttactct taatatagat cagtttttag aatttaaaaa
     1741 tgaacaaaaa attttttata tcaatgtcaa tgaacatctc aaagaacatt taaaaaatca
     1801 aaaaaatttt atcaatcttg aaccttattt tttatttgat acaatttatc aaggattagg
     1861 aatcgatcgc atagcagctt gttatactat tgaagatgga gttgttgtag atgcaggtag
     1921 tgctattaca attgatatta tttctaattc tatacatctt ggtggtttta tcttgccagg
     1981 tattgcaaat tataaaaaaa tttatagcca tatttcacca cgattaaaaa gtgaatttaa
     2041 cactcaagtt agtcttgatg cattcccaca aaaaaccatg gatgctttaa gttatggtgt
     2101 ttttaaagga atttacctac tgataaaaga tgccgctcaa aataaaaagc tttatttcac
     2161 tggtggagat gggcaatttt tagcaaatta tttcgatcac gcaatttatg ataaactttt
     2221 aatctttcga ggaatgaaaa agattataaa agaaaatccc aatttacttt attaaaaatg
     2281 ttacaaaaat tctcattaat atcaaacctt aatgaaattt aactttttgt aaaacaaatt
     2341 caattaaact tctatttaga aaaaagttta ttaaaataaa aaaaggaaaa acaatgagcc
     2401 aacaagaatt tgatgtgctt gtcatcggag ctggaatttc aggagcagca ttattttacg
     2461 agcttgcaag atatacaaat attaaaaata ttgctttgat agaaaaatat aatacagctg
     2521 caacattaaa ttctaaggga acgagtaatt ctcaaaccat tcattgtgga gatattgaaa
     2581 ccaattatac tttagaaaaa gcgcgaaaag taaaaagaac agctgatatg atagttaaat
     2641 atggactcat gcaaaatgcg caaaataatt tcatgttttc tcatcaaaaa atggctctag
     2701 ctgttggaga tatagaatgt gattatatga aaaaacgcta tgaagaattt aaagaacttt
     2761 atccttatat aaaatttttc gataaagcaa aaatcaaaca aattgaaccc aaagttgttt
     2821 taggagaaga ttgcaatcaa gatagacctg aaaatatctg cgccatgggt gttgaaagcg
     2881 gcgaggtttt tacaactgta gattttggga aaatgagtat aaatctaata gaacaagctc
     2941 aaaaacaaaa taaaaatact ttcgttgcct ttaatcaaga aattattcac atagaaaaaa
     3001 aggatgatat ttttatatta aaaacctcaa atcatcaaga ataccatgcc aaaagcgtag
     3061 ttgtcaatgc tggagcgcac tctttatatt tagcacataa aatgaactta ggtatggata
     3121 agtcttgttg gcctgttgca ggaagttttt atttaaccaa acaaaaactt ttaaatggta
     3181 aggtttatat ggtgcaaaat cctaaacttc catttgcagc tcttcatgga gatcctgatt
     3241 tgcttgctga tatgaacacc cgctttggac ctaccgcact tgttattcca aaactagaac
     3301 gttatcatgg tctaaaatca gttccagaat tttttgaagc actaaaactt gataaaactg
     3361 ttttaaaagt aacttttaat atgtttaaag atgcaacaat tagaaattac atcttttata
     3421 attatctttt tgaactacct tttgttgata aaagcttatt tgttaaagat gccaaaaaaa
     3481 tagtcccaag tcttaaagca agcgatattt attatgcgaa aggttttgga ggcgtaagac
     3541 cgcaagttat tgataaaact aaaggagaat taatgctagg tgaagcaagc atcacagaaa
     3601 cccctggtat tattttcaat atgactccaa gtcctggagc aacaagttgt ctaggaaatg
     3661 ctgaaagaga tgcaaagctt gtatgtaatt acctaggaat ggaatttaac gaagataaat
     3721 tttcttcaga attattgtaa tcattttgtt tctattttta gctacaataa tttcaaaagg
     3781 agtttaccat gcttaaaaaa acaaaaattg tagccacagt aggtccagca agtgaaaagg
     3841 aagaaattct acgccaaatg attatcaatg gtgtaaatgt tttccgttta aacttttctc
     3901 atggaacaca tgagtatcat aaaaaaaact tagataccat aagaagagta gctaaagaat
     3961 tgcatactcg tattggaatt ttacaagaca ttagtggtcc taaaattcgt acaggtgaac
     4021 ttaaagaacc atttgaatta aaaaagggtg atagacttga tttttatcgt gaaacaattt
     4081 taggggagaa gattgctcaa aatcattata aaatcagtat caatcaaaaa tccattttag
     4141 atatgttaaa aattgatgaa tatatttatc tgtatgatgg atcaattcgt gctaaagtag
     4201 taaatataga taatcaaaaa attgaaacca ttatagaaaa tgatggtttt ttaaactcaa
     4261 ataaaggtat taattttccg aatactaaaa tcaatattga tgttattaca caaaaagata
     4321 aaaatgattt actttggggt ataaaaaatg aagtagattt tttagcaata tctttcgtac
     4381 aaaatgcgca cgatattgat gaagttcgtg aaattttagc acaaaataac gcaaaaatat
     4441 ctatttttgc aaaaattgaa aaatttgatg cagtagaaaa tattgatgag attattaaat
     4501 ctagcgatgg tataatggtt gcaagaggag acttaggtat tgaggtacct tattataaag
     4561 ttcctaatat ccaaaaagaa attatacaaa aagcaaacaa tgcctctaag cctgttatta
     4621 ctgcgactca gatgcttttt tcattagcca aaagcaaaac cgccacaaga gctgaaattt
     4681 cagatgttgc aaatgctgtt ttagatggaa cagatgcagt aatgctaagt gaagaaagtg
     4741 ccgttggtat agatcctgca aacgctgttg atataatgtg ccaaactata atagaaacag
     4801 aaaaacgcta tccatataac aaatttaatg attttaatga tttagacaat acagataaaa
     4861 tcatgcgttc ttcagctcat cttgcaacag atcttaacgc tgatgctatt ttttctttaa
     4921 caagtagcgg aaaatctgct attaagattg cgagatatcg tccaaatata gaaatcatag
     4981 cagtagggca ttctgaaaaa accttaaact ctttaagtat agtttgggga gttaatcctg
     5041 caatcttggt taacaaaagt aatgaactta cagaattatt aaaagactct gtaagatcaa
     5101 gtgttgaaaa aggttttatg gatgaagata aatgctatct tctaactgca ggctttccaa
     5161 caggagtaga aggtactagc aatcttatcc gcattctcaa taaagagcaa attgcttatt
     5221 atctacaata aaacattaaa ttcctttgaa aataaggaat ttaatgtcct tataaatttt
     5281 ttaagtcaaa agtcgatata aattaaagcc tcacacaaag gagcaaatat gcaagtgaat
     5341 actttttcaa atatcgctag catggcacga acacaagtta gcaataagaa ggcagatgat
     5401 gctaaggaaa acacaaaaga caaaaatgtt caaagtgcta attctagcaa ggatgtagat
     5461 aaaaataccc ttgaaaaatt aaatgcactt ggtggaaaag gcattacaca aatttaccta
     5521 gttcagtttc aacagcaaac aatgaatgct gtaataggtt cgagcaatgc ccaaactgga
     5581 ctagatagtc ttttaaatgg tgccaattta gatactgcga aatctatact tacaaatatt
     5641 gattttgcat ccttaggcta cagtagcaaa aatccacttg atatgaatac agatgaactt
     5701 caacaacttg taagtgaaga tggttttttt ggagtggaaa atacagccaa tcgcatcgcg
     5761 gattttgtta ttaaaggcgg tggcgacgat gttgaaaaat tgaaaaaagg tcttgaaggt
     5821 atgaaaaaag gatttgagca agcagaaaaa atgtggggtg gagaacttcc tcaaatcagt
     5881 caaaatacaa tagatgcggc acttaaaaaa gttagcgatc gcattgatga actaggcgga
     5941 aaaactctag atcttcaagc ttaactaaaa atgcttagaa atttctaagc atttttagtt
     6001 gttattaata tcaaaagtaa aaaattcact cttaaaatta ttaggtaaag ttttatactg
     6061 agatatcgca gcttcatagt tctttacttc ttgatacaac ataccaagag ctgctttact
     6121 ctctttgtta tttttatctg taagtttaga aagctgcaaa agcgctatag ctgaatttgg
     6181 attatttgca cctacggctg ctacggctgc taaaaataaa gttttagtat ctttagctcc
     6241 ataatcatca atcaaagaat tataaagcgc ataagcctcc tcgtattgct gtgcaaaaat
     6301 atccaaataa gctaaagttt gtaaaatacc ctcatctttt gctcctgaaa cattaatcaa
     6361 ctctttaaat ttctgtcttt ctaaatttaa aagccctgca atatgcatta aattaacata
     6421 aaattcccta gctatatttg gcccaccaaa aacactacga taatcaagtt ttaaattttt
     6481 aaaatgaatt tgagcatttt gagcatattc tttaatattt aaatttgaat ttaaagaatt
     6541 aaaatacaaa atatttgcca aaatatcttc aggcaactct gaacgcaatt tagcaatttt
     6601 cacatctact tgattattaa ggttattatt tttagcaaca atagcttcaa aaatcaaact
     6661 caaaggcgta tctttttttg tttcatctaa ataaggaagc atagaaatat aattattatt
     6721 aactaaaaat aacatacttt tttgcatatt agctttaaaa ttagaatcag cagctatatt
     6781 atcaagaatt tcattgtaaa gtttagttgt atcaatatca attaattttg cacaaaacat
     6841 agcaaaagca cctgctaagt aatttttagg attaagatga tatgaacttg aaaaatgctt
     6901 ataagcaagt tcataatttt gcatttgggc ataagttaaa gccaaattat aatgtaaaat
     6961 actatgttct ggataatcct tgataagttt ttgaaattct tggttagcaa ggcgtaactt
     7021 ctgatttaat gcatagttaa taatattggc aatttttaca ttggtagatg aaagagcctt
     7081 gcttatatta agataaattc ccgcatcagt actatcatca acgaaatctg taacattagc
     7141 ttttttaata tataaagcag cctgcttact atcaaaaacc tgataaggtg caaaataaaa
     7201 aagcaaatcg aattgatctt tttgtttttt tagcaaatct tttgaaaaag aattttgagc
     7261 aactgctata ttaaaaagat ccttatttaa acgaacttga attttataag tatctaaaat
     7321 cttatatcta tctttatcgt tatcataaga attttgcaag cgcgctaaca tatcttgata
     7381 atttcctgtt ttaatatcaa ccaatgttaa agccgccaaa ctctgattaa aatctctttc
     7441 aattttcatc gctgtactta aagcgacttt agctttagca tattctccta ttctagcgta
     7501 taaaagacct aaagataaac tagattcaaa attgccttga gaatttaatt gctgtatagc
     7561 cttggaatca aagtccattt ttgcataaat tttagcagac aaatactttg caacatcaga
     7621 atacggctcc acatctgttc tttgtaacat ttgtaaggcc tcagggtaat atcctttgta
     7681 ataattaatc aagcttaaat aataatcata taattttgat tttccttctt ttggaagata
     7741 cacttgagct aaatcaatat aatatctaaa tttttcctta tcattaagct ttaaagcaca
     7801 aacagcagca ttgatagcag ctacactttg tttttctcca ttggctatag ctttcttgaa
     7861 gctttcaaaa gcttcttgga atttattctc attcatttga gaaacgccta aattataatt
     7921 agataaagat tcattatata cggcaacttg ctcataaact tttaaagcct gttcaacctc
     7981 accctttaaa tataaagcat ttgctttttg gatcatacca tcaattcttt gcatatcatt
     8041 gtatttatat gattcatcag gcataataac aggttgttct aaaggcttag aagctataat
     8101 atctggttta atttttcctt cactaaaagt taaataaaaa agtgtaaaaa ctaaaataca
     8161 aataatcccc aaagataaac ccacaagaga cataaactta cgatctttat accaaggcat
     8221 aggctcttga ctttcaactt cttcaaaagt tgatacatct tcaggcgcac tttctcttgt
     8281 aaatttaaaa ccactttcac tattttcttg aggtaattct tctggcaatg atgcaaattc
     8341 ttcatcttct ggagcttgcc cctcttgccc tttaaatccc tctaaactct catcaagtct
     8401 tggttgattt aagccatctt cgggtttttc tagtattata tcttcttgtt cagccatcta
     8461 tactctttaa aaatattttt tcaaaacatc aggaatatga atttttcctt ctttatcttg
     8521 ataattttcc ataatcgcta ccaaggttct tcctactgcc aaagatgagc cattaagagt
     8581 gtggacgagt tcattttttc cttgttcgtt tttatagcga attttagcgc gtcttgcttg
     8641 aaaatcacga caatttgaaa ccgagctgat ctcacgatat ttattctgtc ctggaagcca
     8701 cacttcaaga tctacagttt ttgctgcact aaaacccaaa tctccagtgc aaagcatcaa
     8761 atgtctatgc gctaaaccta aagaactcag caaatcactt gcacactcaa gcatttcatt
     8821 aaacacacta tcactttgct caggtttagt gatacttaca agctctactt tttcaaactg
     8881 gtgttgtctt ataatacccc ttgtatcacg ccctgcactg cctgcttctt ttctaaaaca
     8941 agcactataa caagtcattt ttataggtaa agtttcactc gctaaaattt ctccgctgta
     9001 aagattggtt actggaattt cagaagttga gatcaaatac aaatcctcat catctacctt
     9061 atacatatct tctttaaatt ttggcaactg acccgtccca aacatagtag caccatttac
     9121 caaaaaaggt acattaacaa attcaaatcc acgacttcta ttaaaatcta tcatataatt
     9181 taccaaagca cggcttaata aagctccttc atttttaagc acacaaaaac gactttgtga
     9241 aatttttacc ccacgcataa aatcaagcca atttaaactc tcgcctaatt caaaatgttc
     9301 ttttggagta aaatcaaagc taggtggatt taaaactttt ttaagctcca cattttcatt
     9361 ttcatcttca cccacaggca cacattcatc agggatattt gggatggcat gagcgatttc
     9421 ctcaagctca ttttctaaag catttacttt agcgctttgc tcattaattt tgcttttatt
     9481 ttcgcttaat tttgctttta aactttcttt atcttcggct gtagcaagct ctttactgaa
     9541 tttattttga aaagcttgaa attcttccaa ggctattttt tcttttttta aacttgcaaa
     9601 aagttcagca agttttttta agatattttc atcaactttt ttatttttta actttttagc
     9661 cacttcatca aaattatttt gcaaattttt taaatctagc attttctact ccttaaagtc
     9721 cgattttttc ataaattttt tgcatttttt cttgggcgat ttttcttgct tttgtcgcac
     9781 caaaatccaa aatttctttc aaatgcgaag gcttttctaa aagctcatta tatttttctc
     9841 ttgcttcttt aaaataagca tttacaagct cgtttaaata tattttaaaa tgtccataac
     9901 cctcaccacc tttttcatag cgtatttgta attctttttg ccctgattca tctaaaaaaa
     9961 gctttgcgat tttaaaaata ttgcagtttt catgatcttt tggatcttct aaagcggtac
    10021 tatctgtaac tatggaagaa atttgttttt ttaaggtttt ttcactgcta aaaatatcta
    10081 tagtattttg ataagattta ctcatttttg ctccatcagt acccacaacc acagctactt
    10141 cttcattaac tctcgcttct ggaagggtaa aaatttcacc ccattcatta ttaactttta
    10201 aagcaatatc gcgtgcgatt tcaacatgct ggatttgatc ttttcctaca gggacaattc
    10261 gtgtatcaaa aagtaaaata tctgccgcca ttaaaacagg ataagaaaaa agcccatgtg
    10321 aagcactaag tcccttagca actttatcct tgtaactatg tgcacgctct aataaaccca
    10381 taggagtaaa ttgcgataaa atccaataaa gctccataac ttccttaaca tcactttgca
    10441 accaaaaaac gcttttttga ggatctatac caaggcttaa aaaagccgca gcagctttta
    10501 aggaattttg tttaagtttt tctccatctt gagaagaagt catggcatga taattagcaa
    10561 taaacataaa catttggctt ttttcttgtg catctaccat ttgcttaatc gcaccaaaat
    10621 aattacctat atgcaaatcg ccacttggct gaaggcctgt taatactctc attttatcac
    10681 ctttttaatc tcgcttaaaa gctcatctat atttttattt tctatattta aaataaaatt
    10741 tgccttttgt tcatacttgc ttaaacgctc attatataat ttttttgctt taatttcatc
    10801 ataaaataaa ggtcttttag aaatttcatc tttgtctaaa cgctttttta aatattcaaa
    10861 atctgctttt aaataaatac aaaaacctgc tttttctaaa tttgaaacat taacaaaacc
    10921 cccacctgta gcaatacaag ctttctcaca agaactaaaa aaatcagcca ttttttgctc
    10981 ttgttctcta aaaaaatttt cccctttttg ttcaaaaatt tcactgactt tttgattaaa
    11041 tttttgttct attaaaaaat cactatctaa aaaaacaaga tctaaatcct tagctaaagc
    11101 tcttgctaaa gtgctttttc cagaacccat aaatcctata aaaacgatat ttttagcttt
    11161 catcattttc tttactgccc tttttacgcg aagcaatcac taaaggcaca ccttcaaaat
    11221 taaattcttt tctgatttga ttttgtaaat aacgcttata gctaaaatgc aaggccttag
    11281 gacgattcat aataagtgca atttttggcg gtgctaagtc atattgtact gcataataaa
    11341 ttttaaccaa tttcccataa tcatgcggca aaggatgtgc tcttgtggca ttttctatca
    11401 aggtattaag cttagaagtt tggatttttt gagtgaaatt ttcaaaaatt tgcaaaattt
    11461 tatcgagtaa aacatgcacc ctttttccac ttaaagctga tacgctaatc acgggtgcgt
    11521 aagctagaaa tttaaaacga tcaagacgca attcttttac agtcttatca aaatccatct
    11581 cacttttatc ccatttattt aaaacaataa tcacacccaa ataatgctta gccacaagcc
    11641 cagcaatgcg ttcatcaagc tcgttaaagc cctcatgcgc atctaaaacc aaaagtgcta
    11701 tttgagaatg agataaaatt ttttccgtgc gatttagggc aaagcgttcg agtccttgaa
    11761 ttttacccct ttttctaata cctgcagtat caacaaattc tatcacttta tctttatgaa
    11821 ctacactttc attaacagga tctatagtag ttcctgcaat agaacttaca acactgcgtt
    11881 cttgtttaac caaagcattt aaaagacttg attttccaac atttacacgc cctacaatac
    11941 ccactctgat atgattttga tcgacttctt taaattgaaa ttcttttcct tcttcataat
    12001 actctaaaaa atcttctaaa ttttcttctt catcggggat taaaaactct tcatgtaaaa
    12061 atttttcaag ccattcataa agttcatcta agcctacatt atgggttact gaaagattaa
    12121 agatttcctt tacgccaaaa tttgcaaact cccaagccct ttcttcatct tttttattat
    12181 ctactttatt aatcactaag gctataggtt ttccaagttt ttttaaagaa taaaaaaact
    12241 gtctatcctc atcatcaggc gctaatttcc catcaactag ataaagtatg atatcgcttt
    12301 ctttagctac ttttaaagtg ttttttttca catttttaaa aagttcatca ctttcatcaa
    12361 gccctccact atcaataagc atggcttttt ttgaatgaat atgaatttgc gttttatttg
    12421 tatctctagt tgtgcctgaa atatcacttg taatagctat tctttgtctt gccattctat
    12481 taaaaaggct tgattttccc acatttggct tacctataag tataatgctt tgcatttttt
    12541 tcctagaaaa ttatattttt aaaattatat aaaatttggc ttaatattaa gcaaaaaaag
    12601 actagaatta acccagattt tagtcaagga aaaaaaatgc taaaagtaat caagcataat
    12661 ttaggaattt atttcatgat tttagcatgt ttggattttg cacttatggg agcttgtgca
    12721 aaaattctta gcaaggaaat gagttctata gaaattatgt tttttagaaa tatcatagga
    12781 atttttttca tagtctatct tttaaaacga tctaaggcac ataaagaagg gggatatttt
    12841 tggctcttgg tatttcgtgg agtagtaggc acgctttcac tatatatgtt tttctataat
    12901 gtttcaaata ttacactagg tggagctttt gcttttcaaa aaactgctcc tatttttatt
    12961 actttaatag cttttgttgt ttttaaagaa aatattggca tcaaaggctg gataggaatt
    13021 ttaatagcat ttggtggagt gcttttaatc gctcagcctt gggctcataa tttaaatcat
    13081 tcaggctttg atttaaaaaa ttcagttata ggtatcacga gtggattttt agccgcttta
    13141 gctcttacaa gtgtaagaga acttagaaaa tcttacacta cagaacaaat tgccttttct
    13201 tttatccttt taggaacctt aatgccttta atttctatga tcagtgctga attttttgaa
    13261 ccacagcatc ttgattcttt acatttagat ttcattctag caccttttgt gatgccaagt
    13321 cttacagctt ggcttatcat tgccattatg ggaactttag gcaccattta tcaaattcat
    13381 gtcactaaag cttatggtat cgctaaacaa gcaggagtgg ttgccggagt tagttatctt
    13441 gatgtagtat ttagtatgat agttgggata attttgggag ataatttacc aagtactatg
    13501 gtttttttag gtataatagg cattattttt ggtggattaa ttttagttaa gaacaaagga
    13561 aaaaaatgaa aaaaatgata ctcattgctg gtccttgcgt gatagaaagc aaagatttga
    13621 tttttaaagt tgctgaacag ttaaaaaatt ttaatgaaaa tccaaatata gaattttatt
    13681 tcaaatcaag ttttgataag gccaatcgca caagtattaa ttcttttcga ggtcctggtc
    13741 ttgaagaagg attaaaaatt ttacaaagcg taaaagatga atttggtatg aaaatcttaa
    13801 ccgatataca cgaaagcaat caagcaaacc ctgtaagtga agtagctgat gtcttgcaaa
    13861 ttcctgcttt tttatgtcgt caaaccgatt tacttgtagc cgcagcaaaa actaaggcaa
    13921 aaattaatat caaaaaagga caatttttaa acccaagcga tatcaaatac agcgttaaaa
    13981 aagttctaca aacccgtggt atagaagatg aaggctatga agctgctcaa agaaatggtg
    14041 tttttgtagc tgaaagaggg gctagctttg gctatggaaa tttagtagta gatatgcgtt
    14101 ctttagttat catgcgtgaa tttgctccag ttatttttga tgctacccat agcgtacaaa
    14161 tgccaggggc tgcaggtgga agtagcggag ggaaaagcga atttgtagaa cctttagcaa
    14221 gagcggcagc agccgtaggc atagatggct ttttctttga aacacatatt aatccttgcg
    14281 aggctttatg cgatggacct aatatgctta atcttacacg ccttaaaaat tgcgttaata
    14341 cattactaga aatacaaaat atcataaagg aaaacaaatg aatattattg aaggaaaatt
    14401 aaatttagac tcaaatacaa aaattgctat cattaatgca agatttaatc atatcatcac
    14461 agatcgcctt gtagaaggag caaaagatgc ttttttaaga cacgggggca aagaggaaaa
    14521 tctaagcctt atacttgttc ctggtgcttt tgaacttccg tatgcgttaa aaaaagctat
    14581 agaaagcaaa aaatttgatg caatttgttg cgtaggcgca gtaattcgtg gctcaactcc
    14641 gcattttgac tatgtttcag cagaaaccac caaaggcata gccaatgtga gtttaaatca
    14701 taatatccct gtaagctttg gtgttttaac tacagataca atagaacaag ccatagaaag
    14761 agctggaagc aaagcaggca ataaaggctt tgaagctatg acaactgtaa tcgagatgtt
    14821 aaatttaagc aaggagcttt aatggcaacg cgtcatcaag ttcgccaaag cgtcatctcc
    14881 ttactttatg cttttgaatt aaattctcaa aacaacgttt ttgtagatga aattttagat
    14941 gaaaaaaaaa tacgcaatga acaaaaaaat tttactttaa atttatataa tggaatttta
    15001 gataatttaa acaatattga tgaaacctta aattcatttc taaatgataa tcaaattaca
    15061 gctttaggac atgtagaaag agctatacta agacttggag cttatgagtt actttttacc
    15121 gatactccta gcgccattgt catcaatgag gctatagaac ttgctaaaga acttgctaat
    15181 gacaattctc caaaatttat aaatggagtt ttagatgcct taataaaggc taaaaaatga
    15241 agctttgtgt cgcacttgat ctttctacaa aagaagaatg cttacaactt gccaaagaat
    15301 taaaaaattt agacatatgg ttaaaagtag gtttaagagc atatttaaga gatggtttta
    15361 aattcataga agaacttaaa aaagttgatg attttaaaat atttcttgat cttaaatttc
    15421 atgatattcc caacactatg gcagatgctt gcgaagaagt atcaaaactt ggtgttgata
    15481 tgatcaatat ccacgcaagt gctggaaaaa tagccataca agaagttatg acacggctta
    15541 gcaaattttc aaaaagacct ttagttttag cagtttctgc tcttacgagt tttgatgaag
    15601 aaaatttctt tagtatttat agacaaaaaa ttgaagaagc tgtaattaat ttttcaaaaa
    15661 tatcctatga aaatggactt gatggtatgg tatgctctgt ttttgaaagc aaaaaaatta
    15721 aagagcacac aagttcaaat ttcttaaccc ttactcctgg aattcgtcct tttggagaaa
    15781 caaatgatga tcaaaaacgt gttgctaatc ttgcaatggc tagagaaaat ttgagtgatt
    15841 atatcgttgt gggaaggcct atatataaaa atgaaaatcc tagggctgta tgtgaaaaaa
    15901 ttttaaacaa aatacacaga aaaaatataa gcgaaaacga tatagagcaa aattatgaag
    15961 taattcagca aaaagaatgg gatatgtgta atcactttga agaatggatt aaaactcagc
    16021 ctgataaaga acatgcttta aaagaatttt atgctaagtg tgggataaaa tattgaatta
    16081 tcaacaatta gaatgcgatt actttaatct ttacaatcag tttcttagcg tggattttca
    16141 aatttcatta tttgaaaaag atcataaagg tttaattaaa gattttatat ttttttatta
    16201 tcaaatttta aaacaaaaag acttgagcta cttgcttgag gtaagaaata aaatttccct
    16261 gaaagtttat aattatatgc aagagcactc cacttctcca aaagatttaa gtcttatttg
    16321 tctaagagaa aataaacata ttgaattttt tcaaatattt tacaaggctc tcgcttattt
    16381 tgtagccttt agaaaaaaac ttgatggaga acaaaaaatt aaaaatttga tttcaaatat
    16441 caatgactgt tttggctatc atttcttgaa ttctgacttt aacaatcttc aaaattttca
    16501 aaaaagcgat ttgttcacct tacctgaaaa acatcttaaa tattttcact tcgccatgat
    16561 tcatctttgt ttcatggttt taaatccttt aaattttaaa gactctaatc ggcatcttga
    16621 taaagcgatt aattatcttg tcgatggaac ttttgaaatt tatgagctca tctttaaaga
    16681 atatttttta ttgttttcaa aagataaaga gctcaaggat gaa
//
LOCUS       DAPIWJ010000034        16148 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.034, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000034 DAPIWJ010000000
VERSION     DAPIWJ010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16148)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16148)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16148
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.034"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(153..1349)
                     /locus_tag="RJ259_000856"
     CDS             complement(153..1349)
                     /locus_tag="RJ259_000856"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HDV7366577.1"
                     /translation="MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFV
                     AGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGHFSKEQCLHPDEVDVMVFL
                     NEQSPDINQGVDQEDGETGAGDQGIMFGFASCEAEEYMPAAISYARMLCDRVYAYAKA
                     NPHELGVDIKTQVTIDYGTKANFENCKPQSIHTIVVSAPCVESMKIEDLRSLVMKLIL
                     DSNLPKELFDPNKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYSPIGGGAQSS
                     KDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCMGTNTSVN
                     DDVLSDFVMQNFSLTPNWIRDKFHLDKPSKETFLYADVAARGQVGQKDYPWEKLDALE
                     QFKKLL"
     gene            1490..2713
                     /gene="sstT"
                     /locus_tag="RJ259_000857"
     CDS             1490..2713
                     /gene="sstT"
                     /locus_tag="RJ259_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HDV7366578.1"
                     /translation="MFSKIIQSYAKGNLIVQICIGIALGILIGISSKEISEIANLLGI
                     LFTSALKAIAPMLVFILILTSICTKDFSQSGAKIKNIIILYIVGTFFASACAVLANFF
                     FPVKLVLDGVQTATNSSPTHMSDIFKDLLFKIVDNPINALSSGNYLGILTWAIAGGIA
                     LKHCSNEAKQVFIDINEGVLKIVKFVVKLAPFGIFGLVANSVAQTGAQGLLSYVKLLI
                     LLVATMLFVTFVINALIVFFYTRKNPFPLIFICLRHSAFFAFFTRSSAANIPVNMALC
                     AKLGIDKEFYGISIPLGATINMAGAAVTIAILSLTAANTVGIEISLLQAFLLSIIATF
                     AACGASGVAGGSLLLIPLACSLFNIDYDIAMKVVAIGFIIGVIQDSVETALNSSTDVL
                     FTAICSKNELNYNIK"
     gene            2723..3610
                     /locus_tag="RJ259_000858"
     CDS             2723..3610
                     /locus_tag="RJ259_000858"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HDV7366579.1"
                     /translation="MRHLITTKDFNKVEIMELFKEASDFLDEKPRTFLEGKSITTIFF
                     ENSTRTLSSFESAARRLGARVLRLDVSRSSSSKGETLYDTAANLDAMSPNAIVVRHAN
                     SGVPLILAKHMHCPVVNGGDGKHAHPTQALLDLFTIYNHFQGNVEGKKICIVGDIKNS
                     RVAASNIELLSRFNLDITLVAPPHFMPNTHLKKHYKLDENIIANSDIIMSLRTQTERH
                     NKTVYASLKDYANDFCIQKSLVKDKKLILLHPGPVNRNIDISDEMMSNERTLVLKQVK
                     NGVAIRMAVLKKLILENEG"
     gene            3614..5335
                     /locus_tag="RJ259_000859"
     CDS             3614..5335
                     /locus_tag="RJ259_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HDV7366580.1"
                     /translation="MLEWDLSALFHDKEALQNFTQDQIQQSLNFKKNYENKLYTLNAN
                     EFLQALKDYENLNQALGKIMTYAYLLFAKNTQNGSFYAQYEEECKKIEENLLFFELEF
                     CELAPEKSREFTTFCKDYDFYLSNLLQNKRYNLSKNEERIMLYLSNTGANAFSRLFDE
                     SMSALKIPFEGKKLSEEEILSKMYDENRKIRKKAAKKFSKVLQKNSRLLSFIINMIKT
                     ERKNISLLRGYENAEISRHISNQISQKSVDSLIASAQKHFNLVSQFYKRKKQILGYDE
                     LKDYDRYAPIGKEASFDFKTSKNIVLEAFQAFSPQFYDIAKNAFDQGWIDVYPQENKQ
                     GGAFSHSATSDAHPFVLLNYTNKRRDLFTLAHELGHTIHQKLSYNVSYLNQNTPLTTA
                     ETASVFAEMLVFDFIKDKLKKEELLSLYANKIEDIFATFYRQINFTCFERRLHAQENE
                     LSTEEINKIWMEESQKMFQDSVKLTKNYASWWSYIPHFIHSPFYCYAYAYAQLLVLAL
                     YGLYKSKKCENFKELYIKMLSLGGSVSPKELVGMFGFDIEDENFWEIGIKEIQKLINE
                     FMELQSC"
     gene            5329..5766
                     /locus_tag="RJ259_000860"
     CDS             5329..5766
                     /locus_tag="RJ259_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366581.1"
                     /translation="MLETILKNENFIHTMQKHCYEVISHLIEENIEFSIVANTNFIDF
                     NPELPKELDIKQNPYALFALGGYTFESIQLNKDFIQFHAGFGNDDFDSFVKVDLGAIT
                     QIQVENSILFVNFSLYKREDSKNLQKSKNIFLNNPKNKDIFKK"
     gene            5763..7838
                     /locus_tag="RJ259_000861"
     CDS             5763..7838
                     /locus_tag="RJ259_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HDV7366582.1"
                     /translation="MNLFEDLNDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLI
                     GEVGIPSHNTLTLTFTNKAASVMRHRALNFLQGNHNPLLCTFHKFGLLFLKLHFERLE
                     RKNSFIVIDTDDTKKIIKDLIHDKNKDNVYDIIQYISYCKNEGKRVSNVFEDLNLLKE
                     HNFEKYQNEYKFANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLLYNY
                     ITVDEYQDTNTLQYKILKNLCCMHENITVVGDDDQSIYSWRGAKIENILNFQNDFKNV
                     KLVKLEQNYRSVGTILQAANNLISHNEQRLGKTLICTKDTGENIKILKNENEKDEGLY
                     IAQEVKKLLNSGVEAKEIAILFRVNALSRAIEEAFMKKQISYKLLSGMRFYERLEIKD
                     LISYLRLILNPSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGV
                     GILTTKKAQNEANIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSEQDDGDERIRNL
                     DEFYANLREKLKEDPKASLEDLLSEISLLSDQDNLDEECVCLMSIHASKGLEFDYVFI
                     IGFDEGFFPLNSEENLEEERRLAYVGITRAKKFLTISVANSRFYHGSRANINPSRFLE
                     ESKLINEKSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNKSGKEEKLNINFGGIMRVI
                     MASFVEKAV"
     gene            7835..8653
                     /gene="truB"
                     /locus_tag="RJ259_000862"
     CDS             7835..8653
                     /gene="truB"
                     /locus_tag="RJ259_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HDV7366583.1"
                     /translation="MNKIFAAFKPKGLSSNAFLSTLKKKYKNKKAGYSGTLDPFAKGV
                     LIVAFGQYTKLFRFLKKTPKTYKATLWLGVYSLSLDDQNIKEIQNIKEFDLANLKQII
                     DQMQGIISYTPPQFSAKRINGTRAYELAKKGIEANLKPCQMEVFDCKILSYNHPFLNI
                     EITVSEGAYIRSYCELFARKLGINATLSSLERIKEGKFVYNNEKSLNVLKYINLKPNF
                     IKDLNKLENGAKIFVEELEFHDEGDYYIETEKYFSIINIKENTVKYLLNKVEKC"
     gene            8647..8874
                     /gene="csrA"
                     /locus_tag="RJ259_000863"
     CDS             8647..8874
                     /gene="csrA"
                     /locus_tag="RJ259_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HDV7366584.1"
                     /translation="MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILR
                     KELVQQVKDENLHSVVQNDIKLDDLSKKLIK"
     gene            8871..9638
                     /locus_tag="RJ259_000864"
     CDS             8871..9638
                     /locus_tag="RJ259_000864"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HDV7366585.1"
                     /translation="MKAYAKANIFLKLTGFDSRKYHLLESRFILLKDVFDELELIDKE
                     SDSKKEFEIISNFKCENNIIQKAYLLLSRRYNNELKELFSKKSLKLTKNIPVCAGLGG
                     GSSDCASFLLLINETLNLKLNLQELINLSIQLGSDIAFFLSGFHSANVSGCGEIIEEF
                     EDDIPNLKWTFPQISCQTKAVYDEFDREIFDFQKNNNQAQIYKKLSTKELLQNFKNKE
                     LNDLFTPCATLYPKMKSYLQEDFFLSGSGSSVFKVDR"
     gene            9635..10087
                     /gene="smpB"
                     /locus_tag="RJ259_000865"
     CDS             9635..10087
                     /gene="smpB"
                     /locus_tag="RJ259_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HDV7366586.1"
                     /translation="MKIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDS
                     FVRIIKNEIFLLNSHISLLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIV
                     ALDLYFNTKNKVKATLALAKGKNLHDKRETLKKKQADLEAKAAMKNYK"
     gene            10098..10700
                     /locus_tag="RJ259_000866"
     CDS             10098..10700
                     /locus_tag="RJ259_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HDV7366587.1"
                     /translation="MKKISALFLISLAFFLNACSKEEEIQNDFMFEEYHKGDKIVLNS
                     VNGGSKTLIRTDKGFVVEGEEGKVLMFDFFGTFCTPCKEEALDLSKLWKNNSSKFIII
                     GLTHFEDVSDETVKKFADDYGAYYFLSNDSSNDRIIAQILKDIDYQNMEQLPFKVVLK
                     NGIYQKISDYWNNNTPTNFYLGKIPTELMQEDLNKIYKGK"
     gene            10700..10990
                     /locus_tag="RJ259_000867"
     CDS             10700..10990
                     /locus_tag="RJ259_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HDV7366588.1"
                     /translation="MPKTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQN
                     LEKASQTMLEIHHNGSGICGIYTQEIALSKQKKVMDAAKLANFPLQAKVEEE"
     gene            10987..13116
                     /locus_tag="RJ259_000868"
     CDS             10987..13116
                     /locus_tag="RJ259_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7366589.1"
                     /translation="MKYQENLQKYLDNAKNLSLINHHEFVTCEHVLFALLKLSTDFKD
                     IFEEFSDGDLELLETELKNYISQNNQVIKQEIEPTISVVLDEILLSSKNKNNEIKIID
                     FLEKLIQDSRSYSSYLLKKHNINLNKIQELQNHENIQNLNNHTSDLTLLAQNGKIDPL
                     IGRKFELERMMQILSRRKKNNPILVGEAGVGKTAIVEGLALAIAEKKVPKNLQNAKIF
                     SLDMASILAGTKYRGDFEKRIKEILNELEKIPNAILFIDEIHTIVGAGSTGESHTDFS
                     NLLKPALSNGTLKCIGATTFMEYKNTFDKNKPLSRRFAKINVDEPSQEESLQILKGLK
                     NKYEEFHHIKLNDEILQYAVIWGKKFFNDKFLPDCAIDLIDELGASFALNPKAKKNAN
                     LKDLENVLAKMTHHHKIFEFDQNKALMNLKTNLKAKIFGQDEVIDSLVSSLKQSFAGF
                     KNSNTPRGVFLFTGSSGVGKTELCKALAEFLGLNLERFDMSEYAEKHTISKLIGSPAG
                     YIGFEEGGLLSNAIRKNPFSLVLFDEIEKAHPDLSNTFLQIFDNAELTDNSGLKVDFK
                     NTIIIMTSNLGLKESNELGFLSKNEEKSNRAIKDFFAPEFINRIDKILHFNDLNDAIL
                     VKIIEKELDEISKNLNNIKLSMDDKAKIYLAKKAYNKEFGVRLLKRIISEEIGEKISD
                     EILFGKLKKGGIAKIKLGKNGKLKFIF"
     gene            13091..13738
                     /locus_tag="RJ259_000869"
     CDS             13091..13738
                     /locus_tag="RJ259_000869"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HDV7366590.1"
                     /translation="MESSNLYSKLLNAPKNAPVFLSQNLEADFIVKAYTFGLFPWTSK
                     PVTWWCPDPRCILIPNQIHIQKNMKKFINLYQIKLDYDFLKLITLCRDTRSQSWIDDE
                     FITTYYKLFTQGYAHSLELYENNELIGGIYGLILGKVFFGESMVSIKKNASKVAMIKL
                     CDLLKPYDFIIDCQVYNQHLEFMGAHNISRKEFLNILKEKCNQESGFKNFKDLIT"
     gene            complement(13760..15054)
                     /gene="cetZ"
                     /locus_tag="RJ259_000870"
                     /pseudo
     CDS             complement(13760..15054)
                     /gene="cetZ"
                     /locus_tag="RJ259_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344503.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetZ"
     gene            complement(15135..15761)
                     /locus_tag="RJ259_000871"
     CDS             complement(15135..15761)
                     /locus_tag="RJ259_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HDV7366591.1"
                     /translation="MGSELYLMFFAAITLLAILNPFGNLTQFLAMSDGLPLMLRKKLF
                     RTILYTAFTIVLVFLLSGPLFMNYIFRVSLDDLRVSGGLVLIIMAIKNLLFSTKIATK
                     DFSSYQDMDDKEILRQSLIPMAFPMLVGPGTLASVIVIAEDGGLDVALGGVMIAFIFM
                     FILFHFAATIEKIVGKLILHVFSRIAQVFIVAMGFKMIIVGLKDIFNL"
     gene            complement(15776..16135)
                     /locus_tag="RJ259_000872"
     CDS             complement(15776..16135)
                     /locus_tag="RJ259_000872"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HDV7366592.1"
                     /translation="MKELNEEEKKVILNKGTEAPFSGKYNDFYEKGIYQCKQCGASLY
                     KSEDKFKSGCGWPSFDDEIKGAVKRIPDKDGIRTEIVCANCNGHLGHVFEGEGFSAKN
                     VRHCVNSISLEFVKTKD"
BASE COUNT         6045 a         2464 c         2354 g         5285 t
ORIGIN      
        1 ccccaaagct aaattaattt agcttccttc ctaactttta tatttatgag ggatattgaa
       61 aaatatccct ctaagtcaaa aattaatata actttattaa ttctttataa ttatacaagc
      121 cttgtttaag cttgtataat attgttaatt ttttaaagta gctttttaaa ctgttctaga
      181 gcatcaagtt tttcccaagg atagtccttt tgtcctactt gcccacgagc tgctacatcc
      241 gcataaagaa aagtttcttt acttggttta tccagatgaa atttatcacg gatccaattt
      301 ggcgttaaag agaaattttg cattacaaaa tcacttaaaa catcgtcatt tacactggta
      361 tttgtgccca tacaatccac gcttaccgaa gtaggttttg caacacctat agcataacta
      421 agttgaacta tacatttttt agcaagccct gctgcaacta tgtttttagc taaccatcta
      481 cctgcataaa gtccacttct atcaacttta gtataatctt tgctcgattg tgcgccacca
      541 cctattggag aataacctcc aaaactatct actataagtt ttcttcctgt taaaccacta
      601 tcatgtaaag aagaatgatt aacatattta ccagttggat tgattaaaat tctagtctta
      661 ttaggatcaa aaagttcttt tggtaaatta ctatctaaga taagtttcat cactaaagat
      721 cttaaatctt ctattttcat actttcaaca caaggtgcag aaactactat agtatgaata
      781 ctttgcggtt tacaattttc aaaattcgcc ttagtgccat aatctatagt cacttgagtt
      841 ttaatatcca ctccaagttc atgtggattt gcttttgcat aagcataaac tctatcacat
      901 agcattcttg cataactaat agctgctggc atatattcct cagcttcaca acttgcaaaa
      961 ccaaacataa tgccttgatc acctgctcct gtttcgccat cttcttgatc gacaccttgg
     1021 ttgatatcag ggctttgttc atttaaaaac accataacat caacctcatc aggatgtaaa
     1081 cactgctctt tgctaaaatg gcctgctccg tcataaccaa tgttttttaa aacatcttta
     1141 actaaattat cgtaatcagc tttactaagt ttgtgatttg acttaacttc gcctcctatc
     1201 acaaccttat ttcctgcgac aaaaacctca ctcgccaccc ttgaattttt gtcatttttc
     1261 aagagtatat ccactatcgt atcagcgatt atatcagcgc acttgtctgg atgacctgca
     1321 cttacgactt ctgaagtgaa tagatacata aaaagtcctt tcatttaaaa tgaaccacaa
     1381 ttgtatccaa ataaacttat caaagcttga taaattaaaa attctctaaa attaagcaaa
     1441 agttagttaa aatcaacttt tgatataaaa aatatttaat aaggttttta tgttttctaa
     1501 aatcattcaa agctacgcta aaggcaacct catagttcaa atttgcatag gtatagcact
     1561 aggaatactt ataggcatta gctctaaaga aatatctgaa attgcaaatt tacttggaat
     1621 actttttaca agtgccttaa aagctatcgc tcctatgctt gtttttattt taattttaac
     1681 ctcaatttgc actaaagatt tttctcaaag tggtgctaag atcaaaaata ttatcatttt
     1741 atatatagta ggcacctttt ttgcttcagc ttgtgcagtt cttgctaatt ttttcttccc
     1801 tgtaaagctt gttttagatg gagttcaaac tgctacaaac tcatctccaa cccacatgag
     1861 tgatattttc aaagatcttt tatttaaaat tgtcgataat cccataaatg ctctttcaag
     1921 cggaaattat ttaggaattt taacttgggc aatagctgga ggtatagcat taaaacactg
     1981 ttctaacgaa gcaaaacaag tttttataga tatcaatgaa ggggttttaa aaatcgttaa
     2041 atttgtagta aaacttgccc cttttggaat ttttggactt gtggctaatt ctgtagcaca
     2101 aacaggagca caaggtttgc taagctatgt aaaactttta attttacttg tagctactat
     2161 gctttttgtt acttttgtta tcaatgcctt aatagtcttt ttttatacaa gaaaaaatcc
     2221 ttttccttta atttttatct gcttaaggca cagtgcattt tttgcctttt ttacaagaag
     2281 ttcagcggca aatattcctg taaatatggc actttgcgct aaacttggca tagataaaga
     2341 attttatggc atttctatac ctttaggagc tactatcaac atggcaggag cagcagttac
     2401 tatagctatt ttaagtctta ctgcagccaa taccgttggt atagaaatca gtcttttaca
     2461 agccttttta ttaagcatta ttgccacctt tgcagcttgt ggggctagcg gagttgcggg
     2521 cggatcttta ctgcttatac ctttggcttg ttctttattt aatatagact atgatattgc
     2581 tatgaaggta gttgccatag gttttattat aggggttatt caagatagtg ttgaaactgc
     2641 tttaaatagt tctacagatg ttctttttac agcaatttgt tctaaaaatg aattaaatta
     2701 caatatcaaa taaggtaaaa acatgcgtca tctcatcact acaaaggatt ttaataaagt
     2761 cgaaattatg gagcttttta aagaagcaag tgatttctta gatgaaaaac ctaggacttt
     2821 tcttgaagga aaaagcatca cgacaatttt ttttgaaaac tctacacgca ccctttcatc
     2881 ttttgaaagc gctgcaagaa gattaggtgc tagggtttta cgccttgatg tttcaagatc
     2941 aagctctagc aaaggagaaa ctctttatga tactgctgct aatttagatg ccatgagtcc
     3001 taatgctatt gttgtaagac acgcaaactc aggagttcct ttgatattag caaagcatat
     3061 gcattgtcca gttgttaatg gaggagatgg aaaacacgcc catcctaccc aagctttact
     3121 cgatttgttt acgatttata atcattttca aggtaatgtt gaaggtaaga aaatttgcat
     3181 cgtaggtgat atcaaaaatt cccgcgttgc agcgtccaat atagagcttt taagtagatt
     3241 taatcttgat attaccctag tagctccacc acattttatg cctaataccc atcttaaaaa
     3301 acattataag cttgatgaga atatcatagc aaattcagat attatcatga gtcttagaac
     3361 acaaacagaa agacataata aaaccgttta tgcttcactt aaagactatg caaatgattt
     3421 ttgcattcaa aaaagcttag taaaggataa aaagcttatt ttactacatc caggccctgt
     3481 aaatcgcaat attgacataa gcgatgaaat gatgagcaat gaaaggactt tagttttaaa
     3541 acaagttaaa aatggagtgg ctattagaat ggctgttctt aaaaaactca tactagaaaa
     3601 tgaaggataa aaaatgttag aatgggattt aagtgcttta tttcacgata aagaagcatt
     3661 gcaaaatttt acacaagacc aaatccaaca aagtttaaat tttaaaaaaa actatgaaaa
     3721 taaactttat acattaaatg ctaatgagtt tttacaagct ttaaaagatt atgaaaattt
     3781 aaatcaagcc cttggcaaaa tcatgactta tgcttatttg ctttttgcta aaaacactca
     3841 aaatggttct ttttatgcac aatacgaaga agaatgcaaa aaaatagaag aaaatttact
     3901 ctttttcgag cttgaatttt gcgagttagc tcctgagaaa agtcgagaat ttacaacttt
     3961 ttgcaaagat tatgattttt atctttctaa tttattgcaa aacaaacgct ataatcttag
     4021 caaaaacgaa gaacgcatta tgctttatct ttccaataca ggtgcaaatg cttttagtag
     4081 actttttgat gaaagtatga gtgctttaaa aatccctttt gaaggtaaaa aacttagcga
     4141 agaagaaatt ctaagcaaaa tgtatgatga aaatagaaag atacgcaaaa aagctgctaa
     4201 aaaattcagt aaagtcttac aaaaaaatag cagactttta agttttatta tcaatatgat
     4261 aaaaacagaa agaaaaaata taagcttatt aagaggttat gaaaatgctg aaatttcaag
     4321 acatatcagc aatcaaattt cacaaaaaag cgttgattct ttgatagcaa gtgcgcaaaa
     4381 acattttaac ttagtatcgc aattttacaa aagaaaaaaa caaattttag gctatgatga
     4441 gcttaaagac tatgacagat atgcacccat aggaaaagaa gcaagttttg attttaaaac
     4501 aagtaaaaat attgttttag aggcatttca agctttttct cctcaatttt atgatatagc
     4561 aaaaaatgct tttgatcaag gttggattga tgtttatccg caagaaaata aacaaggggg
     4621 tgctttttcg cattctgcaa cttctgatgc acatcctttt gttttattaa actacaccaa
     4681 taaaagacgc gatcttttta cacttgcaca tgaattagga cacactatcc atcaaaaact
     4741 ttcttataat gtaagctatt taaatcaaaa tacaccttta accaccgcag aaacagcttc
     4801 agtttttgct gaaatgctcg tatttgattt tattaaagat aagttaaaaa aagaagaact
     4861 cttatcttta tatgcaaata aaatcgaaga tatttttgca actttttata gacaaattaa
     4921 ttttacttgt tttgaaagac gcttacatgc tcaagaaaat gaacttagca ctgaagaaat
     4981 caataaaatt tggatggaag aatctcaaaa gatgtttcaa gacagcgtaa aacttacaaa
     5041 aaattatgct tcttggtgga gttatattcc tcattttatc cattctcctt tttactgcta
     5101 tgcttatgct tatgcacaac ttttagtttt agctctttat ggactttaca aaagtaaaaa
     5161 atgtgaaaat tttaaagaac tttatatcaa aatgctttct ttaggtggaa gcgtgagtcc
     5221 aaaagaacta gtaggaatgt ttggatttga tatagaagat gaaaattttt gggaaatagg
     5281 cataaaagaa attcaaaaac tcatcaatga attcatggag ttacaatcat gctagaaaca
     5341 atcttaaaaa atgaaaattt tatccatacc atgcaaaagc attgttatga agttatttca
     5401 caccttatag aagaaaatat agaattttcc atagttgcaa atacaaattt catagatttt
     5461 aaccctgaac ttcccaaaga gcttgatatt aaacaaaatc cttatgctct ttttgctctt
     5521 ggaggataca cctttgaatc catacaacta aataaagatt tcattcaatt tcacgcaggt
     5581 tttggaaatg atgattttga tagttttgta aaggttgatt taggagctat cacgcaaatt
     5641 caagtagaaa atagcatttt attcgttaat tttagtcttt ataaacgtga agatagcaaa
     5701 aatttacaaa aatctaaaaa tatattttta aataatccaa aaaataaaga tattttcaaa
     5761 aaatgaatct atttgaagat ttaaatgata gtcaaaaaca agcggtaagc cacattgatg
     5821 gagccatgct tatcctagca ggcgcaggta gtggaaaaac caaaactatc accactcgtc
     5881 ttgcttatct tatcggtgaa gtaggcatcc cctcacataa cactcttact cttactttta
     5941 caaataaagc agctagtgtt atgcgtcata gagcattaaa ttttctacaa ggcaatcaca
     6001 atcctttgct ttgcaccttt cataaatttg gacttttatt tttaaaactc cattttgaaa
     6061 gattggagcg taaaaatagt tttattgtta tcgatacaga tgatacaaaa aaaataatta
     6121 aagacttaat ccatgataaa aacaaagata atgtctatga tattatccaa tacatatctt
     6181 attgcaaaaa tgaaggcaaa agagtaagca atgtctttga agatttaaat ttactaaaag
     6241 aacataattt tgaaaaatat caaaatgaat acaaatttgc caactattac cgtgcttatg
     6301 aagaatactt attaaaacaa aattttgtag attttgatga tcttttattg ctaagcaatc
     6361 tcattttaga aaatgatata aattttgcca aagaacaaag cttactttat aattacatta
     6421 cagttgatga gtatcaagat actaatacct tgcaatataa aattctaaaa aatctatgtt
     6481 gtatgcatga aaatatcaca gttgttggtg atgatgatca aagtatttat agttggcgtg
     6541 gagcaaaaat tgaaaatatt ttaaattttc aaaatgattt taaaaatgtt aaacttgtaa
     6601 aacttgaaca aaactatcgt tcagtaggga ctattttaca agcagcaaat aatctcatat
     6661 ctcacaatga gcaacgactt ggaaaaactt taatctgcac taaagatact ggggaaaata
     6721 ttaaaatatt aaaaaacgaa aacgaaaaag atgaaggttt atatatcgct caagaagtga
     6781 aaaaattgct aaattctgga gtagaagcta aagagatcgc cattttattt cgagttaatg
     6841 cactatcaag agcaatagaa gaagcattta tgaagaaaca aatttcttat aaactactta
     6901 gtggtatgcg tttttatgag agattagaaa taaaagattt aatctcgtat cttagactta
     6961 tcttaaatcc aagcgatgat ttgtcgttta aacgtattat taatcgcccc aaaagatcca
     7021 taggagaaaa agccctaaaa aatttagaag aatatgcaaa aaaacgtcaa atttcacttt
     7081 ttgatgccct atgcgaaagc gatggtggtg taggaatttt aacaacaaaa aaagcacaaa
     7141 atgaagcaaa tatttttata caaaatattc acactctaaa aagctacgat aatgcaaaaa
     7201 aggtttttga caatatagaa gaattattta aaatcaaaga ttatttttca gagcaagatg
     7261 atggagatga aagaatcaga aatcttgatg agttttatgc taatctaaga gaaaaactca
     7321 aagaagatcc caaagcttct ttagaagatc tacttagtga aatttcttta ttaagcgatc
     7381 aagataattt agatgaagaa tgtgtttgct tgatgagtat tcatgctagc aaaggtttgg
     7441 aatttgatta tgtttttata ataggctttg atgaaggatt ttttccttta aatagcgaag
     7501 aaaatctcga agaagaacgc cgtcttgctt atgttggcat cactcgcgcc aagaaatttc
     7561 tcacaataag tgttgcaaat tctcgttttt atcatggttc aagagcaaat atcaatccta
     7621 gtcgcttctt agaagaaagt aaattaatca atgaaaaatc aaaaaatcaa aatatacaaa
     7681 aaactagttt ttgcaaagga gatctagtta aacataaaat ttttggcatt ggcagggttg
     7741 ttgaagttaa taaaagcgga aaagaggaaa agcttaatat taattttggt ggtataatgc
     7801 gtgtaatcat ggcaagcttt gtggaaaaag cagtatgaac aagatctttg cagcctttaa
     7861 accaaagggt ttgagttcta atgccttttt aagtacttta aagaaaaaat ataaaaataa
     7921 aaaagcagga tattctggca ctcttgatcc tttcgccaaa ggggttttaa tcgttgcatt
     7981 tggacaatac acaaaacttt tccgtttttt aaaaaaaacc ccaaaaacct ataaagctac
     8041 tttatggctt ggagtttact ccttaagtct tgatgatcaa aatataaaag aaattcaaaa
     8101 tataaaagaa tttgatcttg caaatttaaa acaaatcatt gatcaaatgc aaggaattat
     8161 ctcctataca ccacctcaat ttagcgccaa aagaatcaat ggaactcgcg cctatgaact
     8221 tgcaaaaaaa ggtatagaag caaatttaaa accttgtcaa atggaagtat ttgattgtaa
     8281 gatcttaagc tataatcatc cttttttaaa tattgaaatc acagtcagtg aaggtgctta
     8341 cataagatct tattgtgaac tttttgctag aaaactaggt attaatgcga ctttaagctc
     8401 tttagagcgc attaaagaag gcaaatttgt ttataataat gagaaaagct taaatgtgtt
     8461 aaaatacatt aacctaaagc caaattttat caaggattta aataaactcg aaaatggtgc
     8521 taaaattttt gtcgaagaat tagaatttca tgatgaagga gattattata ttgaaacaga
     8581 aaaatatttt agcataatta atattaaaga aaatacagta aaatatcttc taaataaggt
     8641 tgaaaaatgt taatattatc aagaaaagaa aatgaaagta taattatcgg agaaggtata
     8701 gaaatcaaag tcgttcaaac agggaaagga tatgccaaaa taggtataga agctccaaaa
     8761 tcccttatga tacttagaaa agaacttgtt caacaagtaa aggatgaaaa tttgcattct
     8821 gttgttcaga atgatattaa acttgatgac ttaagcaaaa aactaatcaa atgaaagctt
     8881 acgctaaagc aaatattttt ttaaaactta ccggttttga ctcaagaaaa tatcatcttt
     8941 tagaatcacg atttatactt ttaaaagatg tttttgatga gcttgagctt attgataaag
     9001 aatcagattc taaaaaagaa tttgaaatca ttagtaattt taaatgcgaa aataatatta
     9061 ttcaaaaggc ttatttgcta ctttctagaa gatataataa cgaattaaaa gaattattta
     9121 gcaaaaaaag tctaaaactc acaaaaaata tcccagtatg tgctgggctt ggtggtggaa
     9181 gtagcgattg tgcgagtttt ttactactaa taaatgaaac cctaaattta aaattaaacc
     9241 tacaagaact tataaattta agcatacaac taggaagtga tattgccttt tttttaagtg
     9301 gctttcactc tgctaatgta agtggctgtg gcgaaattat agaagaattt gaagatgaca
     9361 tacctaattt aaaatggact tttccacaaa tatcttgcca aactaaagct gtttatgatg
     9421 aatttgatag agaaatattt gactttcaaa aaaacaataa tcaagcgcaa atctacaaaa
     9481 aactcagcac aaaagagttg ttacaaaact ttaaaaacaa agaattaaat gatttattta
     9541 ctccttgtgc aactttatat cctaaaatga agtcttactt gcaagaagat ttttttctaa
     9601 gcggtagcgg tagtagtgtt tttaaggttg atcgatgaaa attattgcga gaaataaaaa
     9661 agctttattt gattatagca tcatagaacg ctttgaagcc ggaattgtcc ttaaaggaag
     9721 tgaagttgta gccttaagag caggaagagc aaatcttaaa gactcttttg ttcgcattat
     9781 aaaaaatgag atttttttac ttaattctca tatttcattg ctccatacta cacattcttt
     9841 ctataaacac gaagaaagag gtgctagaaa gcttttaatg catagaaagc aaattgataa
     9901 attattaggt aaagtaagta tagaaggata tactatcgtt gcattagatc tttattttaa
     9961 cacaaaaaat aaagtaaaag ctacccttgc tttagctaaa gggaaaaatt tgcacgacaa
    10021 gcgtgaaact ttaaagaaaa agcaagccga tttagaagct aaagctgcta tgaaaaatta
    10081 caaataaagg aaaataaatg aaaaaaattt cagccctatt tttaataagt ttagcatttt
    10141 ttcttaatgc ttgctccaag gaagaagaaa ttcaaaatga ttttatgttt gaagagtatc
    10201 acaaaggaga taaaatagtc ttaaatagtg taaatggtgg aagcaaaact ttaataagaa
    10261 cagataaagg ttttgtggtg gaaggagagg aaggaaaagt tctaatgttt gatttttttg
    10321 gcactttttg caccccatgt aaagaagaag ctttagatct tagcaaactt tggaaaaata
    10381 attctagcaa atttatcatt ataggactta cacattttga agatgttagc gatgaaacag
    10441 ttaaaaaatt cgcggatgat tatggtgctt actattttct aagcaatgac agctctaatg
    10501 atcgtattat tgctcaaatt ttaaaagata tagactatca aaatatggag caacttcctt
    10561 ttaaagttgt tttaaaaaat ggaatttatc aaaaaataag cgattactgg aataataata
    10621 ctccaacaaa tttttatctt ggtaaaattc caacagaact catgcaagaa gatttaaata
    10681 aaatctacaa aggaaaataa tgccaaaaac ccaaactcta gagcaaacaa aacttagtga
    10741 accaaaaatg tataaagtta tactcttaaa tgatgatgta acaaccatgg attttgttat
    10801 agaaattttg atgaatattt ttcatcaaaa ccttgagaaa gcaagtcaaa caatgttaga
    10861 aattcatcac aatggttctg gaatttgtgg catttacacc caggaaatag ctctttcaaa
    10921 acaaaaaaaa gttatggatg cggctaaact tgctaatttt ccactacaag caaaggtgga
    10981 agaagaatga aataccaaga aaatttacaa aaatatcttg ataatgccaa aaatctaagc
    11041 ttaataaatc accatgaatt tgttacctgt gagcatgtac tgtttgcatt actaaaacta
    11101 agcactgatt ttaaggatat atttgaagaa ttttcagatg gagatcttga acttctagaa
    11161 actgaattaa aaaattacat ttctcaaaac aatcaagtta ttaaacaaga aatagaacct
    11221 acaatatctg ttgttttaga tgaaatctta ctttcatcta aaaataaaaa taatgaaatt
    11281 aaaattatag attttttaga aaagctcata caggattcaa gaagttattc tagctatctc
    11341 ttaaaaaaac acaacataaa tcttaacaaa attcaagaac ttcaaaatca tgaaaatata
    11401 caaaatttaa acaaccacac aagtgattta acacttttgg ctcaaaatgg caagattgat
    11461 cctttaatag gaagaaaatt tgaacttgaa agaatgatgc aaattctttc acgtcgcaag
    11521 aaaaataatc ctattttagt aggagaagca ggagttggca aaacggccat tgtagaagga
    11581 ttagcattag ctattgcgga aaaaaaggtg cctaaaaact tacaaaatgc aaaaattttt
    11641 agtcttgata tggctagtat acttgcggga acaaaatacc gtggagattt tgagaaaaga
    11701 attaaagaaa ttttaaatga acttgagaaa atacccaatg ctattttatt tattgatgaa
    11761 attcacacta tagtaggagc tggaagcaca ggagaatctc atactgattt ttccaatctt
    11821 ttaaaaccag ctctaagtaa tggaacttta aaatgcatag gtgcaacaac ttttatggaa
    11881 tataaaaata cttttgataa aaataaaccc ctaagtcgcc gttttgctaa aataaatgta
    11941 gatgaaccaa gccaagaaga aagcttgcaa attcttaaag gattaaaaaa caaatatgaa
    12001 gaatttcatc atataaaatt aaacgatgaa attcttcaat atgctgtaat ttggggtaaa
    12061 aaatttttta atgataaatt tttacctgat tgtgctatag atctgatcga tgaacttggc
    12121 gcttcttttg ctttaaatcc aaaagctaaa aaaaatgcca atttaaaaga tttagaaaat
    12181 gttttagcaa aaatgaccca ccatcacaaa atatttgaat tcgatcaaaa taaagcttta
    12241 atgaatttaa aaacaaattt aaaagcaaaa atttttggcc aagatgaagt tatagatagc
    12301 cttgtttcat cacttaagca aagttttgcg ggatttaaaa attccaatac accacgcgga
    12361 gtgtttttgt ttactggatc aagtggagtt ggaaaaacag aactttgcaa agctttagct
    12421 gaatttttag gtttaaattt agaacgcttt gatatgagtg aatatgcaga aaaacatact
    12481 ataagtaaac taataggatc tccagctgga tatataggtt ttgaagaggg tggactttta
    12541 agcaatgcta ttcgcaaaaa tcctttcagt cttgttcttt ttgatgaaat agaaaaggct
    12601 catcctgatt taagcaatac ctttttacag atttttgaca atgctgaact caccgacaat
    12661 agcggtctta aagtagattt taaaaataca atcattatta tgacatctaa tctaggactt
    12721 aaagaaagca atgagcttgg ttttttaagt aaaaatgaag aaaaaagtaa tcgtgctatc
    12781 aaagattttt ttgctccaga atttattaat cgcattgata aaattttaca ttttaatgat
    12841 ttaaacgatg ctatacttgt taaaattatc gaaaaagaac ttgatgaaat ttctaaaaat
    12901 ttaaataata taaaattatc aatggatgat aaagccaaaa tttatttagc taaaaaagcc
    12961 tataataaag aatttggagt aaggctttta aaacgcataa tttctgagga aataggagaa
    13021 aaaatcagtg atgaaatttt atttggaaag cttaaaaaag gtggtatagc taaaatcaaa
    13081 cttggtaaaa atggaaagct caaatttata ttctaaatta ctcaatgcgc ctaaaaatgc
    13141 tcctgtattt ttaagtcaaa atttagaagc tgattttatt gtaaaagctt atacttttgg
    13201 tctattccca tggacaagta aacctgtaac ttggtggtgt ccagatccta gatgcatttt
    13261 aattccaaat caaattcaca tccaaaaaaa tatgaaaaaa tttattaatc tctatcaaat
    13321 taaacttgat tatgattttt taaaattaat tacattatgt cgcgatacac gctctcaaag
    13381 ctggatagat gatgaattta ttaccactta ttataagtta tttacccaag gctatgcgca
    13441 tagccttgaa ctttatgaaa ataatgaact tataggtgga atttatggtt taattttagg
    13501 caaggttttc tttggtgaaa gcatggtaag cattaaaaaa aatgcatcta aagttgccat
    13561 gattaaactt tgtgatttat taaaacctta tgattttatc atagattgtc aagtttataa
    13621 ccaacattta gaatttatgg gtgctcataa tatttctagg aaagaatttt taaatatttt
    13681 aaaagaaaaa tgcaatcaag aaagtggttt taaaaatttt aaagatttaa ttacttaaaa
    13741 ataagcgtga aaatcacgct tatgacatcg ctttagcaac ttcagcagag ctttcacgaa
    13801 ttttctccat acactctctt gcttcttttg caagttcaac actctgatta acatcctcta
    13861 aaccgctttt aatactctca accacttgtg atgtaacatt gcgaatagaa ttaatcgtag
    13921 tggtaatttc attaaccgaa tgccctgttc tttcagctaa atttcttact tcatcagcaa
    13981 caacagcaaa acctctacca tgttcaccag cacgtgctgc ctcaatagca gcatttaaag
    14041 caagcagatt agtctgatca gcaatatcac taatagtttg aataatagat ttaatttcat
    14101 ctgattgttg atttaaagag gaaacaagat ttgaactttg agacatcata tcagcaatat
    14161 tctgaacatt tgaaacagtg ttttcaatta cacgatctcc atcttgagta agattatcat
    14221 ttttttctgc aagttcgctt atgagacgaa gtttttcttg atctttttta acttgttcgc
    14281 ttatatctgt agcaaattta ataaccttgt aaatttttcc atcatcattt ttaaccggat
    14341 tataacttgc ttcaaggtat acttttttat tatttcttcc gtatcttata tatttacctg
    14401 attgaaattt accctctctt aaatcttccc aaaattgaac atagtcctta gagtgtctat
    14461 aattagaatc acagaacata ctatgatgct ttcctttaat ctcatcaata ttaaaatcca
    14521 tagttcttaa aaaattttca ttagccgtaa taatagtccc atcaggttta aattcaataa
    14581 tagccataga acgattagca gcagcaatag tatttctaag atcaagcatt tcataatgtc
    14641 tttgagttat atcattggca aatttaataa ttttataaac ataaccatta ttatcactaa
    14701 ttggaagata atttgcttct aaataaacat ctatcccttc cctcccttag ctatacgtct
    14761 aaaaagacca cttctagctt ttccatctct taaatctttc caaaaatcac tatatgctga
    14821 agaattaaca acttcaggca aacaaaacat actatgatgc ttacccttga tctctgaaag
    14881 ggagtatttc atagttgtta aaaaattttg atttacctct aaaataacgc catcggtagt
    14941 aaattcaatt accgccatgg tattcccaat agatcttaaa atatctccta aaccattaca
    15001 ttttttttca agttgttcaa ttattttagt attatttttc ttagcaccaa acataaaact
    15061 caccttttta ataataaatt attttaaaat tatatcatat ttatatagta ttatttactt
    15121 aaaattatat taatttataa gttaaatata tcctttaaac ctacaataat catcttaaac
    15181 cccatagcaa caataaatac ttgtgctata cgagaaaaaa catgtaaaat caattttcca
    15241 actatttttt ctatagtagc tgcaaaatga aaaagtataa acataaaaat aaaagctatc
    15301 attactccgc caagagcaac atcaagccca ccatcttcgg ctataacaat aacgctagct
    15361 aaagttccag gcccaacaag cataggaaat gccataggta ttaaactctg tcttaaaatt
    15421 tccttatcat ccatatcttg ataagaacta aaatccttag ttgcaatttt tgttgaaaaa
    15481 agtaaatttt taatagccat tataataaga accaaaccac cagaaaccct taaatcatcc
    15541 aatgaaactc taaaaatata gttcataaat aaaggtcctg ataataaaaa caccaaaact
    15601 atagtaaaag ctgtatagag aatagttcta aaaagttttt ttcgaagcat taaaggcaat
    15661 ccatcactca tagccaaaaa ttgagttaaa ttaccaaaag gatttaatat agcaagtaaa
    15721 gtaattgcag caaaaaacat caaataaagc tcagaaccca tactagaaaa cactatcaat
    15781 ccttagtttt tacaaattcc aaagaaatag aatttacaca atgtcttaca tttttagcag
    15841 aaaatccttc tccttcaaaa acatgaccta aatgtccatt gcaatttgca catacaatct
    15901 cggttctaat cccatcttta tcaggaattc ttttaacagc cccttttatt tcatcatcaa
    15961 agctaggcca tccacaacct gatttaaatt tatcttcgga tttataaagc gaagctccac
    16021 attgcttgca ttgatagatt cctttttcat aaaaatcatt atatttccca ctaaaaggag
    16081 cttctgttcc tttatttaaa attacttttt tttcttcttc atttaattct ttcatgatct
    16141 acccttgt
//
LOCUS       DAPIWJ010000035        16012 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.035, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000035 DAPIWJ010000000
VERSION     DAPIWJ010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16012)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16012)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16012
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.035"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..126
                     /locus_tag="RJ259_000873"
     CDS             <1..126
                     /locus_tag="RJ259_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HDV7366593.1"
                     /translation="VAQIDQTTKDNVEIANESAIISSTVSDIANNILEDIKKKRF"
     gene            complement(169..2535)
                     /locus_tag="RJ259_000874"
     CDS             complement(169..2535)
                     /locus_tag="RJ259_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HDV7366594.1"
                     /translation="MRILFLILLSFLNAFAFELVLNTGRENNQAFAVLHASNDLEFTC
                     QKFITEAKVHFECDIVGMVDNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTS
                     QNIYIDKELSSSSSHKSKAFTFIFTPELAPIKDYDGLDFNINFPHESLPYVGALDLNS
                     DPVVIPQSADINTYLRIKKEYDKANYNQVVIDAQNAINRYRGSIFTSEFILYKLRAQN
                     KLYTQDPSMRDQQILEKMIDDAKNWTRTFTSDKNFSEVLHIMLRTYIALAQRADVEYT
                     MSILDNEQPNNYFTQLSKLDYADYIYNLNEKEKAVNIYENTYFNTKNLDLAARAAMSL
                     AKNLLSNEQVNKAIEYINTILKANPEYFGKDIPRSLELAKLFNQKGQFDISASIYEDA
                     FAKMSKLDPSYEETLKDLALVLSHANRSSDAKKYLDLYMDDYLDGKYLDEIKKASDEV
                     FFALGDNNASFLHQRYTDLMKQYANKDENIANKALDEDVALYYKEGNFSAILAYKDLI
                     ESKKIPNATQFLEKAAINDLKNAIKADNCINAANIFMRFSAYDIGQKIENKKQMLACL
                     IRTSNVEQALDYIDKNYNEDSIFYGLQKASILFDNKQYPQVIKISKDIANSRILKSDD
                     ENFKAYYLQFLSLLRLNDYNQAIKILQILESFPMNFSMVEAYDALLSYANDHNMQTTI
                     LTYAPKAIDYQNFKGINLFSPNLEFIYLDALTKINKNEESLAVLTDLLKLKLSDEDRA
                     RALYIQALTYERMQNIQAEKESLKQCLEIKSASNWQNLCKSKNQILNQ"
     gene            complement(2557..3945)
                     /locus_tag="RJ259_000875"
     CDS             complement(2557..3945)
                     /locus_tag="RJ259_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HDV7366595.1"
                     /translation="MLNNFLNLELLNISLSYPFLFLITTAIVLLLCSGFWKFHRSFYI
                     GISSLSLIVSAFLILNNANAQGLEAKAFLATLNNDIVSFYASLVILCFSFLYLLMQKE
                     ENQGEFYALFLFMIASLLLMVSSSNLVLIFIGLESSSLALYTLIAMRGSDNAISSAIK
                     YFSVAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDPMLLGAGVMIFVLCAIK
                     LSLAPFHFWLKDVYYAAHTNLVAFISVVPKVAMLVVVIRLFDFLNNTGFEYIIIVLAI
                     FSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLVACIPLLKEQNFDGILLAIFGYWTLF
                     AFANYAVFMILSNYENNSYESLNGLLVKKPLIAFCLSISVLSLAGIPPFGVFWGKFMI
                     LNTAILNGYWYLALFVALSSVIMLYAYLKILIHALFMKNDRVHNIKFSFIQNFILAFC
                     VCVSTFVILLML"
     gene            complement(3935..5422)
                     /locus_tag="RJ259_000876"
     CDS             complement(3935..5422)
                     /locus_tag="RJ259_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HDV7366596.1"
                     /translation="MLNYLIFFPLISAFVVLLLNRGGVKVFSVVVSFMILALNLDIFA
                     DFLQGVSFDYNLSFKILKFFSFHVGVDSIALVLILLSSLMIFLSFLFLKLEQKALISC
                     IFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSIL
                     MLVALIYQAYLNYQLLNIFTFDLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPL
                     HTWAPKVYANSPILVSVMLVVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVY
                     NALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGALFLM
                     VELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK
                     INLFYALLAGLVIILGAIYMFAVFRKIFFMQKQSFIEGFSLLFREIVALVCIVVMIFG
                     LGLMPNILLKPIQKDVDNLIKTMNIRAVEQNTLDFLSKIGEANVK"
     gene            complement(5424..7214)
                     /gene="nuoL"
                     /locus_tag="RJ259_000877"
     CDS             complement(5424..7214)
                     /gene="nuoL"
                     /locus_tag="RJ259_000877"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HDV7366597.1"
                     /translation="MQNLALISLFSPFIAFLFASCFALSEKKQFVGIICSLLVALSAF
                     CSLYLLFCNEAFNVSLFEWFAGVNFGFDIDAISLTMMSVVGIVATCVHFYSIFYMAHD
                     EGFNKFFAYLGLFVFSMLFLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNATYSFAAN
                     EAFIMNRIADLGMLLGIFWLYLQAGTLKYDEVFSMAQSLDHNALILIATCLFIGAMGK
                     SAQFPFHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRASTLYDLVPEVSYIIALLG
                     AFVAIFAASMALVVRDLKRIIAYSTLSQLGYMFVAAGLGAYGIALFHLATHAFFKSLL
                     FLGAGNVMHAMNDKLDIKKMGGLFKPLKITAILMCIGSLALAGIYPFAGFFSKDLILG
                     YSFISFHHGIFLVLLIAAFLTAFYSFRLLMLVFFTPARHDEHPHEASKIALLAMSPLM
                     VLAIIAGFFEHSFFEYLSTKLVFIDAQNQIVMICASVAAILGAILAIFAYKNSWFKES
                     IEENKIHKLLSNDYFIPQFYHQFIVSKYESLCAILKHCDLYIFDRIVEKIALYSQNIS
                     QKMIMPNSLNLMLRFLVAAFVILLILVWMV"
     gene            complement(7216..7512)
                     /gene="nuoK"
                     /locus_tag="RJ259_000878"
     CDS             complement(7216..7512)
                     /gene="nuoK"
                     /locus_tag="RJ259_000878"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HDV7366598.1"
                     /translation="MIEKYFFIAILMFVIGLVGILKRQNLIMLFISSEILLNSANLAL
                     VAASKMHNDLNGQVFALFIMGVAACEVAVGVALCVLWYRRKGTLELKSLKEVEA"
     gene            complement(7509..8027)
                     /locus_tag="RJ259_000879"
     CDS             complement(7509..8027)
                     /locus_tag="RJ259_000879"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HDV7366599.1"
                     /translation="MIENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGF
                     YFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAIL
                     LLAMLIGFKYQNISTDLPLNDPALFDFNKQLALAIFSKYLLAFEFIAILLLIALVCAI
                     VLTHKELTKEKQ"
     gene            complement(8024..8665)
                     /gene="nuoI"
                     /locus_tag="RJ259_000880"
     CDS             complement(8024..8665)
                     /gene="nuoI"
                     /locus_tag="RJ259_000880"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HDV7366600.1"
                     /translation="MKNYYLVDEKRKTPVSTWEKISQALRRSVKLELFVGLFVMMREL
                     LKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMET
                     SLDENGRKKVENYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQRSYFGYKQDFL
                     TPIDKLKNQVEFEGAGSLRKDANLWVKKTPNYYDAMLESALENQNTQEQGENK"
     gene            complement(8675..9673)
                     /gene="nuoH"
                     /locus_tag="RJ259_000881"
     CDS             complement(8675..9673)
                     /gene="nuoH"
                     /locus_tag="RJ259_000881"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HDV7366601.1"
                     /translation="MSDFAFFALEALIKCIIVIAIFASLAGLATYAERKVLAYFQRRI
                     GPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKFIFAIAPLISAICAFVSLAAIPMLP
                     EFTLFGRVIQPIVADINVALLFVIGTSGLCFYAVFLGGLASNNKWSILGAARGLVSII
                     SYESVGALALIAIIMLVGSFSLVDINNYQSDGFFSWLIFKQPLAFVLFIIALFIETNR
                     TPLCLTENDAEIVAGYGTEYSGLRWGMFFIGEYTSMIAGAILVTLLFLGGFNSFWIIP
                     GWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMKMCYLILIPLAVLNLLITALTVLL"
     gene            complement(9666..12128)
                     /locus_tag="RJ259_000882"
     CDS             complement(9666..12128)
                     /locus_tag="RJ259_000882"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HDV7366602.1"
                     /translation="MTVKINGINCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLAC
                     RMCMVEADGKKVYSCNTKAKEGMVVESDLKNLWDERNEIMQAYCINHPLECGVCDKSG
                     ECELQNFTHKSRVNVQKHWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESA
                     LKTVPRGGDSVDNSFKESMGKDAYAIWTKFQKSLIGPANGDTLDCSFCGECTSVCPTG
                     ALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDIKQSGISNQKEKIYRVSNDFAFA
                     SLNKAARFAFDTQNEADKDEKAFKELVELFEKNEIKNIKFNSFITNEEALILQNLKKK
                     FNLSLINEEALKFKEFLQEFIANSGEFYSANTQDITKSDFLVVAGMLLRYDAPTLSYK
                     INNALVMNKGSGLYFHPMEDMGIAKYSKNFISHIHKSGDEEQILYFLLQKFSQDEGIK
                     THLAEFFVSENKEIEESINEEVVEQVIEKDEEGNEIQKEVKKVVPKKVKKIIEVQRSI
                     FAKNLGIDEDKLEDLLLKKANFTLVIGSDFYFHKNAKKLAKLLALIQNTTPFKVFLNP
                     THTNTLGVAMICDLDKNTQEGKTLGYNEKGDFSFSYEEHANLASASLNQQEGTFLNYD
                     KRVVPTNAALEFKGYFLNDLANALGFDEEYTINYTKRLPINKGFSPIDFDHLDNFYTN
                     AGDCKRGYELNLECFKQVAKKEFISPNFENLNPKEDEILLYSANPSYQFGRFSNRASA
                     INEVIFLGVSENLAKEKNLKDKDLVKLKIKDKELSLSVRVDKDIKNGAFLPYFDEKLD
                     TLSFFDERFVVANLEKLGANHE"
     gene            complement(12125..12817)
                     /locus_tag="RJ259_000883"
     CDS             complement(12125..12817)
                     /locus_tag="RJ259_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366603.1"
                     /translation="MIYDNALCFLDMPSLKNKNLCEKIGVNSINISCLEDKNLKAKFY
                     KCEIASLSFVLALLCKLSDEGQFSDLDEGYLSAESCFGEEEAGEVLAFLKEAKYLIID
                     KNIHFYKDSENIKYFLNFLSVKYELKILDSDEEECDFKKAKLNTLKELDNYDGLVLFR
                     ANLQDKNLHCSKQFLQIAKCKDQSEVKILAKDFSFKTKLCLDENLQGTIAFLNYENNG
                     FDFTPIRIKEAK"
     gene            complement(12814..13041)
                     /locus_tag="RJ259_000884"
     CDS             complement(12814..13041)
                     /locus_tag="RJ259_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366604.1"
                     /translation="MRRVDLRKSKELFEDLAQIIKEAKQGEVLVVLFEIGDFSPVEKS
                     FSFVKEQGCEFLNSLKFNQVDWTIVIKKERV"
     gene            complement(13038..14264)
                     /gene="nuoD"
                     /locus_tag="RJ259_000885"
     CDS             complement(13038..14264)
                     /gene="nuoD"
                     /locus_tag="RJ259_000885"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HDV7366605.1"
                     /translation="MQIPSKLKPYYENIAFEQEDSKMIINLGPQHPSAHGNLRLILEL
                     DGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLC
                     GLEIPRRAAVIRMILLELNRITSHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKY
                     CGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFLNDLKDYEDLLDDNRIWRLRTENV
                     GVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEVEFGVPYATQGDSYARYKVY
                     MQEFRESLKILRQCATLYKDTPPEILATHPEYVSASKEQILTQNYSLMQHFVLITQGL
                     KPPKGEVYVPTESPKGELGFFIYSDGTGRPYRLKARTPSYWHCAFFEEMLVGTYLADV
                     VAIMGNVNIVLGEIDR"
     gene            complement(14266..15060)
                     /locus_tag="RJ259_000886"
     CDS             complement(14266..15060)
                     /locus_tag="RJ259_000886"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HDV7366606.1"
                     /translation="MMRKYSDKKNAQTQNYYKDRFYHAPHTVKSDVNESVFKEDFEVL
                     KTQVEILNSFVELDFWVIEIKKEDNVKTLQMLKTLGYLSFTEASAIDFIADKNGFEVF
                     YQLLNLEKKLRVRIKTFVGVKERLQSVAHVFKGANWSEREIYDMFGIFIINHPNLKRI
                     LMPDDWFGHPLLKTYPLKGDEFARWYEIDKIFGKEYREVVGEEQRDSGFADDKDTLNF
                     ARLYHEVPKGGQKKEISFKQEYQEDEGVAFVKKVKRDEAKILEKRR"
     gene            complement(15057..15560)
                     /locus_tag="RJ259_000887"
     CDS             complement(15057..15560)
                     /locus_tag="RJ259_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HDV7366607.1"
                     /translation="MAEHQVNYASGLPVVLTSVDKLVQWGRSNSLWALSYGLACCAIE
                     MMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPDPKWVISM
                     GSCANTGGMFNTYSTVQGVDRIIPVDIYVPGCAPRPESFQFALMILQKKIRKEKASRK
                     IAPKRLI"
     gene            complement(15542..15931)
                     /locus_tag="RJ259_000888"
     CDS             complement(15542..15931)
                     /locus_tag="RJ259_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HDV7366608.1"
                     /translation="MSHIDASHPYFGIFLMLVLASVIFFGLVFLASKIGNNFAAKNRK
                     KLGLGIYECGPIPVKQANKINSQFFIIALIFILLDIEVVFLFPWALIFKDLGWFGFLE
                     VFVFIVLLGVGFLYAYKKGAFAWQSIK"
BASE COUNT         5992 a         3033 c         1917 g         5070 t
ORIGIN      
        1 gtagctcaaa ttgatcaaac tactaaagat aatgttgaaa ttgctaatga atcagctatt
       61 atttctagta cagtaagtga tatagctaat aatatcttag aagatattaa gaagaagagg
      121 ttttaacctt agataactag ccaaaaagct agttatctct aaatttactt attgatttaa
      181 aatttgattt ttactcttac ataaattctg ccaatttgaa gcacttttga tttcaagaca
      241 ttgttttaaa ctttcttttt cagcttgtat attttgcatt ctttcataag ttaaggcttg
      301 gatatataaa gctcttgctc tatcttcatc tgaaagtttt aatttaagta aatctgttaa
      361 aacagctaaa ctttcttcat ttttattgat tttagtcaaa gcatcaagat atataaattc
      421 taaattagga ctaaaaagat ttataccttt aaaattttga tagtcaatgg ccttaggtgc
      481 gtaagttaaa atcgttgttt gcatattatg atcattagcg taagaaagta aagcatcata
      541 agcttccacc atactaaaat tcattggaaa actttctaaa atttgcaaaa ttttaatggc
      601 ttgattatag tcatttaaac gcaataaaga taaaaattgc aaataataag ccttaaaatt
      661 ctcatcatca ctttttaaaa ttctagaatt agctatatct ttagaaattt taatcacctg
      721 aggatattgt ttattgtcaa aaagaataga tgctttttga agaccataaa atatagaatc
      781 ttcattataa tttttatcta tataatcaag tgcttgttca acattagaag ttctgataag
      841 acaagctaac atttgttttt tattctcaat tttctgacct atatcataag cactaaaacg
      901 cataaaaata tttgcagcat tgatacaatt atcagctttt atggcatttt ttaaatcatt
      961 aatggctgct ttctctaaaa attgagtagc atttggaatt tttttacttt ctataagatc
     1021 tttataagct aaaatggcac taaaatttcc ctctttataa taaagtgcaa catcttcatc
     1081 taaagcttta tttgcaatat tctcatcttt atttgcatat tgcttcatta aatctgtata
     1141 acgctgatgc aaaaagcttg cattattatc acctaaagca aagaatacct catcacttgc
     1201 ttttttaatt tcatctaaat acttaccatc taaataatca tccatatata aatcaaggta
     1261 ttttttagca tcactagatc tgttagcatg tgataaaacc aaggctaaat cttttaaagt
     1321 ttcttcataa cttggatcaa gtttggacat tttagcaaag gcatcttcat aaatacttgc
     1381 acttatatca aattgtcctt tttgattaaa taatttagca agttctaaag atcttggaat
     1441 atcttttcca aaatattcag gattggcttt taaaatggta ttaatatatt ctatagcttt
     1501 atttacttgc tcatttgaaa gcaaattctt tgccaaactc atagctgctc ttgcagctaa
     1561 atctaaattt tttgtattaa aataagtatt ttcataaata tttacagctt tttctttttc
     1621 atttaaatta taaatatagt ctgcataatc aagttttgat aactgagtaa aataattatt
     1681 aggttgttca ttatctaaaa tcgacattgt atactctaca tcagcacgct gagctaaagc
     1741 gatataagtt cttaacatta tatgtaaaac ttctgaaaaa tttttatcac ttgtaaaagt
     1801 acgcgtccaa tttttagcat catcaatcat cttttctaaa atttgttgat cacgcatact
     1861 tggatcttga gtgtaaagtt tattttgagc tcttaattta taaagtataa attcactagt
     1921 aaaaatactg ccacgatatc tattgatagc attttgtgca tcaatcacca cttgattgta
     1981 attagcctta tcgtattctt ttttgatgcg taaataagta ttgatatctg cactttgagg
     2041 aataacaaca ggatcagaat ttaaatccaa agctccaaca taaggcaaac tctcatgtgg
     2101 aaaattgata ttaaaatcga gtccatcata gtctttaata ggtgctagtt ctggtgtaaa
     2161 aataaaagta aaagccttac ttttatgcga acttgatgaa ctgagttctt tatctatata
     2221 aatattttga gaagtgtcaa acattcttgc ttgtattttt ggcaaaatga tcattttaat
     2281 tttttgagct tcttgtataa attttaaatc aaaagcagaa aaactctgat cttttaattt
     2341 attatcaacc atacctacaa tatcacattc aaaatgaact tttgcttcgg taataaattt
     2401 ttgacatgta aattctaaat cattactcgc atgtaaaact gcaaaagctt gattattttc
     2461 gcgacccgtg tttaaaacaa gctcaaaagc aaaagcattt aaaaaactta ataaaattaa
     2521 aaataatatt ctcataaaat aattatagca aaactcttat aacattaaca atataacaaa
     2581 agtgcttaca caaacacaaa aagctaaaat aaaattttgt ataaaactaa acttaatatt
     2641 atgaacccta tcatttttca taaataaagc atgaattaaa atctttaaat acgcataaag
     2701 cataataaca gaagataaag ccacaaaaag cgccaaatac caatatccat ttaaaattgc
     2761 tgtatttaaa atcataaatt taccccaaaa cactccaaaa ggcgggatac ctgctaaaga
     2821 aagcacacta atgcttaaac aaaaagcaat taaaggtttt ttaaccaaaa gcccatttaa
     2881 actctcataa gaattattct cataattgct taaaatcata aatacagcat aatttgcaaa
     2941 agcaaataaa gtccaatatc caaaaatagc aagcaaaatt ccatcaaaat tttgttcttt
     3001 taataaagga atgcaagcta ccaaaaccaa agaagaatgc actacagaac tataagcaaa
     3061 catttttttg atattgtttt gacttagagc cgcaaaagca cctataagca tagaaaaaat
     3121 cgctagaact attatgatat attcaaaacc tgtattattt aaaaaatcaa acaaacgaat
     3181 aaccacaacc aacatggcaa cttttggcac aactgaaata aaagcaacca aatttgtatg
     3241 tgctgcataa tacacatctt taagccaaaa atgaaaaggt gccaaagaaa gcttgattgc
     3301 acaaagaaca aaaatcatca ctccagcacc caaaagcatg ggatcttttt gaaactcatt
     3361 ttttaacgct aaattagcag ataaatctaa agttcctgtt tttaaataaa taaaagctac
     3421 agccataaca aaaaacccag ctcctacagc cgctacacta aagtatttta tcgcacttga
     3481 aatagcatta tcacttccac gcattgctat taaagtataa agtgctaaag aagaactttc
     3541 aagtcctata aaaataagta ctaaatttga gcttgaaacc atcaaaagca aagatgcaat
     3601 cataaataaa aataaagcat aaaattcacc ctgattttct tctttttgca ttaaaagata
     3661 taaaaatgaa aaacacaaaa tcaccaaaga agcataaaat gaaacaatat cattatttaa
     3721 agtagccaaa aaagcttttg cttctaaacc ttgagcattt gcattattta aaatcaaaaa
     3781 agcacttaca atcaaagaca aagaacttat gccgatataa aacgatcgat gaaatttcca
     3841 aaaaccagag caaagcaaaa gaactattgc agttgtaatt aaaaataaaa atggataaga
     3901 taagcttata tttaaaagtt ctaaatttaa aaaattattt aacatttgcc tctcctattt
     3961 tagataaaaa atctaaagta ttttgctcaa cagctctaat attcattgtt tttataagat
     4021 tatccacatc tttttgtatc ggctttaaaa gtatatttgg cataagccct agtccaaaaa
     4081 tcattactac aatgcacaca agcgctacta tttctctaaa aagtaaagaa aaaccctcta
     4141 taaagctttg tttttgcatg aaaaatattt ttctaaatac tgcgaacata taaatcgctc
     4201 ctaaaataat caccaaacct gccaacaaag cgtaaaataa attaatcttt gctataccta
     4261 aaagaattaa aaactctccc acaaaagaaa cagttaaagg caaagaaaca ctcgcaagta
     4321 aaatgagcat aaagaaaatt gaaaataaag gtgctttttt ggctaaagaa tggtaaaaag
     4381 aaatatcata agtatgatat ctttggtata aaagttcaac cattaaaaat aaagctcccg
     4441 ttacaatacc atgtgcaaac atataaaaaa ccgcaccact aatacccaaa gcatttaaag
     4501 aaaaaattcc caaaatcatc acaccaagat gtgaaataga actataagca atcaattctt
     4561 taatattttc tgctctataa gcaattaaag cgttataaac gatacttact atacataaag
     4621 ctacaattaa aggcataaaa tacacactcg catctggaaa aagtggtaaa caaaaaagta
     4681 aaaatccaaa aggagccatt ttaaaaacta caagcattac agaaacaagt ataggcgaat
     4741 ttgcataaac cttaggtgcc caagtatgaa gtggaaataa aggagctttg atagcaaaag
     4801 cgataaaaaa tgctccaaaa agtaaaagtt gctctgtaaa atttactgct gaggcattat
     4861 ttttccaaat ttccaagtca aaagtgaaga tatttaaaag ctgataattt aaataagctt
     4921 gataaatcaa tgctacaagc attaaaattg aacccgcaaa agcatagata aaaaatttca
     4981 cccctgctct aaaatcttta ccataaactc ccataatata aagcaaaggc aaaagagaaa
     5041 attcccaaaa aacataaaac aacaaaccat cttttgcgct aaaaagtccc ataatagcaa
     5101 attctaaaaa gaatatacaa gatataagcg ctttttgttc tagtttcaaa aataaaaagc
     5161 ttaaaaatat catcaaagaa cttaaaagta tcaatacaag tgcaatactg tctactccta
     5221 catgaaagct aaaaaatttc aaaattttaa aagagagatt ataatcaaag cttacccctt
     5281 gtaaaaaatc cgcaaaaata tccaaattta aagccaaaat cataaaactt acaacaacgc
     5341 taaaaacctt aacgcctccg cgatttaata gcaaaaccac aaaagcagaa attaaaggaa
     5401 aaaatatcaa ataatttagc attttacacc atccatacta aaatcaacaa aatcacaaaa
     5461 gctgccacca aaaacctaag cattaagttt aagctgtttg gcataatcat tttttgtgaa
     5521 atattttgag aatacaaagc aattttttca actattctat caaaaatata aagatcacaa
     5581 tgctttaaaa tcgcacataa gctttcatat tttgaaacga taaattgatg atagaattga
     5641 ggaataaaat aatcattact taaaagttta tgaattttat tttcttcaat actttcctta
     5701 aaccaagaat ttttataagc aaaaatagcc aaaattgcac ccaaaatagc tgctacactc
     5761 gcacaaatca ttacaatttg attttgcgca tcaataaaaa ctaattttgt gcttaaatat
     5821 tcaaaaaaac tatgttcgaa aaatcctgca ataatagcta aaaccatcaa aggactcata
     5881 gccaaaagtg cgattttact tgcttcatgt ggatgttcat catgtcttgc aggggtaaaa
     5941 aataccaaca ttaaaagtct aaagctataa aatgctgtta aaaaagctgc gattaagagc
     6001 actaaaaaaa taccatggtg aaaagaaatg aaagaatatc ccaaaatcaa atctttagag
     6061 aaaaatcctg caaaaggata aattcctgct aaagctaaag atcctataca cattaaaata
     6121 gctgtaattt ttaaaggttt aaaaagtcca cccatttttt taatgtctaa tttatcattc
     6181 atagcatgca ttacatttcc agcgcctaag aaaagtaaag atttaaaaaa agcatgcgta
     6241 gctaagtgaa ataaagctat accataagcc ccaagtcctg cagccacaaa catatatcca
     6301 agttgcgata aggtagagta agcaataatg cgttttaaat ccctaaccac caaagccata
     6361 gaggctgcaa aaatcgctac aaaagctcca agtaaggcaa taatataaga aacttcagga
     6421 actaaatcat aaagcgtact cgcacgaatt accaaataaa cccccgctgt taccatggtt
     6481 gctgcatgga ttaatgcaga aacaggagtt ggccctgcca tagcatcagc aagccaagtg
     6541 tgaaaaggaa attgtgcaga ttttcccata gcccctataa ataaacaagt tgcgattaag
     6601 atcaaagcat tgtgatctag gctttgtgcc atggaaaaaa cttcatcata ttttaaagtt
     6661 cctgcttgca aataaagcca aaaaattcct aaaagcatac ccaaatccgc aatacgattc
     6721 ataataaaag cttcattagc cgcaaaagaa taagtagcgt ttttatacca aaaacctatg
     6781 agcaaccaag agcaaagccc aacgccttcc caacctacaa aaagtcctaa gaaattatca
     6841 ctcataacta aaaaaagcat agaaaagaca aaaagcccca aataagcaaa aaatttatta
     6901 aaaccctcat catgagccat ataaaaaata ctataaaaat gcacacaagt agctacaata
     6961 cctacaacac tcatcatagt aagcgaaata gcgtctatat caaagccaaa atttactcca
     7021 gcaaaccatt caaacaaact cacattaaaa gcttcattgc aaaaaagcaa atacaaagaa
     7081 caaaaagcac tcaaagcaac tagaagtgaa caaattatcc ctacaaattg ttttttctca
     7141 ctcaaagcaa aacaacttgc aaacaaaaaa gctataaaag gactaaaaag agaaatcaaa
     7201 gctaaatttt gcatactaag cctccacttc ttttaagctt tttaattcca aagtgccttt
     7261 tcttctatac caaagcacgc acaaagctac accaacagct acttcacaag ccgctacacc
     7321 catgataaaa agtgcaaaaa cctgtccatt taaatcattg tgcattttag aagccgctac
     7381 taaggctaaa ttagcactat ttaataaaat ttcactcgaa ataaaaagca tgatgagatt
     7441 ttgtcttttt aaaataccta caagccctat gacaaacatt aaaatagcta taaaaaaata
     7501 cttttctatc attgtttttc ctttgttagc tctttatgag taagcactat agcacacact
     7561 aaagcaatca aaagtaaaat agctataaac tcaaaagcca aaagatattt tgaaaaaatc
     7621 gctaaagcca gttgtttatt aaaatcaaac aaagcaggat cgtttaaagg caaatccgtg
     7681 ctgatatttt ggtatttaaa acctataagc atggccaaaa gtaaaatcgc acttaaaacc
     7741 accaaagtaa aaaaactttt tttagcttta agttgttctt taaattcttt agaagcatca
     7801 aaaaacatca tcgcaaaact ataaagtcca agcacagctc cactataaac aataatttgt
     7861 atcacaccta aaaactctgc atcaagtaaa aaataaaatc ccgataaaaa caccattcca
     7921 cccgctaaag ccgaaagaga ataaagcata tttttactta aaaccgcaat gccaaaaaag
     7981 cctaaaacca ctacactaaa aaatacaaag gctaaatttt ctatcatttg ttttctcctt
     8041 gctcttgtgt gttttgattt tctaaggcac tttcaagcat cgcatcgtaa taatttggcg
     8101 tttttttaac ccacaaattt gcatcctttc taagacttcc tgctccttca aattcaactt
     8161 gatttttaag cttatcaata ggagttaaaa aatcttgctt atagccaaaa taagaccttt
     8221 gctcggctgc attttcatac tctgtgccat gcactatagc aagttcagga caaacctcag
     8281 cacaaaaacc acaataaata caacgcccta aattaatact ataattttct acttttttac
     8341 gcccattttc atctaaagaa gtttccattc tgatacaatt gctaatgcaa attttttcgc
     8401 aaagcccaca acctatacat ctttcatttt cgctttctat aaaacgcatc aaacgatgaa
     8461 cagcacggta acgattgtca agctttacct tttcaaaagg atatttaatc gtagcactat
     8521 tatttctctt aagtaattct ctcatcatca caaaaagccc tacaaaaagc tctagtttaa
     8581 cgcttctacg caaagcttgt gaaattttct cccaagtgct aacaggagtt tttcttttct
     8641 catctactaa ataataattt ttcatatcaa actcctataa aagaactgtc aaagcagtga
     8701 ttaaaaggtt taaaacagct aaaggaatta agatcaaata gcacattttc atcacttgat
     8761 ctggacgcaa ttgcggaaaa gcagctcttg cccaaaaata ccaaaagaaa ataaaacttg
     8821 attttactat catcataatc caaccaggaa taatccaaaa gctattaaaa ccccctaaaa
     8881 acaaaagagt gaccaaaata gctccagcta tcatagaagt atattcacct atgaaaaaca
     8941 taccccatct taaacccgaa tactccgttc cataacccgc tacaatttca gcatcatttt
     9001 ccgtcaaaca aagcggagtt ctattagtct ctataaataa agcaattata aaaagcacaa
     9061 aagccaaagg ttgtttaaaa ataagccaag aaaaaaatcc atcgctttga taattgttaa
     9121 tatccaccaa agaaaaagaa cctacaagca ttataatagc aatcaaagct aaagctccta
     9181 cgctttcata ggaaataatc gatacaagcc ctcttgcagc ccctaaaatc gaccatttat
     9241 tattacttgc aagtccaccc aaaaacaccg cataaaagca aagtcctgaa gtgccgatga
     9301 caaaaagcaa agctacattg atatctgcca ctataggctg aatcaccctt ccaaataaag
     9361 taaattcagg tagcatagga atagctgcta aagaaacaaa agcacaaata gcagaaatca
     9421 aaggtgctat agcaaaaata aatttttgcg aatttgaagg gattatatct tctttagtaa
     9481 aaagttttat catatcagct acaagttgaa taagcccaaa aggccctacc atatcaggcc
     9541 ctatgcgtct ttgaaaataa gctaaaactt ttctttcagc ataagttgca agacctgcta
     9601 aactcgcaaa tattgcaatg acaataatac atttaatcaa agcctctaaa gcaaaaaaag
     9661 caaaatcact catggtttgc tcctaatttt tctaaattcg ccacaacaaa tctttcatca
     9721 aaaaagctta gcgtgtcaag cttttcatca aaatacggca agaaagctcc attttttata
     9781 tccttatcca cacgcacact aaggcttaat tctttatctt ttattttaag ttttacaaga
     9841 tctttatctt ttaaattttt ctctttagct aaattttcac ttacacctaa aaaaatcacc
     9901 tcattaatcg cactagcacg atttgaaaat ctaccaaatt gatagctagg attagcacta
     9961 taaagcaaaa tttcatcttc ttttgggttt aaattttcaa aatttggaga gatgaattct
    10021 tttttagcaa cttgtttaaa acattctaaa ttaagctcat atcccctttt acaatcgcct
    10081 gcattggtat aaaaattgtc taaatgatca aaatcaatcg gagaaaaacc tttatttata
    10141 gggagtctct tagtataatt tatagtatat tcctcatcaa aacctaaagc attagccaaa
    10201 tcatttaaaa aatatccctt aaattctaaa gcagcgttag ttggcaccac tcttttatcg
    10261 taatttaaaa aagttccttc ttgctgattt aaactcgcac tagctaaatt tgcatgctct
    10321 tcataagaaa aactaaaatc acctttttca ttataaccta aagtcttgcc ttcttgtgtg
    10381 tttttatcca aatcgcaaat catggccaca cctaaggtat tagtatgcgt aggatttaaa
    10441 aagactttaa aaggagtggt attttggatc aaagcaagta atttagcaag ttttttcgca
    10501 tttttatgaa aataaaaatc actccctata acaagagtaa aatttgcttt tttaagcaat
    10561 aaatcttcta atttatcttc atctatgcct aaatttttag caaaaataga gcgttgcact
    10621 tctatgattt ttttcacttt cttaggcacg acttttttta cttctttttg gatttcattg
    10681 ccttcttcat ctttttctat gacttgctct acaacttctt cgttgatact ttcttctatt
    10741 tctttatttt cactaacaaa aaactctgct aaatgagttt taataccttc atcttggcta
    10801 aatttttgaa gtaaaaaata taaaatttgc tcttcatcgc cacttttatg aatgtgtgaa
    10861 ataaaatttt tagaatattt tgctataccc atatcttcca taggatgaaa ataaagccct
    10921 gagcctttat tcatcactaa agcattattg attttatagc taagtgttgg agcatcatat
    10981 cttaaaagca ttccagccac aaccaaaaaa tcactttttg ttatatcttg agtattagca
    11041 ctataaaact cgccagaatt agcgataaat tcttgtaaaa attctttaaa tttcaaagct
    11101 tcttcattga tcaaagaaag attaaatttc ttttttaaat tttgtaaaat caaagcttct
    11161 tcattggtaa taaaactatt aaatttaatg tttttaattt catttttctc aaaaagctcc
    11221 acaagttctt taaaggcttt ttcatcttta tctgcctcat tttgcgtatc aaaagcaaat
    11281 cttgcagcct tatttaaact cgcaaaggca aaatcattac tcacacgata aattttttct
    11341 ttttgattgc taataccact ttgcttaata tcataataca tcaactcaca atcgcttgaa
    11401 tgcggatttg aagcagggat tcttttaagt tcccaaatat ttgaagtgta ttgaaatttc
    11461 gaacctatca aagctcctgt tgggcatacg cttgtacatt ctccacaaaa tgaacaatca
    11521 agcgtgtcgc catttgcagg acctatcaaa cttttttgaa atttagtcca aatcgcataa
    11581 gcatcttttc ccatgctctc tttaaagcta ttatccacac tatctccgcc acgaggaaca
    11641 gtctttaaag cactttcgcc gattttatcc ttacaaactg taatacaacg ctcacacact
    11701 atgcaaagtg cgggatcgta attaatcatt ccccaatgtt tatgcggttt atgcgtgtct
    11761 ttaatccaat gtttttgaac atttacacga cttttatgag tgaaattttg caattcacac
    11821 tcgcctgatt tatcgcaaac tccacattct aaaggatgat tgatacaata agcttgcatg
    11881 atctcatttc tttcatccca aagatttttt aaatcacttt ctacaaccat accctctttt
    11941 gctttagtat tgcaagaata taccttttta ccatcagctt caaccataca catacgacaa
    12001 gccaaagtag gactacagcc tgaaagatag caaatcgctg ggataaaaat atcatttctt
    12061 cttgctatat ttaaaatata ttcgccttct tcaaaggcgc aatttatacc attaatctta
    12121 actgtcattt tgcttccttt atgcgaattg gagtaaaatc aaaaccattg ttttcataat
    12181 ttaaaaaagc tatggtgcct tgtaaatttt catctaaaca aagcttggtt ttaaaactaa
    12241 aatctttagc caaaatttta acttcacttt gatctttgca ttttgcaatt tgtaaaaatt
    12301 gctttgaaca atgtaaattt ttatcttgca aatttgctct aaaaagcact aaaccatcat
    12361 aattatctag ttcttttaag gtgtttaatt ttgccttttt aaaatcgcat tcttcttcat
    12421 cgctatctaa aatctttaat tcatatttta cgcttaagaa attcaaaaaa tatttgatat
    12481 tttcgctatc tttataaaaa tggatatttt tatctataat taaatactta gcctctttta
    12541 aaaaagcaag cacttcacct gcttcttcct ctccaaagca agattcagca cttaaatatc
    12601 cctcatctaa atcgctaaat tgtccttcat cgcttaattt acaaagcaag gctaaaacaa
    12661 aactcaaact tgcaatttcg catttgtaaa atttagcttt taaattttta tcttccaaac
    12721 aagaaatatt aatactattt acacctattt tttcacataa atttttgttt ttaaggcttg
    12781 gcatatctaa aaaacaaaga gcattatcat aaatcatacc ctctcctttt ttataacaat
    12841 agtccaatcc acttgattaa atttcaaaga atttaaaaac tcgcaacctt gttcttttac
    12901 aaaagaaaaa cttttttcaa caggagaaaa atcgccgatt tcaaaaagca ccactaaaac
    12961 ctcaccttgt tttgcttctt ttatgatttg tgctaaatct tcaaaaagct ctttgctttt
    13021 tcttaaatct actcttctca tcgatctatc tcacctaaaa ctatatttac attacccata
    13081 atggctacaa catcagccaa ataagtacct acaagcattt cttcaaaaaa cgcacaatgc
    13141 caataactag gcgttctagc ctttaaacga taaggtcttc ctgtaccatc actatagata
    13201 aaaaagccaa gctcaccttt tggactttcg gtaggcacat aaacttcgcc tttaggaggt
    13261 tttaaacctt gagtgattaa aacaaaatgc tgcattaagg aataattctg cgttaaaatt
    13321 tgttcctttg aagcacttac atactcagga tgcgtagcta aaatttcagg tggagtatct
    13381 ttataaagcg tggcacattg cctaaggatt ttcaaacttt cacgaaattc ttgcatataa
    13441 actttatatc ttgcataaga atccccttgc gtagcataag gcacaccaaa ttcaacttca
    13501 ttataaagca aataaggctc ttctttgcgt atatcgtatt ttatgccact tcctcttaac
    13561 atcacacccg tacaacccca atttaaggct tgttctttag taaccacacc tacattttca
    13621 gttcttaaac gccaaattct attatcatct aaaagatctt cataatcttt taaatcattt
    13681 agaaatttat cgcaaaatgc aagcatttct tctaaataat tctcaggtaa atcaagcata
    13741 accccgccta ttctcataga agaatgcgta agccttgcac cgcaatactt ttctatcaaa
    13801 tccaaaacat actctcgttc tctaaaacag tataaaaata cactcatcgc accaatatca
    13861 agcgcatgag tagcaagcca aagcaaatgc gatgtgatac ggtttaattc taaaagtatc
    13921 atgcgtatca ctgcggcacg gcgtggaatc tctaaaccac aaagcttttc aaccgctgca
    13981 caataagcat aattattcgc tgaagcagcg atatagtcca ttctatcagt agtaggaata
    14041 aattcttgat aaatcatatt ttcagccatt ttttccatac cacgatgcat ataacctata
    14101 caaggacgcg cttttacaac ttgctctcca tcgagttcta aaataagacg caaatttcca
    14161 tgcgctgaag gatgttgagg gcctaagttg ataatcattt ttgagtcttc ttgctcaaaa
    14221 gctatatttt cataataagg ttttaacttg ctaggaattt gcattttaac gccttttctc
    14281 taaaattttt gcttcatcac gttttacttt ttttacaaaa gccacacctt catcttcttg
    14341 atattcttgt ttaaaggaaa tttccttctt ttgaccacct tttggcactt catggtaaag
    14401 tcttgcaaaa tttagcgtat ctttatcatc agcaaaacca gaatctcttt gttcttcgcc
    14461 cactacttca cgatattctt tgccaaaaat tttatcaatc tcataccatc ttgcaaactc
    14521 atcgcccttt aaaggataag ttttcaaaag cggatgtcca aaccaatcat caggcattaa
    14581 aatgcgtttt aaattaggat gatttatgat gaaaattcca aacatatcat aaatttctct
    14641 ctcactccaa tttgcccctt taaaaacatg agccacgctt tgcaaacgct cttttacgcc
    14701 tacaaaagtt tttattctca ctcttaattt tttttctaaa tttaaaagct gataaaacac
    14761 ttcaaaacca tttttatctg ctataaaatc aatagcactt gcttctgtaa aacttaaata
    14821 acctaaagtt ttaagcattt gcaaggtttt aacattgtct tcttttttaa tttctattac
    14881 ccaaaaatca agctctacaa aggaatttaa aatttctact tgagttttta aaacttcaaa
    14941 atcctcttta aaaacacttt cattaacatc agattttaca gtgtgtggtg cgtgataaaa
    15001 tctatctttg tagtaatttt gagtttgagc atttttttta tcgctatact ttctcatcat
    15061 atcaaccttt taggtgcgat cttgcgactt gctttttctt tgcgaatctt tttttgcaaa
    15121 atcatcaaag caaactgaaa actttcgggg cgtggagcac agcctggcac ataaatatct
    15181 acaggtataa ttctatccac tccttgaaca gtagaataag tattaaacat accgcctgta
    15241 ttggcacaac ttcccataga aatcacccat ttaggatcag gcatttgatc ataaagtctt
    15301 cttgtaaatt cagcgtgctt tttacacaaa gttcctgcga taatcatcac ttcactgtgg
    15361 cgtggtgaag ctctaaaaat cgttccaaat ctatcaaaat catatcttga acccccagcc
    15421 gccatcatct caatcgcaca acaggcaagt ccataagata aagcccataa agaattactc
    15481 ctgccccatt gaactagctt atccacactg gttaaaacta cgggcaaacc acttgcataa
    15541 tttacttgat gctctgccat gcaaacgctc cttttttata agcatataaa aatccaactc
    15601 ctaaaagtac gataaaaaca aaaacttcta aaaatccaaa ccaacctaaa tctttaaaaa
    15661 tcaaagccca aggaaataaa aacacaactt ctatatccaa aagtatgaag attaaggcga
    15721 tgatgaaaaa ttgagagtta atcttgttag cttgtttaac aggaatagga ccacattcat
    15781 aaattccaag tcctaatttt ttgcgatttt ttgcggcaaa attattaccg atttttgaag
    15841 ctaaaaaaac cagtccaaaa aaaataacac tagcaagtac cagcattaaa aaaataccaa
    15901 aataaggatg cgaagcatct atatgagaca tttattctcc ttttttaaag cactttaatc
    15961 actccacaac aaaaattaaa tttacacttt tctttatttt actctaaact tt
//
LOCUS       DAPIWJ010000036        15151 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.036, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000036 DAPIWJ010000000
VERSION     DAPIWJ010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15151)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15151)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15151
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.036"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            135..1541
                     /gene="aspA"
                     /locus_tag="RJ259_000889"
     CDS             135..1541
                     /gene="aspA"
                     /locus_tag="RJ259_000889"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HDV7366609.1"
                     /translation="MGTRKEHDFIGELEISDEVYYGVQTFRAVENFDISHDRLKDFPR
                     FVRALARVKKAAAMANHELGLLDKNIQDAIIKACDKILEGGYYDQFVVDMIQGGAGTS
                     TNMNANEVIANIGLELMGHKKGEYQYLHPNDHVNLSQSTNDAYPTALHLALHDYLSDL
                     AKAMEHLKKAYERKAEEFKDVLKMGRTQLQDAVPMTLGREFKTFAVMIGEDIQRVLEA
                     RKLILEINLGGTAIGTGINSHPDYPKVVERKIREVTGFEYTVAEDLIEATQDTGAYVQ
                     ISGVLKRVATKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSSIMPGKVNPVIPEVVN
                     QVCYFVIGADVTVTFACEGGQLQLNVFEPVVAYSLFNSVVMLEKAMYTLADKCIDGIT
                     ANEKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMNTGKRVADIALERGLLSKEQI
                     DEILTPSNMLNPHMEAKK"
     gene            1557..2894
                     /locus_tag="RJ259_000890"
     CDS             1557..2894
                     /locus_tag="RJ259_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDV7366610.1"
                     /translation="MDIMIILQVIVLLGAIFIGIRLGGIAIGYAGGLGVVILGLVLGM
                     KPGNIPWDVILIIAAAIAAISAMQQAGGLDYMVRVTEKILRSSPKFINYLAPACGWLL
                     TILAGTGNAVFSLMPVVVDVAKSQNIKPSVPLSLMVVSSQIGITASPVSAAVVYMSGV
                     LEPLGWNYPTLIGIWISTTFVACMLAAFIVSLITPMDLSKDSVYQERLKAGLVKDAGA
                     VLHGEDKPGAKLSVVIFLITVLAVVLYATAISSNIKWIDPVVVSRDAAIMSFLLTAAT
                     LITWLCKVEPGKILDTSVFKSGMTACVCVFGVAWLGNTFVAGHEASIKEVAGDWVKQT
                     PAMLAVAFFFASMLLYSQAATAKAIVPVIITALGISAANPHDSYMLVACFAAVSALFV
                     LPTYPTLLGAVQMDDTGTTRIGKFIFNHSFFIPGVLAIAIAVALGFVLAPMLI"
     gene            3002..4363
                     /locus_tag="RJ259_000891"
     CDS             3002..4363
                     /locus_tag="RJ259_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3014 family protein"
                     /protein_id="HDV7366611.1"
                     /translation="MKIKVGLIFSGIACLFLTACVNQVKQNTTFENTLTQKYCGDDFF
                     NQNLEKIKKNDDVIYTGLNAGLIARNCGDFNKSNVFFDAVEESYKYDVDLENVSPKAA
                     KFIGTTLLNDNIVDYDGSLYERIMVNIYKALNYMEEDDYENARVEFNRVLMRQDKAKE
                     YFAKEIEKNRADLDKAKEDKNYDKNMNENSKVIEAQYDNLFKEFDTTKNFINPYATYL
                     ASIFFFMDKDYRKAADLFREVAIIYPKNKTIKKEAKIFKEYVTKIKVKKAKKYVFVVY
                     ENGFGVVKDEFALTLPFIVDKKIISTNIALQTLKKREASFANLNINGQNTNDFVDLDN
                     IVATEFKINMPAMIAKALAQTIIKTTLNVAVANNDSTGGWLSLATAVATAATNKADVR
                     SWRGLPKSIAIATIENDGNLEIKDPQGNILFQKSLDKNKNALVIVRSFAPYLPASVAI
                     MEK"
     gene            4373..4741
                     /locus_tag="RJ259_000892"
     CDS             4373..4741
                     /locus_tag="RJ259_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HDV7366612.1"
                     /translation="MKKNILFILMFLLSACAPSYQINSNQNTVILGSNLPKSLVKQFQ
                     KRINSNGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVIL
                     RKLASDTRANDFRLEIKAKN"
     gene            4765..5388
                     /gene="lpoB"
                     /locus_tag="RJ259_000893"
     CDS             4765..5388
                     /gene="lpoB"
                     /locus_tag="RJ259_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HDV7366613.1"
                     /translation="MKKTKILGTALIGALLFSGCAQTAYTDGKASQVKKGDALTLGLD
                     RQDFESAAETMINSMLSDPAFANIKPGTRKVIAIGRVVNDTPQRIDTEKLTAKITSAL
                     RKSGKFVLTSAVAAGGALDSMSEDVRELRDNDEFNQKTIAKKGTLVSPDFSLAGKIRQ
                     DNVKLSNGKTQVEYFFLLRLTDLTSGLVYWEDEQTIDKTGSSKSVTW"
     gene            5471..6808
                     /locus_tag="RJ259_000894"
     CDS             5471..6808
                     /locus_tag="RJ259_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366614.1"
                     /translation="MKKILFIGSLVMASLLYAQGSQPVEITQQDINTQNEMSDASTKD
                     ITPKSIEDFFEEFADNFGIEYGITKDGKTFYTGKSTVAVNDTDPQFAQALQNAYQKAM
                     LNLQSEFIRDAFGRIATSKIQNYEADNSTNAKEFDELPKGDKVDQILNKLTQLAGAQL
                     DKALKDLGIDTNSLSEDRKKTLLKQEFLNKTMTNAIGSMSGLVPVQTIVTQRRGEYDV
                     GVIAVISNKTRQLAKDMALARQSAIKGKGKAISEYLPKDTKGFLNEYGIRLVYDENGA
                     PIILSYGNWGYVADPSNAKKTNILEDRAKETALTMADAAIIEFINTNLSLKDERTTGD
                     TYEEIIKQSINVNDSSTQEQTQNITNIIDKVNSKIKASASGKIRGIRTLKKWSYTSEN
                     GIEHVGAVRFYSYENLANTNEALNSKSNATKNEAKKSSSIQRSSNVVNSMDDF"
     gene            6818..8020
                     /locus_tag="RJ259_000895"
     CDS             6818..8020
                     /locus_tag="RJ259_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366615.1"
                     /translation="MKIIKILFLGLFLSLSLNAKVITTTSTKSSTGEGTGLTREDAIN
                     NAIIEAIGKMSGVSINSLKKSNTSVSTDNSGSNIQDNYSEQISKATKGRADTYEINSV
                     EQDANGKYTANVTIFKTTTTKKYQAPGLSADNRRSITVFDSTPDAAKRGIGSALQQKI
                     ISDLLQSRKFNVLDRDSSGYYEMEKALIKSGDAASDEVYKLKNMLATDYILLFSISGL
                     EGKQKTSNLTGKSKTEIEVIVDYRVLLFATRQIKFSNTLSMKVNLKDNSLSANETALK
                     QIANRIAGDILNAIYPLKVASVENNEVIFSQSLNQGDVYECFALGKVIKDTYTKENTG
                     RVESKTGSIEITRTSPKFSYAKITEGSVKVGDICRPLSNTGSGNGYTIGRDANYQTQE
                     GGGVNLGF"
     gene            8179..8487
                     /gene="rplU"
                     /locus_tag="RJ259_000896"
     CDS             8179..8487
                     /gene="rplU"
                     /locus_tag="RJ259_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HDV7366616.1"
                     /translation="MYAIIKHSGKQYKVSVGDELKLDHFEAESKASIEVSEVLAINDK
                     ELKVGAPFVAGAKVVLEVINHGKDKKVVIYKKRRRKDSKLKRGFRRQFTRVVVKDIKA
                     "
     gene            8498..8752
                     /gene="rpmA"
                     /locus_tag="RJ259_000897"
     CDS             8498..8752
                     /gene="rpmA"
                     /locus_tag="RJ259_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HDV7366617.1"
                     /translation="MAHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTA
                     THAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYPA"
     gene            8859..9911
                     /gene="obgE"
                     /locus_tag="RJ259_000898"
     CDS             8859..9911
                     /gene="obgE"
                     /locus_tag="RJ259_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HDV7366618.1"
                     /translation="MFIDSVKITLASGDGGKGAVSFRREKHVPLGGPDGGDGGNGGDI
                     IFVCDNNTHTLVNFKGKRELRAQNGAGGMGRNKNGKKGENLELIVPEGTQVIDAQTNE
                     ILLDLTKEGQRELFLKGGKGGLGNTHFKHATNQRPDYAQPGIKGESRLVRLELKLIAD
                     VGLVGFPNVGKSTLISVVSNAKPEIANYEFTTLTPKLGLVDVNEYNSFVMADIPGIIE
                     GASGGKGLGLAFLKHIERTSFLLFVLDPMRQMPLKEQFIVLRKELEKFSNELFGRKFG
                     IMISKSDSVRLGEEFAEQIALNINELDNYLKEINNPQSFLIKVSSLEKTGLKELKFML
                     LEEIKTLRNNKKNLTI"
     gene            10016..10771
                     /gene="proB"
                     /locus_tag="RJ259_000899"
     CDS             10016..10771
                     /gene="proB"
                     /locus_tag="RJ259_000899"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HDV7366619.1"
                     /translation="MKRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVT
                     SAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFD
                     SRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVI
                     LSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLL
                     EHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE"
     gene            10849..11766
                     /locus_tag="RJ259_000900"
     CDS             10849..11766
                     /locus_tag="RJ259_000900"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HDV7366620.1"
                     /translation="MKKIIFMGTPSYATCILKALVENENFKLVALFTQPDKAVGRKQI
                     LTPSDTKAFLSQNYPSIPIFTPSSLKDKNIIREIKDLNPDFIVVAAYGKILPKVILDL
                     APCVNLHASLLPKYRGASPIQSAILNKDEKSGVCTMLMEEGLDTGAILESLECDIKDK
                     NSSEVFELLANLAAKLILSTLLNFDKITPKKQEESLATLCRKIKKEDGLINLQNAREL
                     YQKYLAFTPWPGVFLENGLKFLELELVDELKQNAKMGEILELEKESFLLACKQGVLRI
                     KKLQESGKKALDGRTYLNGKRLKSEDSLC"
     gene            11729..12382
                     /locus_tag="RJ259_000901"
     CDS             11729..12382
                     /locus_tag="RJ259_000901"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HDV7366621.1"
                     /translation="MEKGLKVKIVCVESIDSTHLFLCEQIRNGKIDENFAIYALEQTN
                     GVGSRENSWQSSKGNLHLSFCIKEEDLPKDLPLASVSIYFAYLLKEVLQEKGSKIWLK
                     WPNDLYLDDKKAGGVISAKISNFIIGGMGLNLKFAPQNTALCDIEISLKDLVSEFLQK
                     VEKKILWKNIFSKYMLEFEKSRKFSVHHEGKVFSLENSFLYEDGSILLGDKRVYSLR"
     gene            12379..13164
                     /locus_tag="RJ259_000902"
     CDS             12379..13164
                     /locus_tag="RJ259_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HDV7366622.1"
                     /translation="MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQAN
                     ATTGLGFNRNNYEYNIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGE
                     NNEKKMLLKNQIQEVIDEYDFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGV
                     AMVLNTIKIIKKTINSKLRVRGFLPTMYSSQNNLSKDVVDDLKQNFKKQLFTINGNED
                     DFIVIPRNVKLAESPSFGKPIILYDIKSPGSVAYQNLAYSILG"
     gene            13170..14006
                     /locus_tag="RJ259_000903"
     CDS             13170..14006
                     /locus_tag="RJ259_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HDV7366623.1"
                     /translation="MGLNKDRGLSSLISDMDTVYSKELGFDKNQSTMIEIDQISPNPF
                     QPRKNFDQEALDELANSIKEFGLIQPIIVFKKNNKFILIAGERRLRAVKALGKKEILA
                     FIADIDENKLRELALIENIQRENLNPIELANSYKDLMQVHKITQENLAELIHKSRTQI
                     TNTLRLLNLDIRTQELIASGKISQGHAKVLVGLDQKDEKMLVDSIIGQKLNVRDTEKI
                     VKKIKNNESLPNQEFEDEIKKLKQILNRFGFDCKNKNNDFVIHLENIDKIKKLIKMLE
                     KF"
     gene            14067..14492
                     /locus_tag="RJ259_000904"
     CDS             14067..14492
                     /locus_tag="RJ259_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B'"
                     /protein_id="HDV7366624.1"
                     /translation="MFEDMHPSIMLATIAIFLAMIVILNSMLYKPLLKFMDERNDSIK
                     NDENKVKENSQEVLCVNDELEVIHINTREEIQKIKQSAIAAAKEEAEQILRSKKEELE
                     RKMASFYADLAIQKKELQEHLNIHLPELKQALQNNIKKI"
     gene            14503..15015
                     /locus_tag="RJ259_000905"
     CDS             14503..15015
                     /locus_tag="RJ259_000905"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HDV7366625.1"
                     /translation="MSKLLFIIFLLPLYAFGASNGSGEYDIIPRTINFLIFVGILYYF
                     VATPFKNFYKNRIVKISSKLDEIQKKLLESKAKKLDTMKKLEEAKASAAAALITAKKE
                     AEILVQNIKKETQDELDLLQKHFEEQKDYEFRKMEKELVSNTLNEIFSDPNMTLKQSE
                     IIELMMKKVS"
     gene            15018..>15151
                     /locus_tag="RJ259_000906"
     CDS             15018..>15151
                     /locus_tag="RJ259_000906"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Produces ATP from ADP in the presence of a proton
                     gradient across the membrane. The delta subunit is part of
                     the catalytic core of the ATP synthase complex; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP F0F1 synthase subunit delta"
                     /protein_id="HDV7366626.1"
                     /translation="MENIIARRYAKAIASRADINDFYQNLCILNSAFVLPKFKNIIES
                     "
BASE COUNT         5624 a         1955 c         2756 g         4816 t
ORIGIN      
        1 aatacttaat ttatcgtatt tgaaagcagt ttacttatta atcaattatt aactaaaaat
       61 gcgatatcat tattttatga tttaaatcaa aaatttttga tttaaaatta aaatactttt
      121 atgaaaggtt caaaatggga acaagaaaag aacatgattt tattggggaa ttggaaatct
      181 ctgatgaggt ttattatgga gtgcaaactt ttagagctgt tgaaaatttt gatatttctc
      241 atgatagatt aaaagatttt cctcgctttg ttagggcttt ggctagagta aaaaaagctg
      301 cagctatggc aaatcatgaa ttaggtcttt tggataaaaa tatccaagat gcgattatta
      361 aagcgtgtga taaaatttta gaaggtgggt attatgatca atttgtagta gatatgatcc
      421 aaggaggtgc tggaacaagt acaaatatga atgctaatga agttatagca aacataggac
      481 ttgaacttat gggtcataaa aaaggtgaat accaatatct tcatccaaat gatcatgtta
      541 atttaagcca aagtactaat gatgcttatc ctacagcttt acaccttgcc ttgcatgatt
      601 atttaagtga tttggcaaaa gctatggaac atctaaaaaa agcttatgag agaaaagctg
      661 aagaatttaa agatgttctt aaaatgggta gaacccaact gcaagatgct gtacctatga
      721 ctttaggtcg tgaatttaaa acttttgccg taatgatagg tgaagatata caaagagtat
      781 tagaagctag aaaattgatt ttagagatca atttgggtgg aactgctatt ggaacaggaa
      841 ttaattctca tcctgattat ccgaaggttg tagaaagaaa aataagagaa gtgacaggtt
      901 ttgaatatac tgtggctgag gatttaatcg aggcgactca agatacggga gcttatgtac
      961 aaatttcagg tgttttaaaa cgtgttgcaa caaaactttc taaagtatgt aatgacttaa
     1021 gacttttaag tagtggtcca aaatgtggtc ttaatgagat taatcttcca aaaatgcaac
     1081 caggtagttc tatcatgcca ggtaaggtaa atcctgttat tcctgaagta gttaatcaag
     1141 tttgttattt tgttattgga gcagacgtaa ctgtaacttt tgcttgtgag ggtggacaat
     1201 tacaacttaa tgtttttgaa ccagttgtag catatagctt atttaattct gttgtaatgc
     1261 tagaaaaagc aatgtatact ttagctgata aatgtataga tggtattacc gcaaatgaaa
     1321 aaatttgttc agactttgtc tataattcag taggtatagt aacagcttta aatccttata
     1381 ttggttatga aaattcagct tctatagcca aagaggcaat gaacactgga aaaagagtgg
     1441 ctgatattgc gcttgaaaga gggcttttaa gcaaagaaca aattgatgaa attttaactc
     1501 catcaaatat gctaaatcct cacatggaag ctaaaaaata gcacttagga tttaatatgg
     1561 atataatgat aattttgcaa gtaatcgtcc ttcttggggc gatttttatc ggtattcgcc
     1621 taggtggtat tgctataggt tatgctggag gattaggtgt agttatatta gggcttgttt
     1681 taggtatgaa acctggtaat attccttggg atgttatttt aattattgcc gcagctattg
     1741 cagcaatttc tgctatgcaa caagcaggtg gacttgatta catggtaagg gtgacagaaa
     1801 aaattttaag atcaagtcct aaatttataa attatttagc tccagcttgt gggtggttgc
     1861 ttacaatttt agcaggaaca ggaaatgcgg tattttcttt aatgcctgtt gtagttgatg
     1921 ttgcaaaatc tcaaaacata aaacctagtg ttccactttc attaatggtt gtttcttcgc
     1981 aaattggaat cactgcttct cctgtaagtg cagctgtggt ttatatgagc ggagttttag
     2041 agccacttgg atggaattat ccaactttaa ttggaatttg gattagcaca acttttgtag
     2101 cttgtatgct tgcagctttt atagtgagtt taatcactcc tatggatttg agtaaggata
     2161 gtgtttatca agaacgatta aaagcaggac ttgtaaagga tgcaggagct gttttgcatg
     2221 gcgaagataa accaggtgct aaactttcag tggtaatttt cttgatcact gttttggcag
     2281 ttgtacttta tgcaaccgca atttcaagta atattaaatg gattgatcct gttgtggttt
     2341 caagagatgc agctattatg agctttttac ttactgcagc aactttgatc acttggcttt
     2401 gtaaagttga accaggtaaa attcttgaca ctagtgtatt taaaagcggt atgactgctt
     2461 gtgtttgtgt ttttggtgta gcatggcttg gaaatacttt tgttgcagga cacgaagctt
     2521 ctatcaaaga agtagcaggc gactgggtta aacaaacccc tgctatgtta gcagttgcat
     2581 ttttctttgc aagtatgctt ttatattctc aagcagcaac cgcaaaggcc attgtacctg
     2641 taattatcac tgctttagga atttcagcag caaatccgca tgattcttat atgcttgtag
     2701 cttgttttgc agcagtttca gcactttttg tacttccaac ttatccgact ttgttaggtg
     2761 cagtgcaaat ggatgataca ggaacgacta gaattggtaa atttatattt aatcactcat
     2821 tctttatacc aggggtttta gctattgcaa ttgctgtagc attaggcttt gtattagctc
     2881 ctatgcttat ttaaatcaaa ccctaggttt ttctctccta gggttaaaat tttttcatta
     2941 gtttttaagt atatactacg ctataatatt catttttaat tttctttaag aaaggaattt
     3001 aatgaagata aaagttgggt tgattttttc aggtattgct tgcctttttt taacagcttg
     3061 tgttaatcag gttaaacaaa atacaacatt tgaaaatact ttaacacaaa aatattgtgg
     3121 tgatgatttt ttcaatcaaa atttagaaaa aattaaaaaa aatgatgatg tcatttatac
     3181 aggattaaat gcaggtttga ttgctagaaa ttgtggtgat tttaataaaa gtaatgtatt
     3241 ttttgatgct gtagaagaat cttataaata tgatgtggat ttagaaaatg taagccctaa
     3301 agcagctaaa tttattggta caaccttgct taatgataat atagtagatt atgatggttc
     3361 tttatatgaa agaattatgg ttaatatata taaagctcta aactatatgg aagaagatga
     3421 ttatgaaaat gcaagagttg agtttaatcg tgttttaatg cgtcaagata aggcaaaaga
     3481 atattttgct aaagaaattg aaaaaaatcg tgctgattta gataaggcaa aagaagataa
     3541 aaattatgat aaaaatatga atgaaaattc aaaagttata gaagcgcaat atgacaattt
     3601 atttaaagaa tttgatacaa caaaaaattt cataaatcct tatgcgactt atcttgcttc
     3661 aatatttttc tttatggata aagattatag aaaagctgca gatttattta gagaagtagc
     3721 tattatttat ccaaaaaaca aaactatcaa aaaagaggct aaaattttta aagaatatgt
     3781 cacaaaaata aaagtcaaaa aagctaaaaa atatgttttt gtagtttatg aaaatggatt
     3841 tggtgtagtt aaggatgaat ttgctttaac cttacctttt atagtggata aaaaaattat
     3901 tagcacaaat attgctttgc aaaccttgaa aaaaagggaa gcttcttttg caaatttaaa
     3961 tataaatggt caaaatacaa atgattttgt agatttagac aatattgtcg ctactgaatt
     4021 taaaataaat atgcctgcaa tgattgctaa agccttagct caaactataa ttaaaaccac
     4081 tttaaatgta gctgttgcaa ataatgactc tacaggtgga tggctaagtc ttgcaacagc
     4141 agtagcaact gctgcaacca ataaagctga tgtgcgttct tggagaggtt taccaaaaag
     4201 tattgccata gcaacaatag aaaacgacgg aaatttagaa atcaaagatc cacaaggcaa
     4261 tattttgttt caaaaatcat tggataaaaa taaaaatgct cttgtgatag tgcgttcttt
     4321 tgctccgtat ttacccgcaa gtgttgctat catggaaaaa taaggctaaa agatgaaaaa
     4381 aaatatttta tttattttaa tgtttttact tagtgcttgt gcaccaagtt atcaaataaa
     4441 ttcaaatcaa aatactgtaa ttttaggttc aaatttacca aaaagtttag taaaacaatt
     4501 tcaaaagcgt ataaatagca atggttattt agaatttgaa gtgattttgc gcagtacttt
     4561 tgctaaagat gtaatttata aagtagattg gttagataaa gatggttttg tgctaagaga
     4621 tgttttaaat gaggactatc aagcccttag aattccagca ggacaagagg taattcttcg
     4681 taaacttgca tctgatacaa gagcgaatga ttttagatta gaaattaaag caaaaaatta
     4741 atctcatttt aggaaggata aatcatgaaa aaaacaaaaa ttttaggaac agctcttatt
     4801 ggagctttgc tttttagtgg ttgtgcgcaa acagcttata cagatggaaa ggcaagtcag
     4861 gtaaaaaaag gcgatgcttt aactttgggt cttgatagac aagattttga aagtgcagct
     4921 gaaactatga taaatagtat gttaagcgat cctgcttttg caaatattaa accaggtaca
     4981 agaaaggtta ttgctattgg tagggttgtg aatgataccc cgcaaagaat cgatactgaa
     5041 aaactcaccg caaaaatcac ttctgcatta agaaaatcag gtaaatttgt tctaacttca
     5101 gcagttgctg caggcggagc acttgatagc atgagtgaag atgtaagaga attaagagat
     5161 aatgatgagt ttaatcaaaa aaccatagca aaaaaaggga cattggtatc gcctgatttt
     5221 tctcttgcgg gtaaaattag acaagataat gtaaaactta gcaatggtaa aactcaagta
     5281 gaatactttt tcttactaag acttactgat ttaacatcag gtttagttta ttgggaagat
     5341 gaacaaacta ttgataaaac cggttctagt aaatcagtta cttggtaaaa taaaaattaa
     5401 tttatgaata aaatttttta gctcaagtgt ttagcttggg ctttttttat gatttttaaa
     5461 aggatacgaa atgaaaaaaa tattatttat cggctcttta gttatggcaa gtttacttta
     5521 tgcacaaggt tcccagcctg tagaaattac acaacaagat ataaatactc aaaatgaaat
     5581 gtctgacgca agtactaagg atattacccc aaaatcaatt gaagattttt ttgaagaatt
     5641 tgcggataat ttcggtatag aatatggtat aaccaaagat ggaaaaactt tttatacagg
     5701 aaaaagtact gttgctgtaa atgatactga tccacaattt gcacaagctt tacaaaatgc
     5761 ttaccaaaaa gcaatgttaa atttgcaaag cgaatttata agagatgctt ttggaagaat
     5821 tgctacaagc aagattcaaa attatgaagc agataattct acgaatgcta aggaatttga
     5881 tgaattgcca aaaggtgata aggttgatca aattttaaat aaacttacac aattagctgg
     5941 tgctcagctt gataaggcat taaaagattt aggtatagat acaaattctt taagcgaaga
     6001 cagaaaaaag actttattaa agcaagaatt tcttaataaa actatgacaa atgccatagg
     6061 ttctatgagt ggacttgttc ctgtgcaaac tatagttaca caaagaagag gtgagtatga
     6121 tgtaggtgtt attgctgtta tttccaataa aactcgccaa ttagcaaaag atatggcact
     6181 agcaagacag agtgctatta agggtaaagg caaggcaata agtgagtatc tgccaaaaga
     6241 tacaaaaggc tttttaaatg aatatggaat tcgcttagtt tatgatgaaa atggtgcacc
     6301 tattatttta agttatggaa actggggtta tgtagcagat cctagcaatg ctaaaaaaac
     6361 aaatatttta gaagatagag ccaaagaaac agcacttact atggctgatg ctgctattat
     6421 agagtttatt aatacaaatt taagtcttaa agatgaaaga acaactggtg atacttacga
     6481 ggaaatcatc aaacaaagta ttaatgttaa tgatagttcc actcaagaac aaactcaaaa
     6541 cataacaaat attattgaca aagtaaatag taaaataaaa gcaagcgcaa gcggtaaaat
     6601 tcgtggtatt cgtactctta aaaaatggag ctatacaagt gaaaatggta ttgaacatgt
     6661 aggagctgtg agattttatt cttatgaaaa tttagctaac acaaatgagg ctttaaattc
     6721 aaagtcaaat gcaacaaaaa atgaagctaa aaaatcttct agcatacaaa gaagttctaa
     6781 tgttgtaaat agcatggatg atttttaaag gtaaaagatg aaaataatta aaattctttt
     6841 tttaggctta tttttaagcc taagtcttaa tgctaaagtt ataaccacaa cttcaacaaa
     6901 atcaagcaca ggtgaaggca caggcttgac tagggaagat gcgataaaca atgccattat
     6961 agaagctata ggaaaaatga gtggagtaag catcaattct cttaagaaat ctaacactag
     7021 cgtttcaact gataattcag gttcaaatat acaagataat tacagcgagc aaatttcaaa
     7081 agccaccaaa ggtagagctg atacttatga aatcaatagt gttgaacaag atgcaaatgg
     7141 taaatataca gccaatgtaa cgatttttaa aaccacaaca acaaaaaagt atcaagctcc
     7201 aggtttaagt gcagataata gaagaagtat tactgttttt gattctactc cagatgctgc
     7261 aaaaagaggt ataggctcag ctttgcaaca aaaaatcatt tctgatttat tgcaaagtcg
     7321 taaatttaat gttttagacc gtgattctag tggctattat gaaatggaaa aagctttaat
     7381 caaaagtggc gacgcagcta gcgatgaagt ttataaactt aaaaatatgt tagcaacaga
     7441 ttatatttta ttgttttcta tttcaggact tgaaggtaaa caaaaaacaa gcaatttaac
     7501 aggaaaaagc aaaactgaaa ttgaagttat cgtagattat cgtgtgcttt tatttgctac
     7561 aagacaaatt aaattttcta atactttaag catgaaagtc aatcttaaag acaatagtct
     7621 tagtgccaat gaaaccgcac tcaaacaaat tgcaaatcgt atagcaggag atattttaaa
     7681 cgcaatttat cctttgaaag ttgcaagtgt tgaaaacaat gaagtaatat tttctcaaag
     7741 cttaaatcaa ggtgatgttt atgaatgttt tgctcttggg aaggttataa aagatactta
     7801 tacaaaagaa aatacaggaa gagtagaaag caaaacagga agtattgaaa tcactcgcac
     7861 aagccctaaa ttttcttatg caaaaatcac agaaggtagt gtaaaagtgg gcgatatttg
     7921 cagaccttta agtaatactg gtagtggaaa tggctacact ataggtcgtg atgcaaatta
     7981 tcaaacccaa gaaggcggcg gagtaaatct aggcttttaa atttttagag tttgattttt
     8041 ctcaaactct aaactctttc ttaaattcat caaaaattaa agaaaaattt tgtaaaatcg
     8101 aaattttatt aaaccactaa agcttttaaa tccgttatta cggtgcttta tggtactacc
     8161 aatttataag gaaaagcaat gtatgctatt atcaaacaca gcggaaagca atacaaagta
     8221 agtgttggcg atgagctaaa actagatcac tttgaagctg aaagcaaagc aagtattgaa
     8281 gtaagcgaag ttcttgctat caatgataaa gaattaaagg taggtgcgcc tttcgtagca
     8341 ggtgcaaaag ttgttttgga agtgatcaat cacggaaaag ataaaaaagt tgtgatttac
     8401 aaaaaaagac gcagaaaaga ttctaaactc aaacgcggtt ttagaagaca atttactcgc
     8461 gttgtagtaa aagatatcaa agcttaagga gtaaagaatg gcacacaaga aaggtcaagg
     8521 ttcaactcaa aataaccgcg attccatagg tcgtcgttta ggtgttaaaa aatttggtgg
     8581 cgagtttgtt agagctggaa atatcatcat ccgccaaaga ggaactgcaa ctcatgcagg
     8641 taacaatgta ggcatgggaa aagatcatac tatctttgct ctaattgatg gttttgtaaa
     8701 attcgaaaga aaagacaaag atagaaaaaa agtttctgta tatcctgcat aagtttttag
     8761 gacgcttttt agcgtcttga aaactttaaa tttataaatt taacttcttt tatttactca
     8821 aatttagctt tataaattta aagtcaaagg caatttaaat gtttattgat agtgttaaaa
     8881 ttactttagc ttcaggcgat ggtggcaaag gtgctgtaag ttttcgccgt gaaaaacatg
     8941 ttccacttgg tggccctgat ggaggagatg gtggaaatgg tggtgatatt attttcgtat
     9001 gtgataataa tacccacact cttgtaaatt tcaaaggcaa aagagaatta cgcgcgcaaa
     9061 atggtgctgg tggaatggga cgcaataaaa atggcaaaaa gggtgaaaat ttagaactta
     9121 tagtgcccga aggaacgcaa gttatcgatg cacaaaccaa tgaaatttta cttgatctta
     9181 ccaaagaagg acaaagagag ctttttttaa aaggtggaaa aggtggactt ggcaacaccc
     9241 attttaaaca cgccaccaat caacgccccg attacgcaca acctggtata aaaggagaaa
     9301 gtcgcttagt cagacttgaa cttaaactta ttgccgatgt agggcttgtg ggctttccaa
     9361 atgtgggaaa atctactctt ataagcgttg tttcaaatgc aaaacctgaa attgcaaatt
     9421 atgaatttac cacccttact ccaaaacttg gacttgtaga tgtaaatgag tataattcct
     9481 ttgttatggc tgatattcca gggattatcg aaggagcaag tgggggtaaa ggcttaggac
     9541 ttgccttttt aaagcacata gaaagaacga gctttttact tttcgtgcta gatcctatga
     9601 ggcaaatgcc tttaaaagaa caatttatag tactaagaaa agaacttgaa aaattttcca
     9661 atgaactttt tgggcgtaaa tttggcatca tgatttcaaa aagtgatagt gttcgtttag
     9721 gagaggaatt tgctgagcaa attgctttaa acattaatga gttagacaat tatctcaaag
     9781 aaataaataa tccacaaagc tttttaatca aagtctcaag ccttgaaaaa acaggactta
     9841 aagaacttaa attcatgctt ttagaagaaa ttaaaacttt aagaaataac aaaaaaaatt
     9901 taacaatcta ggaagtgttt tatattaaaa atttcaaaca ctccctattt tttcaaaaat
     9961 aactagttta tatgaaattt tggctaaaat tataaaaatt tttcaaggaa taagcatgaa
    10021 aagaatagtt gttaaagtgg gttctcatgt gattagcgaa gaaaacactt taagttttga
    10081 gcgtcttaaa aatttagtcg catttttagc taaactcatg gaaaaatatg aagtaatttt
    10141 agtaacctcg gcggctattt cggcaggaca caccaaacta gatatcgata gaaaaaacct
    10201 tattaataaa caagttttag ctgctattgg acaacctttt ttaattagtg tttataacga
    10261 gcttttagcc aaatttaaca aactaggcgg acaaatttta cttacaggca aggattttga
    10321 ctctagaaaa gctaccaaac acgcaaaaaa tgctatcgat atgatgataa atttaggaat
    10381 tttgcctatt atcaatgaaa atgacgctac agctatagaa gaaattgtct ttggtgataa
    10441 tgatagttta agtgcttatg ctacgcattt ttttgatgcg gatttgcttg tgattttaag
    10501 cgatattgat ggattttacg ataaaaatcc tagtgaattt agtgatgcaa agcgtttaga
    10561 aaaaatcact catattaaag aagaatggct acaagcaacc ataaaaacag gtagtgagca
    10621 cggaacaggt ggtatagtaa ccaaacttaa ggcagctaaa tttttacttg aacacaataa
    10681 aaaaatgttt ttagcaagtg gctttgattt aagtgtggca aagacatttt tattagaaga
    10741 taaacaaata ggtggaactt tgtttgagtg attaatttat taaattctct tttaaaatca
    10801 aataagctat aattaaaact tttaatttca cacaaacaaa gcgaaaaaat gaaaaaaatt
    10861 atttttatgg gcactccatc ttacgcaact tgtattttaa aagcactagt agaaaatgaa
    10921 aattttaaac tcgtagcact ttttactcag cctgataaag ccgtaggtag aaagcaaatt
    10981 ttaactccaa gtgatactaa ggctttttta agtcaaaatt atcctagtat tcctattttt
    11041 actccaagtt ctttaaaaga taaaaatatt ataagagaga ttaaggattt aaatcctgat
    11101 tttatcgtgg ttgctgccta tggaaaaatt ttacctaaag tcattttgga tttagcgcct
    11161 tgtgtgaatt tgcacgcttc tttacttcca aaataccgtg gtgccagtcc gatccaaagt
    11221 gcaattttaa ataaagatga aaaaagtgga gtttgcacca tgctcatgga agaagggctt
    11281 gacacaggtg ctatacttga aagcttagaa tgtgatataa aagataaaaa ttcaagtgaa
    11341 gtttttgaac ttttagcaaa tttggccgct aagctgatcc tctctactct tttaaatttt
    11401 gataaaatca cccctaaaaa acaagaggaa agtctagcaa cgctttgtag aaaaatcaaa
    11461 aaagaagatg ggcttataaa tttgcaaaat gcaagagaac tttatcaaaa atatctagct
    11521 ttcacccctt ggcctggagt tttcttggaa aatggactta aattcttaga acttgaactt
    11581 gtggatgaat taaaacaaaa tgctaagatg ggtgaaattt tagaattaga aaaagaaagt
    11641 tttttgcttg cttgcaaaca aggagttttg cgtattaaaa aacttcaaga aagtggaaaa
    11701 aaagctcttg atggcaggac ttatttaaat ggaaaaaggc ttaaaagtga agatagtttg
    11761 tgttgaaagt atagactcaa ctcatctttt tttatgcgag caaatacgca atggaaagat
    11821 tgatgaaaat tttgctattt atgctttaga acaaacaaat ggagttggaa gtagggaaaa
    11881 ttcttggcaa agctctaaag gaaatttaca tctttctttt tgtattaaag aagaagattt
    11941 accaaaagat ttacctttag cttctgtgag tatttatttt gcttatttac ttaaagaagt
    12001 tttacaagaa aaaggttcta aaatttggct taaatggcct aacgatctat atttagatga
    12061 taaaaaagct ggaggagtta taagtgctaa aatttcaaat tttatcatag gcggtatggg
    12121 tttaaatctt aaatttgcac cccaaaatac agctttatgc gatatagaaa tttcgcttaa
    12181 agatttagtg agtgagtttt tgcaaaaagt agaaaaaaaa attttatgga agaatatttt
    12241 tagcaagtat atgttagaat ttgaaaaatc aagaaaattt agcgtccatc atgaaggtaa
    12301 agttttttca cttgaaaatt cttttttgta cgaagatggt tcaattttac taggcgataa
    12361 aagggtgtat agtttaagat gagcgaaatt attacaatag caaatcaaaa aggtggagta
    12421 ggaaagacta caacagcagt aaatttagcc gcttctttgg ctgtggctga aaaaaaagta
    12481 cttttgattg atgttgatcc acaagctaat gcgactacag ggcttggttt taatcgtaat
    12541 aattatgagt ataatattta ccatgttttt ataggaagaa aaaagctttc agatattatt
    12601 ttaaaaacag aattgccaca acttcattta gctccttcaa atataggtct tgtaggtata
    12661 gaacaagagc ttgctaaagg tgaaaataat gagaaaaaaa tgttacttaa aaatcaaatt
    12721 caagaagtaa ttgatgagta tgattttatt attattgatt ctccacctgc tcttggaagt
    12781 attactataa atgcttttgc agcaagtgat agcgtaatta tccctataca gtgtgaattt
    12841 tatgcgcttg agggtgtagc tatggtttta aatacaatta aaattatcaa aaaaactatt
    12901 aattctaaac tcagggttcg tggattttta ccgacaatgt atagctctca aaataatctt
    12961 tctaaagatg ttgtagatga tttgaaacaa aattttaaaa aacaactttt tactattaat
    13021 ggaaacgaag atgactttat tgtgatccct cgcaatgtaa aacttgcaga aagtccaagt
    13081 tttggaaagc ctataattct ttatgatatt aaatcgccag gttctgttgc ttatcaaaat
    13141 ttggcgtatt ctatattagg ataattataa tggggttaaa taaagatagg ggtttaagta
    13201 gtttaatcag tgatatggat actgtttata gcaaagaatt gggttttgat aaaaatcaaa
    13261 gcactatgat agaaattgat caaatttcac ccaatccatt tcagccaaga aagaattttg
    13321 atcaagaagc tttagatgag cttgctaatt ctatcaaaga atttggactt attcagccta
    13381 ttattgtatt taaaaaaaat aataaattta ttttaattgc tggggaacgt cgcttaagag
    13441 cagtgaaagc attaggaaaa aaagaaattc tagcttttat tgctgatatt gatgagaata
    13501 aacttagaga attggctctt attgaaaata tacaaagaga gaatttaaac cctattgagc
    13561 ttgctaattc ttataaggat ttgatgcaag ttcataagat tactcaagag aatttagcag
    13621 aacttattca taagtctcgt actcaaataa caaatacttt aagacttctg aatttagata
    13681 ttagaactca agagttgatt gcttctggaa aaatttctca gggtcatgct aaagttttgg
    13741 ttggtttaga tcaaaaagat gaaaaaatgt tggttgatag cataataggt caaaaactta
    13801 atgttagaga tactgaaaaa atagttaaaa aaataaaaaa taatgaaagc ttacctaatc
    13861 aagaatttga agatgaaata aaaaaattaa aacaaatact aaatcgcttt ggatttgact
    13921 gcaaaaataa aaataatgat tttgtaattc atttagaaaa tattgataaa attaaaaaat
    13981 taatcaaaat gcttgaaaag ttttaaccaa aatcttagct tttttatggt aaaatagtcc
    14041 ttcaaaaatt ctaaccaagg agaattatgt ttgaagatat gcatccttcc ataatgcttg
    14101 ctactatagc tatttttttg gctatgatag ttattttaaa tagtatgctg tataagccgc
    14161 ttttaaaatt tatggatgaa agaaatgatt ctataaaaaa tgatgagaat aaagtaaaag
    14221 aaaattctca agaagtttta tgtgtgaatg atgaattaga agttattcat attaacacta
    14281 gagaagaaat tcaaaaaatc aaacaaagtg ctatagctgc tgctaaagaa gaggcagagc
    14341 aaattcttag aagcaagaaa gaagaattag aaagaaaaat ggccagcttt tatgcagatt
    14401 tagctattca aaaaaaagag ttacaagaac atttaaacat acatttacct gagcttaagc
    14461 aagctttgca aaataacata aagaaaattt aagaggagag aaatgagtaa gttattattt
    14521 attatatttt tgctaccttt gtatgctttt ggtgcatcaa acggtagtgg agaatatgat
    14581 attattccaa ggactattaa ttttctaatt tttgtgggta tattgtatta ttttgttgca
    14641 actccattta aaaattttta caaaaaccgt attgtaaaaa tttcttctaa acttgatgaa
    14701 attcaaaaaa aacttttaga aagtaaagct aagaaattag atacgatgaa aaaacttgaa
    14761 gaagctaagg caagtgctgc tgccgcttta attacagcaa aaaaagaagc tgaaatttta
    14821 gttcaaaata ttaagaaaga gactcaagat gagttagatt tacttcaaaa acattttgag
    14881 gaacaaaaag attatgaatt tagaaaaatg gaaaaagaat tagtatcaaa tactttaaat
    14941 gaaatttttt ctgatccaaa tatgacatta aaacagagtg aaataataga acttatgatg
    15001 aagaaggtat cttaaatatg gaaaatataa ttgcaagaag atatgcaaaa gcgatagctt
    15061 caagagctga tataaatgat ttttatcaga atttgtgtat tttaaattct gcttttgttt
    15121 tgccaaaatt taaaaatatt atagaatcta a
//
LOCUS       DAPIWJ010000037        14551 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.037, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000037 DAPIWJ010000000
VERSION     DAPIWJ010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14551)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14551)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14551
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.037"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..846
                     /locus_tag="RJ259_000907"
     CDS             <1..846
                     /locus_tag="RJ259_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HDV7366627.1"
                     /translation="MKKYLIPDELKKHGLKSNELSIDDETIELIISDYTRESGVRNLR
                     RKVAELCRKSAKKLLLENIKKVIINTKNLNEFLDKKVFEIEKNNGENQVGQVNGLAWT
                     SVGGDVLKVEAVKIKGKGELTLTGSLGDVMKESARIAFSMIKVLIDEGKIKIPKKIII
                     DPKVNVYDSYNIHIHVPDGATPKDGPSAGITISTAIASIFSDKKVKADVAMTGEIDLK
                     GKVLPIGGLKEKLIAAYKADIKTALIPRKNYERDLKDIPSEVRDNMEIIAVDTFSDVL
                     EYTLV"
     gene            complement(907..1167)
                     /gene="rpsR"
                     /locus_tag="RJ259_000908"
     CDS             complement(907..1167)
                     /gene="rpsR"
                     /locus_tag="RJ259_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HDV7366628.1"
                     /translation="MAEKRKYSRKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRR
                     LTGTSKKYQEMVEVAIKRARHVALIPYIVDRKEVINNPFEGL"
     gene            complement(1178..1729)
                     /locus_tag="RJ259_000909"
     CDS             complement(1178..1729)
                     /locus_tag="RJ259_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDV7366629.1"
                     /translation="MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKR
                     EETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENME
                     MLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSP
                     QHEEKLKEIDIDAYDSDDTNLPF"
     gene            complement(1738..2115)
                     /locus_tag="RJ259_000910"
     CDS             complement(1738..2115)
                     /locus_tag="RJ259_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HDV7366630.1"
                     /translation="MKHYEVLFILKPTLTEEEVNTKLEFVKEVLTKNSAEIETVVPMG
                     TRKLAYKIKKYERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKKEIAAW
                     EKLSHGIKQSKKEIKPLDAPEIQ"
     gene            complement(2202..3068)
                     /locus_tag="RJ259_000911"
     CDS             complement(2202..3068)
                     /locus_tag="RJ259_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
                     /protein_id="HDV7366631.1"
                     /translation="MNKKFSYPIPNFTDRRKSIIFWRYLRFQARKILYFPQVRLLEKT
                     LNKEKNKHLKDFFSQRPYACYNATRRFCDKSFKANERVKTLIYDVDKGLACFKFLPEE
                     QIIFSFDEDFELFLGYNYNVCEEGFWAFSLKFKKYTILQCNFCFTLENNLLLSCIQGH
                     KYKDFNILEINKILTKKCHGLRPVALLIECSKMLCEILKLQATLGVHEKNQIRSQKGK
                     EKGYFVDYQKIWLENGGELIKINKHKYYKLHHSQKNLEEIPSQKRSMYKKRFAMLEEI
                     KTNLDKTLSIQD"
     gene            complement(3061..4167)
                     /gene="rseP"
                     /locus_tag="RJ259_000912"
     CDS             complement(3061..4167)
                     /gene="rseP"
                     /locus_tag="RJ259_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HDV7366632.1"
                     /translation="MRSLLFLIVILILGIKFYSIEFLATVLVISFLIFFHELGHFLAA
                     RSLGVKVEVFSIGFGKSLIEREFKGTNYRLSTLPLGGYVKLKGQDDMRPGFENLDKDS
                     YSILSPLKKIYILFAGPFFNLILAFFLYIIIGNLGLNKLAPQIGNIAPNSAAQEIGLQ
                     KNDTILEINGIRIQTFDEISKHLSLDPLKILINREGKNLEFILTPKIGQGYNDFGQIV
                     EKPQLGVSPNGTSTLVKHQGLESFKYAAQESFQASTLIIKGIVKLISGEVEAKNLGGI
                     ITMTEITSKAAQNSFTLLLFITALISINLGILNLLPIPMLDGGHILFNLYEMIFRRKV
                     PQRTFEYLSYTGMAILLSLMLFATYNDISRIIGE"
     gene            complement(4164..4700)
                     /gene="pgsA"
                     /locus_tag="RJ259_000913"
     CDS             complement(4164..4700)
                     /gene="pgsA"
                     /locus_tag="RJ259_000913"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HDV7366633.1"
                     /translation="MNLPNILAIFRMVLAPLLFFLLIHHFENIHQSWINYFAALTFSL
                     AALSDFFDGYIARTWKQTTKLGGILDPLADKMLVLAAFLGLLLTGKANEWVIYIILVR
                     EFFITGFRVVMISENLNVNASFAGKLKTAFQMTAIGFLIMEWIGGEILLYIALILTLY
                     SGFEYIYTYIKAQKKGEK"
     gene            complement(4825..5430)
                     /locus_tag="RJ259_000914"
     CDS             complement(4825..5430)
                     /locus_tag="RJ259_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDV7366634.1"
                     /translation="MKKELEIFSTRYSCRNFKNEKLKKEDLNSILEIARLSPSSLGLE
                     PWKFIVVQDEKRKEELSKICNQQKHVKDCAALIIIISRLDFLDYFEEKLRKRDMSETE
                     MQKRLDTYMPFLKSLNQEQKISYAREQAHIALASILYSANALNIASCTIGGFDKEKLD
                     SYLSLDIQKERSSLVVALGYCNDKKNPQKNRFSFDEVVKFI"
     gene            complement(5430..6050)
                     /locus_tag="RJ259_000915"
     CDS             complement(5430..6050)
                     /locus_tag="RJ259_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDV7366635.1"
                     /translation="MNFKELISKRRACKLFNDKKINEKDLHFILESGVLAPSSHGFEP
                     WKFVVLEQKEHNLKLSTLCYNQQNVASASHNIIFLARKDLQSKDEFAQKQVRRFSGSS
                     EENFQKILEIYTHKTNAMNDNELYHYAQLQCYLAMMQMSLAAMSLGIDSCMIGGFEKA
                     KVDNFLNLTYPFETAVILSLGYKAHEPKYSTQRLNFNEVVEFYKEK"
     gene            complement(6114..6539)
                     /locus_tag="RJ259_000916"
     CDS             complement(6114..6539)
                     /locus_tag="RJ259_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7366636.1"
                     /translation="MKEIKLKEDLEKIYPLIKQLRNNLSLKDFLDKIQLATQTQHYKL
                     FAYENEGSYKAACGVMPFNVLYHNHCLYICDFVVDEALRGKGIGQAFLKKIQIWAKDQ
                     GYEELELSSSFFRTQAHEFYIQKMGFEKSGFVFKKNIKL"
     gene            complement(6551..7639)
                     /locus_tag="RJ259_000917"
     CDS             complement(6551..7639)
                     /locus_tag="RJ259_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HDV7366637.1"
                     /translation="MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQSKTDK
                     DLPFLLENLLNQYDFITLFTSPLHYATVAKILATLNDDNLILKDDTLVPDKAEFSKNS
                     FVCNFSNSKINVVKINPSEKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEI
                     NIKLTKLLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKL
                     KISFAESCTGGLCASTLTKISGVSEIFEGSIVSYSNRIKHEWLGISESILENNGEYSE
                     RCVYFMLKGIFKTANPDFALAISGVVGEKDEGKIKSGTIYIGAMFRDGTFIQETLYLD
                     GDREFMQEQAVLATFCLLLKLKPEIFEI"
     gene            7738..10485
                     /gene="ileS"
                     /locus_tag="RJ259_000918"
     CDS             7738..10485
                     /gene="ileS"
                     /locus_tag="RJ259_000918"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HDV7366638.1"
                     /translation="MDYKETLLLPSTTFAMRANLAELEPQRFKKWFEQNYAYETMKEN
                     RKNAKKSFTLHDGPPYANGHIHIGHALNKILKETIIKTHYFKGESVRFTPGWDCHGLP
                     IEQQVEVKLGEKKKSLSKKEIREFCRQHASEFVDIQREEFKNLGIIADWDKPYLTMKF
                     EFEAAIYRTLCEIAKKGLLCERSKPVFWSWAAKSALAEAEVEYQDKEDYSIFVAFDLD
                     AKACEKLGVSKASAVIWTTTPWTLVANQAIALNPNENYVITKEGLIFASALLKSMVEK
                     GLTSGEIQKELNAKEFEKLEAINPLNGRKSVLIMGEHVLMDGGSGLVHTAPGHGEDDY
                     YACLKYGIEVLMPVDDSGCYDETLRAKGLLPSHLLEEFIGLHIFKANEKILELLGEKL
                     LHSSKFIHSYPFCWRTHKPVIYRATKQWFILMDEPKLQGKTLRECAKEQLLKTTFYPQ
                     SGVKRIGSMVENRPDWCISRQRDWGTPIAFFRDKNTKEVIFDDELFDFVAAIFEKHGA
                     DAWWEFEIKDLIPTNSKYKAENLEKVYDILDVWFDSGSTFNAVLNSGLYDAGEKRASM
                     YLEGSDQHRGWFQSSLLVGTAINESAPYESILTHGFTTDEKGQKMSKSKGNVIAPEYV
                     AKTYGVEILRLWILLSDYSSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKDLEV
                     KEFSFIDKWILSRATKVFKASKEAFFAYEFAKGFSLLLNFLSADLSGIYLDISKDRLY
                     CDSENAQRRKSAQVAMALIAKELLNLLAPNLSYSVDEALEHANVLIKGDAKDVFDLSL
                     TQDFDYDFGIDDTFLMSAREKFFEQIDILKKDKIIKSTLELNLNISFNKFPNEELADW
                     FMVSQISNENEEILAEFEVENEKFKITKASLCKCPRCWKLQSKDEETPCLRCEEVLKG
                     V"
     gene            10485..10595
                     /locus_tag="RJ259_000919"
     CDS             10485..10595
                     /locus_tag="RJ259_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366639.1"
                     /translation="MLENPIPNSIIIATIAVVLAFSALAVFLIKKTKENK"
     gene            10592..11953
                     /gene="gatA"
                     /locus_tag="RJ259_000920"
     CDS             10592..11953
                     /gene="gatA"
                     /locus_tag="RJ259_000920"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HDV7366640.1"
                     /translation="MITLKEALKYSKEELENLKKELNEKAKKEKKIGAYIEQFLDKDL
                     SVSGEGVPVAIKDNISVKGWELTSASKILQGYIAPYDASAIVNLKANGFSPFGRCNMD
                     EFAMGSSTASSCYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA
                     AFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSA
                     NIEFIKTASNLNANKKLKIAVIENYVNDADSEVKNALLKTIDMLKANGHEIVYKNLLD
                     SKFDIAAYYIIATAEASANLSRYDGVRYGKRSENIQNLKEMYVNTRSEGFGEEVKRRI
                     LLGTFVLSSGYYDAYYIKAQKARAFIKAKYEEILQDCDLIFMPVTPTTAFKFDTQKSP
                     MQTYLEDVYTISVNLAGLGGISVPVAKDKEGLNISAQLICKAYDEQTLLDGALSLEQM
                     IKH"
     gene            11963..13420
                     /gene="guaB"
                     /locus_tag="RJ259_000921"
     CDS             11963..13420
                     /gene="guaB"
                     /locus_tag="RJ259_000921"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HDV7366641.1"
                     /translation="MKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLI
                     SAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSESGVIIDPIFVSPK
                     ASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDLRFESDFSNLVENVMTKMPLITA
                     PKGCTLDDAEKIFSTNKVEKLPIVDEQGRLEGLITIKDLKKRKEYPDANKDNFGRLRV
                     GAAIGVGQMDRVNALVEAGVDVVVLDSAHGHSKGIIDTVKAIKAKYPNLDLIAGNIAT
                     AAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIAD
                     GGIKYSGDIAKALAVGASSVMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSLGAMQK
                     GSSDRYFQQGTAQDKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQ
                     KRAEFVEITTAGLKESHVHDVTITHEAPNYKVNHQ"
     gene            13417..13590
                     /gene="xseB"
                     /locus_tag="RJ259_000922"
     CDS             13417..13590
                     /gene="xseB"
                     /locus_tag="RJ259_000922"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HDV7366642.1"
                     /translation="MSFEENLKHANESLEKLNNQELALDESVKIYKEGLESIKKARLE
                     LEKAKLEVEQIDE"
     gene            13583..14359
                     /locus_tag="RJ259_000923"
     CDS             13583..14359
                     /locus_tag="RJ259_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HDV7366643.1"
                     /translation="MSKIAALQFPTLALSESRLDYYLKASKDNGVNLVVLGEYVINSF
                     FTELLHMPKNMIKEQSEAKKESLIKLAKKYELEIIAPYVSVEAKSYKKLCLKVTPNGV
                     KSYEQQILMPYEHWNEEKFFSNKTPSELKIFTFNYEKLKCALLFGFETHFDIFWQQIM
                     AKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTSILRVNRIGKTKDEWNFYGDTLFI
                     NAFGEIESKLGSEEEMLIIEPKKSDEARKLWGFDKILKNF"
     gene            14371..>14551
                     /locus_tag="RJ259_000924"
     CDS             14371..>14551
                     /locus_tag="RJ259_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366644.1"
                     /translation="MRKILLQIFIFSVLFIVTFTINRILMQNSFIPTGLISDKNEIFL
                     MYLLGVFHDIRFLSAA"
BASE COUNT         5038 a         2011 c         2532 g         4970 t
ORIGIN      
        1 atgaaaaaat atttaattcc agatgagctt aaaaaacatg gcttaaaatc caatgaatta
       61 tctattgatg atgaaactat agagttaatc attagtgatt atactcgtga atcaggagtc
      121 agaaatttgc gtcgcaaagt ggcagagttg tgtcgtaaga gtgctaaaaa actactttta
      181 gaaaatatta aaaaagtcat tattaataca aaaaatttga atgaattttt agataaaaaa
      241 gtttttgaaa tagaaaaaaa taatggagaa aatcaagtag gtcaggttaa tggtttggct
      301 tggacaagtg taggtggaga tgttttaaaa gtagaggctg taaaaattaa aggtaaagga
      361 gaattaacgc tcacgggaag tttgggtgat gtaatgaaag aatcagctag aattgctttt
      421 agcatgataa aagttttaat cgatgaagga aaaataaaaa tacctaaaaa aataattatt
      481 gatcctaaag ttaatgttta tgatagttat aatattcata tacatgtgcc agatggagct
      541 actccaaaag atggcccaag tgcaggtatt acgataagca cagctattgc ttctattttt
      601 agtgataaaa aggttaaagc agatgttgca atgacgggtg aaatagattt aaaaggaaaa
      661 gttttaccaa taggcggatt aaaagaaaaa ttaattgcag cttataaagc agatataaaa
      721 acagctttaa tcccaagaaa aaattacgaa agagatttaa aagatattcc tagtgaggtt
      781 agagacaata tggaaatcat tgctgttgat actttcagtg atgttttaga atatactttg
      841 gtttaatttt attttgagga taaatgtata agaaagcaaa ctttttacaa gtttgctttt
      901 aaaagattat agtccttcaa aaggattatt gattacttct tttctatcca ctatataagg
      961 gataagggct acatgtcttg cgcgtttgat tgcaacttct accatttctt ggtatttttt
     1021 gcttgtgcct gttaaacggc gtggcatgat tttaaatctt tcagataaag catgttttaa
     1081 cattgctgta tctttataat caataaattc aacttttgct tcagtgtatt tgcaatattt
     1141 gcgagagtat tttctttttt ctgccatagt ttatccttta aaatggtaaa ttagtatcat
     1201 cgctatcata agcatcgata tcaatttctt ttaatttttc ttcgtgttgt gggctttggt
     1261 ttctctgtgg agcagggttt gcttttgctt tattaaaatt ttgattttca ctcatataag
     1321 gatcatagct ttgattttca tagtttccac tataattgtt gtttgaaaag ctattattgc
     1381 caaaatttcc gccttgttgt ggagcattgg aattgccaag catttccata ttttcaactt
     1441 gaatgctatg tttagagcga ttttgtccat tttgatcact ccattgttca aatctcaaac
     1501 gtccttctat gagtactttt gaaccttttg taaggtattg gtttgcaact tctgcggtgc
     1561 gaccataaaa gcttatatca ataaagcaag tttcttctct tttttctcca tttgcggtaa
     1621 atcttcttgt tactgctata gcggaagctc caatagcact accgctttgt gcataacgca
     1681 tttctatatc acgtgtaaga tttccaacca aaacaacttt gttaaacatc tttttcctta
     1741 ttgaatttca ggagcatcta aaggtttaat ttctttttta gattgcttaa tcccgtggct
     1801 tagtttttcc caagctgcaa tttctttttt attttcatat tttacgatta aaaatcttat
     1861 tacttcttca gtgattctta acaccctttc aagctcagcg atcaagtttg taggagcttt
     1921 gaaataaatc acaaaataag ttcctctttc gtattttttg attttatacg ctaattttct
     1981 agtacccatt ggaacaacag tttcaatttc tgcactattt ttggttagga cttctttaac
     2041 gaattccaac ttcgtattca cttcctcttc agtaagtgtt ggttttaaga taaataaaac
     2101 ctcataatgt ttcatctttt ctccttatgg atattaaagc ccatttttat gagcaaggat
     2161 tttgcataaa gcaagactag attatatcaa aatatactta attagtcttg aatacttaag
     2221 gttttatcta aatttgtttt gatttcttca agcatagcaa aacgtttttt atacatggag
     2281 cgtttttgcg aagggatttc ttctaggttt ttttgagagt ggtggagttt atagtatttg
     2341 tgtttattga tttttattaa ttctccacca ttttctagcc aaattttttg ataatctaca
     2401 aaatagcctt tttcttttcc tttttgagaa cggatttgat ttttttcatg tacacctaaa
     2461 gtagcttgaa gttttaaaat ttcacaaagc atcttagagc attctataag taaagcaaca
     2521 gggcgcaaac catgacattt tttagttaaa attttattaa tttctaaaat attaaaatct
     2581 ttgtatttat gtccttgtat acaagaaagt agaagattgt tttctaaagt aaagcaaaaa
     2641 ttacattgta agattgtgta ttttttaaat tttaaagaaa aagcccaaaa accttcttcg
     2701 caaacattat agttatatcc taaaaaaagc tcaaaatctt catcaaaaga aaaaattatt
     2761 tgttcctcgg gaagaaattt aaaacaagcg agtcccttat caacatcata aataagtgtt
     2821 ttaacacgtt catttgcttt aaaactttta tcgcaaaatc ttcttgtagc attgtaacaa
     2881 gcataaggtc tttgagagaa aaagtctttt aaatgtttat ttttttcttt attaagcgtt
     2941 ttttctagaa gtcttacttg aggaaaatat aaaatttttc ttgcttgaaa acgcaaatag
     3001 cgccaaaaga ttatactttt tcttctatca gtaaaatttg gaatagggta ggaaaatttt
     3061 ttattcacct ataatccttg atatatcatt ataagttgca aagagcatta aacttaaaag
     3121 tattgccatg cctgtatagc ttaaatattc aaaagtacgc tgtggaactt tgcgtctaaa
     3181 aatcatttca taaagattaa aaagtatatg tcctccatca agcataggaa taggtaaaag
     3241 atttaaaatg cctaaattta tagaaattaa agcagtgata aataaaagca aagtaaagct
     3301 attttgtgca gcctttgagg taatttcagt catggtgata ataccgccta aattttttgc
     3361 ttcaacttca ccacttatga gttttacaat acccttaatg atgagtgtag aagcttgaaa
     3421 actttcttgt gcggcatatt taaaactttc taaaccttgg tgttttacaa gagtgcttgt
     3481 cccatttgga ctgactccaa gttgaggttt ttcaacgatt tgtccaaagt cattgtatcc
     3541 ttgtcctatt tttggagtta aaataaattc taaatttttt ccttctctat tgattaatat
     3601 tttcaaagga tctaaactta aatgctttga aatttcatca aaggtttgaa ttcttatacc
     3661 gttaatttct aagatagtat catttttttg aagtcctatt tcttgtgcag cagagtttgg
     3721 cgctatgttt cctatttgcg gagcaagttt gtttagacct aaatttccta tgataatata
     3781 aagaaaaaaa gctaaaatta gattaaaaaa tggtccagca aaaagaatat aaatcttttt
     3841 taaaggactt aaaatgctat agctatcttt gtctagattt tcaaaaccag gacgcatatc
     3901 atcttgtcct ttaagtttaa catatcctcc aagtggtaaa gtgcttaagc gatagtttgt
     3961 gcctttaaat tcacgctcta taagactttt tccaaatcct atactaaaaa cttcaacttt
     4021 tacacccaaa gatcttgcag ccaaaaaatg tcctaattcg tgaaagaaaa ttaaaaatga
     4081 gatgactaaa acagttgcta aaaattcaat agaataaaat ttaattccca aaatcaaaat
     4141 aacaattaaa aataataaag atctcatttt tctccttttt tttgagcttt tatataagta
     4201 tagatgtatt caaatccaga ataaagagtt aaaatcaaag ctatgtaaag tagaatttca
     4261 ccgcctatcc actccatgat taaaaatcct atcgcagtca tttgaaaagc ggttttaagt
     4321 ttgcctgcaa aagaagcatt gacatttaaa ttttcgctaa tcattacaac tctaaaacct
     4381 gtgataaaaa attcccttac taatataata taaattaccc attcattagc ttttcctgta
     4441 agtaaaagcc ctaaaaaagc tgctaaaaca agcattttat cggctaatgg atctaagatt
     4501 ccaccaagtt ttgtagtttg tttccaagtt cttgcgatgt atccatcaaa aaaatcactt
     4561 aaagctgcta atgaaaaagt taaagcagca aaatagttaa tccaactttg atgaatattt
     4621 tcaaaatgat gaattaataa aaaaaatagc aaaggcgcta aaaccattct aaaaatcgcc
     4681 aagatattgg gtaaattcat aacaagcctt gtgaaattaa atgtaaaatt ataatcaaaa
     4741 ttgtataaaa tttaagcaaa gacttagtaa aaatacaaaa aagaatcagt ttatttttat
     4801 ttaaattttg cttaaaagca aaatttaaat aaattttaca acttcatcaa aactaaaacg
     4861 atttttttga ggattttttt tatcgttgca atatcctaaa gccaccacca aacttgatct
     4921 ttctttttga atatcaagtg ataaataaga atcaagcttt tctttatcaa aaccacctat
     4981 agtgcagctt gctatattta aagcattagc actgtaaagt atgctagcta gagctatatg
     5041 agcttgttct cttgcataag atattttttg ttcttgattt agagatttta aaaaaggcat
     5101 ataagtatct aagcgttttt gcatttctgt ttcactcata tctctttttc taagtttttc
     5161 ttcaaaataa tccaaaaaat caagtcttga aatgattata attaatgcag cacaatcttt
     5221 tacatgtttt tgttgattgc aaattttaga aagttcttct tttcttttct catcttgcac
     5281 tactataaat ttccaaggtt ccagtcccaa ggagcttggg cttaatcttg ctatttctaa
     5341 aatagaattt aaatcctctt ttttgagttt ttcattttta aaatttctac aagaatatct
     5401 tgtgctaaaa atttcaagtt cttttttcat tatttttcct tgtaaaattc gacgacttca
     5461 ttaaaattta agcgttgagt agaatatttt ggttcatggg ctttatatcc taaggataaa
     5521 attacagcag tttcaaaagg ataagttaaa ttaagaaaat tatcaacttt agctttttca
     5581 aagccaccta tcatacaaga atcaatacct aagctcattg cagctagcga catttgcatc
     5641 atagcaagat agcattgaag ttgtgcgtaa tgatagagtt cattatcatt cattgcattg
     5701 gttttatggg tgtaaatttc taaaattttt tgaaaatttt cttcgctaga acctgagaaa
     5761 cgacgcactt gtttttgtgc aaattcatct ttgctttgaa gatcttttct tgctagaaaa
     5821 atgatattat gactcgcact tgctacattt tgttgattgt aacatagggt tgagagttta
     5881 agattgtgtt ctttttgttc taatactaca aatttccaag gctcaaatcc atgtgagctt
     5941 ggggctaaga ctccactttc taagataaaa tgcaaatcct tttcattgat ttttttatca
     6001 ttaaaaagtt tacaagctct gcgttttgaa attagttctt taaaattcat tttattcctt
     6061 aaaatcaaaa ataataatat taattataaa atgcaaagct taatcaaaaa atattatagt
     6121 ttgatatttt tcttaaaaac aaaaccggat ttttcaaaac ccattttttg gatataaaat
     6181 tcatgagctt gtgttctaaa aaaacttgaa cttagttcta attcttcata tccttgatct
     6241 tttgcccaaa tttggatttt tttcaaaaaa gcttgaccta taccttttcc tcttaaagct
     6301 tcatctacga caaaatcaca aatataaaga caatgattat gataaagtac attaaagggc
     6361 atgactccac aagctgcttt gtagcttccc tcattttcat aggcaaaaag tttataatgt
     6421 tgagtttgtg tagcaagttg gattttgtct aaaaaatctt tcaaagatag gttatttctt
     6481 aattgtttta tcaagggata aattttttcc aagtcttctt ttagcttaat ttctttcatt
     6541 tttaaatccc ttaaatttca aaaatctcag gttttaattt taaaagtagg caaaaagttg
     6601 ccaaaacagc ttgttcttgc ataaattcac gatctccatc taaataaagc gtttcttgga
     6661 taaaagttcc atctctaaac attgcaccta tataaatagt gcctgatttt atttttccct
     6721 catctttttc gccaactact ccgctaatag ctaaggcaaa atcaggatta gctgttttaa
     6781 aaataccttt tagcataaaa taaacacaac gttcactgta ttcgccatta ttttctaaga
     6841 tgctttcgct aattccaagc cattcgtgtt tgatgcggtt ggaataactt acaatagatc
     6901 cttcaaaaat ttcacttaca cctgaaattt tggttaaggt gcttgcacaa agtccgcctg
     6961 tgcaactttc agcaaaagaa atttttaatt ttttttctaa aagtttagag cttataaaat
     7021 gtataggatc tttacctaaa aacacctttt gtccaaaaag attttttacg ctatttaaaa
     7081 aaccatcaag ttttccaaaa ttagcgcaag tggccttaat aagcacaaga ttatctaaaa
     7141 gcttggttaa ttttatattt atctcataag attttgttag ggtttgcagt agtaatatag
     7201 cgctttcatc atccatgcca aaaatgcaaa aatatgcaaa atttaatttt atatgcccaa
     7261 gaagattggg taatttttcg cttggattta ttttaacgac attgattttt gaatttgaaa
     7321 aattacacac aaagctattt ttactaaatt ctgctttatc tggaaccaag gtatcatctt
     7381 ttaagataag attatcatca tttaaagttg ctaaaatttt agcaacagtc gcataatgca
     7441 aagggcttgt aaataaagtg ataaaatcat actgatttaa gaggttttca agcaaaaagg
     7501 gtaaatcttt atcggtttta ctttgtatgc gaatttcgtt gatttcttta aatttttctt
     7561 cataagttct ataaatataa tttttgaatt tttcgtttat agtaagctca tctcctataa
     7621 gataaagcaa atgtttcata aattttcctt tttttcttat aattatagcc aaaaacaaag
     7681 tagaaattaa agctaatttg agtagaattt aagattatta aaaattaggt ggaaaaaatg
     7741 gactacaaag aaactctact tttgcccagc actacttttg ctatgcgggc gaatttagcg
     7801 gaacttgaac cgcaaagatt taaaaaatgg tttgagcaaa attatgctta tgaaacaatg
     7861 aaagaaaatc gcaaaaatgc gaaaaaaagt tttactttac acgatggccc cccttatgct
     7921 aacggacata tccatatagg acatgcttta aataaaattt taaaagaaac tattatcaaa
     7981 acgcattatt ttaaaggtga gagtgtgcgt tttactccag ggtgggattg tcatggttta
     8041 cctatagagc aacaagtaga agtaaagctt ggagaaaaga aaaaaagctt aagtaaaaaa
     8101 gaaattcgtg agttttgcag acaacatgcg agtgaatttg tagatatcca aagagaagaa
     8161 tttaaaaatt taggcattat tgcggattgg gataagcctt atttgactat gaaatttgag
     8221 tttgaagcag cgatttatag aactttatgc gagattgcta aaaaaggctt actttgtgag
     8281 cgttctaaac ctgttttttg gagttgggcg gcaaagtcag ctttagcgga agctgaagta
     8341 gagtatcaag ataaagagga ttattctatt tttgtggctt ttgatttaga tgcaaaagct
     8401 tgcgaaaaat taggcgtttc aaaagcaagc gcagtgatat ggacaactac gccttggact
     8461 ttggtggcta atcaagctat agccttaaat cctaacgaaa attatgtgat cactaaagaa
     8521 ggtttgattt ttgcaagtgc tttacttaaa agcatggtag aaaaaggact tacaagtgga
     8581 gaaattcaaa aagaattaaa cgcaaaagaa tttgaaaaac ttgaagctat caatccttta
     8641 aatggaagaa aatctgtttt aatcatgggt gagcatgtat tgatggatgg tggaagtgga
     8701 cttgtacata ctgcaccagg acatggcgaa gatgattact atgcttgttt gaaatacggt
     8761 attgaagttt taatgcctgt tgatgatagt ggatgttatg atgaaacttt aagagctaaa
     8821 gggcttttgc cttctcattt gcttgaagag tttataggtc ttcatatttt taaggccaat
     8881 gaaaaaattt tagaactttt aggcgaaaaa cttttacatt cttctaaatt tatacactct
     8941 tatccatttt gttggagaac gcataagcct gtgatttata gagctactaa acaatggttt
     9001 attttaatgg atgaaccaaa acttcaagga aaaactttaa gagagtgtgc aaaagaacaa
     9061 cttttaaaaa caacctttta tccgcaaagt ggggtaaaaa gaataggttc tatggtggaa
     9121 aatcgcccag attggtgtat ttcaagacaa agggactggg gaacgcctat agcctttttt
     9181 agagataaaa acactaaaga agtgattttt gatgatgaac tttttgactt tgtagcagct
     9241 atttttgaaa aacacggtgc tgatgcgtgg tgggagtttg aaatcaaaga tttaattcct
     9301 acaaattcaa aatacaaagc tgaaaattta gaaaaagtat atgatatttt agatgtttgg
     9361 tttgatagcg gaagtacttt taatgcagtt ttaaatagcg gactttatga cgcaggagaa
     9421 aaaagagcaa gtatgtattt agaaggaagc gatcagcatc ggggttggtt tcaaagctct
     9481 ttgcttgtag gtacagcgat caatgaaagc gcaccttatg aaagcatttt aactcatggt
     9541 tttaccaccg atgaaaaagg gcaaaaaatg tctaaatcta aaggcaacgt gatcgctcct
     9601 gaatatgtag caaaaaccta tggagttgaa attttaagac tttggatact tttaagtgat
     9661 tattcaagtg atttaaaaat ttcagacaat atcttaaaac aagtgggcga acaataccgc
     9721 aaaataagaa acactataag atttttactt gccaatacaa atgacttaaa agatttagaa
     9781 gttaaagaat ttagttttat tgataaatgg atattaagcc gtgcaactaa agtttttaaa
     9841 gcaagtaaag aagcattttt tgcttatgaa tttgctaaag gttttagttt gcttttaaat
     9901 ttcttaagtg cggatttaag tgggatttat cttgatatca gtaaagatag actttattgt
     9961 gatagtgaaa atgctcaaag aagaaaatct gctcaagtgg ctatggcttt gatagcaaaa
    10021 gaacttttaa atttacttgc tccaaattta agctatagtg tagatgaggc tttagaacat
    10081 gctaatgttt taatcaaagg cgatgcaaaa gatgtatttg atttgagttt aactcaggat
    10141 tttgattatg attttggtat agatgataca tttttaatga gtgctagaga gaaatttttt
    10201 gaacagattg atatacttaa aaaagataaa atcattaaat ccaccttgga attaaattta
    10261 aacattagtt ttaataaatt cccaaatgag gaattagccg attggtttat ggtaagtcaa
    10321 attagtaatg aaaatgaaga aattttggct gaatttgaag tagagaatga gaaatttaaa
    10381 atcaccaaag cttcactttg taaatgccca agatgttgga aacttcaaag taaagatgaa
    10441 gaaacacctt gtttaagatg tgaagaagtt ttaaaagggg tttaatgtta gaaaatccta
    10501 ttccaaatag tattatcatt gcaactatag cggtggtttt ggcttttagt gctttagcag
    10561 tatttttgat caaaaaaaca aaggaaaata aatgataact ttaaaagaag ctttaaaata
    10621 ctccaaagaa gaacttgaaa atttaaaaaa agaactcaat gaaaaagcaa aaaaagaaaa
    10681 aaaaataggt gcttatatcg aacaattttt agataaggac ttaagtgttt caggtgaagg
    10741 tgtgcctgta gctataaaag ataatatcag tgtaaagggc tgggagctta ctagtgcgag
    10801 taagatttta caaggttata tcgctcctta tgatgcaagt gcgattgtta atttaaaggc
    10861 taacggtttt tctccttttg ggcgttgcaa tatggatgaa tttgctatgg gaagttcaac
    10921 agcgagttct tgttatggaa aaactttaaa tcctttaaat tttgagcgtg ttccaggtgg
    10981 gtcaagtggt ggaagtgctg ctgcggtagc gggtggcttg gctttagcaa gtttaggttc
    11041 tgatacaggt ggatccgtgc gccaacctgc ggctttttgt ggttgtgtag gatttaaacc
    11101 gagttatgga agagtaagtc gctatggttt ggcttcttat tcttcaagtt tggatcaaat
    11161 cggagtttta acgcaaaatg tagaagatgc ggcaatttta tatgatgcga tcgcaggata
    11221 tgataaaatg gatagcacga gtgcaaatat cgagtttatc aaaaccgctt caaatttaaa
    11281 tgcaaataaa aaattaaaaa ttgcagtgat tgaaaattat gtcaatgatg cagatagcga
    11341 agtaaaaaac gcacttttaa aaaccataga tatgttaaaa gctaatggac atgagattgt
    11401 atataaaaat ttgcttgatt ctaagtttga tatcgcagcg tattatatca tcgcaacagc
    11461 tgaagcaagt gcaaatttaa gtcgttatga tggggtgcgt tatggcaagc gttctgaaaa
    11521 tatccaaaat ttaaaagaaa tgtatgtaaa tacacgcagc gaaggttttg gcgaagaagt
    11581 aaaaagaaga attttgttag gaacttttgt tttaagtagt ggatattatg atgcgtatta
    11641 tattaaagca caaaaagcta gagcttttat caaggcaaaa tatgaagaaa ttttgcaaga
    11701 ttgtgatctt atttttatgc ctgtaacgcc tacaacggct tttaaatttg atactcaaaa
    11761 aagccctatg caaacttatt tagaagatgt ttatactatc tctgtaaatt tagcaggact
    11821 tggaggcatt agtgtgcctg ttgcaaaaga taaagaaggg cttaatatat cagcacaact
    11881 gatttgcaaa gcttatgatg aacaaacctt attagatggg gctttaagtt tagaacaaat
    11941 gattaaacat taaggatgaa agatgaaaat tgtaaaaaga gctttaactt ttgaagatgt
    12001 attattgcgt cctgggtatt ctgaagtttt acctaaggaa gtaaaaattc acactaaatt
    12061 aacaaaaaat atcactttaa atatgccttt aatctctgcg gctatggata cagttactga
    12121 acacagggct gctattatga tggcaagact tggagggctt ggagtgattc ataaaaacat
    12181 ggatatagcc tcacaggtta gagaagtaaa aagagtgaaa aaaagcgaaa gcggggtgat
    12241 tatcgatcct atttttgtaa gtcctaaggc aagtgttgcg gaagctttag aaattatggc
    12301 agagtataga atttcaggtg ttcctgtagt agatgaagat aagaaactaa taggcatact
    12361 taccaatcgt gatttaagat ttgagagtga tttttcaaat ttggttgaaa atgttatgac
    12421 taaaatgcct ttaattactg ctccaaaggg ttgtacttta gatgatgcgg aaaaaatttt
    12481 cagcaccaac aaagtagaaa aacttcctat agttgatgaa caaggacgct tggaaggact
    12541 tatcactata aaagatctta aaaaacgcaa agaatatcct gatgccaata aagataattt
    12601 tggcagatta cgcgtgggtg cggctatagg agtagggcaa atggatcgtg tgaatgcttt
    12661 agttgaagca ggcgttgatg ttgttgtgct tgattctgcg catgggcatt ctaagggtat
    12721 tattgataca gtaaaagcaa ttaaggctaa atatccaaat ttagatctta tcgcaggaaa
    12781 tatcgccact gcagctgcag caaaagcact ttgtgaagca ggagtagatg cggttaaagt
    12841 aggtattggg ccaggaagta tttgtactac acgtattgtt tcaggtgtgg gcgtgcctca
    12901 aatttcagcc attgatgagt gcgtggaaga agcaaataaa tttggcgttc ctgtgatagc
    12961 tgatggcggg attaaatatt caggtgatat cgcaaaagct ttagctgtag gtgcgagttc
    13021 tgttatgata ggatcgcttt tagctggaac agatgagagt ccaggagagc tttttactta
    13081 tcaaggaaga caatataagt cttatcgtgg tatgggctca cttggggcta tgcaaaaggg
    13141 aagttcggat agatattttc agcaaggtac tgctcaagat aaactcgttc ctgaaggtat
    13201 agaagggcgt gttccttatg tgggaagtat aagaagcgtg gtgcatcaac ttttaggagg
    13261 tttgcgttct tctatgggtt atgttggggc taaagatata gaagattttc aaaaaagagc
    13321 cgaatttgtt gaaattacca ctgcagggct taaagaaagt cacgtgcatg atgttactat
    13381 cactcatgaa gcaccaaact acaaggttaa tcatcaatga gttttgaaga aaatttaaaa
    13441 cacgctaatg aatctttgga aaaattaaat aatcaagagc ttgccttaga tgaaagtgta
    13501 aaaatttata aagaaggttt agagagtatc aaaaaagcaa gacttgagct tgaaaaagca
    13561 aaattagaag tggagcaaat cgatgagtaa aatagcagct ttacagtttc caactttagc
    13621 tttaagtgaa tcaaggcttg attattatct taaagcttca aaagacaatg gagtaaattt
    13681 agtagttttg ggagaatatg tgatcaacag tttttttaca gaacttttgc atatgccaaa
    13741 aaatatgata aaagaacaaa gcgaagctaa aaaagaaagc ttgattaaac ttgctaaaaa
    13801 atacgaatta gaaattatcg ctccttatgt aagcgttgaa gctaaaagtt ataaaaaact
    13861 ttgcttaaaa gttactccaa atggtgtgaa aagttatgaa cagcaaattt taatgcctta
    13921 tgaacattgg aatgaagaaa aatttttcag caacaaaact ccatcagaat taaaaatttt
    13981 tacttttaat tatgaaaaat taaaatgtgc tttgcttttt ggttttgaga cacattttga
    14041 tattttttgg caacagatta tggcgaaaaa aattgatttg gttatcgttc ctagtgcttg
    14101 tacctttgaa agcaaacaaa gatgggaaga acttttaaaa acaagagctt ttttaaattc
    14161 tacaagcatt ttaagagtaa atcgcatagg caaaacaaaa gatgagtgga atttttacgg
    14221 cgatactttg tttattaatg cttttggtga gatagaaagt aaattaggtt ctgaagaaga
    14281 aatgcttatt atagagccta aaaaaagtga tgaagcaaga aaactttggg gttttgataa
    14341 aattcttaag aatttttaaa gaaggtgaat atgagaaaaa ttttacttca aatttttatt
    14401 tttagtgtat tatttatagt aacttttacc attaatcgta ttttaatgca aaattctttt
    14461 atccctactg gtttaattag tgataaaaat gaaatctttt taatgtatct tttaggtgtt
    14521 tttcatgata taagattttt aagcgcagcg t
//
LOCUS       DAPIWJ010000038        14299 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.038, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000038 DAPIWJ010000000
VERSION     DAPIWJ010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14299)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14299)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14299
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.038"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(216..605)
                     /locus_tag="RJ259_000925"
     CDS             complement(216..605)
                     /locus_tag="RJ259_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HDV7366645.1"
                     /translation="MKNVITFGTFDLFHYGHLRILERAASLGDKLIVGVSSDSLNFAK
                     KHRYPIYSEQERLNIISSLKCVSCVFLEEALELKRDYLLKYQANILVMGDDWKGKFDC
                     FNDICDVIYFERTPSISTTEIIERIKL"
     gene            complement(605..1552)
                     /locus_tag="RJ259_000926"
     CDS             complement(605..1552)
                     /locus_tag="RJ259_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HDV7366646.1"
                     /translation="MNTLEIAKEVFEKEAQAILDLAKNLDENFNQAVNLMLNTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTSEDVLIAISNSGETEE
                     ILKIIPAIKKRKIPLIVMCGKKNSTLVKQGDIFLNIAVEKEACPLQLAPMSSTTATLV
                     MGDALAAALMKVRNFKPDDFALFHPGGSLGRKLLTKVKDLMVSSNLPIVHPDTEFNDL
                     VDVMTSGRLGLCVVLENEKLVGIITDGDLRRALKTSDKPRFDFRAKEIMSTNPKVVDA
                     DAMASEAEEIMLKHKIKEIIVGKEERVMGIIQLYAIGRV"
     gene            complement(1562..3220)
                     /locus_tag="RJ259_000927"
     CDS             complement(1562..3220)
                     /locus_tag="RJ259_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HDV7366647.1"
                     /translation="MKKILILFFSCILCFGAVNVSQIISAEDQGSTTTSIDQNLSSNY
                     DIANKENNLTKIHQILVFGAHLFNGNFKNYNQRVYNPDYKIAVGDQISLKIWGAVEFS
                     QVLVVDSQGNIFIPKVGAVNLLGVKNSALVSVIKARVNKIYKSNVFVYADMNAYQNVS
                     VFVTGSVNAPGLYQGLSSDSVIQYLDKAGGINLEYGSFRDIQILRNNSVIKNIDLYDF
                     LLKGQMDLFPFRSGDVILVGNVQNYAFVNGDVQRPFRFELSNDIKTLADLARVSGAKP
                     IVTNAIVKSYGEDHKLDVSAYNKMQFSKVLLRTGDEVEFHPEYVSENITISVNGEHNG
                     LKTLVVGKGTTLEDISKLIKANPQSNMQALQVFRKSVARTQKELINAQLKELETLALT
                     SGSVTAQGAAIRAQQAKTILEFIQRAKQVEPKGQIVIDNPKSYNSVILEDGDTINVPS
                     KNNLIIVQGEVSLPGAFVYDKGKDLRYYINLAGGYGERADTSKVLVIRSNGKAEKYHS
                     GIDMKPGDSVLVLPKVDSENLQIFSMLTQILYQIAIATNVVLNL"
     gene            complement(3222..4340)
                     /locus_tag="RJ259_000928"
     CDS             complement(3222..4340)
                     /locus_tag="RJ259_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDV7366648.1"
                     /translation="MEENKTLLEKIKDLSIFDSFKIVWFIMIFVVIYYTLIAAPRYVS
                     TMILDVRSTSGESAQISGILSLLSNTSTASEDLNYLKGYIESSDMLKILDEKIKLKSL
                     YQEQHIDLPFKIWDSSSIESYLKYYQARVKVHTDETTKLLKVEVEGFTPKSAHLIAQT
                     IMQESEKFINEISHKAAREQMAFAENEVQKYKERYQKAQNDLIAFQNKYGVFDPLKQA
                     ETKASLVAQIEANLAQKEAKLLTLQSYMNDAAPEVVALKAEIEAIKKQLLREKSKISA
                     NNSSQKLNDLAAKFQDLTIEATFAQKAYEAALKAYESARIEALRKIKQLVIIQSPDIP
                     ESAKYPERIYDILTAFIVLSLIFGIIKFIKMIIEEHKY"
     gene            complement(4340..5002)
                     /locus_tag="RJ259_000929"
     CDS             complement(4340..5002)
                     /locus_tag="RJ259_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7366649.1"
                     /translation="MIKLINLTKSYPLFSGGRHYVFKNFTFEFPENCSIGLMGYNGAG
                     KSTLMRLLSRAELPDSGKIITNKKLSWPLGLNGAFQGSLTARDNAKFVARVYGYKGKE
                     LQEKVKFVEDFAELGKFFDEPMKTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPA
                     FREKSVKLYRERLSKSKVIMVSHNVAEIKEWCDKIIYMKNGQITVYDDVDEGIAVYQG
                     KA"
     gene            complement(4999..5781)
                     /gene="kpsM"
                     /locus_tag="RJ259_000930"
     CDS             complement(4999..5781)
                     /gene="kpsM"
                     /locus_tag="RJ259_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide transporter KpsM"
                     /protein_id="HDV7366650.1"
                     /translation="MLNVIYALFFRELKTRFGKNRYLGYIWVVGEPMSVVLLVTIIGT
                     VIREYHHQIMPEGISIFMFLISGIMPFFMFRSIVTQLMNGIGANLSLFAYKPVKPIHV
                     FIARTLLEFCIYFVIFITVLFFAGWFFRLDVFPVHLLGVLFCIFLLICSAFALGICFA
                     IVWHFVEPLRTLLAYFSIVFYWSSGIIFPTWLTPRPLLDIFYYNPLLHIMELLRFNFF
                     ENYPLQDEYSYFYAIFWILLVLFIGLFIYYYNRQALTAAKKE"
     gene            complement(5853..6260)
                     /locus_tag="RJ259_000931"
     CDS             complement(5853..6260)
                     /locus_tag="RJ259_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366651.1"
                     /translation="MDERILEFIKNEQLLSWAMIDEKGVYTASAFYAFDEKNLAFIIA
                     SHEDTKHIRLASENSSIALNIAKESKIAFLKGVQAKAEFKMASKEQMKIYFSKFPFAK
                     LDKSAKIYALELFWLKFTNNALGLSKKLEFCKK"
     gene            6335..6898
                     /gene="ciaI"
                     /locus_tag="RJ259_000932"
     CDS             6335..6898
                     /gene="ciaI"
                     /locus_tag="RJ259_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular survival protein CiaI"
                     /protein_id="HDV7366652.1"
                     /translation="MQIDASKNQSFSMDYTTKSGKHLALSMYDNQSISYANNEEGKTL
                     NLKRQYGFSFTFEGSKLTQNDLDEIKNAMKEVEPMIKDFLANSKVGELKPKEIIESAM
                     QMANVLPTPNDKNHQNAIMNNFTNKLSDLLKQNQTNDKDINTSMLEDSKKLLDEVLEQ
                     MKKQLEKQQEKAKENQDKTDDSLNLYA"
     gene            6934..7623
                     /gene="dut"
                     /locus_tag="RJ259_000933"
     CDS             6934..7623
                     /gene="dut"
                     /locus_tag="RJ259_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HDV7366653.1"
                     /translation="MTNIEILENMLKLQQKLNDETNGLNWENGYTKEGKLISWRRCIY
                     MECAELIDSFAWKHWKNISNPTNWENVRIEIVDIWHFILSLLLEEYRDKNNKDFKAIA
                     TEVNAVSVFQDFCKEEEYPNEGDIYGILNDIELIIHKCSGFGFNLGELLSTYFTLAIK
                     CGLNLEILYKTYIGKNVLNIFRQNNGYKDGSYKKTWNGKEDNEVLAQILEQELDFDTI
                     YKKLEECYKKA"
     gene            7625..8338
                     /locus_tag="RJ259_000934"
     CDS             7625..8338
                     /locus_tag="RJ259_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HDV7366654.1"
                     /translation="MDILKLAIKDFLSLKFLKFALIPLIFSLILMLFLGVLGFSALLD
                     YFNSLFSVGEDSFWAWFYALHFVQILITIISFLFSGFIVVFASVFLALFITSFLTPFI
                     AKEINQKYYHYDNTNEVSTLKTIFEIFKIFIKFIGILLLCTLALFLPFINIFVYYLAF
                     YYLFHKLLMIDVTSTILDKESFKNFHSDFSPLEFKFSTLCFYLLSSVPLLGLFLQVFF
                     VIFLTHLSYQRILKLKAKA"
     gene            complement(8321..9286)
                     /gene="tilS"
                     /locus_tag="RJ259_000935"
     CDS             complement(8321..9286)
                     /gene="tilS"
                     /locus_tag="RJ259_000935"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HDV7366655.1"
                     /translation="MQIKDEILALLKKGKNLLAFSYGSDSSALFYLLMQEKIDFDLVM
                     INYKTRKNSDLEELKAKELALKFHKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQ
                     DYDHLILAHHLNDQFEWFLMQLSRGAGLAEILGMQECEKRQNYTLLRPLLFISKDEIS
                     SFLKEKDIFYFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKRSFSYLDEDRKKLYD
                     FENIKEIQGLLICPKNESLIARAVKMKGLLLSTAQRKELLKGDCVLGGKIALAYKNEQ
                     AIVFEYETCQKLPKNFKEECRIAKIPRLLRAYLYNHKIDISSLSF"
     gene            complement(9276..10595)
                     /gene="rimO"
                     /locus_tag="RJ259_000936"
     CDS             complement(9276..10595)
                     /gene="rimO"
                     /locus_tag="RJ259_000936"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HDV7366656.1"
                     /translation="MSKLYLMSLGCNKNLVDSEIMLGHLSAYELCDEPSKADVLIVNT
                     CGFIDSAKKESINAILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDY
                     ERIDEMILKKTNLFSNSTYLQSENFKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG
                     KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIGEVEKIKGI
                     RAARILYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEM
                     LNLMKSAPNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFD
                     MEQVSFKVINKRLKIIEKIVNEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRW
                     DREIDGEILINESECGNLEMGQIYECEILQNLDKKLLAKALRKVDAN"
     gene            10669..11766
                     /gene="prfB"
                     /locus_tag="RJ259_000937"
     CDS             10669..11766
                     /gene="prfB"
                     /locus_tag="RJ259_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HDV7366657.1"
                     /translation="MDNYEFSELLKTLKNKVGNIASIIKPENIQTRLKEIEELENSPS
                     FWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLANSENDTETLEALFNDA
                     PKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASILYRMYLRFCEREGF
                     KVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSS
                     VMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
                     RSQHKNKATAFKMLKSRLYELELMKQQDSANTGEKSEIGWGHQIRSYVLFPYQQVKDN
                     RSGEAFSQVDNILDGDIKKMIEGVLIALKAE"
     gene            complement(11924..12238)
                     /locus_tag="RJ259_000938"
     CDS             complement(11924..12238)
                     /locus_tag="RJ259_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366658.1"
                     /translation="MKKILTSALALGAMTLIVDCGDGDLVELKNNGNDQAMFDLGNQE
                     IMKKYPNYKLYDYTSVRTISDINNPEGKIKEMKRDLEIDKTPYSNYVFLLNPNDKKTI
                     KL"
     gene            complement(12360..13478)
                     /gene="truD"
                     /locus_tag="RJ259_000939"
     CDS             complement(12360..13478)
                     /gene="truD"
                     /locus_tag="RJ259_000939"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HDV7366659.1"
                     /translation="MNLEEENTIFKPLYSLKHSPINAYFSKNSDDFVVRERPLYEFSG
                     KGEHLILHINKKDLTTNEALKILSEASGVKIRDFGYAGLKDKQGSTFQYLSMPKKFES
                     FLSNFSHPKLKILEIFTHENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALMNLDKQG
                     FANYFGYQRFGKFGDNYKEGLEILRGKKMKNVKMKEFLISAFQSELFNRYLSKRVELS
                     HFANDFSEKELIQIYKISKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAEL
                     GRFKARDISAMGLLIGAKAYETGEGLALNLENEIFKDTLEFKAKMQGSRRFMWGYLEE
                     LKWRYDEEKAHFCIEFFLQKGSYATVVLEEILHKNLFE"
     gene            complement(13447..14268)
                     /locus_tag="RJ259_000940"
     CDS             complement(13447..14268)
                     /locus_tag="RJ259_000940"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HDV7366660.1"
                     /translation="MNKEDFIIKAFLNKKNGDDGAIIDDWCFSKDLFFENVHFKREWF
                     SLEQIATKAMLVNISDAISMNAVPKYALLGLALPKNLSENEIKALQKGFLKTARKFNI
                     KIIGGDTISNDKIDISLTIISKINDKAVFRKGLKKGHLLAYTGKLGRSLKGLEILQNG
                     GTLKPNHVFIKPKLRASFFYEIAPLISCAMDISDGLSKDLSRLLALNKCGISWFKKLD
                     DYALYSGEEYEILFAFDEKERQNIEIIAKKHGVKLNIFGKAVKGKYEFRGREHHF"
BASE COUNT         4930 a         2572 c         1820 g         4977 t
ORIGIN      
        1 agctttttta tactcagcat aaaaaaaata aaattcagcc tgataataaa aaaccgtctt
       61 catgtttact ttggataaat aactgcacaa ttttaaaaaa atataatgtc tacttttttt
      121 ctgcattaaa tatatcaaaa tcatatgcaa cagaatcaaa tgcaaatacc cctttttgct
      181 ttcacgaaag cttttgcgaa atataccttt taaattcata atttaattct ctcaataatt
      241 tctgtcgttg aaatacttgg ggttctttca aaataaatca catcacaaat atcattaaaa
      301 caatcaaatt tacctttcca atcatctccc ataactaaaa tatttgcttg gtattttaaa
      361 agataatctc tttttaattc caatgcttct tctaaaaata cacaagacac gcattttaat
      421 gaagatatta tatttaatct ctcttgctcg ctgtatatag gataacgatg ctttttagca
      481 aaatttaaag aatctgatga tacaccaaca attaatttat ctccaagaga tgcggctctt
      541 tctagaatcc ttaaatgacc ataatgaaac aaatcaaaag taccaaaagt tattacattt
      601 ttcactatac cctccctata gcataaagct ggataatccc cataaccctt tcttctttcc
      661 ctactataat ttctttgatt ttatgtttta gcatgatctc ctctgcttca cttgccatag
      721 catcagcatc gactacttta ggatttgtac tcatgatttc tttggctcta aaatcaaatc
      781 ttggtttatc gcttgtcttt aaagcacgac gcaaatcccc gtcagtgata atacccacta
      841 atttttcatt ttcaagtacc acacaaagcc ctagccttcc actagtcatc acatcaacaa
      901 gatcgttaaa ttcagtatca ggatgcacta taggaaggtt acttgaaacc ataagatctt
      961 ttaccttggt taaaagctta cgccccaaac tcccccctgg atgaaaaagg gcaaaatcat
     1021 caggcttgaa atttcttacc ttcatcaaag cagcagctaa agcatccccc ataaccaaag
     1081 ttgcggttgt cgaagacata ggagcaagct gcaaaggaca agcttccttt tccacagcta
     1141 tatttaaaaa tatatcgcct tgctttacaa gggtggaatt ttttttacca cacattacta
     1201 taagtggaat tttacgcttt tttatagctg gaatgatttt taaaatttct tcagtttccc
     1261 ctgaatttga aatagcaatt aaaacatctt cggaagttaa cattccaaga tctccatgca
     1321 aagcctctcc tggatggatg aaaaagcttg gcgttcctgt acttgctaaa gtagctgcta
     1381 tcttagcacc tatatgaccc gatttaccca ttccactgac tatgcaacgc cctttggtat
     1441 ttagcatcaa attcacagct tgattaaaat tttcatctaa atttttagcc aaatccaaaa
     1501 tagcttgcgc ttctttttca aagacttctt tggctatttc aagagtattc atttttaaac
     1561 cttaaagatt aagcacaaca ttggttgcaa tagcaatttg ataaagaatt tgagttaaca
     1621 ttgaaaaaat ttgcaaattc tcactatcta cttttggcaa taccaacaca gaatcgcctg
     1681 gtttcatatc tataccacta tgatattttt cagcttttcc attgcttcgt atcaccaaaa
     1741 cttttgaagt atccgctctt tctccataac ctcctgcaag attgatataa tatcttaaat
     1801 ctttgccctt atcatacaca aaagctccag gtaaagaaac ctcaccttga actatgatga
     1861 gattattctt acttggtaca ttaatagtat caccatcttc taaaataacc gaattataag
     1921 actttggatt atcaatgaca atttgaccct taggctctac ttgcttagct ctttggataa
     1981 attctaaaat cgtttttgct tgttgagctc ttatagctgc accttgagct gtaacagaac
     2041 cactagttaa agctagagtt tcaagctctt taagctgagc attgataagt tctttttgag
     2101 ttctagctac actttttcta aacacttgta aagcttgcat gtttgattgt ggattggctt
     2161 taattaattt agaaatatct tctaaagtcg ttcctttacc cacaactaaa gtttttaaac
     2221 cattatgctc gccatttaca cttatagtta tattttcaga aacatactca gggtgaaatt
     2281 ctacctcatc tcccgttcta agtaaaactt ttgaaaattg cattttatta taagcactga
     2341 catcaagttt atgatcttca ccataacttt ttacgatagc attagtcacg ataggtttag
     2401 cacctgatac tctagctaag tcagctaaag ttttaatatc atttgaaagt tcaaaacgaa
     2461 aaggtctttg cacatcaccg ttaacaaaag cgtaattttg aacatttcct actaaaataa
     2521 catctccgct tctaaaagga aaaagatcca tttgcccctt tagtaaaaaa tcatataaat
     2581 caatattttt tatcacgctg ttattacgca aaatttgaat atctctaaaa cttccatatt
     2641 ctaaatttat accccctgct ttatcaagat actggatcac tgaatccgaa ctaagtcctt
     2701 gataaagtcc tggagcatta acacttcctg ttacaaaaac actgacattt tgataagcat
     2761 tcatatctgc ataaacaaaa acattgcttt tatagatttt attaacacgt gcttttataa
     2821 cacttacaag ggcactattt ttcacaccta gtaaatttac agctcctact ttagggataa
     2881 aaatatttcc ttgagaatcc accactaaaa cttgcgaaaa ctcaacagct ccccaaattt
     2941 taagactgat ttgatcacca actgcgatct tataatctgg gttataaact ctttgattgt
     3001 aatttttaaa atttccatta aaaagatgag cgccaaatac taaaatttga tgaatttttg
     3061 taagattatt ttctttattt gctatatcat aatttgagct taaattttga tctatgctag
     3121 ttgtagtaga accttgatcc tctgctgaaa tgatttgtga aacattcaca gctccaaaac
     3181 ataaaataca actaaaaaat aaaattaata tttttttcat tttaatactt atgctcctct
     3241 attatcattt taataaattt aataatccca aaaatcaaag ataatacaat aaatgctgtt
     3301 aaaatatcat aaattctttc aggatatttt gcgctttctg gaatatctgg actttggatg
     3361 atgacaagtt gttttatttt tcttaatgct tctattctag cactttcata agcttttaaa
     3421 gctgcttcat aagctttttg cgcaaaagta gcttctatag ttaaatcctg aaatttagca
     3481 gccaaatcat taagcttttg agaagaattg ttagctgaaa ttttagattt ttcccttaaa
     3541 agctgttttt taattgcttc aatttctgct ttaagtgcta ctacttcagg tgctgcatca
     3601 ttcatataac tttgtaaagt taaaagttta gcttcttttt gagctagatt agcctcaatt
     3661 tgtgcaacca aacttgcttt agtttcagct tgctttaaag ggtcaaaaac tccatattta
     3721 ttttgaaaag caatcaaatc attttgtgct ttttgatatc gttctttgta tttttgtact
     3781 tcattttcag caaaagccat ttgctctcta gctgctttat gagagatttc gttgataaac
     3841 ttttcgcttt cttgcataat agtttgagca atcaaatgag ctgatttagg tgtaaaaccc
     3901 tctacttcaa cttttaaaag tttagtggtt tcatccgtat gaaccttaac tcttgcttgg
     3961 tagtatttaa gataagattc tatcgagctt gaatcccaaa ttttaaaagg taaatctata
     4021 tgttgttctt gataaagact tttaagttta attttctcat ccaaaatctt taacatatca
     4081 cttgattcta tgtaaccttt tagataattt aaatcttcgc ttgctgtaga agtattacta
     4141 agcaaagaca aaattccact tatttgagca ctttctccac ttgttgatct aacatctaaa
     4201 atcatcgtgc ttacatatct tggtgctgca atcaatgtat aataaatcac aacaaaaatc
     4261 attataaacc aaacaatttt aaaagaatca aatatactta aatctttaat tttttctaat
     4321 aaagttttat tttcttccat taagcttttc cttgatacac agctattcct tcatctacat
     4381 catcataaac cgtaatttgt ccatttttca tataaattat tttatcacac cattctttaa
     4441 tttcagctac attatgagac accataatca cttttgattt gcttaatctt tccctatata
     4501 attttacgct tttttcccta aaagcaggat ctccaacagc ccctgcttca tcaattaaat
     4561 aataatcaaa atcaaaagcc atactaagtc caaaagctat cctagcactc attcccgaag
     4621 aataagtctt cataggctca tcaaaaaatt tcccaagttc tgcaaaatct tctacgaatt
     4681 ttactttttc ttgaagttct ttacccttat atccatacac tctagctaca aatttagcat
     4741 tatctctagc agttaaagaa ccttgaaaag ctccgtttaa acccaaaggc caggataatt
     4801 ttttattagt aattatcttg ccactatcag gaagctctgc cctgcttaga agtctcatga
     4861 gagtggactt gcctgcgcca ttatatccca ttaaacctat gctacaattt tcaggaaact
     4921 caaaagtaaa attcttaaaa acataatgtc ttccaccact aaataaagga taagatttag
     4981 ttagattaat tagctttatc attctttttt tgccgccgtt agagcttgtc tattatagta
     5041 gtaaataaaa agccctataa ataaaacaag taaaatccaa aatatagcat aaaaataact
     5101 atattcatct tgcaaaggat aattttcaaa aaaattaaat cttaaaagct ccattatgtg
     5161 aagcaaagga ttgtaataaa atatatcaag taaaggacga ggagttaacc aggtgggaaa
     5221 tataatccca gaactccaat aaaatactat actaaaataa gctaataaag ttcttaaagg
     5281 ttctacaaag tgccaaacaa tagcaaaaca aatccctaaa gcaaaagctg agcatatgag
     5341 taaaaaaata caaaataaaa ctccaagtaa atgaacagga aatacatcga gtctaaagaa
     5401 ccaccctgca aaaaaaagca cagtgataaa aatcacaaaa taaatacaaa attcaagcaa
     5461 agttctagca ataaatacat gtataggttt tacaggttta taggcaaaca aagataaatt
     5521 tgcccctatt ccattcataa gctgagttac tatacttcta aacataaaaa aaggcataat
     5581 gcctgaaatc aaaaacataa aaatagaaat tccttcaggc ataatttgat gatgatattc
     5641 cctaataaca gttcctataa tagtcaccaa aagcacaaca ctcataggct ctccaactac
     5701 ccatatatat ccaagatacc tattttttcc aaatctagtt tttaactctc taaaaaataa
     5761 agcataaatt acatttaaca tttattttct atacctaaca atttacataa accataatca
     5821 taactcattt ttttaaacaa aatcataaaa atttattttt tacaaaactc aagcttttta
     5881 ctaagtccta aagcattgtt agtaaattta agccaaaaaa gctctaaggc ataaattttt
     5941 gcacttttat caagtttagc aaagggaaat ttagaaaaat aaattttcat ttgctccttg
     6001 cttgccattt taaactcggc cttagcttgc acacctttta aaaaggctat tttactttct
     6061 ttggctatat taagtgctat acttgaattt tcactggcta atcttatatg cttagtatct
     6121 tcatgagaag cgataataaa agctaaattc ttttcatcaa aagcataaaa agcactagcc
     6181 gtataaacac ctttttcatc aatcatagcc caagataaaa gctgctcatt ttttataaat
     6241 tctaaaattc tttcatccat attataaaaa ttatactaaa atatttttaa aaataaccga
     6301 tttttgattt aaactataaa tataagggga agaaatgcaa attgatgcta gtaaaaacca
     6361 aagtttttcg atggattata caacaaaaag tggcaaacac ttagccttat ctatgtatga
     6421 caatcaaagc ataagttatg caaataatga agaaggtaaa actcttaatc ttaagcgtca
     6481 gtatggtttt agctttactt ttgaaggctc taaactcaca caaaatgatc ttgatgagat
     6541 taaaaatgct atgaaagaag ttgaacctat gatcaaagat tttttagcaa attctaaagt
     6601 tggagagtta aagccaaagg aaattatcga atcagctatg caaatggcaa atgttctacc
     6661 aactccaaat gataaaaacc atcaaaatgc tattatgaat aattttacaa ataaactcag
     6721 tgatttgcta aaacaaaatc aaacaaatga taaagatatc aatacttcta tgcttgaaga
     6781 tagcaaaaaa cttcttgatg aagttttaga acaaatgaaa aaacaacttg aaaaacaaca
     6841 agaaaaagcc aaggaaaatc aagataagac agatgatagt ttaaatcttt acgcttaaat
     6901 catataatat taaaaattat caaggagttt taaatgacaa atatcgaaat tttagaaaat
     6961 atgctcaaac tccaacaaaa actcaacgat gaaacaaacg gcttaaattg ggaaaatggc
     7021 tacaccaaag aaggaaaact gatcagttgg agacgctgta tttatatgga atgtgcagaa
     7081 cttatagact cttttgcatg gaaacattgg aaaaacattt caaatccgac aaattgggaa
     7141 aatgtgcgta tagagattgt cgatatttgg cattttattt taagtctttt acttgaagag
     7201 tatcgcgata aaaacaataa agatttcaaa gctatagcca cagaagttaa tgctgtaagc
     7261 gtgtttcaag atttttgcaa agaagaagaa taccctaatg agggtgatat ttatggcatt
     7321 ttaaatgata tagagcttat tatccataaa tgcagtggtt ttggatttaa tcttggagaa
     7381 ttactttcaa cctattttac tctagctatt aaatgtgggc taaatcttga aattctttat
     7441 aagacctaca taggtaaaaa tgttttaaat atttttagac aaaacaatgg ttacaaagat
     7501 ggtagctata aaaaaacttg gaatggcaaa gaagacaatg aagttttagc tcaaatttta
     7561 gaacaagagc ttgattttga tactatttat aaaaaactag aagaatgcta caaaaaggca
     7621 taatttggat attttaaaac ttgcaatcaa agatttttta agtcttaaat ttttaaaatt
     7681 tgccttaatt cctttgattt ttagccttat actgatgctt tttttaggag tacttggctt
     7741 ttcggccttg cttgattatt ttaattcttt atttagcgtt ggagaagatt cgttttgggc
     7801 gtggttttat gctcttcatt ttgtacaaat tttaatcacc atcataagtt ttttattttc
     7861 aggttttatt gttgtttttg cttcggtttt tttagccctt tttatcactt cttttcttac
     7921 tccttttatc gctaaagaaa tcaaccaaaa atattaccat tatgataata caaacgaagt
     7981 ttcaacctta aaaactatct ttgaaatttt taaaatattt ataaaattta tagggatttt
     8041 attgctttgc accttggctt tatttttacc ttttataaat atttttgtat attatcttgc
     8101 tttttattat ctctttcaca aacttttaat gattgatgtt acaagcacga ttttagacaa
     8161 agaaagtttt aaaaattttc attctgattt ttcgccttta gagtttaaat ttagcactct
     8221 ttgtttttat ctactctcat cagtaccact tttaggactt tttttgcaag tattttttgt
     8281 gatttttctc acacatttaa gctatcaaag aattttaaaa ctaaaagcta aggcttgaaa
     8341 tatcgatttt gtgattgtat aaataagctc ttaaaagtct tggaatttta gctattctac
     8401 actcttcttt gaaattttta ggtaattttt gacaagtttc atactcaaaa acaatagctt
     8461 gttcgttttt atatgcaagt gctattttac cacctaaaac acaatcaccc tttaaaagct
     8521 cttttctttg tgccgtgctt aaaagcaaac ctttcatttt caccgctcta gcaatcaagc
     8581 tttcattttt agggcaaata agaagtcctt gaatttcttt gatattttca aaatcataaa
     8641 gttttttcct gtcttcatca agataagaaa aacttctttt taaaccctga tgaaattcac
     8701 tcacaaaggc attagagaaa ttttttctta tataatttct aaaatatttt tcattttcat
     8761 tactttcatc atggaaataa aaaatatctt tttcttttaa aaaagatgaa atttcatctt
     8821 tacttataaa gagtaaaggg cgtaaaagtg tataattttg gcgtttttca cactcttgca
     8881 tacctaaaat ttcagccaaa cctgctcctc gtgaaagttg catcaaaaac cattcaaatt
     8941 gatcgtttaa atgatgggct aagataagat gatcataatc ttgctcaaga caaatttttt
     9001 caaaaaaatc atagcgaaaa tctctggctt ttttttcaaa attactttga aatttaggag
     9061 cgtgttttat gaaaattttt ttatgaaatt ttaaagcaag ttctttggct tttaactctt
     9121 ctaaatcact attttttctt gttttgtaat ttatcatcac aagatcaaag tcgatctttt
     9181 cttgcattaa aagataaaaa agcgcactag aatcacttcc ataagaaaaa gcgagtaaat
     9241 ttttaccctt ttttaaaagg gctaaaattt catctttaat ttgcatctac ttttcttaaa
     9301 gccttagcaa ggagcttttt atcaaggttt tgtaaaattt cacattcata aatttgcccc
     9361 atttctaaat ttccacattc gctttcattg ataagaattt ccccatcaat ctctctatcc
     9421 catcttaaat ctttagctgc gatgaaaaac tctccctcac tactttctcc tgtgcaaact
     9481 actaaacgct tttgccctac ttctttttca aaactttttt ctatcacttc attaacaatt
     9541 ttttctatga ttttaagcct tttattgatc actttaaaag acacttgctc catatcaaaa
     9601 gcggctgtat cttcttcctt agaatacgca aaaacactca ctctatcaaa accaaagtct
     9661 ttaacaaact cacaaagctc ttcaaaatct gcctcacttt cacctggatg ccctacgata
     9721 aagcccgtgc gtaaaaagct atttggcgca cttttcatta aatttagcat ttctttaagt
     9781 cttgtgctat ttgccccacg cttcatgatt ttaagcatat tatcacttat gtgctgtaaa
     9841 ggcatatcaa aataatttac aaaaatttca gaagctataa tgcgtttgat caaagcttca
     9901 ctcgcactcg taggataaag atataaaatt ctagccgctc ttatgccttt gattttttcc
     9961 acctcaccga ttaagcgtat aagcccatct ttttcaccct tatcaaacaa ataagaactc
    10021 gtatcttgtg caataaaaga aaagtcctta taacctctag ctaccaaatc tttaagctca
    10081 gctataatgc tacttatctc gcgagatttt aacttgcctt taaaacttgg gatagcacaa
    10141 aaagagcatt tttgattaca accttcagcg atttttataa aagcatggga atttgaacct
    10201 gtgataatac gtttgaaatt ttcactctgt aaataagtcg aatttgaaaa taaatttgtt
    10261 tttttaagta tcatttcatc gattctttca taatcaccca cacctgtgaa aagatcaacc
    10321 tcaggaagtt ctttcataag ttcttcgcgg taacgctgca tcaaacaacc cgtaaccacc
    10381 aaaagagaat ctttttttct ttgttcgtgc aaatccaaaa tcgcattaat actttctttt
    10441 tttgcactat cgataaaacc acaagtattt acgattaaaa catcagcttt gcttggttca
    10501 tcgcaaagtt cataagcact aaggtgccct agcatgatct cactatcgac taaattttta
    10561 ttacaaccta aagacataag ataaagtttt gacatttttt tcctatatta aagttttctt
    10621 ttgatataat ttttgacttt aaaaatataa ttatagcaaa gaaattttat ggataattac
    10681 gaatttagcg aacttttaaa aactttaaaa aacaaagtcg gcaacatagc ctccatcatc
    10741 aagcctgaaa atatccaaac aaggcttaaa gaaatcgaag agcttgaaaa ttctccttct
    10801 ttttggagtg atgttaaaca agcaggaatc ataggtaaag aaaaaactaa aatcaccaat
    10861 ctacttaaaa actatgaaaa tgcttttaat gctctaaatg acgcaagcga acttttcgat
    10921 ctggccaata gcgaaaacga tacagaaaca cttgaagctt tatttaatga cgcaccaaaa
    10981 cttgaagata ccatcacaag tcttgaaatt tccatgcttt taagcgggga aaatgatggt
    11041 aaaaatgcca ttgtttccat tcacccaggt gcaggtggaa cggaaagtaa tgactgggca
    11101 agcatacttt atagaatgta tttaagattt tgtgaaagag aaggttttaa agtcgaaact
    11161 ttagactttc aagaaggcga agaagcagga cttaaagatg tgagcttttt agttaaagga
    11221 gaaaatgctt atggttattt aaaagctgaa aatggtatcc atcgtttggt aagaacttct
    11281 ccttttgata gtgcaggacg ccgtcataca agcttttcaa gtgttatggt aagccctgaa
    11341 cttgatgatg atatagaaat tgaaatcgaa gaaaaagaca taagaataga ttattacaga
    11401 gcaagcggtg caggcggaca acatgtcaat aaaacagaat cggctgtgag aatcacgcat
    11461 tttccaaccg gcatagtcgt acaatgccaa aatgacagaa gtcagcacaa aaacaaagcc
    11521 accgctttta aaatgctaaa atctcgcctt tatgaacttg aactcatgaa acaacaagat
    11581 agtgctaata ctggagaaaa aagcgagata ggttgggggc atcaaatccg ttcttatgtg
    11641 cttttccctt atcagcaagt caaagacaat cgcagcggag aagctttttc tcaagtggat
    11701 aatatccttg atggggatat caaaaaaatg atagaaggcg ttttgattgc tttaaaagcg
    11761 gagtaacagg cttaaaaata agtaatttct gcaaaatgtc ggtataaaaa aattagaaag
    11821 atagcgggat tttcccgctt gttttattat cttgcataaa acctaagagc atcattcaca
    11881 gaataataaa ctcttttctt aaaatcttta tcgcaataaa cactcacaac tttatagtct
    11941 ttttatcgtt tggatttaat aagaaaacat agtttgagta tggagtttta tctatttcta
    12001 aatcacgctt catttcttta attttgcctt ctggattgtt aatatcacta attgttctga
    12061 ctgaagtata atcataaagt ttataatttg gatatttttt cataatctct tgattaccta
    12121 aatcaaacat agcttgatcg ttgccattgt tttttaactc gactaaatcg ccatcgccac
    12181 aatctacaat caaagtcata gctcctaaag ccaaagcact tgttaaaatc tttttcatta
    12241 tttttgctcc tagttttaaa attaaattaa tataactata cctaaattta aaatttaaat
    12301 atcatttttg caataaattc taaagtaaaa atcacgtaaa aatttaactc ataattattt
    12361 cattcaaaca aatttttatg caaaatttct tctaaaacca cagtagcata agagcctttt
    12421 tgcaagaaaa actctataca aaaatgagct ttttcttcat cataacgcca ttttaactct
    12481 tctaaatatc cccacataaa gcgtcttgaa ccttgcattt tagccttaaa ctccaaagta
    12541 tctttaaaaa tttcattttc taaatttaag gccaaacctt ctcctgtttc ataagcctta
    12601 gcaccgatta aaagccccat ggcgcttata tctcttgcct taaaacgccc aagctcagca
    12661 cttaaatcct cgcataaaaa acactttcca aaaggataat gccctaaaac ctcacctttt
    12721 aaaagcttaa aaaattgttc ttgtttttta agttccttag cttcttcttt agaaatttta
    12781 taaatttgga tcaattcttt ttcgctaaaa tcatttgcaa aatgtgataa ctccactctt
    12841 ttactcaaat agcgattaaa aagctcactt tgaaaagctg aaattaaaaa ctctttcatt
    12901 tttacatttt tcatcttttt gccacgcaaa atttcaagcc cttctttgta attatcccca
    12961 aattttccaa aacgctgata gccaaaataa ttcgcaaaac cttgtttatc caaattcatc
    13021 aaagcttgtt ctagttttaa agcatcgctt ggtaaaactt tttttaagcg tatgaaaaaa
    13081 gaatttcctt ttaaatggcc tattcttagc ttgttctcat gggtaaaaat ttctaaaatt
    13141 ttaagtttag gatgagaaaa atttgacaaa aaactctcaa attttttagg catagaaagg
    13201 tattgaaagg ttgatccttg cttgtcttta agccctgcat aaccaaaatc tcttatttta
    13261 accccgcttg cttcacttaa aatttttaaa gcttcatttg tggttaaatc ttttttattg
    13321 atatgcaaaa taagatgctc acccttaccg ctaaattcat acaaaggcct ttcacgcact
    13381 acaaaatcat cgctattttt actaaaatac gcattaatag gactgtgttt taaactatac
    13441 aaaggcttaa aaatggtgtt ctcttcctct aaattcatat tttcctttca ctgcttttcc
    13501 aaagatattt aatttcacgc cgtgtttttt ggctattatt tctatatttt gccgttcttt
    13561 ttcatcaaaa gcaaacaaaa tttcatattc ttctccgcta taaagcgcat aatcatcaag
    13621 ttttttaaac caagaaatac cgcatttatt taaagctaaa agccttgata aatccttgct
    13681 taaaccatct gaaatatcca tagcacaaga aattaaaggt gcgatttcat aaaaaaaact
    13741 agctcttaat tttggcttta taaatacatg gtttggtttt aaagtgcccc cattttgtaa
    13801 aatttcaagc ccttttaaac ttcgtcctaa ttttcccgta taagcaagta aatgcccctt
    13861 ttttaaacct tttctaaaaa cagctttatc gttaatcttt gaaatgatag taagactaat
    13921 gtctatttta tcattgctta tagtatcacc gcctatgatt tttatattaa atttcctagc
    13981 tgtttttaaa aaaccttttt gcaaggcttt gatctcattt tcgcttaaat tttttggtaa
    14041 agcaagtcct aaaagtgcgt attttggtac agcattcatt gaaatagcat ctgagatatt
    14101 aacaagcatt gcttttgtag caatttgctc taagctaaac cactctcttt taaaatgcac
    14161 attttcaaaa aacaaatcct tactaaaaca ccaatcatca ataatagctc catcatcacc
    14221 atttttttta tttaaaaaag ctttgataat aaaatcttct ttgttcataa tgcgtgattt
    14281 tataaaattt ccttttaaa
//
LOCUS       DAPIWJ010000039        14155 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.039, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000039 DAPIWJ010000000
VERSION     DAPIWJ010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14155)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14155)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14155
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.039"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..363
                     /locus_tag="RJ259_000941"
     CDS             <1..363
                     /locus_tag="RJ259_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366661.1"
                     /translation="FFNFFMFCSLLAFVFNFVLKIKIKIIVLFLCFIMVLGNYFLKEQ
                     RNNALKSEQEQILLWMNNFNFLKDNNLSLIQKEKDLFEKDLKDLREIFKKNAFEIGIW
                     WFSKEKEDLEKRINESLK"
     gene            360..1121
                     /locus_tag="RJ259_000942"
     CDS             360..1121
                     /locus_tag="RJ259_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HDV7366662.1"
                     /translation="MRFDFFVSKRLNISRNKALELIENEEILLNGKSFKASFDVKNFL
                     ENLKKTQDLNPEDILLANELKLDLLSEIYVSRAALKLKKFLEENDIEIKHKNCLDIGS
                     STGGFVQILLENQALKITALDVGSNQLHPSLRVNEKIILHENTDLRAFKSEEKFELVT
                     CDVSFISLINLLYYIDNLALKEIILLFKPQFEVGKNIKRDKKGVLKDDKAILKARMDF
                     EKACAKLGWLLKNTQKSSIKGKEGNVEYFYYYIKN"
     gene            1087..1941
                     /locus_tag="RJ259_000943"
     CDS             1087..1941
                     /locus_tag="RJ259_000943"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HDV7366663.1"
                     /translation="MLNIFTTISKINITSLAIGCFDGMHLGHLKLVKCLDENGALLVI
                     NKFKGQFLCSNRQKEEISGKKVIEVDFESIKSLDGRDFLSFLKKEFVNLKFIVVGYDF
                     SFGKNRAYNAKDIESLSGIKTIIVDEFSIDGIGVHASLIKDFLSKANLQKAKEFLGRD
                     YSIKGKMIKGQGLGSKELFATINLDCEGYFLPQNGVYVTLLKSQRKTYKSVSFLGVRS
                     SDENFAIESHILEELGENFTQGEFFELEFISFLRENQKFQDLKKLKNQIAKDIEQARE
                     LLRKNDER"
     gene            1928..2638
                     /gene="cmoA"
                     /locus_tag="RJ259_000944"
     CDS             1928..2638
                     /gene="cmoA"
                     /locus_tag="RJ259_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HDV7366664.1"
                     /translation="MMKDELFKQSPKKQFEFDKSVASVFDDMINRSVPFYRENLELCG
                     NLLAKILPTNASVCDLGCSSANFLIFLANLRKDFKLFGVDNSASMLEVAKSKAKAYGL
                     DISFFEANLCEFDFFTCDVFVANYTMQFIRPPKRQELLDQIYKNLNSKGILIMSEKIL
                     YEDAFLSKNIIELYADYKEKQGYSKFEIAAKREALENVLIPYSQKENLNMLEKAGFKK
                     IESIFKWANFETFIAFKD"
     gene            complement(2628..2849)
                     /locus_tag="RJ259_000945"
     CDS             complement(2628..2849)
                     /locus_tag="RJ259_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HDV7366665.1"
                     /translation="MTMKITLFLSLIGIFFAACEQTKSVEYYQNHPEEAKKRSLECRH
                     KAIISQDCVNAYKIGFPKDEWEDENISNP"
     gene            complement(2846..3280)
                     /locus_tag="RJ259_000946"
     CDS             complement(2846..3280)
                     /locus_tag="RJ259_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HDV7366666.1"
                     /translation="MRRLSILLAILIVINITACDSKTENYYKNLPSEAKEKAKECKES
                     GTLSEDCINALKVGVKPTNEEGKYSPNTPKKSDNQILEALKQNDLKKEKTTKDINQSS
                     ENNESIIIPPIAETPSEIYPSKTTENNQSSIFSDDVNMTQEK"
     gene            complement(3338..3970)
                     /locus_tag="RJ259_000947"
     CDS             complement(3338..3970)
                     /locus_tag="RJ259_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HDV7366667.1"
                     /translation="MEINALTITTLYIIGISAEGMTGALAAGRHKMDLFGVIFIALVT
                     AIGGGSIRDVLLGHYPLTWVKHPEYIILICFCALVATKIPRVVTKLETLFLTLDAIGL
                     VVFSILGAQIAIDQNHGFIIAVAAAVITGVFGGILRDILCMRIPLVFQKEIYAGIAII
                     AGAIYYSLIIWLELNALVCTLLTLFIGVFARLLAIKYQWSLPIFSYNEEK"
     gene            complement(3981..4631)
                     /locus_tag="RJ259_000948"
     CDS             complement(3981..4631)
                     /locus_tag="RJ259_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HDV7366668.1"
                     /translation="MKIFIFLLAISLNIFALESYKPSADFSSYFNNINCSQILDKFFY
                     LNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFEDDTNIPKKYRTTWSDYKNSGYTR
                     GHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
                     LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF"
     gene            complement(4628..5254)
                     /gene="nth"
                     /locus_tag="RJ259_000949"
     CDS             complement(4628..5254)
                     /gene="nth"
                     /locus_tag="RJ259_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HDV7366669.1"
                     /translation="MKRNLEIKELFLKHFDKPVTELKFSNLYELLVCVMLSAQCTDKR
                     VNLITPDLFKAYPDIKSLANANLSSLKTYIQTCSFFNNKAQNLIKMAKAVCENFDGEI
                     PLDEQNLKSLAGVGQKTAHVVLIEWCGANFMAVDTHVFRVSHRLGLSKAKTPEATEED
                     LTGIFKDNLNYLHQAMVLFGRYTCKAKKPLCKECFLNHLCKSKDKELK"
     gene            5335..6156
                     /gene="peb4"
                     /locus_tag="RJ259_000950"
     CDS             5335..6156
                     /gene="peb4"
                     /locus_tag="RJ259_000950"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PEB4"
                     /protein_id="HDV7366670.1"
                     /translation="MKKFSLVAATLIAGVVLNVNAATVATVNGKSISDTEVSEFFAPM
                     LRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYTKELDRAKDAILVNVY
                     QEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGK
                     ELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTN
                     FGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEYK"
     gene            6156..7220
                     /gene="fbaA"
                     /locus_tag="RJ259_000951"
     CDS             6156..7220
                     /gene="fbaA"
                     /locus_tag="RJ259_000951"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HDV7366671.1"
                     /translation="MGVLDIVKAGVISGDELNKIYDYAKAEGFAIPAVNVVGTDSINA
                     VLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILH
                     TDHAARKLLPWIDGLIEANAQYKKTHGQALFSSHMLDLSEESLEENLSTCEVYLQKLD
                     ALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFG
                     NVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGSGSELKDIKNAVSY
                     GVIKMNIDTDTQWAFWDGVREYELKNRAYLQGQIGNPEGDDKPNKKYYDPRVWLRSGE
                     ESMIKRLEIAFEDLNCINKN"
     gene            7315..8757
                     /locus_tag="RJ259_000952"
     CDS             7315..8757
                     /locus_tag="RJ259_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HDV7366672.1"
                     /translation="MDIKSDEISELVLPEGKDARGSLVYFKIIFIPAFLYILILLGYF
                     NVIDFKVELHTVIMTGVIFFTALIFARHSAEYAYSIFEQQKDEFKQALKRHIMRHFLA
                     IGKDTKSNANFDDFAYTYIKGARNENFASIGSAIFPMMGILGTFISIAFSMPNFSSSD
                     TAALEQEIADLLSGVGTAFYVSIYGIFLALWWMFFEKYGKSKIDRLLNRQKNATSGFF
                     WTKEELDQRYLTESLQHFEKIGAIFKQVSNDDFFAELDHAIDRKFGIFQDMLNVEEKA
                     IRLSSEHIKQTMGELSKAQRDQRDLGKLYSEMLNGIGLLNQNLKEINTRMSEQYNRLL
                     DISSDKIHHLDKTLSAFDEKIERFGKNFELYEKAMLESQEKVFEGFKASLFEGMHKFK
                     EVYEEEKSIDAKIKMMDELKKEMKALDEETSQMMSKLSGDENQNKENETKQIEDFSES
                     KTEENQDEIQAEISKQESNDELKNEDKENK"
     gene            8754..9707
                     /locus_tag="RJ259_000953"
     CDS             8754..9707
                     /locus_tag="RJ259_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDV7366673.1"
                     /translation="MKNESKEDSNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDL
                     KEIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN
                     YKQLSKDLNSTLDNKDKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGLIRENLS
                     KELQSKLDNNITIDEKIGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDP
                     KIFSNIENIIIEGHTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGRS
                     FSDPVFVNGVEDKDKSRRIEIKFSIKNDNALKDVEKFFEFH"
     gene            9694..10569
                     /locus_tag="RJ259_000954"
     CDS             9694..10569
                     /locus_tag="RJ259_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate
                     deaminase/D-cysteine desulfhydrase"
                     /protein_id="HDV7366674.1"
                     /translation="MNFIKTISPIQKINFNGFEFYIKRDDLLGEINGNKARKLAFYIH
                     QRYPKNQSFVSYGGSQSNALAALSIFAKQRSYKLVFACEKISTFLKNNPCGNYALALE
                     NGVDFVENIHSLSLKQFALSLCKKDDVFIEQGIANLEAQYGYMELAQEIQMQSQSLKL
                     DFDIFLPSGTGTSAAFLAKYSKFKVFTCACVGDIKYLKKQILTLDPSYDFSNLEFLTS
                     DKKYHFAKPYKEFYELYMDLKLKCNIEFDLLYDILGLSIALKQEWKKPLLYIHQGGIL
                     GNSTMLERYKFKKSV"
     gene            complement(10561..11904)
                     /locus_tag="RJ259_000955"
     CDS             complement(10561..11904)
                     /locus_tag="RJ259_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDV7366675.1"
                     /translation="MQRQTWSSTLTYILTVAGATIGFGATWRFPYLVGENGGGAYVLV
                     FCIAMIIIGIPVILVENVIGRKAMTNSVDAFKQKWQSIGYMGLLGSFGIMAYYMVLGG
                     WVLVYIWELTLGNFSLANVVSKEFTHQFFNDKIAFNPLGVGIFTTVFVIINYIILKRG
                     IIDGIEKSVKFLMPLLFICLIIVVGRNLTLDGAMAGVKFYLEPDFSKILSPKLLIDVL
                     GQVFFALSLGFGVMITLSSHLNKNENMAKTAIYTGVLNTIIAVLAGFMIFPALFSAGL
                     APDSGPSLVFETLPIAFSHIHFGTIVCILFFVLLLIAALTTSLPIYQVIISVLEEKFK
                     YSKNLSINLTLGFIFILGNLPCILTYGPWRDIVIIKGKNIFDSFDFISGNILFVLTAF
                     FCCIYVGWILGKQESLKELSNNNTLKSSWFGIWFYYVKYIVPLIILIIFIYGILN"
     gene            complement(11955..12623)
                     /locus_tag="RJ259_000956"
     CDS             complement(11955..12623)
                     /locus_tag="RJ259_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HDV7366676.1"
                     /translation="MKIQSLQIGKIKNYKNFQSAFIKDTYLEETQIDFLGVLDDQIAD
                     KIHHGGYHKAIFTNSCQNYPIWERFLNKKLNFGSMGENLSIDGLCEQNVCIGDIHQFS
                     NAILQVSEPRKPCVKISKIHNNPNFTHEIFKTGLSGWYYKVLQVGQIRKHENIKILEK
                     NSTSLSVFELNQLFYSPHQILKQNPNLLDKLEKLNSLISQNWHETIHKRLKNTYDISY
                     MDSL"
     gene            complement(12620..>14155)
                     /locus_tag="RJ259_000957"
     CDS             complement(12620..>14155)
                     /locus_tag="RJ259_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HDV7366677.1"
                     /translation="INEKDISSLINLPQSSTRGNENVYYQKLNLALPNLLLERFAKNT
                     TNLIKLEFQGCSEQGLCYNPQTWYFDLISKKDAFEISKPYKAQKTDKKTKIESEESSI
                     ANFLATDNFFWILLSFFGYGLLLSLTPCILPMIPILSSLIVAKSNAKFSKKYSFFLSF
                     IYVFFMSLAYAIAGVIASFLGASIQGILQKPIILILFALIFIAFAFAMFGAFRFELPL
                     RFQTFIHKKSEKGKGVVGIAIMGFLSALIVGPCVAAPLAGALIYIANTGNALLGGSAL
                     FIMSFGMGIPLLFIGLGLGFIKPGFWMEKVKIFFGFVMLAMAIWILSRIIEENYILIA
                     YGILGVFFSVFMGIFEKSFTIISKIKKSILILILAYSLSIFLGGLFGAKNFLNPLNFN
                     TISASKHALSYDYINNFEQLKQEIQTNTKPIMLDFTASWCENCKLLDELTFSDERIIQ
                     KMQNYKLIKVDVSENNNEQIKTMKEFNVFGPPVLIFFENGKEKLKITGFISADDLLKK
                     IEP"
BASE COUNT         5157 a         1797 c         2340 g         4861 t
ORIGIN      
        1 ttttttaatt tttttatgtt ttgttctctt ttggcttttg tttttaattt tgttttgaaa
       61 ataaagataa aaataattgt tttattttta tgttttatca tggttttagg aaattatttt
      121 ttaaaagagc aaagaaataa tgccttaaaa tccgaacaag agcaaatact tttatggatg
      181 aataatttta attttttaaa agataataac ttaagtttaa ttcaaaaaga aaaagatctt
      241 tttgaaaaag atcttaaaga tcttagagaa atttttaaaa aaaatgcttt tgaaataggt
      301 atttggtggt tttctaaaga aaaagaagac ttagaaaaaa gaataaatga gagtttaaaa
      361 tgagatttga tttttttgtt tcaaagcgtt taaatatcag tagaaataaa gccttagagc
      421 ttatagaaaa tgaagagatt ttacttaatg gtaagagttt taaagcttct tttgatgtga
      481 aaaatttttt agaaaattta aaaaaaacgc aagatttaaa tcctgaagat atacttttag
      541 ccaatgagtt aaaattggat cttttaagtg aaatttatgt ttcaagagca gctttgaaat
      601 taaaaaaatt tttagaagaa aatgatattg aaataaaaca taaaaattgt cttgatatag
      661 gatctagtac gggcggtttt gttcaaattt tacttgaaaa tcaggcttta aaaatcactg
      721 ctcttgatgt gggtagtaat caactccatc caagtttaag agtaaatgaa aaaattatct
      781 tgcatgaaaa tacagatctt agagccttta aaagtgaaga aaaatttgaa cttgttactt
      841 gtgatgtgag ttttatttct cttattaatt tactttatta tattgataat ttagctttaa
      901 aggaaattat tttacttttt aaacctcagt ttgaagtggg aaaaaatatc aaaagagata
      961 aaaaaggtgt tttaaaagat gataaggcaa tcttaaaggc aagaatggat tttgaaaaag
     1021 catgtgctaa attgggttgg cttttaaaaa atacgcaaaa atcaagcatt aaaggaaagg
     1081 aaggtaatgt tgaatatttt tactactata tcaaaaatta atattacctc tttagccata
     1141 ggttgttttg atggtatgca tttaggacat ctaaaacttg taaaatgttt agatgagaat
     1201 ggggctttat tagttattaa taaatttaag ggtcaatttc tttgttcaaa tcgtcaaaaa
     1261 gaagaaattt caggaaaaaa agttatagaa gtggattttg aaagtataaa atctttagat
     1321 ggtagagatt ttttaagctt tttgaaaaaa gaatttgtca atttaaaatt tatagtggtg
     1381 ggatatgatt tttcttttgg gaaaaataga gcttataatg ctaaagatat tgagtcttta
     1441 agtgggataa aaactataat agttgatgaa tttagcatag acggaatagg tgttcatgca
     1501 agtttaatta aggatttttt atcaaaagca aatttgcaaa aagcaaaaga atttttagga
     1561 agagattata gtatcaaagg gaagatgatt aaaggacaag gtttgggctc taaagaactt
     1621 tttgcgacta taaatttaga ttgtgaaggt tattttttac ctcaaaatgg tgtttatgtt
     1681 actttgttaa aaagtcaaag aaaaacttat aaaagtgtga gttttttagg tgtaagatca
     1741 agcgatgaaa attttgctat agaaagtcat attttagaag aattgggtga aaatttcacg
     1801 caaggagagt tttttgaact cgagtttata tcttttctaa gagagaatca aaaatttcaa
     1861 gatctaaaaa aacttaaaaa tcaaattgct aaagacatag agcaagctag agaattatta
     1921 aggaaaaatg atgaaagatg aactttttaa acaaagccct aaaaaacaat ttgaatttga
     1981 taaaagcgtg gctagtgttt ttgatgatat gatcaatcgt tctgtaccat tttatagaga
     2041 aaatttagaa ctttgtggca atttattggc taaaatttta cctacaaatg caagtgtttg
     2101 cgatttgggc tgctcaagtg ctaatttttt gatttttttg gcaaatctaa gaaaggattt
     2161 taaacttttt ggcgtggata attctgcttc catgcttgaa gttgcaaaat caaaagctaa
     2221 agcttatggg cttgatataa gtttttttga agctaattta tgcgaatttg atttttttac
     2281 ttgcgatgtt tttgtagcaa attataccat gcagtttatt cgtcctccta aaagacaaga
     2341 attgcttgat caaatttata aaaatttaaa ctctaaaggc attttgatta tgagtgaaaa
     2401 aatcctttat gaagatgctt ttttgtctaa aaatatcata gaactttatg ctgattataa
     2461 agaaaaacaa ggctattcta agtttgaaat cgcagctaaa agagaagctt tggaaaatgt
     2521 tttaattcct tatagtcaaa aagaaaattt aaatatgcta gaaaaggcag gttttaagaa
     2581 aatagaaagt atttttaaat gggcaaattt tgaaactttc atagctttta aggattagaa
     2641 atattttcat cttcccattc atcttttgga aaacctatct tatatgcatt aacacaatct
     2701 tgactaatga tagctttgtg tctgcattct aaacttcttt tttttgcttc ctcggggtga
     2761 ttttgataat attctacact tttggtttgt tcgcatgctg caaaaaatat accaataagg
     2821 cttaaaaaaa gagttatttt catggtcatt tttcctgtgt catattaaca tcatcgctaa
     2881 agatagaact ttgattgttt tctgttgttt tggaaggata aatttcagaa ggtgtttctg
     2941 ctataggtgg tattataata ctttcattat tttctgaact ttggttaata tcttttgtgg
     3001 ttttttcttt ttttaaatca ttttgtttta aagcttctaa tatttgatta tcagattttt
     3061 tcggtgtgtt tggactgtat ttaccctctt catttgttgg tttaacacca acttttaatg
     3121 cattaataca atcttcgcta agagttccgc tttctttgca ttctttcgct ttttcttttg
     3181 cttcgctagg aagatttttg tagtaatttt ctgttttact atcacaagct gttatattaa
     3241 taactattaa aattgcaagt aaaatactta gtcttcgcat ttatcaatct cctaaaattt
     3301 ttaatatctt agcaaacttg tataaagcaa cgataaatta tttttcttca ttgtaagaaa
     3361 aaataggtaa agaccattga tatttgatag ctaaaagcct tgcaaaaact cctataaaaa
     3421 gagttaaaag tgtgcaaact agggcattaa gctcaagcca aattattaga gaataataga
     3481 ttgctcctgc aattatggca attcctgcat aaatttcttt ttgaaacacc aaggggattc
     3541 tcatacataa aatatctctt aaaattccac caaaaacacc ggtaattaca gcggcagcaa
     3601 cggctatgat aaagccatgg ttttgatcta tagctatttg agctccaagt atgctaaaaa
     3661 caacaagtcc tatagcatca agagttagaa ataaagtttc aagtttggtt actacgcgcg
     3721 gaatttttgt ggctacaagg gcgcaaaaac agattaaaat aatatattca ggatgtttaa
     3781 cccaagttaa aggataatgt cctaaaagca catctcgtat gcttccgcct ccaattgctg
     3841 ttacgagagc aataaaaata actccaaaaa gatccatttt gtggcgtcct gcagctaaag
     3901 ctcctgtcat tccttctgcg gaaataccta tgatataaag agtggttatc gtaagagcat
     3961 ttatctccat aatttatacc ttaaaattta tcacaattta tttgatactg tttaatattt
     4021 tcatcattta cttcgtggtt tggtgcttga tagcattctt taaatttcgg agttttaata
     4081 attttcacat aaaaacttgg tatagcaata cggtttttaa tgtattgtgg ttctttatcg
     4141 taaagtacta aatttaaaac ttcgatactt tgaaattcta aagctaaatt tctttctctt
     4201 tgttcgattt cattccaaat tttattattt atttgtgcat tttgtggggt aatattactc
     4261 attaaaaata ctgaattttg agcagcttta ctaaagctaa aagaagcatt aggcgcagtg
     4321 tgtcctcgtg tgtaaccact gtttttataa tcactccaag tagtgcggta ttttttagga
     4381 atatttgtat catcttcaaa gcgagggcgt tttttgattt gtttatcttt taaatttgaa
     4441 gcttctactt tataagcaac ggcttttgtg cctttgagtt tataatcata gcaatttaga
     4501 taaaaaaact tatctaagat ttgcgagcaa tttatattgt taaaataaga agaaaaatca
     4561 gcactaggtt tgtaagattc taaggcaaaa atattaagag atatagcgag taaaaagatg
     4621 aaaattttca tttaagttcc ttatctttac ttttgcaaag atgatttaaa aaacattctt
     4681 tacataaagg ttttttagct ttacaggtgt agcgtccaaa aagaaccatg gcttgatgaa
     4741 gatagttaag attgtcttta aatatgcctg ttaaatcttc ttctgtagct tctggagttt
     4801 ttgctttgct aagtcctaag cggtgagaaa ctctaaaaac atgagtatct acagccatga
     4861 aatttgctcc gcaccattct attaaaacta catgagcggt tttttgtcct acgcctgcta
     4921 aggattttaa attttgttca tcaagaggaa tttctccgtc aaaattttca caaactgctt
     4981 ttgccatttt tataagattt tgtgctttat tattaaaaaa tgaacaagtt tgtatatagg
     5041 ttttaagact tgataaattt gcatttgcaa gggatttaat atcaggataa gctttaaaaa
     5101 gatcaggagt gatgagatta actcttttat cagtgcattg ggctgaaagc attacgcaga
     5161 ctaaaagctc atataaattt gaaaatttaa gctctgttac aggcttgtca aaatgtttta
     5221 aaaaaagttc tttgatttct aaatttcttt tcatttttta attttagtta attagcttta
     5281 aaccaagttt agatataatt gattttatat acattttatt aaaaaggaaa cctaatgaaa
     5341 aaattttctt tagtcgcagc aactttgatt gcaggtgtag ttttaaatgt aaatgcagct
     5401 acagtagcta ctgttaatgg caagagcatt agcgatacag aagtaagtga attttttgcc
     5461 cctatgctta gaggacagga ttttaaaact ttgccagata atcaaaaaaa agctcttatt
     5521 cagcaatata ttatgcaaga tttaattttg caagatgcta aaaaacaaaa tttagaaaaa
     5581 gaccctttat acacaaaaga acttgatcgt gcaaaagatg caatacttgt taatgtttat
     5641 caagagaaaa ttttaaatac tattaaaatt gatgcggcta aagttaaagc tttttatgat
     5701 caaaataaag acaaatatgt aaaacctgca agagtgcaag caaaacatat cttagtagcg
     5761 acagaaaaag aagctaagga tattattaac gaacttaaag gtttaaaagg taaagaacta
     5821 gatgctaaat ttagcgagct tgctaaagag aaatcaattg atccaggttc aaaaaaccaa
     5881 ggtggtgagc ttggttggtt tgatcaatca actatggtaa agccttttac agatgctgct
     5941 ttcgcgctta aaaatggtac tattactaca actccggtaa aaacgaattt tggttatcat
     6001 gtaatcttaa aagaaaattc gcaagctaaa ggtcaaatca aatttgatga agtaaaacaa
     6061 ggtattgaaa acggacttaa atttgaagaa tttaaaaaag ttatcaatca aaaaggccaa
     6121 gatctcttaa atagtgctaa agtggaatat aaataatggg tgttttagac attgtaaaag
     6181 caggggtgat tagcggagat gagcttaata aaatttatga ctatgctaaa gcagagggtt
     6241 ttgctatccc tgctgttaat gttgtaggaa ctgattctat taatgcagtt ttagaagctg
     6301 caaaaaaagt taattctcca gttattatcc agttttcaaa tggtggggca aaattttatg
     6361 cagggaaaaa ttgtcctaat ggagaagttt tgggtgcaat tagtggggct aaacatgtac
     6421 atttacttgc taaagcttat ggtgtgcctg tgattttaca cactgatcat gctgcaagaa
     6481 aacttttgcc ttggattgat gggcttattg aggcaaatgc acaatataaa aaaacccatg
     6541 gacaagcttt atttagttct catatgcttg atcttagcga agaaagttta gaagaaaatc
     6601 ttagcacttg tgaagtttat cttcaaaaac ttgatgcttt aggtgtcgcg cttgaaatag
     6661 aattaggttg tacaggtggc gaagaagatg gagtggataa tacaggtatt gataattcca
     6721 agctttatac ccaaccagaa gatgtagctc ttgcatatga aagacttgga aaaattagtg
     6781 ataaattttc aatcgcagca agctttggaa atgtacatgg agtttacaag ccaggaaatg
     6841 ttagcttaca acctgaaatt ttaaaaaatt cgcaaaaatt tgtaaaagat aaatttgctt
     6901 taaatagcga taagcctata aattttgtat ttcatggcgg tagcggtagt gagctaaaag
     6961 atattaaaaa tgcagtaagc tatggcgtaa ttaagatgaa tattgacaca gatactcaat
     7021 gggctttttg ggatggggtg cgtgaatatg aacttaaaaa tagggcttat ttgcaaggac
     7081 aaattggaaa tccagaaggt gatgacaagc caaataaaaa atactatgat ccgcgtgttt
     7141 ggttaagaag cggtgaagaa agcatgataa aacgtcttga aatcgctttt gaagatttaa
     7201 actgtataaa caaaaactaa gcattttaaa agcttagttt tattttgttt taaaaatttt
     7261 tatcaaatta agtagcaatc tttaaaataa aatttttaat gaggtattgg tttcatggat
     7321 attaaatcag atgaaatttc agaacttgtt ttgcctgaag gcaaagatgc aagaggttct
     7381 ttggtttatt ttaaaattat ttttattcca gcttttcttt atattttgat tttattgggt
     7441 tattttaatg taattgactt taaggtcgaa ttacatacgg ttattatgac aggtgtgatt
     7501 ttttttacag cattgatttt tgctagacat agtgctgagt atgcgtatag tatttttgaa
     7561 caacaaaaag atgaatttaa acaggcttta aaaagacata ttatgaggca ttttcttgcc
     7621 atagggaaag acacgaaatc aaatgccaat tttgatgact ttgcttatac atatattaag
     7681 ggtgcaagaa atgagaattt tgctagtata ggttcggcaa tttttccaat gatgggaatt
     7741 ttaggaactt ttatcagtat agctttttca atgccaaatt ttagttctag tgatacagcc
     7801 gctttagaac aagaaattgc agatttgtta agtggagtgg gaactgcttt ttatgtttca
     7861 atttatggaa tttttcttgc attatggtgg atgttttttg aaaaatatgg taaaagcaaa
     7921 atagatcgtt tgctaaatcg tcaaaaaaac gctacaagtg gatttttttg gacaaaagaa
     7981 gagcttgatc aaagatattt aactgaaagt ttgcaacatt ttgaaaaaat tggagcaatt
     8041 tttaaacaag ttagtaatga tgattttttt gcagagcttg atcatgctat tgatagaaag
     8101 tttggtattt tccaagatat gctaaatgta gaagaaaagg ctattagatt aagtagtgaa
     8161 catatcaaac aaaccatggg tgagcttagt aaagcacaaa gagatcaacg cgatcttgga
     8221 aagctttata gtgaaatgtt aaatggtata ggtttgctca atcaaaattt aaaagaaatc
     8281 aatacaagaa tgtcagaaca atataatcgc ttgcttgata tcagtagtga taaaattcat
     8341 catcttgata agacactaag tgcattcgat gaaaaaatag agcgttttgg taaaaatttt
     8401 gaactttatg aaaaagcaat gttggaaagt caagaaaagg tttttgaggg atttaaagca
     8461 agcttgtttg aaggtatgca taaatttaaa gaagtatatg aagaagaaaa aagtattgat
     8521 gctaaaatca aaatgatgga tgagcttaaa aaagaaatga aagcacttga tgaagaaaca
     8581 agtcaaatga tgagcaagct ttctggggat gaaaatcaga ataaagaaaa tgaaaccaaa
     8641 caaatagaag atttttcaga gtctaagact gaagaaaatc aagatgaaat tcaagcagaa
     8701 atatctaagc aagaaagcaa tgatgagcta aaaaatgaag ataaagaaaa taaatgaaaa
     8761 atgagtcaaa agaagatagc aatttttgga tagcttatgc tgatttaatg gcaggattgc
     8821 tgtttgtttt tattttgcta ataggtgcta ttgttgtaaa atatgtttta actcaaagtg
     8881 atttaaaaga aatcaaagat aatctcaata aacaagaggc acgcttagag gagagtaaag
     8941 aagagcttag aaataaagaa gccatagtgt ttaaactaag ttctgattta aacaatgctt
     9001 ctagtgcttt aaatcttgct aattctcaaa aagcagaatt agaggctaat attacaaatt
     9061 acaagcagtt aagtaaagat ttaaactcaa ctttagataa taaagataag caaattttga
     9121 ttttactagg tcaactagag aaaaaagatg aagagcttaa aaatttacaa gaagattttc
     9181 aaaaagctaa agaaaaggtg caaaatcttg gtttgattcg tgaaaattta agcaaggaat
     9241 tacaaagtaa gcttgataat aatatcacta tagatgaaaa gataggatct atttctttgc
     9301 ctgctgaagt actttttgat aaagattctt atgtgttaaa aaatgaggca aaggcaagtt
     9361 tgagaaaaat cttaagcgaa tattttgatg ctattcttga agatccaaaa attttttcta
     9421 acattgaaaa tatcattatt gaaggacata ctgatagtga tggatcttat atttataatt
     9481 tagatttgtc gcaaaaaaga gcttatgagg tgatgaattt tatctatact ttttataaga
     9541 gtgataagct tcaaaagctt ttaatggcaa gtggacgttc tttttcagat cctgtgtttg
     9601 tcaacggagt tgaagataag gataagagtc gtcgcataga aataaaattt agcattaaaa
     9661 atgataatgc tttaaaggat gtagaaaaat tctttgaatt tcattaaaac aattagtcct
     9721 atacaaaaaa tcaattttaa cggatttgaa ttttatatta aaagagatga tttattaggg
     9781 gaaattaatg gaaataaagc taggaaactt gctttttata tccatcaaag atatcctaaa
     9841 aatcaatctt ttgtaagtta tggaggaagc caaagtaatg ctttggcggc attaagtatt
     9901 tttgctaaac aaagatcata taagcttgtt tttgcttgtg aaaaaatttc tacttttctt
     9961 aagaataatc cttgtggaaa ctatgcttta gctttagaaa atggtgttga ttttgtagaa
    10021 aatatccatt ctttatcctt aaagcaattt gctttgtctt tgtgtaaaaa agatgatgtt
    10081 tttatagaac aaggtatagc taatttagaa gctcaatatg gctatatgga acttgctcaa
    10141 gaaattcaaa tgcaaagtca aagtttaaag cttgattttg atattttttt accttcgggt
    10201 acaggcactt cggcagcttt tttggcaaag tattctaaat ttaaagtatt tacttgcgct
    10261 tgtgtaggtg atattaaata tcttaaaaaa caaattttaa cattagatcc aagctatgat
    10321 ttttcaaatt tagaattttt aacaagtgat aaaaaatatc actttgctaa gccgtataaa
    10381 gaattttatg agctttatat ggatttaaag ttaaagtgca atatagaatt tgacttgttg
    10441 tatgatattt taggattaag tatagcatta aaacaagagt ggaaaaaacc attgctttat
    10501 atacatcaag gtggaatttt aggaaattcc actatgttag agagatataa atttaaaaaa
    10561 tcagtttaaa attccataga taaaaatgat taaaataatc aaaggtacta tatattttac
    10621 ataataaaac caaattccaa accatgaact tttaagtgta ttgttattgc taagttcttt
    10681 tagactttct tgtttgccta aaatccaacc tacataaata cagcaaaaaa atgcagttaa
    10741 aacaaacaaa atatttccac taatgaaatc aaaactatca aaaatgtttt ttcctttgat
    10801 gataacaata tcacgccaag gcccataagt tagaatacaa ggaagattgc caagtatgaa
    10861 gataaaccct agagttaggt taatagaaag atttttagaa tatttaaatt tttcttctaa
    10921 tacgctaata ataacttgat aaattggcaa gcttgtggtt aaagctgcaa tcaagagtaa
    10981 gacaaaaaat aaaatacaca caatagtgcc aaaatggata tgagaaaatg ctataggtaa
    11041 agtttcaaaa accaaagaag gcccgctatc tggagcaagt cccgctgaga aaagtgctgg
    11101 aaaaatcata aaaccagcca aaacagctat gatagtattt aaaacccctg tataaatagc
    11161 ggtttttgcc atattttcat ttttattaag atgagatgaa agtgttatca ttaccccaaa
    11221 acctagggat aaagcaaaaa agacttgtcc taaaacatcg attaaaagtt ttggtgataa
    11281 aattttacta aaatcaggtt caagataaaa tttaactcca gccatagctc catcaagggt
    11341 taaattgcgt cctacaacaa taataagaca gataaataat aaaggcatta aaaattttac
    11401 ggatttttct ataccatcta taatgcctct ttttaaaata atataattaa taattacaaa
    11461 aacagtggta aaaataccaa ctcctaaagg attgaaggct attttgtcgt taaaaaactg
    11521 atgagtaaat tctttgctta ctacattggc aagactaaaa ttccctaggg ttaattccca
    11581 aatataaact aaaacccatc ctccaagtac catgtagtaa gccattatgc caaagcttcc
    11641 taaaagtccc atatatccaa tactttgcca tttttgtttg aaagcatcta cgctatttgt
    11701 catcgctttt ctgcctatga cattttcaac taaaataaca ggaatgccta tgataatcat
    11761 ggctatacaa aaaactaata cataagcacc gccaccattt tctcctacaa gatagggaaa
    11821 acgccaagtt gctccaaatc ctatggttgc tccagcaact gttagaatat aagttagtgt
    11881 gctactccat gtttgtcttt gcatgattat cctttcgaaa aagaattatt ttacctaaaa
    11941 ataactttaa aaacttataa gctatccata tagcttatat cgtaagtatt ttttaagcgt
    12001 ttgtgtatcg tttcgtgcca attttgagat atgagagagt ttaatttttc taatttatct
    12061 aataaattcg gattttgctt aagaatttga tgcggggagt aaaaaagttg attgagttca
    12121 aatacactaa gtgaagtaga atttttttct aaaattttaa tgttttcatg ctttcgtatt
    12181 tgtccaactt gtaaaacttt ataataccat ccactcaagc ccgttttaaa aatttcatgt
    12241 gtaaaatttg gattattgtg aattttagaa atttttacac aaggttttct aggttcgctt
    12301 acttgcagta ttgcatttga aaattgatgt atatcaccta tgcaaacatt ttgttcacaa
    12361 agcccatcga tgctcaaatt ttcacccatt gagccaaaat ttagcttttt attaagaaat
    12421 ctttcccata taggatagtt ttgacaagag ttggtaaaaa tagccttatg gtagcctcca
    12481 tgatgaattt tatcagctat ttgatcatct aaaacaccta gaaaatcaat ttgtgtttct
    12541 tctaggtaag tatctttaat aaatgcgctt tggaaatttt tatagttttt aattttccct
    12601 atttgcaaac tttgaatttt catggttcta ttttttttaa taaatcatca gcactgataa
    12661 aacccgtgat ttttaatttt tcttttccat tttcaaagaa aattaaaaca ggtgggccaa
    12721 aaacattaaa ttctttcatg gttttaattt gttcattatt attttcgctt acatcaactt
    12781 tgataagttt gtaattttgc attttttgta tgattctttc atcgctaaag gttaattcat
    12841 ctaaaagttt gcaattttca caccaagatg cagtaaaatc aagcattata ggctttgtat
    12901 ttgtttgtat ttcttgcttt aattgttcaa aattgttgat ataatcatag cttaaagcat
    12961 gttttgaggc agatatagta ttgaaattta aaggatttaa gaaattttta gccccaaaaa
    13021 gtcctcctag gaaaatactt agagaataag ctaaaataag aattaaaata ctttttttaa
    13081 ttttagaaat tattgtaaaa cttttttcaa aaattcccat aaaaacacta aaaaatacac
    13141 ctaaaattcc ataggcaatt aaaatgtaat tttcttcaat aattctagaa agtatccaaa
    13201 tagccatagc caacataaca aaaccaaaga aaatttttac tttttccatc caaaaaccag
    13261 gtttaataaa acctaatcct aagcctatga aaagcaaagg tatacccatg ccaaaactca
    13321 tgataaaaag tgcactacca cctaataaag cattgcctgt attggctata taaattaaag
    13381 cacctgctaa aggagctgct acgcaaggac ctactattaa agcagataaa aatcccatga
    13441 tggctatacc tacaactccc ttcccttttt cgcttttttt atgtataaag gtttgaaatc
    13501 ttaatggcaa ttcaaaacga aaagctccaa acatagcaaa agcaaaagct atgaaaatta
    13561 gagcaaaaag aattaaaata ataggttttt gtaaaattcc ttgaatactt gctcctagaa
    13621 aacttgctat aactccagca atagcatagg ctaaagacat gaaaaaaaca tagataaaag
    13681 agagaaaaaa actatatttt tttgaaaatt tagcattact ttttgctacg ataagagaag
    13741 ataaaatcgg aatcataggt aaaatacaag gtgttaagga gagtaaaagt ccatagccaa
    13801 aaaaacttag caaaatccaa aaaaagttat ctgttgctaa aaaatttgct atagagcttt
    13861 cttcagattc aattttagtt tttttatctg ttttttgagc tttgtaaggt tttgaaattt
    13921 caaaagcatc ttttttagaa atgagatcaa agtaccaagt ttgaggatta taacacaagc
    13981 cttgttcaga acagccttga aattcgagtt tgattaaatt tgtggtattt tttgcaaagc
    14041 gctctagtaa taaatttggc aaagctaaat ttaatttttg ataataaaca ttttcattac
    14101 ctcttgtaga actttgaggt agattaatca aagaacttat atctttttcg tttat
//
LOCUS       DAPIWJ010000040        13977 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.040, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000040 DAPIWJ010000000
VERSION     DAPIWJ010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13977)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13977)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13977
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.040"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            27..722
                     /gene="ung"
                     /locus_tag="RJ259_000958"
     CDS             27..722
                     /gene="ung"
                     /locus_tag="RJ259_000958"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HDV7366678.1"
                     /translation="MEEITINIDKIKINDDWKEFLRDEFQKKYFLEIKKQYLNAINQN
                     IIIYPPANLIFNAFNLCPLKEIKIIILGQDPYHQPNQAMGLSFSVPKNVKIPPSLNNI
                     FKELQNDLNITPAKSGDLSSWAKQGVLLLNSILSVEANKAASHSSWGWQEFSDAIIHK
                     LSNEKSGLVFMLWGNYAKNKEILIDNTKHLILKAAHPSPLARTGFLGCKHFSKANEFL
                     KKVGKIPIDWKIV"
     gene            complement(732..1898)
                     /locus_tag="RJ259_000959"
     CDS             complement(732..1898)
                     /locus_tag="RJ259_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366679.1"
                     /translation="MTINSANPYQNLTLSNPLQNSSALNLIKDSKALDQEGNENSLEQ
                     LSYIFNNTTYASEFGFRINEEGFFDKDLNKIANIPESYDINIKSVRSIAKELAKQDEN
                     LNYNKIDLPYLLNSYHSSLKSINSEFLQDDNAYLSRDLISKLSSGFSTDNGEFLGQIS
                     RIYNNQEEIDLALSNITNLNTLMLDNKITNFHFDKAIENTSSNEILKPYLTKNAEVSK
                     SGLLMNFIYHDIKTQNEKEFNFFMKPATLELSSHQNLQKILKGETDIEDYIKKENEKK
                     MSFDLYLYINGVDKKTSTQDKLSVFFQQYINYQKDMDLREFANSSSIFQIYIDQNRND
                     FDALKKQYQNQSQDTQRLEEANQLRSSSIENFLDRRQKQANINKILNSYMSVMV"
     gene            2054..2245
                     /gene="rpmI"
                     /locus_tag="RJ259_000960"
     CDS             2054..2245
                     /gene="rpmI"
                     /locus_tag="RJ259_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HDV7366680.1"
                     /translation="MPKMKSVKSAVKRFKVGKNKIKRGSAFRSHILTKKPAKRMRGLR
                     TAKYVHSTNVKAVEKMLGI"
     gene            2339..2692
                     /gene="rplT"
                     /locus_tag="RJ259_000961"
     CDS             2339..2692
                     /gene="rplT"
                     /locus_tag="RJ259_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HDV7366681.1"
                     /translation="MARVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSLV
                     YAYRDRRRKKRDFRRLWIVRINAACRLNDLSYSRFINGLKKAGIELDRKILADLAMND
                     AAAFAKIAEAAKKAL"
     gene            complement(2745..3557)
                     /locus_tag="RJ259_000962"
     CDS             complement(2745..3557)
                     /locus_tag="RJ259_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HDV7366682.1"
                     /translation="MGIAKSLVAIFFYEVENFNDFKPRYLKTFIQKYSDFKYYYLNIR
                     AQKLEMTNEINKIILNQLKQNTSEIDKNTSIFKEIFEELENIRRSLTTISESFTNFTN
                     YLEYNLYQSEEKMNLEKEVQSSLKNIDQLNSILDLISGIAEQTILLSLNAGIEAARAG
                     KLGRGFAVVADEVRKLSENTQMGLGEMEGAIKLVIQTIQSIAKSSNSSTQEMNFIRDK
                     TNEFSKIISNLINSGKEISDKLEQRSNVSEDFEKNVNQLKCYEDVLAKLNQY"
     gene            complement(3561..3923)
                     /locus_tag="RJ259_000963"
                     /pseudo
     CDS             complement(3561..3923)
                     /locus_tag="RJ259_000963"
                     /inference="COORDINATES: protein motif:HMM:NF021926.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FIST C-terminal domain-containing protein"
     gene            complement(3848..4402)
                     /locus_tag="RJ259_000964"
     CDS             complement(3848..4402)
                     /locus_tag="RJ259_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HDV7366683.1"
                     /translation="MILFSEDMIENLCTNKIKLFSDIKDYTERKKLIEKEVLFINIPF
                     EAHCINTLYYLIYDGLSQSESSLLELLYKHNPYPCALVGGGSSGNMDFSGAFIFYNGE
                     ILKNQALSIHVQFKPKYRFNLMKSQNFNPQSNITFTILDVSLYDKTVRELINKKPFRL
                     KLYVIILTALLKNLKIKCKNILLL"
     gene            4884..5741
                     /gene="cheP"
                     /locus_tag="RJ259_000965"
     CDS             4884..5741
                     /gene="cheP"
                     /locus_tag="RJ259_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheP"
                     /protein_id="HDV7366684.1"
                     /translation="MIGDMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKVAE
                     IISSDPLMTAKLLQLANSPYYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKID
                     VSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLGIVIFSNFLIQN
                     HKDKDFLAFLNKNENLALAENEFLGVDHISFLGFLLHRWNFDDVLIESICFVRTPHAA
                     REKVKKSAYALAITDHLFAPHDGSSPFNAKAAVALLKEAKTQGINFDLNNLLSKLPNK
                     AKENLNKED"
     gene            5769..6248
                     /gene="cheQ"
                     /locus_tag="RJ259_000966"
     CDS             5769..6248
                     /gene="cheQ"
                     /locus_tag="RJ259_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheQ"
                     /protein_id="HDV7366685.1"
                     /translation="MMKSLILPPNEFLDHYILNAEFHRFAGISKNAYKFWKNAEIGRY
                     QGTRIIFLHRNCILEKHQQALRQCSGLNGFVLASAFCSFTGLAPSHLVEKNNSSIYKL
                     LELKEICGIKFVNLKKFYDFLGLNYHQHIYIEKCHFFSPAPFEKRIKITESMCVGYY"
     gene            complement(6217..7527)
                     /locus_tag="RJ259_000967"
     CDS             complement(6217..7527)
                     /locus_tag="RJ259_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7366686.1"
                     /translation="MSKTLNQKDIKVLGLSSLGGTLEFYDFIIFVFFANYISTNFFPK
                     DLSSFWQMFNTYGIFAAGYLARPLGGVILAHFGDKFGRKRMFMISILLMVIPTFTLAF
                     IPNYESIGFLCIVLLVFIRICQGIAIGGELPGAWVFVYEHAPQGQKRTYLGILTASVV
                     GGILLGSLVFLIMNKIYTQEELHEWAWRIPFFLGGIFGIISAYLRKFLRETPVFEQMK
                     KDKALEKFPLKEVFKKAKMGIVLSMMITWVLTGCIVVMILLMPSYMAKILQINTSIQT
                     YLQIGGILLICLGCIISGILADKIGVIKSCVFFSVFFGIASLLYFNTLYRQNADFNLV
                     ACLYLLVCFFSGVMNFCPLIMSEVFDAKIKFSGLSFSYNIAYAIAGGLTPQLAFFLHS
                     FALNNLSNFWRFSLGLYVFFLAIIALLCAFIFSYLNNTQRTYSQ"
     gene            complement(7530..7685)
                     /locus_tag="RJ259_000968"
     CDS             complement(7530..7685)
                     /locus_tag="RJ259_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HDV7366687.1"
                     /translation="MAYEDEEDLNYDDYENEDEEYPQNHHKNYNYDDDDYEYDDDNND
                     DDFYEMD"
     gene            7778..8251
                     /gene="moaC"
                     /locus_tag="RJ259_000969"
     CDS             7778..8251
                     /gene="moaC"
                     /locus_tag="RJ259_000969"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HDV7366688.1"
                     /translation="MKLSHLDEKNHPKMVDVSDKNITLRIATASGIIYMSQEAFDVIK
                     NNTAKKGPVLQTAIVAAIMGVKKTSEIIPMCHPLMLSKVETNIVEFVKECAFKLIVTV
                     KCEGKTGVEMEALSGVSIGLLTIYDMIKAIDKSMRITDIVLESKEGGKSGKFVRS"
     gene            8229..8492
                     /locus_tag="RJ259_000970"
     CDS             8229..8492
                     /locus_tag="RJ259_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 domain-containing protein"
                     /protein_id="HDV7366689.1"
                     /translation="MVNLCDLKKEPQINYPTFWDYKVIFEVHVKASEIFEEILGQREY
                     KFKHSNSSASGKYQSYLLNVYVDSKKDRLDIFDKLKAKAKFVL"
     gene            8482..9642
                     /locus_tag="RJ259_000971"
     CDS             8482..9642
                     /locus_tag="RJ259_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366690.1"
                     /translation="MYFKKEGKMKNTLIIFENSLSNLGKDEASDLLEDLSFNLAYKQI
                     SHNPHETKKVLNSLLVEFLTILKKLDFFDDENVTKVIKALVKASIVDAQNSLYEYISE
                     AELLNKQIENQKNLIKNQISDNFFEFENILQECSFCDEFSGGLNDAILFDIEMLGILK
                     ETAESAFLTTLEKAEDIELTSSEIAKNLVYNAICEAHFEKERILKISSIILNTAFEIA
                     NESMAYAKDLCLGVIKGTRDGIVLAMEKFKASLTYANFEEDVSLKSKELIGIEDDFIA
                     LLKKEIQLQNDPCKSIVENLLEHELDNLFAKFRRLAGESREQLILVLNDIKKNPKIND
                     FNKLTQRKLNRFKQEIFELEKIASEKYKDLNSKKAKKLGVRLWEKAKKFVKK"
     gene            complement(9661..10419)
                     /gene="xth"
                     /locus_tag="RJ259_000972"
     CDS             complement(9661..10419)
                     /gene="xth"
                     /locus_tag="RJ259_000972"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HDV7366691.1"
                     /translation="MKLLSWNVNGLRAICDKNALDWIAQEQIDFIGFQEIKAHEDKFP
                     KKIYEYPFKHMYFNSAKRAGYSGVMSLCNFNSEVKKCEFFDDEEGRVLEHRFKNIALF
                     NIYFPNGQKDEERLNFKMQFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKA
                     NANTSGFLPIERAWIDDLLKLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDY
                     FFISKGLKDKLKNAFIRDDIFGSDHAPVGIEIDI"
     gene            10537..12075
                     /gene="eptC"
                     /locus_tag="RJ259_000973"
     CDS             10537..12075
                     /gene="eptC"
                     /locus_tag="RJ259_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A/FlgG phosphoethanolamine transferase
                     EptC"
                     /protein_id="HDV7366692.1"
                     /translation="MLRLTWFQFTFFNSLMIVLLNFNLFYFVYEKNTQNWLITFVFIV
                     AYFALVHVICSLLFIKFFTKFFSILFIISSFLSVYFISFYGVLIDSDMMQNVVQTDIK
                     EVKDLLNLKLILFVVLALLLVFYVVKVKIDYYGSFKSHIKIKIINIISGLIVVCAVLI
                     PLSKTFLPFFRNYNEIRMYNTPFYQIYAVYRYYVRFVKAKPEFKTIANDAYRENNHTK
                     KLLVLVVGETARAANYSLGGYTKNDTNFYTKKDNVVFFDNFSSCGTATAVSLPCMFSI
                     SKRENYSSSEFQENAMDVLYKTGVDAAWFDNNSGGCKGVCDRLAYKQKLSSDLDENLL
                     APFKEKLNHLSDQNIIVLHLQGSHGPTYYKRYPSEFKKFTPTCDTNELSKCDSEALIN
                     TYDNTLLYTDYLLSEIIKLLKEQKSYESSLFYLSDHGESLGENGIYLHGMPYAIAPSY
                     QTYIPAIFWSNDKNLMNLAKEHKGLKLSQDNLFSTLLGYFDVKTSVYEPEYDLLNSKL
                     KANP"
     gene            12072..12428
                     /locus_tag="RJ259_000974"
     CDS             12072..12428
                     /locus_tag="RJ259_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HDV7366693.1"
                     /translation="MKPKYHFLNNARYALEGFFALFKNEMAFRIELCIIIPAVVFSFF
                     LKVSFLEHLLLVSVLILILIVEALNSAIEACVDLITNEWHEKAKIAKDCASAAVFFSV
                     LLALFVWGFILYNIYL"
     gene            12425..12670
                     /locus_tag="RJ259_000975"
     CDS             12425..12670
                     /locus_tag="RJ259_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HDV7366694.1"
                     /translation="MKFENLIREILGKKRFELLKFLCENADENGFIMIKISDLEEKLH
                     QSKPTIIATFKFLEEKKLFKRLKNGFYQLNIGDKNET"
     gene            12660..13667
                     /gene="pyrC"
                     /locus_tag="RJ259_000976"
     CDS             12660..13667
                     /gene="pyrC"
                     /locus_tag="RJ259_000976"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HDV7366695.1"
                     /translation="MKLKNLLDMHLHLRDNQMLELIAPLSARDFCAAVIMPNLIPPLC
                     NLEDLKAYKMRILKACKDENFTPLMTLFFKNYDEKFLKSAKDEIFGIKLYPAGITTNS
                     NGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVMDRESNFAKIYEKLAKHFPRLK
                     IVMEHITTKTLCELLKDYENLYATITLHHLIITLDDVIGGKMNPHLFCKPIAKRYEDK
                     EALCELAFSGYEKVMFGSDSAPHPRDTKECCGCAAGVFSAPVILPVLAELFKQNSSEE
                     NLQKFLSDNACKIYDLKFKEDKILTLEEKEWQVPNVYEDKYNQVVPYMAGEILKFQLK
                     H"
     gene            complement(13692..13913)
                     /locus_tag="RJ259_000977"
     CDS             complement(13692..13913)
                     /locus_tag="RJ259_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366696.1"
                     /translation="MVKNLIIKFGRLILDAIAAISFVVALLYSLFMMFSIGFLAGLLS
                     LIVSFIALFLSFFVIYLVIDIRDALVNKA"
BASE COUNT         5004 a         1830 c         2072 g         5071 t
ORIGIN      
        1 taataattta aataattagg gataatatgg aagaaattac aataaacata gataagatta
       61 aaataaatga tgactggaaa gaatttttaa gagacgaatt tcaaaaaaaa tattttctag
      121 aaatcaaaaa acaataccta aatgcgatta atcaaaatat aattatttat ccacctgcga
      181 atttaatctt taatgctttt aatttatgtc ctttaaaaga aattaaaatt attatcctag
      241 gacaagatcc ttatcatcaa ccaaatcaag caatggggct tagtttttcg gttccaaaaa
      301 atgtaaaaat cccaccaagt cttaataata tttttaaaga attgcaaaat gatttaaaca
      361 tcactccagc aaaaagcgga gatttaagct cttgggcaaa acaaggagtt ttgctcttaa
      421 attctattct tagcgttgaa gcaaataaag cagctagcca tagttcgtgg ggttggcaag
      481 aatttagtga tgctataata cataaattaa gtaatgaaaa atcagggctt gtttttatgc
      541 tttggggaaa ttacgcaaaa aacaaggaga ttttgattga taatactaag catttgattt
      601 taaaagcagc tcacccaagc cctttagcta gaacaggatt tttaggttgt aagcattttt
      661 caaaggctaa tgaattttta aaaaaagttg gtaaaattcc tatagattgg aaaatagttt
      721 aaaaaattat tttaaaccat tacagacata taagaattta gaattttatt tatatttgct
      781 tgtttttgac gacgatctaa aaaattttct atagagctag aacgtagttg atttgcttct
      841 tctaatcttt gcgtatcttg gctttggttt tgatattgtt ttttaagagc atcaaaatca
      901 ttgcgatttt gatcgatata aatttgaaat attgaacttg aatttgcaaa ttctcttaaa
      961 tccatatctt tttggtagtt aatatattgt tgaaaaaata cagatagttt gtcttgagtg
     1021 cttgtttttt tatctacgcc attaatataa agataaagat caaaactcat ctttttttca
     1081 ttttcttttt tgatgtaatc ttctatatct gtttcgccct tgagaatttt ttgtaaattt
     1141 tgatgagagc ttagttctaa agtggcaggt ttcataaaaa agttaaattc tttttcgttt
     1201 tgagttttta tatcatggta gataaaattc attaaaagac cagattttga tacttctgca
     1261 tttttagtta aataaggttt taaaatttca ttagaagaag tgttttctat ggctttatca
     1321 aaatgaaaat tagttatttt attatctaac attaaagtat ttaaatttgt gatattgctt
     1381 aatgccaaat caatttcttc ttgattgttg taaattcttg aaatttggcc taaaaattct
     1441 ccattatctg ttgaaaaacc tgatgatagt tttgaaataa gatcgcgact taaataagca
     1501 ttatcatctt gtaaaaattc tgaatttata gattttaatg aactatgata gctatttaaa
     1561 agataaggta gatcaatttt attgtagttt aaattttcgt cttgttttgc gagttctttt
     1621 gctatgcttc taacactttt aatgttgata tcataagatt ctggtatatt tgcaatttta
     1681 tttaaatctt tatcaaaaaa accttcttca ttgattctaa atccaaattc actagcataa
     1741 gtggtattat taaaaatata acttaattgt tctaagctat tttcatttcc ttcttgatcc
     1801 aaagctttac tatctttaat caaatttaga gcagagctat tctgcaaagg attagataag
     1861 gttaaatttt gatatggatt tgccgaattt atagtcattt taaatctttc caaaatattg
     1921 ctgatttttt ataagcaaaa ggtgtgccaa gttttttaaa aattaaattc agtcaaaaat
     1981 tagaaaaaat ttgatagtat ttagcttttc ttttaatttg aaaaataaaa atttatctaa
     2041 ataaggaaag cgtatgccaa agatgaaaag cgttaaaagc gcagttaaac gcttcaaagt
     2101 aggtaaaaat aaaatcaaaa gaggctcagc ttttagaagt catattttga ctaaaaaacc
     2161 tgcaaaaaga atgcgtggtc ttcgcacagc taaatatgtg catagcacaa atgtaaaagc
     2221 tgttgaaaaa atgctaggaa tttaagtttt tgactaaaag tcattcaaac tcccctctga
     2281 gataaaattt caagggtaag ctccaaattt ggacgccact ttatgaaagg aaataaaaat
     2341 ggcaagagta aaaacaggtg ttgttagacg ccgcagacat aaaaaagttt taaaattagc
     2401 gcgtggtttt tatagtggac gccgcaaaca ttttagaaaa gcaaaagaac aattagaaag
     2461 aagtctagtc tatgcttatc gtgatagacg ccgcaaaaaa agagacttcc gtcgtctttg
     2521 gattgtgcgt atcaatgctg cttgcagact caatgattta agttattcaa gatttatcaa
     2581 tggtcttaaa aaagcaggca ttgaacttga tagaaaaatt ctagcagatt tagctatgaa
     2641 tgatgctgct gcttttgcaa aaattgcaga ggctgcaaaa aaagcacttt gattttttag
     2701 tataagaatt tcaagatttt tgattcttga aattcttaat tttttcagta ttgatttaat
     2761 ttagctagaa catcttcata acatttgagt tgatttacat ttttttcaaa atcttcgctg
     2821 acattgcttc tttgttccaa tttatctgaa atttctttac ctgaatttat aagatttgaa
     2881 atgattttgg aaaattcatt agttttatct cttataaaat tcatttcttg agtactagaa
     2941 ttggaacttt ttgcaatgga ttgtatggtc tgaataacta atttgatagc tccttccatt
     3001 tcacctagac ccatttgggt attttctgaa agttttctaa cttcatcagc tacaactgca
     3061 aatccacgac caagttttcc agctctagca gcttctatac ctgcatttaa agataaaagg
     3121 atagtttgtt cagcaatccc tgaaataaga tctaaaatac tatttaattg atctatattt
     3181 ttcaaagagg attgtacttc tttttctaaa ttcatttttt cttcgctttg gtaaaggttg
     3241 tattctaggt agttagtgaa attggtaaaa ctttcactaa tagttgtaag acttcttctt
     3301 atattttcaa gttcttcaaa aatttcttta aatatacttg tatttttatc aatttctgat
     3361 gtattttgtt tgagttgatt taagattatt ttattaatct catttgtcat ttctagtttt
     3421 tgagctctta tattaagata atagtattta aaatcgctgt atttttgtat gaaagttttt
     3481 aaatatctag gtttgaaatc attaaaattt tcaacttcat aaaaaaatat tgccactaaa
     3541 ctttttgcaa ttcccactcc ataaatttct ccaaaactag aaaaaccaac tataggaaaa
     3601 tcattaaaat ggatttgatt taaatgttct ttgttgtgaa gccttcttaa gatacaatcg
     3661 ttaaaaattg ctcctagtgg ttttggttta ttaagagaaa atttttcata atcttttttt
     3721 atagcttcaa taaaatttgt ttttttaagc aagcttaatt cctgagcgct ttctatatca
     3781 caataactaa ataatgtttt atttgggttg atttccatag gggaaataag atagtcttct
     3841 ccaattttta aagcaaaagt atattcttgc attttatttt taagttcttc aaaagtgcag
     3901 ttaaaataat tacataaagc ttcaaccgga aaggtttttt attaatcaat tcgcgtacgg
     3961 ttttatcata taagcttaca tcaagtatgg taaaggtgat attgctttga ggattaaaat
     4021 tttgagactt cattaaatta aaacggtatt taggtttaaa ttgaacatgt atgcttaaag
     4081 cttgattttt taatatttct ccattataaa atataaatgc tccgctaaag tccatgtttc
     4141 cgctagaccc accccctact aaagcacaag gataggggtt gtgtttgtac aaaagttcta
     4201 aaagagaact ttcgctttga cttaaaccat cataaattaa ataatacaaa gtatttatgc
     4261 agtgtgcttc aaaaggtata tttataaata aaacttcttt ttctatcagt ttttttcttt
     4321 ctgtataatc ttttatatca ctaaaaagct tgattttatt tgtgcaaaga ttttctatca
     4381 tatcttcact aaaaagtatc aagcttattc cttggatatt ttgtttataa ggactgtttt
     4441 caatgtttga gttagaatca aggttgcata ataaatcagt agcactgctt aagatgatat
     4501 cacattgctc atttatagaa ttttgaatct tatttcctat gatcgctaga ttaagttgat
     4561 tgacacaaag cctataatta attttggctt gatgtttatt ttttttaatt tttcttcaag
     4621 ttcattttat tgaagatata gagcttctaa aactttttta cttcttcttt ttttgttgag
     4681 cttttatttt taaaattaaa aaaacatcaa ttttactcca ttaaaactat tttttaatta
     4741 ctagttaact aaatcaagac accataaatt cgacatttat ttgtaatttt tattatacct
     4801 taagtcataa aaaatgcaat aagtaaatta aaatttagat ataattgcaa attataataa
     4861 tattaattaa ggataaatta aatatgattg gagatatgaa tgagctttta ttaaaaagcg
     4921 ttgaagtatt gccaccttta cctgatactg taagtaagtt aagaaaatat gtgagcgagg
     4981 ctaattcaaa tatagaaact atgaaagttg ctgaaatcat ttcaagcgat ccgttgatga
     5041 cggctaagct tttgcaatta gcaaattctc cttattatgg ttttacaaga gaaattacaa
     5101 ccataaatca agtgattact ttattaggcg ttggtaatat catcaatata gttatggctg
     5161 actccattag agataatttt aaaatagacg tttcacctta tggtttaaat actcaaaatt
     5221 ttttaaaaac gtgcaatgaa gaggcaactt ttatcgcaaa ttggcttaat gatgaagata
     5281 aaaaactttc tcatctttta gttccttgtg caatgctttt aaggcttggt attgttattt
     5341 tttcaaattt tcttatacaa aatcataagg ataaggattt tttagctttt ttaaataaaa
     5401 atgaaaatct tgctttagcg gagaatgaat ttttaggcgt agatcatatt tctttcttgg
     5461 gatttttgtt acatcgttgg aattttgatg atgttttgat tgaaagtata tgttttgttc
     5521 gcactcctca tgctgctcgc gaaaaagtga aaaaatccgc ttatgcttta gcaataacag
     5581 atcatctttt tgctccgcat gatggttctt ctccatttaa cgcaaaagct gcagttgctt
     5641 tacttaaaga ggcaaaaact caaggaatta attttgattt aaacaatctt ttatctaagc
     5701 ttcctaacaa agctaaggaa aatttaaaca aagaagatta aagagccttt ttaaggctct
     5761 aaattgtagt gatgaaaagt ttaatcttac ctcctaatga atttttagat cactatattt
     5821 taaacgctga atttcatcgt tttgctggaa tttcaaaaaa tgcttataaa ttttggaaaa
     5881 atgcagaaat aggtagatat caaggaacaa gaattatatt tttgcataga aattgcattt
     5941 tagaaaaaca tcagcaagct ttaaggcaat gtagtggttt aaatggtttt gtattggcaa
     6001 gtgctttttg ttcttttact ggattagctc cctctcattt agtggaaaaa aataattctt
     6061 ctatttataa acttttagag cttaaggaaa tttgtgggat taaatttgtt aatttaaaaa
     6121 aattttatga ttttttaggg ctaaattatc atcagcatat ttatatagaa aaatgccatt
     6181 tttttagccc agctcctttt gaaaagcgta ttaaaatcac tgagagtatg tgcgttgggt
     6241 attattaaga taagaaaaaa taaatgcaca tagcaaagct ataatagcca aaaagaaaac
     6301 ataaagtccc aaagaaaaac gccaaaaatt acttaaatta tttaaggcaa aactatgcaa
     6361 gaaaaaagca agttgcggag ttaaacctcc agctatagca taagcaatat tatatgaaaa
     6421 agaaagtcct gaaaatttaa tttttgcatc aaatacttca ctcattatta aagggcaaaa
     6481 attcatcact ccgctaaaaa aacatacaag taaatataag caagctacta ggttaaaatc
     6541 agcattttgt ctatataaag tattaaaata aagcaagctt gcaattccaa aaaaaacact
     6601 aaaaaataca caagatttaa taacgcctat tttatccgct aaaattccac ttataataca
     6661 ccctaggcaa ataagcaaaa ttccacctat ttgaagatag gtttgtatag aagtattaat
     6721 ttgaagtatt tttgccatat aactaggcat aagcaaaatc attacaacaa tacaacctgt
     6781 caaaacccaa gtaatcatca tagaaagaac aattcccatt ttagcttttt taaacacttc
     6841 ttttaaagga aatttttcta aagccttgtc ttttttcatt tgttcaaaaa caggagtttc
     6901 tcttaaaaat tttctcaaat aagcagaaat aatcccaaaa attccaccta aaaagaatgg
     6961 aattctccaa gcccattcat gaagttcttc ttgggtataa attttattca taattaaaaa
     7021 aaccaaacta cctaataaaa ttccacctac aaccgaagcg gttaaaattc ccaaataagt
     7081 tcttttttga ccttgtggtg cgtgttcgta tacaaaaacc caagctccag ggagttcccc
     7141 gcctatagct ataccttgac aaatgcgtat aaaaactaaa agcacaatac aaagaaaacc
     7201 tatactttca taatttggaa taaaagctag agtaaaagtt ggaataacca ttaacaaaat
     7261 actaatcata aacattcttt tgcgtccaaa tttatctcca aaatgtgcca gtatcacacc
     7321 ccctaaagga cgtgctaaat atccagctgc aaatattcca taagtattaa acatttgcca
     7381 aaaactactt aaatcttttg gaaaaaagtt tgttgaaata taatttgcaa aaaatacaaa
     7441 aataataaaa tcataaaatt ctaaagttcc acctaatgat gaaagtccta aaacttttat
     7501 atctttttgg ttaagggttt tgctcattct taatccatct cataaaaatc atcatcattg
     7561 ttatcatcat cgtattcata atcatcatca tcgtaattat aatttttatg gtgattttgt
     7621 ggatattctt catcttcgtt ttcataatca tcgtaattta aatcttcttc atcttcataa
     7681 gccattgttt tctccttaaa taaaaataca aagcttattt tatcttaaat ttgtttggtt
     7741 ttgctataat ttttataatt ttttaaaagg tgaatttatg aaattaagtc atttagatga
     7801 aaaaaatcat cctaaaatgg tagatgtaag cgataaaaat attactttaa gaatagccac
     7861 agctagtggt ataatatata tgagtcaaga agcttttgat gtaattaaaa acaataccgc
     7921 aaaaaaaggt cctgttcttc aaacagctat tgttgcggct ataatggggg ttaaaaaaac
     7981 aagtgaaatt attcctatgt gccatccttt gatgctttct aaagttgaaa ctaatattgt
     8041 ggaatttgtt aaagaatgtg catttaagct tattgtaaca gttaagtgtg aaggtaaaac
     8101 aggtgttgaa atggaagctt taagtggagt tagtatagga cttttaacta tatatgatat
     8161 gatcaaggct atagataaat caatgagaat tacggatata gtgcttgaaa gcaaagaagg
     8221 aggtaaaagt ggtaaatttg tgcgatctta aaaaagaacc tcagatcaat tatcctactt
     8281 tttgggatta taaggtgatt tttgaggtgc atgttaaggc aagtgaaatt tttgaagaaa
     8341 ttttaggtca aagagaatat aaatttaaac attcgaattc aagtgcgagt ggaaaatatc
     8401 aaagttattt gttaaatgtt tatgttgata gcaaaaaaga tcgtttggat atatttgata
     8461 aattaaaagc taaagcaaaa tttgtacttt aagaaagaag gaaaaatgaa aaatacttta
     8521 attatttttg aaaattcttt atcaaatctc ggtaaagatg aagcaagtga tttacttgaa
     8581 gacttgagtt ttaatcttgc gtataagcaa atttcacata atcctcatga aacaaaaaaa
     8641 gttttaaatt ctcttttggt tgaattttta actattttga aaaaacttga tttttttgat
     8701 gatgaaaatg ttacaaaggt tatcaaagct ttggttaagg cgagtattgt agatgctcaa
     8761 aattcacttt atgagtatat tagcgaagct gaattattaa acaaacagat tgaaaatcaa
     8821 aagaatttga ttaaaaatca aatcagcgat aatttttttg aattcgagaa tattttacaa
     8881 gaatgttctt tttgtgatga atttagtggt ggtttaaatg atgctatttt atttgatata
     8941 gaaatgcttg gaattttaaa agaaaccgct gaaagtgctt ttttaactac attagaaaag
     9001 gctgaagata tagaacttac aagtagtgaa atagctaaaa atctcgtata taatgccatt
     9061 tgtgaagctc attttgaaaa agaaagaatt ttaaaaattt caagtattat tttaaatacc
     9121 gcttttgaaa tagctaatga atctatggct tatgcaaaag atctttgttt aggcgtgatt
     9181 aaaggcacaa gggatggtat tgttttggca atggaaaaat ttaaagcttc attaacttat
     9241 gcaaattttg aagaagatgt tagtttaaaa agcaaagaac taataggtat agaagatgat
     9301 tttattgctc ttttaaaaaa agagattcaa ttacaaaatg atccttgtaa gagtatagtt
     9361 gagaatttgc tagaacatga acttgataat ctttttgcta aatttagacg tcttgcaggt
     9421 gaaagcagag agcaactaat attagtttta aatgatatta agaaaaatcc aaagattaat
     9481 gattttaaca aacttactca aagaaaatta aatcgtttta aacaagaaat ttttgaatta
     9541 gaaaaaattg ctagtgaaaa atacaaagat ttaaattcca aaaaagctaa aaagctcggt
     9601 gtaagacttt gggaaaaagc aaaaaaattc gttaaaaaat aatatcccat ttttgggata
     9661 ttaaatatct atttctatac ctacaggtgc gtgatcagag ccaaaaatat catctcttat
     9721 gaaagcgttt ttaagtttat cttttaaacc ctttgaaatg aaaaaataat caatcctcca
     9781 gcctacattt ctttctcttg ctttcattct atagctccac cacgagtatt tttctttgat
     9841 ttcgccatta atttctctaa aagtatctat aaaaccaagc tttagcaaat catcaatcca
     9901 agctctttct ataggtaaaa aacctgaagt gttggcattg gcttttggat gagtaagatc
     9961 gatttcttta tgagcggtat tgacatcacc gcaaatgata atttcaaatc catcctttaa
    10021 aagcttatcc aaatacacta aaaaatctgc ataaaattgc atcttaaaat ttaaacgctc
    10081 ttcatctttt tgaccatttg gaaaatagat attaaaaagt gcaatatttt taaagcggtg
    10141 ttctaaaacc ctaccttctt catcatcaaa aaattcgcat ttttttactt cgctattaaa
    10201 attacaaaga ctcattaccc cagaataccc cgctctttta gcagaattaa aatacatgtg
    10261 tttaaaagga tattcataaa tttttttagg aaatttatct tcatgtgctt tgatttcttg
    10321 aaaacctata aaatcaattt gttcttgtgc tatccaatca agtgcatttt tatcacaaat
    10381 agctcttaag ccattgacat tccatgaaag tagtttcatt attttcctta aaattttcat
    10441 taaaagtgta aatcataaca taaaaagatt taaaactaca atccatttaa aaaaattcaa
    10501 taaaattaaa agcttaaatt tgaaggtggg atttatatgc ttagattaac ttggtttcag
    10561 tttacttttt ttaattcttt gatgattgta ttgttgaatt ttaatttatt ttattttgtg
    10621 tatgaaaaaa atacacaaaa ctggcttata acttttgttt ttattgtggc ctattttgca
    10681 cttgttcacg tgatttgctc tttgcttttt ataaagtttt ttactaaatt tttttctata
    10741 ttatttataa tatcatcttt tttaagtgtt tactttatta gtttttatgg ggtgcttata
    10801 gattctgata tgatgcaaaa tgttgttcaa acagacatta aagaagtaaa agatttgtta
    10861 aatttaaaat tgatcttatt tgttgttttg gctttattat tggtttttta tgttgttaaa
    10921 gtaaaaattg attattatgg tagttttaaa tcccatataa aaattaaaat tatcaatata
    10981 atatcaggtt tgattgttgt ttgtgcagtt ttaatccctt taagtaaaac tttcttgcct
    11041 ttttttagaa actataatga aataagaatg tataatactc ctttttatca aatttatgcc
    11101 gtatatcgct attatgttcg ttttgtaaaa gctaagccag aatttaaaac tatagctaat
    11161 gatgcttata gagaaaacaa tcacactaaa aaacttttgg ttttggtggt gggtgaaacc
    11221 gctagagcgg caaattactc tttgggtgga tatactaaaa atgataccaa tttttatacc
    11281 aaaaaagata atgtagtctt ttttgataat ttttcatcat gtggaacagc aacagcggta
    11341 agtttacctt gtatgttttc tatttctaag cgtgaaaatt attcaagttc agaatttcaa
    11401 gaaaatgcga tggatgtgct ttataaaaca ggtgtagatg ctgcatggtt tgataataat
    11461 tctggtggtt gtaaaggggt ttgtgataga ttagcttata agcaaaagct ttctagtgat
    11521 ttggatgaaa atttgctcgc tccttttaaa gaaaaattaa atcatttaag tgatcaaaat
    11581 ataatagttc ttcatttgca aggttctcat gggccaactt attataaacg ctatccaagt
    11641 gaatttaaaa aattcactcc aacttgtgat actaatgagc tttcaaaatg tgatagcgag
    11701 gctttaatca acacttatga taatactttg ctttatacag actatctttt aagtgagatt
    11761 ataaaactat taaaagagca aaaaagctat gaaagttctt tgttttatct ttcagatcat
    11821 ggtgaaagtt tgggtgaaaa tggtatttat cttcatggta tgccttatgc tatagcgcca
    11881 agttatcaaa cttatattcc tgctattttt tggagtaatg ataaaaattt aatgaattta
    11941 gctaaagagc ataaaggttt aaaactttct caagataatc tttttagcac tcttttagga
    12001 tattttgatg taaaaacaag tgtttatgag ccagaatatg atttattaaa ttctaaactt
    12061 aaggcaaatc catgaagcct aaatatcatt ttttaaataa tgcaagatat gctttagaag
    12121 ggttttttgc tttatttaaa aatgaaatgg cgtttagaat tgaactttgc attattatcc
    12181 ccgcggtagt ttttagtttt ttcttaaaag ttagtttttt ggagcatttg ttattggtaa
    12241 gtgtcttaat acttatctta attgtagaag ctttaaattc ggctattgaa gcttgtgttg
    12301 atttgattac aaatgaatgg catgaaaagg caaaaatcgc taaagattgt gcgagtgcgg
    12361 cagtgttttt tagtgtgctt ttagctcttt ttgtttgggg ctttatttta tataatattt
    12421 acttatgaaa tttgaaaatt taatacgaga aattttagga aaaaagcgtt ttgaattgtt
    12481 aaaattttta tgtgaaaatg ccgatgaaaa tggttttatt atgattaaaa tcagtgatct
    12541 tgaagaaaaa ttacatcaaa gtaaacctac catcatcgct acttttaagt ttttagaaga
    12601 aaaaaaactt tttaagcgtc ttaaaaatgg attttatcag ctaaatatag gagataaaaa
    12661 tgaaacttaa aaatctttta gatatgcatt tgcatttaag agataatcaa atgttagaac
    12721 ttattgcacc tttgagtgca agagattttt gtgcagctgt gattatgcca aatttaatcc
    12781 ctccgctttg caatttagaa gatctaaaag cttataaaat gcgtatcctt aaggcttgta
    12841 aagatgaaaa tttcactcct ttaatgacac ttttttttaa aaattatgat gagaaatttc
    12901 ttaaaagtgc caaagatgaa atttttggta ttaagcttta tccagcagga attacaacaa
    12961 attcaaatgg tggagtttca agttttgata tagagtattt aaaacctact ttagaggcta
    13021 tgagtgattt aaatattcct ttgctagtgc atggagaaac aaatgatttt gtaatggaca
    13081 gggaaagtaa ttttgctaaa atttatgaaa aattagccaa acattttcca cgacttaaga
    13141 ttgttatgga gcatattacc actaaaactt tatgtgaact tttaaaagat tatgaaaatt
    13201 tatacgcgac aatcacttta catcatttaa tcatcacttt agatgatgtt atcggaggta
    13261 aaatgaatcc tcatcttttt tgtaagccta tagccaagcg ttacgaagat aaagaagccc
    13321 tttgcgaact tgcttttagt ggttatgaaa aagttatgtt tggaagtgat agtgcgcctc
    13381 acccaagaga tactaaagag tgttgcggtt gtgctgcagg tgtatttagc gccccagtga
    13441 ttttacctgt tttagctgaa ttatttaagc aaaatagctc agaagaaaat ttgcaaaaat
    13501 ttttaagcga taatgcttgt aaaatttatg atttaaaatt taaagaagat aaaattttaa
    13561 ctttagaaga aaaagaatgg caagtgccaa atgtttatga agataaatac aatcaagtcg
    13621 tgccttatat ggccggagaa attttgaaat ttcaattaaa acattgattt tccaccttaa
    13681 aggtggaaaa tttaagcttt atttacaaga gcatctctga tatctataac aagatagatt
    13741 acaaaaaaac ttaaaaataa agcaataaaa ctgactatca gtgataataa accagctaaa
    13801 aatccgatgc taaacatcat aaaaagagaa taaagcaaag ctacaacaaa acttatcgct
    13861 gcaattgcat caagaatcaa gcgtccaaat ttgatgatta aatttttaac cattaaaaac
    13921 tcctttgaaa taatgagtaa aattgtaata aatatcagct taatattttt ataagtt
//
LOCUS       DAPIWJ010000041        13947 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.041, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000041 DAPIWJ010000000
VERSION     DAPIWJ010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13947
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.041"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            276..560
                     /gene="gatC"
                     /locus_tag="RJ259_000978"
     CDS             276..560
                     /gene="gatC"
                     /locus_tag="RJ259_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HDV7366697.1"
                     /translation="MQIDEKLLSKLEKLSALQITKNRNETIAQLSEIVNFVEKLNELD
                     LDSQEITVSTIKGGAPLRIDEIRNSNVIDEVLDCAPKKQEHFFVVPKIIE"
     gene            628..1191
                     /locus_tag="RJ259_000979"
     CDS             628..1191
                     /locus_tag="RJ259_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HDV7366698.1"
                     /translation="MNFYWFDAFILGFTLLLGLKGIINGLIKEIFGLLGIIGGVFIAS
                     KYATQAAEFIQSTFYKIENQSLAGFAGFLAILIIFWIACLLAGNFLSKLIKLSGLGFL
                     DRIGGFIFGGAKIFLIFAILVFCVARIDFLNDKLDNFAKNSYTLNLLKETGSFIMNQP
                     LTENSLDHASEKLQDIVSDLNNTQKGE"
     gene            1193..1666
                     /locus_tag="RJ259_000980"
     CDS             1193..1666
                     /locus_tag="RJ259_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HDV7366699.1"
                     /translation="MLIENVEYDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHY
                     TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDH
                     MICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQLYGVCGDCNNQKAKVKI"
     gene            1667..3172
                     /gene="lysS"
                     /locus_tag="RJ259_000981"
     CDS             1667..3172
                     /gene="lysS"
                     /locus_tag="RJ259_000981"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HDV7366700.1"
                     /translation="MFDNILEQQRIEKAKELKNLGINPYPHFLEKEMSLKTFKDKFSY
                     ILEQVEKRDESVNAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFSKDSVGEELYTIL
                     KKNLEVGDIVLVKGFPFVTKTGEFSLHASEVKLATKAIVPLPEKYHGLTDIEQRYRKR
                     YVDMIMNVEVRKDFLVRSKVVSLIRHFFENKGFLEVETPMMHPIAGGANAKPFVTFHN
                     SLGVERFLRIAPELYLKRLIVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHN
                     YKDLMDLTEELFALLLDKLNLGKTIEFDGKMINFSKPFERITYKDALCKYGGLDRDLI
                     EDKEKILTKLKADGFEANEKLELGHLQAELFDNYVEEKLINPTFVIDFPISISPLSRR
                     SDEDSQIAERFELFICGRELANGFNELNDPLDQYERFLKQIEAKNAGDEEACEMDEDF
                     VNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMRPLKSELKEKE"
     gene            3169..4413
                     /locus_tag="RJ259_000982"
     CDS             3169..4413
                     /locus_tag="RJ259_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HDV7366701.1"
                     /translation="MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGS
                     ILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYA
                     ALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE
                     KPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVV
                     SSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDE
                     WKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAG
                     ITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDVNNEKLQ
                     ENIKQELKKLASNFIIYERAMF"
     gene            4410..4955
                     /locus_tag="RJ259_000983"
     CDS             4410..4955
                     /locus_tag="RJ259_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HDV7366702.1"
                     /translation="MISPMDMSLIKIIGDHYYIRRDKIVNKITHRGRLFFDKFERVDA
                     PLNLNVMREHAAKKIVVAHDLITKDNKVENIVFDYNGFNAERFYHRAQLILREEGFIN
                     FTAYKTKTPGHLHLYIHKGHTALNEGYSLASKLSMMFASKMPVEWKVFPSMDVPREFN
                     ILILPYEVYQKERGSSWSKHM"
     gene            4969..5805
                     /locus_tag="RJ259_000984"
     CDS             4969..5805
                     /locus_tag="RJ259_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HDV7366703.1"
                     /translation="MENQKNEFDDIILEKSNKSEKVKKILLRVIALVILFLAIMIVMK
                     LINGSGDENTQNQSVLPSEPIATQDNNNDTSFESMPITDNTSAEDQFEALRKQFQDEQ
                     NTTQNTTTSSSNNNDTTNFAMPDQEVPAEPTATTSANTTPQASTPKQEVTQTAKSKEE
                     AKKQTAVKKEKESAKQTPKKEQNANDLFKNVDAKPVHPSGLASGIYVQIFSVSNLDQK
                     SKELASVKQKGYDYKLYKTTVGSKEITKVLIGPFEKADIAAELAKIRKDIAKDAFSFT
                     LK"
     gene            5802..6590
                     /locus_tag="RJ259_000985"
     CDS             5802..6590
                     /locus_tag="RJ259_000985"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HDV7366704.1"
                     /translation="MKFLAVIGDPISHSKSPRMHNNAIKALGLDSIYTRYHLRNANCL
                     REDFFKLGLSGANITLPFKEKALDIADVKDDFARNIGSANTLCLKEDKIYAYNTDALG
                     FLEAIKDFDNIKKALILGAGGTALALAYALKQKGVEVYIANRSKERFKDFLAYPTYLY
                     KNLQDFDFDLVINSTSAGLKDENLPCDRELLDRILPKAKFAFEVIYGRETPFYRLCKE
                     YHLKIKDGLDMLLWQGVFAFELFFEIQDKREMIKNAMQQALILK"
     gene            complement(6665..7564)
                     /locus_tag="RJ259_000986"
     CDS             complement(6665..7564)
                     /locus_tag="RJ259_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7366705.1"
                     /translation="MKKYILLASSMLILAACGGTSSNFVNVSMPNFKPQVPTKVEPID
                     SGVSIALVPINIEQNNNYSDYFENSVLKIRIEKEIDLLKQNLEEQIKTIAQLKGYKIV
                     TTNPDYTLKSSISIYTEEKNVQKTSNFMSGDYVKSNLGINFKGKIDFIDAHNPQNSTN
                     LSSSTKLDSLVALNYPIKNDDGVNMFKTTISTVPTQLNKGLEQPAFEIDKSFLAFYKN
                     TLNTLYNNLPKATDIGKTIPNTNSGFNSFDGDATFEESLPQTNSNQNNTIENAPTQNI
                     PTNPSSTNQNNQSKNQDGVEIFE"
     gene            7654..8469
                     /locus_tag="RJ259_000987"
     CDS             7654..8469
                     /locus_tag="RJ259_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HDV7366706.1"
                     /translation="MEFWQHIYSNFNVIAFSIFGLKVHWYGIMYVIALLLALLLAKFF
                     VRKFQLDINEKHLDSYFIWVEIGVILGARLGYILIYDANTMYYITHPWQIFNPYINGE
                     FVGIRGMSYHGAIIGFLIATLLFCKKYKTNPWIFLDLVALSVPLAYVFGRIGNFLNQE
                     LFGRITNVPWGIYVDGVLRHPSQLYEAFLEGIVVFIIVYLARFKQSFQGELILVYAGA
                     YSLARFICEFYREPDFGIGFVLWGMSMGQILSFIMFITALLVYICIKFKKVNI"
     gene            8539..9321
                     /locus_tag="RJ259_000988"
     CDS             8539..9321
                     /locus_tag="RJ259_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HDV7366707.1"
                     /translation="MRELIEGYLGKSIEGKKSKMPAKLDFIQSASGLFLGLFMWVHML
                     FVSTILVSEDFFNSVVHFLELKFVYDNPVMSYLTSFLAACVLVVFFVHALLAMRKFPI
                     NYRQYQILRTHSKKMNHSDTSLWWVQAFTGFIMFFLGSAHLIFIVTNADKISGDMSGD
                     RVVSHFMWLFYAVLLVCVELHGSIGLYRLCVKWGWFEGKNVKESRKKLKTAKWIISIF
                     FLVLGVLSLAAFIKIGYENYQNQTKTTAMIKNYNGANYEYTI"
     gene            9305..11296
                     /locus_tag="RJ259_000989"
     CDS             9305..11296
                     /locus_tag="RJ259_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HDV7366708.1"
                     /translation="MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHS
                     AAVQGGMQASLANGAKGEGDNEDLHFADTVKGSDWGCDQEVARMFAQTAPKAVRELAA
                     WGVPWTRVTKGPRTVVINAQKTVIEEKEEAHGLINARDFGGTKKWRTCYIADATGHCM
                     LYGVANEAIKHQVKIIDRMEAVRIIHDGKKCLGVIARDLTNGQLIAYIARGTMIATGG
                     YGRIYKQTTNAVICEGTGAAIALETGLCRLSNMEAVQFHPTPIVPSGILLTEGCRGDG
                     GILRDVDGYRFMPDYEPEKKELASRDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILG
                     RAHVEKNLRDVQDICKTFNGIDPADEGPKGWAPVLPMQHYSMGGIRTKPTGESQWLNG
                     LFACGEAACWDMHGFNRLGGNSCAETVVAGMIVGDYFADYCKNNGEVIDTNVVKDFLT
                     KEYQYLKSLVDKEGKHNVFEIKNRMKEIMWDKVAIFRTGEGLKEAVDELEKLYKDSQD
                     VKVHCKELDCANPELEEAYRVPRMLKIALCVAYGALLRTESRGAHYREDYPKRDDLNW
                     MKRTNTFWVEGETLPRIEYEELDIMKMEIPPAFRGYGAKGNIIENPLSEKRQAEVDAI
                     REKMEAEGKGRYEIQNALMPYELQAKYKAPNQRIGVDYE"
     gene            11289..12014
                     /locus_tag="RJ259_000990"
     CDS             11289..12014
                     /locus_tag="RJ259_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HDV7366709.1"
                     /translation="MSRKLTIKAFKYNPLSKISKPHFVTYELEETPFMTVFVCLTLIR
                     EKMDADLSFDFVCRAGICGSCAMMINGVPKLACKTLTKDYPDGVIELMPMPAFRHIKD
                     LSVNTGEWFEDMCKRVESWVHNEKETDISKLEERIEPEVADETFELDRCIECGICVAS
                     CATKLMRPNFIAATGLLRTARYLQDPHDHRSVEDFYELVGDDDGVFGCMSLLACEDNC
                     PKELPLQSKIAYMRRQLVAQRNK"
     gene            12042..>13947
                     /locus_tag="RJ259_000991"
     CDS             12042..>13947
                     /locus_tag="RJ259_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HDV7366710.1"
                     /translation="MKELFQKIWQNELQFLNFDAKFQDKSKLDTAECAIILSVNKDNY
                     ERYFLLKEFQELCKKIDLRVDIFSMQNAQICILNLFKSGFISKQDLLKALKILEKISK
                     NTEIFDFILQEKVQSIDQKALFQNDFKELNTINLELQKLSFDENLKSRLQKTLEKFQN
                     LEFNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETANLTVLSYGKSEEAKIYFWDKK
                     EWQNILESSHFNADLKEFIDKLDKSVNIEDFIKDKPLIQNIALCELKNFSSAKNKISA
                     LIKKIEIKSHLEFLKNNISIVDTPGLDDVVVQREIVTNEYLRESDFLIHLMNASQSLT
                     QKDADFLVHCLLNSRLSKFLIVLTKADLLSKKDLEEVIVYTKESLKSRLVDLDENLVE
                     KIDFLCVSAKMASDFYKGLASKESLQKSGMQEFENYLFNELYAGEKSKIALRAYKKEL
                     HLELKNILSEYEMQNRLIKENKQGVSEENQKLLLELQKQNTLLKEAQDEISNSIAKLK
                     NIDSGIDNLVLLLAKKLKERLIDEFKYLKNNAQKLNLSRILNIVDITTKDGINDILRE
                     IKFENIKKIEELKTNLSLKYDFLKDDFDNGFEGFKDGISKNIDSIFQSEKFALLRLKI
                     EKLSNLKSDLY"
BASE COUNT         4919 a         1650 c         2656 g         4722 t
ORIGIN      
        1 aattatcaca acagcagata tataaaattt atacttgcgt ataaatctct ctcctttgat
       61 aaaattttct ataaattgtt cttctgtgtt aagttcattt ttaacagctt ttaaattatc
      121 ttttagtccc aaaatttatc cttgaaaaaa tatttttatt tttgtataga aaaattatag
      181 tattgtatca tataaattgc aaaatatcct aaacaattta aagcttttta tgatataatt
      241 ttcaaaattt taactttttt attaaggttt aagaaatgca aatagatgag aaattattaa
      301 gcaagcttga aaaattaagt gctttacaaa taacaaaaaa cagaaatgaa accattgcac
      361 agttaagtga aattgtgaat tttgttgaaa aattaaacga acttgatcta gattcccaag
      421 agattactgt gagtactata aaaggtggag ctcctttgag gattgatgag ataagaaata
      481 gcaatgttat tgatgaggtt ttggattgtg ctccaaaaaa acaagaacat ttttttgttg
      541 ttcctaaaat catagaatga ttaacttagc atttagtgct tatttgtaga ataaatttaa
      601 aacaaaaaaa atcagagagt gattgaaatg aatttttatt ggtttgatgc ttttatttta
      661 ggatttacct tgcttttagg gcttaagggt attatcaatg gtttgataaa agaaattttt
      721 gggcttttgg gtattattgg tggtgttttt attgcttcaa aatatgcaac tcaagcagct
      781 gaatttatac aaagtacttt ttataagata gaaaatcaaa gcttagctgg atttgctgga
      841 tttttggcca tattaattat tttttggata gcttgtttgt tggcaggtaa ttttctttct
      901 aagttgatta aattaagtgg cctaggtttt ttagatcgta ttggtggctt tatatttggc
      961 ggggcaaaaa tctttttaat ttttgcaatt ttagtttttt gtgtagcaag aatcgatttt
     1021 ttaaatgata aattagataa ttttgctaaa aatagctata ctttgaattt gcttaaagaa
     1081 actggatctt ttattatgaa tcaaccttta acagaaaata gtctagatca tgctagtgaa
     1141 aagttgcaag atattgtaag tgatttaaac aatactcaaa aaggggagtg atatgctgat
     1201 agaaaatgtg gaatatgatg ttttacttga gagatttaaa aaaatattaa gacaaggcgg
     1261 acttaaatat actaagcaaa gagaagtgct tttaaaaact ctttatcaca gtgatactca
     1321 ttacacaccc gaaagtttat atatggaaat caaacaagct gaacctgatt taaatgtagg
     1381 aattgcaact gtttatcgta ctttaaattt gcttgaagaa gcagaaatgg taacttccat
     1441 ttcttttggt tcagcaggta aaaaatacga gcttgccaat aaacctcacc atgatcatat
     1501 gatatgtaaa aattgcggaa aaattataga atttgaaaat cctattatag aaagacagca
     1561 agccttgatt gcaaaagaac atggttttaa acttacaggg catttgatgc agctttatgg
     1621 tgtttgtggt gattgtaata atcaaaaagc aaaggtaaaa atataaatgt ttgataatat
     1681 tttagagcag caaagaatag aaaaagctaa ggaattaaaa aatttaggga tcaatcctta
     1741 tcctcatttt ttagaaaaag aaatgtcttt aaagactttt aaggataaat tttcttatat
     1801 tttagagcaa gttgaaaaaa gagatgaaag tgtcaatgct gttgttgcag gacgtttgaa
     1861 acttttgcgt atagctggga aatcgatttt tgcaaacatt gaagatgagg atacaaattt
     1921 acaaatttat tttagtaaag atagcgtagg cgaagagctt tatacgattt taaaaaagaa
     1981 tttagaggtg ggtgatattg ttttggttaa aggttttcct tttgtaacta aaacaggtga
     2041 gtttagttta catgcaagtg aagtaaaact cgctacaaaa gctattgttc ctttacctga
     2101 aaaatatcat ggattaacag atattgagca aagatatcgt aaacgttatg ttgatatgat
     2161 aatgaatgtc gaagttagaa aagatttttt agtgcgttct aaagtggtga gtttaatccg
     2221 tcattttttt gaaaataaag gctttttaga agtagaaact cctatgatgc atccgattgc
     2281 aggtggagca aacgctaagc cttttgtaac ttttcataat tctttaggcg tagaaagatt
     2341 tttaagaatt gctccagaac tttatcttaa aagacttata gtaggtggtt ttgaggcggt
     2401 ttttgaaatc aatcgttgtt ttagaaacga aggtatggat ttaactcata atcccgaatt
     2461 tacaactata gaattttatt gggcctatca taattataaa gatttaatgg atttaaccga
     2521 agaacttttt gctttacttt tggataaact taatttagga aaaacaatag aatttgatgg
     2581 aaaaatgata aatttttcta aaccttttga aagaataacc tataaagacg cactttgtaa
     2641 gtatggtggt ttagataggg atttaatcga agataaggaa aaaattctta ctaaattaaa
     2701 agcagatggt tttgaagcga atgaaaagct tgaacttgga catttgcaag ctgaactttt
     2761 tgacaattat gtggaagaaa aattgatcaa tcctactttt gtgattgatt ttcctatttc
     2821 cataagtcct ttatcaagac gtagcgatga ggattctcag attgctgaga gatttgagtt
     2881 gtttatttgc ggaagagaat tggcaaatgg ttttaatgag cttaatgatc ctcttgatca
     2941 atatgagaga tttttaaaac aaattgaagc taaaaatgca ggcgatgaag aggcttgtga
     3001 aatggatgaa gattttgtaa atgctttggg ttatggaatg cctccaacgg cagggcaggg
     3061 cataggtata gatagacttg ttatgctttt gacaaataaa aaatccattc gtgatgtgat
     3121 attgtttcct gcaatgcgtc cattaaaatc agaactaaag gagaaagaat gagtttagaa
     3181 atgtttgata aagaaatttt tgatttaaca aacaaagagt tagagcgtca atgtgaaggt
     3241 cttgaaatga tagcgagtga aaatttcact ttacctgaag taatggaagt tatgggaagt
     3301 atcttgacaa acaaatacgc agaaggttat ccgggtaaaa gatattatgg tggttgtgaa
     3361 tttgttgatg agattgaaac tctagctatt gaaagatgta aaaaactttt taattgtaaa
     3421 tttgctaatg ttcagcctaa ttcaggttct caagctaatc aaggtgttta tgcggctttg
     3481 attaatccag gtgataaaat tttaggaatg gatttaagtc atggcggaca tttaactcat
     3541 ggtgcaaaag taagttcttc gggcaaaatg tatgaaagct gtttttacgg cgtagaactt
     3601 gatggaagaa ttgattatga aaaagtaaga gaaattgcta aaaaagaaaa accaaaactt
     3661 atagtttgtg gagctagtgc ttatgcaaga gtgattgatt ttgctaaatt tagagaaatt
     3721 gctgatgaaa taggtgccta tctttttgct gatatagcac atattgcagg tcttgttgtg
     3781 gcaggtgagc atccaagtcc ttttccatac gctcatgtag taagctcaac tacacataaa
     3841 actttgcgtg gcccaagagg tggtattatt atgacaaatg atgaagagct tgctaaaaaa
     3901 attaattctg ccatttttcc aggtattcaa ggtggtcctt tgatgcatgt aattgctgca
     3961 aaagcagtag gatttaaatt taatcttagc gatgagtgga aagtttatgc aaaacaagta
     4021 agaactaatg ctcaagtttt agctaatgtt ttaatggata gaaaatttaa acttgttagc
     4081 gatggaacgg ataatcacct tgttttaatg agttttttag atcgtgaatt tagtggaaaa
     4141 gatgcagatt tagctcttgg aaatgcaggt attactgcaa ataaaaatac cgttccagga
     4201 gagattagaa gtccttttat cacaagtgga ttaagacttg gaactccagc ccttactgcc
     4261 agaggtttta aagaaaaaga aatggaaatt gtgtcaaatt atattgcaga tattttagat
     4321 gatgttaata atgaaaaatt acaagagaat attaaacaag aattaaaaaa acttgcaagt
     4381 aattttatta tttatgaaag ggctatgttt tgatttcacc aatggatatg tcgctaatta
     4441 aaataattgg cgatcattat tatataagac gtgataaaat tgtaaataaa attacacata
     4501 gaggtcgctt attttttgat aaatttgaaa gagttgatgc tcctttaaat ttaaatgtca
     4561 tgagagaaca cgctgctaaa aaaattgttg tcgctcatga tttaataaca aaagataata
     4621 aagtagaaaa tattgtcttt gattataatg gttttaatgc tgaaagattt tatcaccgtg
     4681 cacaacttat tttaagagaa gaaggtttta taaatttcac agcctataag actaaaactc
     4741 caggacattt acatctttat attcacaaag gacacacggc gttaaacgaa ggttattctt
     4801 tagcgtctaa actttcaatg atgtttgcaa gtaaaatgcc agtagaatgg aaggtgtttc
     4861 ctagcatgga tgtacctagg gaatttaata ttttaatatt gccttatgag gtttatcaaa
     4921 aagaacgagg aagttcttgg tctaagcata tgtaagaaag gacaaattat ggaaaatcaa
     4981 aaaaatgaat ttgatgatat tattttagaa aaaagtaata aaagtgaaaa agtaaaaaaa
     5041 attcttttac gagttattgc tttagttatt ttgtttttag ctatcatgat agttatgaag
     5101 cttattaatg gtagtggtga tgaaaatacg caaaatcaaa gtgtattgcc aagtgaacct
     5161 atagcaactc aagacaataa caatgatact tcttttgaaa gtatgccaat tacagataat
     5221 acttcagcag aagatcaatt tgaggcatta agaaaacaat ttcaagatga acaaaataca
     5281 actcaaaata caacaacctc tagttcaaat aacaatgata ctacaaattt tgctatgcct
     5341 gatcaagaag ttccagcaga accaacagca actacttcag caaataccac tccacaagca
     5401 agtactccta aacaagaagt aacacaaact gcaaaatcta aagaagaagc aaaaaaacaa
     5461 acagctgtaa aaaaagaaaa agaaagtgca aaacaaaccc ctaaaaaaga acaaaatgca
     5521 aatgatttat ttaaaaatgt tgatgctaaa cctgtacatc caagtggttt agcatcgggt
     5581 atttatgtgc aaattttctc agtaagtaat ttggatcaaa aatcaaaaga acttgcttct
     5641 gtaaagcaaa aaggttatga ttataaactt tataaaacta cagttggaag taaagaaatt
     5701 accaaggttt taataggacc atttgaaaag gcagatattg cagcagaact tgctaaaatc
     5761 cgtaaggata ttgcaaaaga tgctttttct tttactttaa aatgaaattt ttagcagtta
     5821 taggcgatcc tatttctcac tctaaatcgc ctagaatgca taataatgct attaaagcct
     5881 tagggcttga tagcatttat acacgctatc atttaagaaa tgctaactgt ttaagagaag
     5941 atttttttaa attaggactt agtggagcta atattacttt gccttttaag gaaaaagctt
     6001 tagatattgc tgatgtgaag gatgattttg ctagaaatat tggctctgca aatactttat
     6061 gcttaaaaga agataaaatt tacgcttata atactgatgc tttaggtttt ttagaagcta
     6121 ttaaggattt tgataatata aaaaaagctt tgattttggg tgctggaggt acagctttgg
     6181 cgcttgctta tgcattaaaa caaaaaggcg tagaagtgta tatagctaat cgtagtaaag
     6241 aaagatttaa agatttttta gcttatccaa cttatcttta taaaaacttg caagattttg
     6301 actttgattt ggttataaat tcaacttctg ctggattaaa agatgaaaat ttaccttgtg
     6361 atagggagct tttagataga attttaccta aagctaaatt tgcttttgag gtaatttatg
     6421 gcagagaaac acctttttat agattgtgta aagagtatca tttaaaaatt aaagatggac
     6481 ttgatatgct tttatggcaa ggagtttttg cttttgaact tttttttgaa atacaagata
     6541 aaagagagat gataaaaaat gcaatgcaac aggcattgat tttaaagtag aatgatagtt
     6601 atttttcttg tataagaaaa tcttattttt tgtgtgagaa agtttaattt tcccacaagt
     6661 tttatcattc aaatatttct accccatctt gatttttact ttgattattt tgatttgttg
     6721 aagatggatt tgtaggaata ttttgtgtag gcgcgttttc aattgtatta ttttgattag
     6781 aatttgtttg aggtaagctt tcttcaaagg tagcatcgcc atcaaaacta ttaaaaccac
     6841 tgtttgtatt aggtatagtt ttgcctatgt ctgttgcttt tggtagattg ttataaagtg
     6901 tatttaatgt atttttataa aaagctaaaa aacttttatc aatttcaaaa gcaggttgct
     6961 ctaaaccttt attgagttga gttggtacgg tagagatagt agttttaaac atattaaccc
     7021 catcatcatt tttaatagga tagttaagcg caactaaaga atctagttta gtgctacttg
     7081 aaagattggt tgaattttgt ggattgtgtg catctataaa atctatttta cctttaaaat
     7141 ttatacctaa attggatttt acataatctc cactcataaa attgcttgtt ttttgtacat
     7201 ttttttcttc cgtataaata ctgattgaac ttttaagagt gtagtctgga ttagtagtaa
     7261 ctattttata gccttttagt tgagcgatgg ttttgatctg ctcttctaaa ttttgtttta
     7321 aaagatcaat ttctttttct atgcgaattt taagcactga attttcaaaa taatcagaat
     7381 aattgttatt ttgttctata ttaataggca caagagcaat gcttactcca gaatcaatag
     7441 gttcaacctt tgttggaact tggggtttaa aatttggcat agaaacattg acaaaattac
     7501 tacttgtacc cccacaagct gctaaaatta acatactact agcaagtaaa atatattttt
     7561 tcatttttta cctttattta atgtgtttgt gttaattata gcaagttaaa gtttttttgt
     7621 tatattttta taaaagaaaa ttaggaaaga tatatggaat tttggcagca tatttattca
     7681 aattttaatg ttatagcttt tagcatcttt ggtttaaagg tgcattggta tggcattatg
     7741 tatgttatag ctttgctttt ggctttgctt ttggctaaat tttttgtaag aaaatttcaa
     7801 ctagacatta atgaaaaaca tttggatagt tattttatat gggttgaaat aggggttatt
     7861 ttaggtgcaa gacttggata tattttgatt tatgatgcaa atactatgta ttatattact
     7921 catccttggc aaatttttaa tccttatatt aatggtgaat ttgtaggtat tcgaggtatg
     7981 agttatcatg gagcaattat aggatttttg atagctactt tattgttttg taaaaaatat
     8041 aaaacaaatc cttggatttt tcttgatttg gttgctttaa gtgttccatt ggcttatgtt
     8101 tttggtcgta taggaaattt tttaaatcaa gagctttttg gtcgcattac aaatgtgcct
     8161 tggggaattt atgttgatgg agtattgcgc catccatcgc aactttatga agcattttta
     8221 gaaggtattg ttgtttttat tatagtttat ttagcaagat ttaagcaaag ctttcaaggg
     8281 gaattgattc ttgtgtatgc tggtgcttat tcattggcaa gatttatatg tgaattttat
     8341 cgcgagcctg attttggtat aggttttgtt ttatggggta tgagtatggg gcaaatttta
     8401 agttttataa tgtttataac agctttgtta gtttatattt gtataaagtt taaaaaagta
     8461 aatatttaat ctatcttaaa gacttttgta atataatgaa atggattttt tttaatttct
     8521 ttttacaaag gagtaaagat gcgtgagctt atcgaaggtt atttgggtaa gagcattgag
     8581 ggcaaaaaaa gtaaaatgcc tgcgaaatta gactttatcc aaagtgcttc agggcttttt
     8641 ttaggtcttt ttatgtgggt gcatatgctt tttgtttcta caattttagt cagtgaggat
     8701 ttttttaatt ctgtagtgca ttttttagaa ttaaaatttg tttacgataa tcctgttatg
     8761 agttatctta cttcattttt agccgcctgt gttttagtgg tttttttcgt tcatgcttta
     8821 cttgcaatga gaaaatttcc tattaattac cgtcagtatc aaatactaag aacacacagt
     8881 aaaaaaatga atcacagcga tacttcgtta tggtgggttc aagcttttac aggttttatt
     8941 atgtttttct taggttctgc tcatcttatt tttattgtaa ccaatgcaga taaaatcagc
     9001 ggcgatatgt caggagatag ggttgtaagt cattttatgt ggctttttta tgctgttctt
     9061 ttagtctgtg ttgaacttca tggaagtata gggctttata gactttgtgt taaatggggt
     9121 tggtttgaag gaaaaaatgt aaaagaaagt cgcaaaaagc ttaaaactgc taaatggata
     9181 atcagtattt tcttcctagt tttaggtgtg ttaagtcttg cagcatttat aaaaataggt
     9241 tatgaaaact accaaaatca aaccaaaact actgcgatga taaaaaacta caatggagca
     9301 aattatgaat atacaatata gtgatgcttt agtaataggc ggaggattag caggtcttag
     9361 agcggctatt gaagtagcaa agagtggcca aagtgtaaca cttttaagta tttgtccagt
     9421 gaagcgttct cactctgcag cggtgcaagg aggtatgcag gcaagtttag caaatggggc
     9481 aaaaggtgag ggtgataatg aagatcttca ctttgcagat acagtaaaag gaagtgattg
     9541 gggctgtgat caagaagtag caagaatgtt tgctcaaact gcgccaaaag cagtgcgtga
     9601 gcttgcggct tggggtgtgc cttggactag agttactaaa ggtccaagaa ctgttgtaat
     9661 caatgcacaa aaaactgtga ttgaagaaaa agaagaagcg cacgggctta ttaatgctag
     9721 agattttggt ggaactaaaa aatggagaac ttgctatatc gcagatgcaa cagggcattg
     9781 tatgctttat ggtgtagcaa atgaagctat taaacatcaa gtaaaaatta ttgatagaat
     9841 ggaagcagta agaattatcc atgatggtaa aaaatgctta ggtgtgatcg ctagagattt
     9901 aactaatgga caactcattg cttatattgc aagaggaacc atgatagcaa cagggggcta
     9961 tggtagaatt tataaacaaa ctacaaatgc ggtaatttgt gaaggaacag gtgcagccat
    10021 cgctcttgaa acagggcttt gcagactttc aaatatggaa gcagtgcaat ttcatccaac
    10081 tcctattgtg ccaagcggta ttttgcttac tgagggctgt cgtggtgatg gtggaatttt
    10141 acgcgatgtg gatggatatc gttttatgcc tgattatgaa ccagagaaaa aagaacttgc
    10201 aagccgtgat gtggtaagtc gtagaatgat ggaacatatt cgtaaaggca aaggtgtaaa
    10261 aagcccttat ggggatcatt tatggcttga tatttctata cttggaagag ctcatgtgga
    10321 aaaaaatctc cgcgatgtac aagatatttg taaaactttt aatggtattg atccagcaga
    10381 tgagggtcca aaaggttggg cgccagttct tccaatgcag cattattcta tgggtggaat
    10441 tagaactaaa ccaacgggtg aaagtcaatg gttaaacgga ctttttgctt gtggagaagc
    10501 agcttgctgg gatatgcacg gatttaatcg tttaggtggg aattcatgtg ctgaaactgt
    10561 tgtagcaggt atgatagtgg gagattattt tgcagattat tgtaaaaata atggtgaagt
    10621 aattgacaca aatgtagtaa aagacttctt aactaaagag tatcaatatt taaaatcttt
    10681 agtagataaa gaaggtaaac ataatgtttt tgaaatcaaa aacagaatga aagaaatcat
    10741 gtgggataag gtggccatct ttagaacagg tgaaggtttg aaagaagcag tagatgaact
    10801 tgaaaaactt tataaagatt ctcaagacgt taaagtacat tgtaaagaac ttgattgtgc
    10861 aaatccagag cttgaagaag cgtatagagt gccaagaatg ttaaaaatag cactttgcgt
    10921 agcttatgga gcgcttttaa gaacagaaag tcgtggggcg cattataggg aagattatcc
    10981 aaaaagagat gatttaaatt ggatgaaaag aaccaatact ttttgggtag aaggcgaaac
    11041 cttaccacgc atagaatacg aagagcttga tattatgaaa atggaaattc caccagcatt
    11101 ccgtggatac ggtgctaaag gaaatattat agaaaatcct ttaagtgaaa aacgccaagc
    11161 tgaagtggat gctatccgtg aaaaaatgga agctgaaggc aaaggtcgtt atgaaattca
    11221 aaacgcctta atgccttatg aattgcaagc taaatataaa gcaccaaacc aaagaatagg
    11281 agttgattat gagtagaaaa ttgacaataa aggcatttaa atacaatcct ttaagcaaaa
    11341 tttctaaacc acattttgtg acttatgagc ttgaagaaac tccttttatg acggtttttg
    11401 tatgtttgac tttgatccgt gaaaaaatgg atgcagatct gagttttgac tttgtttgtc
    11461 gtgcagggat ttgcggatct tgtgcaatga tgattaatgg agtgccaaaa cttgcttgta
    11521 aaactttgac taaagattat cctgatggag tgatagagct tatgcctatg cctgcattta
    11581 ggcatattaa agatttaagc gtgaatacag gcgagtggtt tgaagacatg tgtaagcgtg
    11641 ttgaaagctg ggtgcataat gaaaaagaaa ctgatatttc taaacttgaa gaacgcattg
    11701 agccagaagt tgcggatgaa acttttgaac ttgatcgttg tatagagtgt ggaatttgtg
    11761 tagcttcttg tgcaactaaa cttatgcgcc caaatttcat agctgctaca gggcttttaa
    11821 gaacagctag atatttacaa gatccgcatg accatagaag tgtggaagat ttttatgaat
    11881 tagtaggcga tgatgatggt gtttttggtt gtatgtcatt gcttgcttgt gaagataatt
    11941 gccctaaaga attaccttta caaagtaaaa tcgcttatat gagaagacaa cttgtcgctc
    12001 aaagaaataa ataaatcttt ccccttttta aggggaagat tgtgaaagaa ttattccaaa
    12061 aaatttggca aaatgaactc caatttttaa attttgatgc taaatttcaa gataaaagca
    12121 aacttgatac agccgagtgt gcgattattt taagtgtcaa taaagacaat tatgaaagat
    12181 attttctctt aaaagaattt caagagcttt gcaaaaaaat tgatttaaga gtggatattt
    12241 ttagtatgca aaatgctcaa atttgtattt taaatctttt taaatcaggt tttatttcaa
    12301 agcaagattt acttaaggct ctaaaaattt tagaaaaaat ttcgaaaaat accgaaatat
    12361 ttgattttat tttacaagaa aaagttcaaa gtatagatca aaaagcttta tttcaaaatg
    12421 attttaaaga attaaacacc attaatttag agcttcaaaa gctaagtttt gatgaaaatt
    12481 taaaatcaag acttcaaaaa actttggaaa aatttcaaaa tttagagttt aatatagcca
    12541 tcactggcgt gatgaatgca ggaaaatcaa gtcttttaaa tgctctttta aaagaagatt
    12601 ttttaggggt ttcaaacata cctgaaacag ctaatttaac agtattaagc tatggtaaga
    12661 gtgaagaagc aaagatatat ttttgggata aaaaagaatg gcaaaatata cttgaaagtt
    12721 cgcactttaa tgcagattta aaagaattta ttgataagct ggataagagt gtaaatatag
    12781 aagattttat taaagataaa cctttgatac aaaatatcgc actttgtgag cttaaaaatt
    12841 tcagttctgc taaaaataaa atttcagctt taattaaaaa aatagaaatt aaaagtcatt
    12901 tagaattttt aaaaaataat atttctatag ttgatactcc agggcttgat gatgttgtag
    12961 ttcaaagaga aattgttaca aatgagtatc ttagagaaag tgatttttta attcatttaa
    13021 tgaatgcttc tcaaagcttg actcaaaaag atgcagactt tttggtgcat tgtcttttaa
    13081 attcaaggct gagtaagttt ttaattgttt taactaaagc ggatttgtta agcaaaaagg
    13141 atttagaaga agtcattgtt tataccaagg aaagcttaaa atcaagactt gtggatttag
    13201 atgaaaattt agtggaaaag attgattttt tatgtgtgag cgctaaaatg gcaagtgatt
    13261 tttataaagg tttagcgtcc aaggaaagct tgcaaaaaag tggtatgcaa gaatttgaaa
    13321 actatctttt taacgagctt tatgcaggag aaaaaagtaa gattgcctta agagcttaca
    13381 aaaaagaatt gcatttagag cttaaaaata ttctaagcga atatgaaatg caaaatcgtc
    13441 ttattaagga gaataaacaa ggtgtaagtg aagaaaatca aaagctttta cttgaacttc
    13501 aaaagcaaaa caccttatta aaagaagcac aagatgaaat ttcaaattcc attgcaaaac
    13561 ttaaaaatat agatagtggc atagataatc ttgttttact tttggctaaa aaattaaaag
    13621 aacgcttgat agatgagttt aaatatttga aaaataatgc acaaaagctt aatctttctc
    13681 gtattttaaa tatagttgat attaccacaa aagatgggat taatgatatt ttaagagaaa
    13741 ttaaatttga aaatattaaa aaaatcgagg agcttaaaac aaatttatct ttaaaatatg
    13801 attttttaaa agatgatttt gataatggtt ttgaaggttt taaagatgga atttcaaaaa
    13861 atatagatag tatttttcaa agcgaaaaat ttgcactttt aagattgaaa attgaaaaat
    13921 taagcaatct aaaatcagat ttatatg
//
LOCUS       DAPIWJ010000042        13676 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.042, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000042 DAPIWJ010000000
VERSION     DAPIWJ010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13676)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13676)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13676
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.042"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            57..1307
                     /locus_tag="RJ259_000992"
     CDS             57..1307
                     /locus_tag="RJ259_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HDV7366711.1"
                     /translation="MNTPKWTSHDTRWVLSLFGTAIGAGVLLLPISAGLGGLIPLLVI
                     LVLAFPMTYLAHRNLCRFVLSSSNPKDDITFVAESYFGKGGGFLITLLYFFAILPILL
                     VYSANLTTTLLEFLINQFNFNADLTHAARWWVSFLIVGVLVLISILGENVVTKAMSFL
                     VFPFIIFLFIFSLLLIPQWNLSLFANVDFSVISTSNFWVTLWLVIPVMVFSFNHSPII
                     SSLACYCKKEYGGYAEPRARKIISLAIILMVFVVMFFVFSCALTFTPEDFASAKDQNI
                     NILTFIANKFPEVSLLAYVGPIVALVAISKSFLGHYLGSQEGLNGILYKASNGRIQGK
                     FAQTLTAIITFAIAWLVAYKNPSVIGIIEAIGGPVLAILLFLMPLYCIYRFDILARFR
                     NKFLDLFVLVMGIVAISAAIHDLL"
     gene            1322..2686
                     /locus_tag="RJ259_000993"
     CDS             1322..2686
                     /locus_tag="RJ259_000993"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HDV7366712.1"
                     /translation="MSNLSIFKIGVGPSSSHTLGPMLAGNLFCKKVAKKLDEIDRVEV
                     TLYGSLSLTGKGHLSDKAVIWGLNGLEAKNLSAAIQDEVNKNAIENAQIDFCGEKKLS
                     FNYEKDLIFSKDFLPLHENGMKIKAYDCKGGLVDEETYYSVGGGFVLTAAELEKKGKN
                     SNQNKKKKLDIELNNAKEALELCDKRDWDLAELSYRYELQFHTKEEICAYCLEIWEVM
                     QEVYYNGTHPNEDYLPGKLHLKRRAKGLKERVAMTADPMGIIDFISLYAIAIAEENAS
                     GAKVVTAPTNGACAVIPAVMLYLKNHTIGFSDEKVIEFLLTAMLIGSFYKKNASISGA
                     EAGCQAEIGSASSMAAAAMATVLGANAFKACNAAEMAMEHHLGLTCDPVAGLVQIPCI
                     ERNAFGAIKAISAARMAMTRKSTPMVSLDEVIETMYETGKDMNYKYKETSLGGLATNL
                     KTVC"
     gene            complement(2694..3215)
                     /locus_tag="RJ259_000994"
     CDS             complement(2694..3215)
                     /locus_tag="RJ259_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366713.1"
                     /translation="MAFMNFSGFFYARNDLRLFKIEKKNELKSFFYKDYTLSSYKDDL
                     NLNNEIFFYQSLKEGLFKENDEILVSNLGKKIILFRNFTQNCDNFNETKLKQILLLFF
                     LLLASVFFASLAMINEFGAIDLLFLTICLLLLVMGVINLGLLFKQIRILKSFSKEEMK
                     EFLSQRMKKYTKV"
     gene            complement(3196..4206)
                     /gene="ribD"
                     /locus_tag="RJ259_000995"
     CDS             complement(3196..4206)
                     /gene="ribD"
                     /locus_tag="RJ259_000995"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HDV7366714.1"
                     /translation="MSNFKIQGRQMKEFYMNLALNEAWKYQFLTYPNPAVGCVILDKN
                     EKILAIKAHEKAGLAHAELNAIAHAFKSLRPEISLPKEANALHEFICKNHQGVFKDSI
                     AFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDENKIASGGAEFLKKQGIEVEFDI
                     LKEEGKKLLKPFLKWQKGQFKLFKLALSMNGSPFGKIVSNELSRTYAHEIRAVIDLLV
                     VGGETIRKDCPILDARLCKAKAPNLCILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEA
                     KFLMYEGGENFLKIFKDEIDMFLIFQSSSLNDEKNVTIPLNFKPLYRNFLGSDTYGIY
                     EL"
     gene            complement(4411..4498)
                     /locus_tag="RJ259_000996"
     tRNA            complement(4411..4498)
                     /locus_tag="RJ259_000996"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4462..4464),aa:Ser,seq:tga)
     gene            complement(4520..4593)
                     /locus_tag="RJ259_000997"
     tRNA            complement(4520..4593)
                     /locus_tag="RJ259_000997"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4559..4561),aa:Cys,seq:gca)
     gene            complement(4612..4700)
                     /locus_tag="RJ259_000998"
     tRNA            complement(4612..4700)
                     /locus_tag="RJ259_000998"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4664..4666),aa:Leu,seq:taa)
     gene            complement(4710..4784)
                     /locus_tag="RJ259_000999"
     tRNA            complement(4710..4784)
                     /locus_tag="RJ259_000999"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4750..4752),aa:Gly,seq:gcc)
     gene            complement(4856..5608)
                     /locus_tag="RJ259_001000"
     CDS             complement(4856..5608)
                     /locus_tag="RJ259_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366715.1"
                     /translation="MLAFFKGLGVGFLCLLLFVAGVVFNVEFLGKKDSNHDLYFSRNI
                     EVSNTLKPDILYANINFWANENLSSKITLDNSEKAEITNTFNQILERSKKENFCSGGS
                     FSLEPNFSYKDGIQTPKGQRFDANLECEFKENQLADFNKLLNDINSIIAKNNFISVST
                     PAIQTKFSKDTLNNNKENLYKELLKTSYEYEKTYSLDLNKTCVLKNLQVNANTNIAPR
                     MLNAKSDNIELSSPIISKKEQILNAKALFICK"
     gene            5681..6700
                     /gene="mutY"
                     /locus_tag="RJ259_001001"
     CDS             5681..6700
                     /gene="mutY"
                     /locus_tag="RJ259_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HDV7366716.1"
                     /translation="MQKKELEKLQENLLLWYEKNGRKTLPWRNLQSQNCDESLKHIDR
                     AYGVYISEIMLQQTQVKSVLERFYFPFLQKFPTLESLANANEDELLKAWQGLGYYTRA
                     RNLKKAALECVDKFGAKLPKDVEDLKKLSGIGAYTAGAIACFGYDQKVSFVDGNIRRV
                     LSRLFALENPSMKELEKRAKELLNLNHAFDHNQALLDIGALVCVGKNAKCRICPLYDF
                     CQGKFHTELYPRAKKILYESLNLNLFLFEFNKKFAIQKSQDKLYKGMYNFPFFKEGEY
                     KLSKDMGFVGEFKHSYTKYKLNIKVYHQILNNENKNYEFKTLKELESTALSALSLKAL
                     KLIKL"
     gene            complement(6686..7945)
                     /locus_tag="RJ259_001002"
     CDS             complement(6686..7945)
                     /locus_tag="RJ259_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7366717.1"
                     /translation="MQELTRTKKIRSIIAASSGNLVEWFDFYIYAFTATYFAHTFSTS
                     DNPVIQQINAFGVFAAGFFMRPIGSWLFGSLADKVGRKKSMVISVVLMALGSFMIAAL
                     PSKDTVGDLAIILLLIARLIQGLSVGGEYGIAATYLSELTTEGKRGFYSSFQYVTLIG
                     GQLLAVASISIMFLFFSIDDMKDYAWRILFVIGGILALGSLFVRKMMNESATKLHQHE
                     DRGTLKALCKSWKPFLMVLGVTSGGSLAFYTITTYTKTFMENTGMDKMLVNNLFLGAL
                     FILMIIQPLFGYIGDKIGHKRSLIVFCILALVGIYPIFSLIANNAQNNPSLTFMLVVL
                     LFVILSFYTSVAGIFKAKLFPEHVRALGTGLGYAISNAVFGGSAPWVALQFKNAGIEN
                     GFFIYIAIFTIIMLIATLCLPKKSELN"
     gene            8111..8968
                     /locus_tag="RJ259_001003"
     CDS             8111..8968
                     /locus_tag="RJ259_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM/SPASM domain-containing protein"
                     /protein_id="HDV7366718.1"
                     /translation="MKFKKIYIELSDICGLKCDFCPSQKGIRGVMSEEKFQNLAYEIS
                     NKAELFTFHLLGDPLLLPNLENYLKIAKDEAMKLEITTSGFYLNSKNQALLLGYENIH
                     QINISLMSFLSQSKISLEQYFKPILELCKKHLEQKSLSFINLRLWNLDANFKAPKSNL
                     KIYEFLAKEFEAKIDANLSKNRLQRHILLHQNKLFKWPNLKDEPLYKKGKCHALKEQI
                     GILSDGSLVPCCLDTKADINLGNVFENNFDKLFRSPRIKMMKKAFEEDKRIEKLCQTC
                     EFFKARLGD"
     gene            complement(8965..9771)
                     /locus_tag="RJ259_001004"
     CDS             complement(8965..9771)
                     /locus_tag="RJ259_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDV7366719.1"
                     /translation="MKKILIIMSLFLIALNAKERLVVLDPASIETLFMLKAEDQIVGI
                     ATLQHSNIYPKDQTSKLTSVGTFSNPSLEKIVALKPSLVILSSYSLNLEEGLKNFGIK
                     SINLKAERLEDITKNITTLGQITKKEKEAELLKQEFNQKFKKLSDKPLNKSAIYLYSS
                     NPLMAFNDNSLIADILRLIGIKNLSPQSQISRPVISAEYILKQNPDILILGINAKNNL
                     LDTNALLKNTKAVKTGSIYFNKDTPILLRLSPKIIDRIQEFKTKLENNNF"
     gene            complement(9768..10544)
                     /locus_tag="RJ259_001005"
     CDS             complement(9768..10544)
                     /locus_tag="RJ259_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7366720.1"
                     /translation="MLKIHNLSFAYHQKDLLKNIHLELKNQAFIGILGPNGSGKSTLL
                     KLILKNLSPNKGVISLFNTNIKDFSLKEFAKICGFVPQKSELNTPLKVIDVLLMSKYP
                     NLKHAFSSYSKEDILEIKEFAKDLRLENFLERSILSLSGGEFQRMLLARALLKKPKIL
                     FLDEPTSALDLNYAIELLNLCEKLVKEKNIAVVAILHDLNLASIFCDKILFLKEGEIK
                     YFGTSKELFTQEILKEIYDLNCEIIYKNSKPYILALKEKK"
     gene            complement(10544..11530)
                     /locus_tag="RJ259_001006"
     CDS             complement(10544..11530)
                     /locus_tag="RJ259_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDV7366721.1"
                     /translation="MLNLNTHSKILVIIGLLVAYIIASFTALCLGDENLNPKELFSYI
                     FSQDEILRQIIIDGRLPRIIMAILIGMLLASSGAITQNVFSNPIADPYIIGIASAATF
                     GAVLAYLLKLNDYYYGILGFVCSAFFALGVFKISSKASIATLLIIGIAASSFLGAFTS
                     FFTYLIGEDSFKIVAWLMGNIGNASWFRVGILILPLIFCLFYFYAHKNELNILLSGDD
                     EARNLGVNAQKLKINLLIVSSLAVSFAVAFSGLIGFVGLIIPHTIRLLLKNYNNALVI
                     PLCTAFGGLFLLICDTLARTLLAPVQIPIGILTAFFGAPIFLYLALSARRFL"
     gene            complement(11505..13634)
                     /locus_tag="RJ259_001007"
     CDS             complement(11505..13634)
                     /locus_tag="RJ259_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDV7366722.1"
                     /translation="MHPNKKAFKLSLFALLLITNLNAQESNKAINLQKVVVSTTGFEQ
                     DADSNLRNVISIEGKDLQNKGYVSLEQALERISSISFVNFGLGRNIDMRGQGNKSNIA
                     VKVMIDGHAINVLDNSHGVTPLDSINLDNVERIEIIPGGGSVLYGSGTRGGVINIITK
                     KQKSDAFAINLKSSAYDHGGLGGNLGINGAKQINENLAFSFDIQSFNLDGYQEGYNEK
                     GYFINTKTYIDINDNSDLTLGYNYFKSKNTSSGYLTKAQAQSDPTQKGKSDNITQINR
                     PEISLDYHYYFDDIWEFNLEAFWQNQKINYLKDVSTMSYMNMSLPVYQNGSGFEDTLT
                     GISLKNKLNYANNSYFIFGYEFANHDAKRKSLVYYSVPSVINYHRMTTLIDMTKQSHS
                     IFALDSHNFNEFFTLSGGARYEFSSYNTDRSYRNEMSMNGRPPSPTIIDSTTLFDTNK
                     NANNFAFEITPNFKYSDTGKLYIKYERGFVSPSPAQFVNKDKNSQKYYSANLNPEIFD
                     TFELGIDDFWWDFYGFNLTLFYTLSKDEISYLGNPHSTSGSWWKYYNIDQTRRLGVEL
                     SLSQNFLDDDLIFRESLTYLDAKISKGVNDGMRIPYVSKIKATAGLEYAWNKNFSNFI
                     DLTYFSRAKDGGTIDENTGKMSKNSWIRDYFLTDIGMKYNYKKLQILAGIRNLFDKRY
                     YTYQDSINDQYLVGNGRNYYVEFKYAF"
BASE COUNT         4597 a         2039 c         2189 g         4851 t
ORIGIN      
        1 tttataaata ttttgctaaa ataaaagaga tgtaatctta aatttaagga agaataatga
       61 atactcctaa atggactagt cacgatacaa ggtgggtttt atctcttttt ggaacagcta
      121 ttggagccgg cgtacttttg ttgcctatta gtgctgggct tggtggattg atacctttgt
      181 tagttatact tgttttagct tttcctatga cttacttagc tcatagaaat ttatgtcgct
      241 ttgtgctttc aagttctaat ccaaaagatg atattacttt tgttgcagaa agttattttg
      301 gcaagggcgg tggattttta attacacttt tgtatttttt tgctattttg cctattttat
      361 tggtttatag tgctaatctt acaacaactt tgcttgagtt cttaatcaat cagttcaatt
      421 tcaatgcaga tcttactcat gctgctcgtt ggtgggtgag ttttttgatt gttggagttt
      481 tggttttgat ttctattctt ggtgaaaatg ttgtaacaaa agcaatgagt tttcttgttt
      541 ttccttttat tatattttta tttatttttt cattgctttt aattccacaa tggaatttat
      601 cgttatttgc aaatgttgat ttttccgtaa tttcaacaag taatttttgg gttactttat
      661 ggcttgttat tcctgtgatg gtatttagtt ttaatcactc tcctatcatt tcttcacttg
      721 cttgttattg taaaaaagaa tatggtggtt atgctgaacc tcgcgctaga aaaattattt
      781 ctttggcaat tattcttatg gtttttgttg taatgttttt tgttttttct tgtgctttaa
      841 cctttacacc agaagatttt gcatcagcaa aagatcaaaa tatcaatatt cttactttta
      901 tagcaaataa atttcctgaa gtttctttac tagcttatgt tggacctatt gttgcacttg
      961 tggctattag caaaagtttc ttagggcatt atcttggttc tcaagaaggc ttaaatggta
     1021 ttttatataa agcaagtaat ggtagaattc aaggtaaatt cgctcaaact ttaacagcga
     1081 tcattacctt tgctatcgcg tggcttgttg cgtataaaaa tccaagtgtt ataggaatta
     1141 tcgaggctat tggtggtcct gttttggcta ttttgctttt cttaatgccg ctttattgta
     1201 tttatcgttt tgatattttg gcaaggtttc gtaataaatt tttagatctt tttgttttgg
     1261 taatggggat agttgcaatt tctgctgcaa ttcatgatct tttataaatt aaggataaaa
     1321 aatgagtaat ttaagcattt ttaaaatagg tgttggccct tcttcttctc atactttagg
     1381 gcctatgctt gctggaaatt tattttgtaa aaaagttgct aaaaagcttg atgaaattga
     1441 tagagttgag gttactcttt atggttcttt gtcgttaaca ggcaaaggac acttgagtga
     1501 taaggctgtg atttgggggt taaatggctt agaagctaaa aatttaagtg cggcaataca
     1561 agatgaagta aataaaaatg ctattgaaaa tgctcaaatt gatttttgtg gcgagaaaaa
     1621 acttagtttt aattatgaaa aagatttgat attttctaaa gattttttac ctttacatga
     1681 gaatggtatg aaaattaaag cttatgattg taaaggtggg ttagttgatg aggaaactta
     1741 ttattctgta ggtggaggct ttgttttaac agctgcggaa ttagaaaaaa aaggtaaaaa
     1801 ttctaaccaa aataaaaaga aaaaactaga tatagagctt aataacgcta aagaagcttt
     1861 agagctttgc gataaaagag attgggattt ggcagagctt tcttatcgtt atgaattgca
     1921 atttcacact aaagaggaaa tttgtgctta ttgtcttgaa atttgggaag tgatgcaaga
     1981 agtgtattat aatggtacgc acccgaatga agattatttg cctggaaaac ttcatttaaa
     2041 gcgtagagct aaaggactta aagaaagagt agcgatgaca gctgatccta tgggtattat
     2101 cgattttatt tctttatatg ctattgcgat tgctgaagaa aatgctagcg gagcaaaagt
     2161 cgtaaccgca ccaacaaatg gagcatgtgc tgttatccct gctgttatgc tttatcttaa
     2221 aaatcatact ataggtttta gtgatgaaaa ggttatagag tttttattaa cagcaatgct
     2281 tataggttct ttttataaga aaaatgcaag tattagcgga gcagaagcag gttgtcaagc
     2341 agaaattggt agtgctagtt ctatggcagc tgcggctatg gcaacagttt taggagctaa
     2401 tgcttttaaa gcatgtaatg ctgctgaaat ggcaatggaa catcatctag gtctaacttg
     2461 cgatccagtt gcaggacttg tgcaaattcc ttgcatagaa agaaatgcct ttggagccat
     2521 taaggccata agtgctgcta gaatggcaat gacacgcaaa tccactccta tggtaagcct
     2581 tgatgaggtt atagaaacca tgtatgaaac aggaaaagat atgaattata aatataaaga
     2641 aacttcttta ggtggtcttg ctacaaattt aaaaacagta tgctaaagtg tttttacact
     2701 ttagtgtatt ttttcattct ttgacttaaa aattctttca tttcttcttt ggaaaaactt
     2761 ttaagaatgc gaatttgctt aaaaagcaag ccaagattga ttactcccat cactaaaagc
     2821 aataagcaaa tcgttaaaaa aagaagatct atggctccaa attcattaat catagccaaa
     2881 cttgcaaaaa atacactcgc taataacaaa aaaaataaaa gcaatatttg ttttaatttt
     2941 gtctcattaa aattatcgca attttgagtg aaatttctaa aaagtatgat ctttttaccc
     3001 aaatttgaaa ctaaaatttc atcattttcc ttaaataagc cttcttttaa actttgataa
     3061 aaaaagattt cattgtttaa atttaaatca tctttgtagc ttgatagggt gtagtccttg
     3121 taaaaaaagg attttaattc atttttcttt tctattttaa ataatcttaa atcatttctc
     3181 gcataaaaaa atccactaaa gttcataaat gccataagta tcactcccta aaaaattcct
     3241 gtaaagtggc ttgaaattta aaggtattgt aacatttttt tcatcattta aacttgaact
     3301 ttggaaaatc aaaaacatat ctatttcatc tttaaagatt ttgagaaaat tttctccacc
     3361 ctcatacatt aaaaatttag cttcacttgg aatttgggta taaatttggc ggtttggaac
     3421 tttaaataaa gggatatttt tatcaaaatt atctatattt tgacggctta agatacaaag
     3481 attaggcgct tttgctttgc aaagcctagc atctaatata gggcaatctt ttcttatggt
     3541 ttctccaccg actacaagca aatcaatcac cgctctaatt tcatgtgcat aagtgcgact
     3601 tagctcattg cttacgattt tgccaaaagg tgagccgttc atagaaaggg ctaatttaaa
     3661 aagtttaaat tgcccttttt gccattttaa aaaaggtttt aaaagttttt ttccttcttc
     3721 tttaagtatg tcaaattcaa cctctatacc ttgttttttt aaaaattcag ccccaccgct
     3781 tgcgatttta ttttcatctt taacgctgat gaaaattttt ttaaaaccta gctcgctaaa
     3841 gagttttgca caaggaggtg tttttccttg atgagagcaa ggctcaagcg ttacaaaagc
     3901 tatgctatct ttaaatacac cttgatggtt tttgcaaata aactcatgta aggcgtttgc
     3961 ttctttgggc aatgaaattt caggtcttaa gcttttaaaa gcatgagcta tggcattaag
     4021 ttccgcatga gctaatccag ctttttcatg agcttttatg gctaaaattt tttcattttt
     4081 atctaagatt acacagccta cagccggatt tggataggtt aaaaactgat atttccaagc
     4141 ctcatttaaa gctaaattca tataaaattc tttcatttgc ctaccttgta ttttaaaatt
     4201 tgacatattt ttaaaatttt atatttttgt tttaagataa caaattctaa atttccattt
     4261 gtatttctta tttttaatta tattagccat agtttttcta agttttttta ggatataaca
     4321 aaaatagtaa gaccgaagta ttatttttca tttgtagtat cctttataat ttcaggaata
     4381 atataagctt gataaactag aaagtcttgg tggccgggag aaagggattc gaacccctgg
     4441 aggtgtgacc ctcaacggtt ttcaagaccg ccgctttcga ccactcagcc atctcccgat
     4501 aaagtaaagt tttgcctttt ggaggcgaca tccggattcg aaccggagat caaggctttg
     4561 caggcccatg ccttaccgct tggctatgtc gccctgataa tgttgaaaaa gtggtgcccg
     4621 aggccggact tgaaccggca cggaagaaaa attccgaggg attttaagtc ccttgtgtct
     4681 accaattcca ccacccgggc gggtgattat ggagcgggaa acgagattcg aactcgcgac
     4741 cccaaccttg gcaaggttgt gctctacccc tgagctattc ccgcataaat ttctgaaaga
     4801 attgaagata aaagtatagc aaaataaact taaaaggagt ttattttgct ataagttatt
     4861 tgcaaataaa taaagctttt gcatttaaaa tttgttcttt tttgctgata attggagatg
     4921 aaagttctat attgtcagat ttcgcattta gcattctagg tgcgatattg gtattggcat
     4981 ttacttgtaa atttttcaat acacaagttt tattaagatc taaagagtaa gttttttcat
     5041 attcgtatga tgtttttaaa agctctttgt agagattttc tttgttgttg tttagtgtat
     5101 cttttgaaaa ttttgtttgt atggctggtg ttgaaacgct gatgaaatta tttttagcta
     5161 tgatagaatt gatgtcattt aaaagcttgt taaaatctgc aagttggttt tctttaaatt
     5221 cacattctaa attcgcatca aatctttgac cttttggagt ttgtatacca tctttatagg
     5281 aaaaattagg ttctaaagaa aaacttcctc cgctacaaaa attttctttt tttgagcgtt
     5341 ctaaaatttg attgaaagta tttgtgattt cagctttttc actattgtct aatgtaattt
     5401 ttgaacttaa attttcattt gcccaaaaat taatatttgc atataaaata tcgggtttta
     5461 gcgtattgct tacttctata tttcttgaaa aatataaatc atgattagag tcttttttgc
     5521 ctaaaaattc tacattaaaa actactcctg caacaaaaag taataaacat aaaaaaccta
     5581 cacctaaacc tttaaaaaaa gctaacatgg atatccttaa taatttaatt tgagctaatt
     5641 ttagcaaaaa attttaaaat tttttgttat actctcattt atgcaaaaaa aagagcttga
     5701 aaaactacaa gaaaatttac ttctttggta tgaaaaaaat ggacgcaaaa ctttgccttg
     5761 gcgtaattta caaagtcaaa attgtgatga aagtttaaag catattgata gagcttatgg
     5821 ggtttatatc agcgaaatta tgcttcagca aactcaagtt aaatcagttt tagaaaggtt
     5881 ttatttcccc tttttgcaaa aatttcctac tttagaaagt ttggctaatg ctaatgaaga
     5941 cgagctttta aaggcttggc aaggacttgg ttattacact cgtgctagaa atttaaaaaa
     6001 ggcagcctta gaatgcgtgg ataagtttgg ggctaaatta cccaaagatg ttgaggatct
     6061 aaaaaaatta agtggtatag gagcttatac agcaggcgct atagcttgtt ttggctacga
     6121 tcaaaaggtt tcttttgttg atggcaatat acgccgtgtg ctttctcgtc tttttgcttt
     6181 ggaaaatcct agcatgaaag aacttgaaaa aagagctaaa gagcttttaa atttaaatca
     6241 tgcctttgat cacaaccaag ctttgcttga tataggggct ttggtttgtg tgggtaaaaa
     6301 tgcaaagtgt aggatttgtc ctttgtatga tttttgtcaa ggcaaatttc atacagagct
     6361 ttatccaaga gctaaaaaaa tactttatga gagtttaaat ttaaatcttt ttttgtttga
     6421 atttaataaa aaatttgcga tacagaaaag ccaagataag ctttataagg gtatgtataa
     6481 ttttcctttt tttaaagaag gagagtataa actttctaaa gatatgggtt ttgtagggga
     6541 gtttaagcac agctatacta agtataaact taatatcaag gtttatcatc aaattctaaa
     6601 caatgaaaat aaaaattatg aatttaaaac cttaaaagag ttagaaagta ccgcactttc
     6661 ggcactttct ttaaaagcgt taaaattaat taagctctga ttttttaggc aaacataaag
     6721 tagctataag catgatgatt gtaaaaatag ctatatatat aaaaaagcca ttttctatac
     6781 ctgcattttt aaattgtaaa gcaacccaag gagcagatcc tccaaaaaca gcatttgaaa
     6841 tagcataacc taaacctgtc cctaaagctc ttacatgttc aggaaaaagt tttgctttaa
     6901 aaatcccagc aactgaagta taaaaactta aaataacaaa caataatacc accaacataa
     6961 atgtcaaaga aggattattt tgtgcgttat tggctataag tgaaaaaata ggataaattc
     7021 ctaccaatgc caaaatacaa aatacaatta aagatcgttt gtgacctatt ttatctccta
     7081 tatatccaaa aagaggttga atgatcatta gtataaataa agcacctaag aaaagattat
     7141 taacaagcat tttatccata cccgtatttt ccataaaagt tttagtataa gttgtaatgg
     7201 tgtaaaaagc taaagaacct ccagaggtaa ccccaagtac cattaaaaaa ggtttccaag
     7261 atttgcataa tgcctttaaa gtaccacgat cttcatgctg gtgaagtttt gtagcacttt
     7321 cattcatcat ttttcttaca aaaagcgagc ctagtgctaa aattccgcct attacaaaaa
     7381 gtattctcca agcataatct ttcatatcat caatgctaaa aaataaaaac attatactaa
     7441 tgcttgcaac ggccaaaagt tgaccaccta ttagggttac atactgaaaa gatgagtaaa
     7501 aaccgcgttt tccttccgta gtaagttctg aaagataagt agctgctatg ccatactccc
     7561 cgcctacact aagaccttga ataagtcttg ctattaaaag caagataata gcaagatcgc
     7621 ccactgtatc tttgcttggt aaggctgcta tcataaaaga gcctaaagcc attaaaacca
     7681 ctgatataac catagatttt ttacgaccta ctttatcagc taaagagcca aaaagccaag
     7741 agcctatagg acgcataaaa aatcctgctg caaaaacccc aaaggcattg atttgctgga
     7801 taacaggatt atctgaagtt gaaaaagtat gagcaaaata agttgctgta aaagcataga
     7861 tataaaaatc aaaccactct actaaatttc cgctacttgc agcaataata gagcgaattt
     7921 ttttcgtgcg agtaagctct tgcataaacc cttccttaat tttagatttt tatttaagta
     7981 tagtgtgatt tttgtttaat atatttaaaa ataaagaaga gaaataaaaa agataaaaat
     8041 atcgataaaa atgttacata ttttaataaa tttcataaat tttggtaaaa tgtttactct
     8101 aggaaatata atgaaattta aaaaaatata tatagaatta agcgatattt gtggtttaaa
     8161 atgtgatttt tgtccttctc aaaaaggaat tcgcggggta atgagtgaag aaaaatttca
     8221 aaacttagct tatgaaattt ctaataaagc tgagcttttt acctttcatc ttttgggtga
     8281 tcctttgctt ttacctaatt tggaaaatta tctaaaaatc gcaaaagatg aagctatgaa
     8341 acttgaaatc actacaagtg gcttttatct aaattctaaa aatcaagctt tattgttagg
     8401 gtatgagaat atccatcaaa tcaatatttc tttaatgtct tttttaagtc aaagcaaaat
     8461 ttctttagaa cagtatttta agcctatttt agaactttgc aaaaagcatt tagagcaaaa
     8521 aagcctttct tttatcaatc taagactttg gaatttagat gctaatttta aagcacctaa
     8581 gtcaaattta aaaatttatg agtttttagc caaagaattt gaagctaaga tcgatgcaaa
     8641 cttaagtaaa aatcgcttgc aaagacatat tttgcttcat caaaataaac tttttaaatg
     8701 gccaaattta aaagatgaac ccctttataa aaaaggaaaa tgtcatgctt taaaagagca
     8761 aattgggatt ttaagtgatg gaagtttggt gccttgctgt ttggatacta aagcagatat
     8821 taacttggga aatgtttttg aaaataactt tgataagctt tttagatcac cgcgtataaa
     8881 gatgatgaaa aaagcttttg aagaagataa acgcatagaa aaactttgtc aaacttgcga
     8941 attttttaaa gcaagattgg gtgattaaaa attgttattt tctagctttg ttttaaattc
     9001 ttgaattcta tctattatct taggactaag acgtaataat ataggtgtat ctttgttaaa
     9061 ataaatactt cctgttttaa ctgctttggt atttttcaat aaagcatttg tatctaaaag
     9121 attgttttta gcattaattc caagaatgag tatgtctgga ttttgtttca gtatgtattc
     9181 tgctgatata acaggtcttg aaatttgact ttgcgggctt aaatttttaa tccctataag
     9241 tcttaaaata tcagctatta aagaattatc attaaaggcc attaaagggt tgctagaata
     9301 aagataaatc gcacttttat ttaggggttt atcgcttaat tttttaaatt tttggttaaa
     9361 ttcttgtttt aaaagctctg cttctttttc ttttttggtg atttggccta aggttgtgat
     9421 attttttgtt atatcttcta aacgctcggc ttttaaattg atacttttga taccaaaatt
     9481 tttaagtcct tcttctaaat ttaaagaata agagcttaaa atcaccaaac ttggttttaa
     9541 tgctactatt ttttcaagcg aaggatttga aaaagtgcct acgcttgtaa gttttgaggt
     9601 ttgatcttta ggataaatat ttgagtgttg taaagtagca atgcctacga tttgatcttc
     9661 agccttaagc ataaaaaggg tttctatgct tgcaggatca agcactacaa ggcgttcttt
     9721 tgcatttagt gcgattaaaa acaaactcat aataattaaa atttttttca ttttttctcc
     9781 tttaaagcta aaatataagg tttagaattt ttataaataa tctcgcagtt taaatcataa
     9841 atttctttta aaatttcttg agtaaaaagc tctttgctcg ttccaaaata ctttatctcc
     9901 ccttctttta aaaaaaggat tttatcgcag aatatagaag ctaaatttaa atcatgcaag
     9961 atagcaacaa cggctatatt tttttcttta actagttttt cgcaaaggtt taaaagctct
    10021 atagcatagt ttaaatcaag ggctgaagtg ggttcatcta aaaaaagaat ttttggcttt
    10081 ttaagcaaag ctcttgctaa aagcattctt tgaaattcac ctccgcttaa agaaagtatg
    10141 cttctttcta gaaaattttc aagtcttaaa tccttagcaa attctttaat ttctaaaata
    10201 tcttctttag aataagaact aaaagcgtgt tttaaattcg gatatttact cattaaaagc
    10261 acatcgatga cttttaaagg ggtgtttaat tctgattttt gaggcacaaa gccacaaatt
    10321 ttggcaaatt ctttaagaga aaaatccttg atatttgtgt taaaaagact tatcactcct
    10381 ttatttggac ttaaattttt aagtataagt tttaaaagag tgcttttgcc tgagccattt
    10441 ggccctaaaa ttcctataaa agcttggttt ttaagttcta aatgaatatt ttttagtaaa
    10501 tctttttggt gataagcaaa gcttaaatta tgtattttta gcattataaa aatctcctag
    10561 cgcttaaagc taagtataaa aaaataggag ctccaaaaaa tgcagttaaa attccaatcg
    10621 gaatttgcac aggagctaaa agagttcttg ctaaagtatc acaaataagt aaaaataatc
    10681 ctccaaatgc tgtacataaa gggataacta aggcattatt ataattttta agcaaaagtc
    10741 ttatagtatg aggaatgatg agtccaacaa agcctataag tccgctaaaa gcaaccgcaa
    10801 aagatacagc taaggatgag acaatgagta aatttatctt taatttttga gcatttaccc
    10861 ctagatttct agcttcatca tctccgctta aaagtatgtt taattcgttt ttatgagcgt
    10921 aaaaataaaa caaacaaaaa attaaaggca agattaaaat tcccacacga aaccaagaag
    10981 cattgcctat atttcccata agccaagcga ctattttaaa agaatcctcg cctataagat
    11041 aagtgaaaaa agaagtaaaa gcccctaaaa aagatgaagc tgctatgccg ataatgagta
    11101 aagttgctat agaagcttta gaagaaattt taaaaactcc tagggcaaaa aaggcagagc
    11161 aaacaaaacc taaaattcca taataataat cattcaattt taacaaatac gccaaaaccg
    11221 ctccaaaggt tgccgcagaa gctataccta tgatataagg atcagctata ggatttgaaa
    11281 atacattttg agtgatagcc ccactactag ctaaaagcat accgattaaa atcgccatta
    11341 taatccgtgg taagcgtcca tctatgatta tttgtcttaa aatttcatct tggctaaaga
    11401 tatatgaaaa aagctctttt ggatttaaat tctcatctcc taagcaaagt gctgtaaaag
    11461 aagcgattat ataagctacc aaaagcccta taatcactaa aattttagaa tgcgtattta
    11521 aattcaacat agtagtttct gccatttcca actaggtatt gatcatttat actgtcttga
    11581 taggtgtagt atcttttatc gaaaagattg cgaattcctg ctaaaatttg tagtttttta
    11641 taattatatt tcatgccaat atctgttaaa aaataatccc ttatccaaga atttttagac
    11701 atttttcctg tattttcatc tatagttcca ccatcttttg ctctagaaaa ataggttaaa
    11761 tcaataaaat ttgagaaatt tttattccaa gcgtattcaa gcccagctgt ggctttgatt
    11821 tttgaaacat aaggaattct catgccgtca ttaacacctt tagaaatttt agcatcaaga
    11881 taagttagac tttctctaaa gattaaatca tcatctaaaa aattttgact caggcttaat
    11941 tctactccta aacggcgagt ttgatctata ttataatatt tccaccaaga tccactagta
    12001 gaatgagggt ttccaagata agaaatttca tctttgctta gggtgtaaaa taaagttaga
    12061 ttaaagccgt aaaaatccca ccaaaaatca tcaataccta gttcaaaggt atcaaagatc
    12121 tcaggattta aatttgcaga ataatacttt tgtgaatttt tatccttgtt gacaaattgt
    12181 gctggacttg gagagacaaa acctctttcg tatttgatat aaagctttcc tgtgtctgag
    12241 tatttaaaat ttggagtgat ttcaaaagca aaattattgg cgtttttatt ggtatcaaaa
    12301 agtgttgttg agtctatgat agtaggtgat gggggtcttc cgttcatact catttcattt
    12361 ctataagatc tatcggtatt ataagagcta aattcatatc tagctccacc ggataaagta
    12421 aaaaattcat taaaattatg agaatcaaga gcaaaaatag aatggctttg tttagtcata
    12481 tctattaaag ttgtcatcct gtgataattt atgacacttg gaacgctata atacaccaaa
    12541 ctctttcttt ttgcatcatg gtttgcaaat tcataaccaa aaataaaata agaattattt
    12601 gcataattta gtttgttttt taaacttatc cctgtaagcg tgtcttcaaa accacttcca
    12661 ttttgatata caggaagact catattcatg tagctcattg tagaaacatc ttttagataa
    12721 ttgatctttt gattttgcca aaaagcttct aggttaaatt cccatatatc atcaaaatag
    12781 taatgataat ccaaagaaat ttcagggcga ttgatttgtg tgatattatc actcttacct
    12841 ttttgggttg gatcgctttg agcttgtgct tttgttagat agccactgct ggtatttttg
    12901 cttttaaaat aattataacc caaagttaaa tcgctattat cattgatatc aatataggtt
    12961 tttgtgttga taaaataacc tttttcatta taaccttctt gatatccatc aaggttaaaa
    13021 ctttgtatat caaagctaaa agctaaattt tcatttattt gtttggcacc attgatacct
    13081 aaatttccac ctagtccacc atgatcataa gcactgcttt ttaaatttat agcaaaagca
    13141 tctgattttt gtttttttgt aatgatatta atcacgccac ctctagtacc acttccataa
    13201 agcacagatc cacccccagg tatgatttct atgcgttcta cattatctaa attgatacta
    13261 tctagtgggg ttacaccatg ggaattatca agaacattaa tagcatgccc atcaatcata
    13321 acttttacag ctatattgga tttatttcct tgtccacgca tatctatatt gcgtccaagt
    13381 ccaaaattta caaaactaat gctcgaaatt ctttctaagg cttgttctaa agaaacataa
    13441 cctttatttt gtagatcttt gccttctatg ctgattacat tgcgtaaatt tgaatccgca
    13501 tcttgttcaa aacctgttgt actaacaaca actttttgta gattgatagc tttatttgat
    13561 tcttgtgcat ttaaattagt tattagcaat aatgcaaata aagataattt aaaagctttt
    13621 ttatttgggt gcaaatttta ctccttaaat aaaataaata atgataattt atatca
//
LOCUS       DAPIWJ010000043        13593 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.043, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000043 DAPIWJ010000000
VERSION     DAPIWJ010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13593
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.043"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            36..1496
                     /locus_tag="RJ259_001008"
     CDS             36..1496
                     /locus_tag="RJ259_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366723.1"
                     /translation="MHGKIAIYMDSTGRGTVTNSANTFFDFNRQIWNDKKSMPSVGML
                     VEFRTLSSEKKAEDGKLVQTSKTITGIKPSKFQEFKEGDFIAEHDFWKTDNDDELEDL
                     QNSRRSAYITELYRTTDFDTIEKIPLSFTIPQAIQKYFAHEILSVETLQANLQDEKEI
                     PCILDYLILKRFLFKAYDTLIFMDNSIDQTQFSALKSIMMHLENSYKQMMADQKPNIT
                     KIFNETFLSLQCHYQALVATIDTRKNRLASLEAQMKTLQSEINLKSNATDADPEKLKA
                     RQERLAKLQKEAEYYRTTLKRLDAIREDFYKKNYNIFENAFKLSREKLFKKIVTGLNL
                     CATIMDVKIWHLSLKSSGVKNSYFTMSNIENSFCSLSFAEHYLSRLNKSALNPFDQKL
                     LVYIQKITKEQRKKFLVVTSDLDLLCKLKIENFSQNPYYLVKYAPKKVNYQSLMRDNT
                     FDIVYIDEKHVWENVADIILQGKHFDKSGKTKFKLI"
     gene            1736..2986
                     /gene="purD"
                     /locus_tag="RJ259_001009"
     CDS             1736..2986
                     /gene="purD"
                     /locus_tag="RJ259_001009"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HDV7366724.1"
                     /translation="MKIMILGSGAREYSIALALRRVDKNLEFYFAPGNGATESLGTNL
                     NLKDPVVLATYAKEKGFDLCIVGSESFLAEGVVDIFKQQGLAIFGPSKAAAMLETSKS
                     FMKSFLKKYRIKTAKFLNTNDIEKAKNFIYSLTPPIVVKADGLCAGKGVIIAKTHEEA
                     IEETAKMLSGESFGDAGKLVVIEEFLDGYELSIFAVCDGNDFVLLPAAQDHKKLLDND
                     QGPNTGGMGAYAPSSLANESLLRKVQKDIILPTLAGMKKEGAEFCGVLFIGAMIVGNK
                     PYVLEFNVRFGDPECEVLMPLIEDPLELILAATQRRLRHSKIKIKKEFAVGVVCASEN
                     YPYKSSPKSEITVNNIPENSHISYAGVSLEDGKLMADGGRVLVCVGTGKSIEEAQKNA
                     YKLCDNVNFKGKQYRKDIAHQVLK"
     gene            2983..3435
                     /locus_tag="RJ259_001010"
     CDS             2983..3435
                     /locus_tag="RJ259_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HDV7366725.1"
                     /translation="MKENLQDRLERENLKIASFGKRVLAFLIDDMVISLIVFIIFYDR
                     LIQAKDLFETTQIVGNFYLGFILLHFSYQAIFTYLYGASLGKILCKIIILDENLLDKP
                     NLIQSCIRSAVRQVSAMAFMLGFAWALSNDLRKAWEDYLARTIVVDVA"
     gene            3425..5473
                     /locus_tag="RJ259_001011"
     CDS             3425..5473
                     /locus_tag="RJ259_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HDV7366726.1"
                     /translation="MWRKFSLLLGTSIALNAAQVDIYALDAKKEGDILTANNDVIIFS
                     DFYFITANKAIYNEKTGDVELFGDVNILRGQNERSHSDYAKINLNSNQADFSNFFFSN
                     NNLEVWFQSKTSHLNDKVFESKVSAVSSCNVEDPDWEIRFSKGWLNRETNFVHLYNAR
                     LYVKNTPVFYLPYFGFSADTHRQSGLLIPKIVLKSSEGLYYEQPIYIATQENWDLELD
                     PQIRTNRGFGLYSTLRFLDSPYSTGELNFGAFRENSSYFHDENLKNQTHYGIELKYSR
                     DDLIKSLLSDNFQEGLWIDATYLNDVDYLNLGSRDYRDLNSLVTSKINYFLADENNFY
                     GAYARYYIDTSKLSNNTTLQEYPSFQYHRFLNNLFDERLRYSFDASFHNFYRPAGSYA
                     NELNLDLPISYHNAFFGDFLHFTFTERFYASFVNYSNDPERNHEHYFRNTHDFNLYTD
                     LSKAYENFFHTLNLGVNYILPGAKSGKITQDYLEEYDKENEHTSLYTVQYFYNNEGQK
                     KLKHRISLDYLNKQNEFYELENLLTYYFNENINLNSEVLYSYEQSRFTNVISQIEVNT
                     NSKFNWMFSHAYQNDEYGKYSFIGTRANYIATPNYNLFGGIWFDTQRAHANMWELGYT
                     YQRKCWNYSLMYRERIDPQLTSGGITAKNQSGVYFIFNFYPLGGVKYDFSLAESENKI
                     "
     gene            5543..7702
                     /locus_tag="RJ259_001012"
     CDS             5543..7702
                     /locus_tag="RJ259_001012"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HDV7366727.1"
                     /translation="MQYSIEINKNTEIFDIDKVAKQAAGAVLMRQGKSVVLATVAREE
                     KQVEEDFLPLTVQYIEKAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGY
                     AYPTQIVVMVLSADPKVDLQVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNP
                     NNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNEL
                     SEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIELKNEIEHPEILAFIENNFQKQ
                     IKEAINQMAKSERASELNKIAKEILNLEITKDWSEESVLNTLAKVKRKLIREQILNEG
                     KRADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDSQMIDLLTEK
                     NPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLVS
                     EILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIMGLEDH
                     DGDMDFKVAGSKDGVTALQMDIKLGGIDQEILKQALYQAKEGRIHILNIMEEAAKEII
                     VNEEVLPKLELFSVDPSKIVDIIGQAGKTIKEIVEKFGVSIDLDREKGEVKIAGSQNE
                     QIKAAKDYIINITSSQKGTKKGPKDKDISGFELGQEFQGIVKKIAPFGAFVELKNGVD
                     GLLHSSKIKHLNLSENQSLKVKISEIKNGKISVDLCE"
     gene            7699..8181
                     /locus_tag="RJ259_001013"
     CDS             7699..8181
                     /locus_tag="RJ259_001013"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HDV7366728.1"
                     /translation="MSEFLTHPFEPFFDKDSKILILGSFPSIKSRQDGFYYQHPRNRF
                     WPILETLFNAKLENITEQQAFLRKKHIALWDVLQSCKIKNSDDKTISYAKANDLNLIL
                     SQTKIQAIFTTGQSAYRFFVKFHPRLEAIALPSTSPANLNFSFEQLLQNYEIIKKFTK
                     "
     gene            8239..8448
                     /locus_tag="RJ259_001014"
     CDS             8239..8448
                     /locus_tag="RJ259_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HDV7366729.1"
                     /translation="MPFVNIRITKENGEPTTEQKQELIAGVTDLLAKVLNKNKSSTVV
                     IIDEIDTDNYGLGGKSITQARKEKS"
     gene            complement(8445..9107)
                     /locus_tag="RJ259_001015"
     CDS             complement(8445..9107)
                     /locus_tag="RJ259_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HDV7366730.1"
                     /translation="MEMILFVLVMILLVLLFVVLFRQYKSPKIEEKSTQSFSDIMQLK
                     SIGELSVFQVFSKEIVTKKDSAFNGIWKNLLGWSLSERQIALIFEFEITFLYDLRDKN
                     FDILPLGDDAYKIIMPECRYKHSIIDMKFYDEKNAKFLPFLLPDSINSTGISFSESDK
                     NKLIKEAKDEVKDLSLNLIQNLESKIHKSAKDTLEAIAKGFGAKRVEFEFKDNTQKLD
                     VS"
     gene            complement(9125..10309)
                     /locus_tag="RJ259_001016"
     CDS             complement(9125..10309)
                     /locus_tag="RJ259_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7366731.1"
                     /translation="MENFNRTLLVCWFGVFTTSMGLSQIAPILPFYIKELGHVDTSEI
                     AFYSGLAFGITPLFMAVFSPLWAFLGAKYGYKNMLLRASFGMSVLTLWLSFAHSALEV
                     VFVRGLTGIISGFTSAAVVFIAVIAPKEKVAYALGTLSTASISGSLLGPLFGGFVAEF
                     FSISAVFDVVAFLIACSFVTIYFFIHGRKIQKEAKKNTQKVKENKTLIIVLFITTFVI
                     QFGTFGVMPILSIYVEQIHQGGNLALWAGIVVAASGISNLFFAPKLGKIADKIGPSKI
                     IFGALIFCGICFYLQAVASNVYTLIFVRLLIGVGLGGLLPCVNALLKKSVSAKNLSVI
                     FGFNQTCQFLGNFCGAFGGGLMASHFSVEFVFTFVCLIFIINAFIFLAFEKKYIFSNQ
                     GL"
     gene            10363..10818
                     /locus_tag="RJ259_001017"
     CDS             10363..10818
                     /locus_tag="RJ259_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HDV7366732.1"
                     /translation="MKKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFINSAGTSG
                     EHDGEGMHYGTKNKLAQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNVLKNFTN
                     TQNKVLKITDFSPSLNYDEVPDPWYSGNFDETYKILSLACKNLLVFLSK"
     gene            11070..12344
                     /gene="porA"
                     /locus_tag="RJ259_001018"
     CDS             11070..12344
                     /gene="porA"
                     /locus_tag="RJ259_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group 1 major outer membrane porin protein PorA"
                     /protein_id="HDV7366733.1"
                     /translation="MKLVKLSLVAALAAGAFSAANATPLEEAIKDVDVSGVLRYRYDT
                     GNFDKNFVNNSNLNNSKQNHKYRAQVNFSAAIADNFKAFIQFDYNAADGGYGANGIKN
                     DQKGLFVRQLYLTYTNEDVATSVIAGKQQLNTIWTDNGVDGLVGTGIKVVNNSIDGLT
                     LAAFAVDSFMAEEQGADLLGKSTIPTTQKAAPFQADSLGNLYGAAAVGSYDLAGGQFN
                     PQLWLAYWDQVAFFYAVDAAYSTTIFDGINWTLEGAYLGNSLDSELNDKRHANGNLFA
                     LKGSIEVNGWDASLGGLYYGDKEKASTVVIEDQGNLGSLLAGEEIFYTTGSRLNGDTG
                     RNIFGYVTGGYTFNETVRVGADFVYGGTKTEATNHLGGGKKLEAVARVDYKYSPKLNF
                     SAFYSYVNLDQGVNTNESADHSTVRLQALYKF"
     gene            complement(12459..13580)
                     /gene="dnaJ"
                     /locus_tag="RJ259_001019"
     CDS             complement(12459..13580)
                     /gene="dnaJ"
                     /locus_tag="RJ259_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HDV7366734.1"
                     /translation="MEISYYEILEITQNADKETIKKAYRKMALKYHPDRNQGDKEAED
                     KFKLVNEAYEVLSNDEKRAIYDRYGKDALKGGGFGSSSSGFGGFEDLGDIFSSFFGEG
                     FGSSRRRKSSNDEKIPSDFIVNLKLSFKEAVFGCKKNIDFTYKCSCKTCNGTGAKDGK
                     LQTCPKCQGRGQVGVSQGFITFAQTCPDCQGSGEKASEKCSDCKGLGYNESKDSVELN
                     IPEGVDTGMKLRVNAKGNILKNGTRGDMYVKIIAAEDDTFIRDDDDIYIEFPVFFTQA
                     ILGESIKVPTIRGEATLNLPKGAKDGQRFVLEKEGVKDVHNSRMGNQIVQISIKFPTS
                     LNDEQKELLEKLSESFGIKDGMHQEQKGLFEKITNWFKS"
BASE COUNT         4926 a         2328 c         2163 g         4176 t
ORIGIN      
        1 gctagaattt atttaagaaa tttcaaggaa gaaatatgca tggaaaaata gctatttata
       61 tggattctac aggacgtgga accgttacaa actcagcaaa tacctttttt gactttaatc
      121 gccaaatttg gaatgataaa aaaagtatgc caagtgttgg tatgcttgtg gaatttagaa
      181 ctctttctag cgaaaaaaaa gcagaagacg gcaaactcgt tcaaacaagc aaaaccataa
      241 caggtataaa accttcaaaa tttcaagaat tcaaagaagg ggattttatc gctgagcatg
      301 atttttggaa aactgataat gatgatgaat tagaagactt gcaaaactca agaagaagtg
      361 cttatataac agaactctat agaacaacag actttgacac tatagaaaaa attcctcttt
      421 cttttactat acctcaagct atacaaaaat attttgccca tgaaatttta tccgtagaaa
      481 cgcttcaagc caatctacaa gatgaaaagg aaattccttg tatacttgat tatcttatac
      541 ttaaaagatt tttatttaaa gcttatgata ctttaatttt tatggataat agcatagacc
      601 aaacccaatt tagcgcatta aaaagcatca tgatgcattt agagaattcg tataagcaaa
      661 tgatggctga tcaaaaacca aatatcacta aaatttttaa cgaaactttt ttatctttgc
      721 agtgtcatta ccaagcttta gtagccacca tagatacaag aaaaaatcgt ctagcctcac
      781 ttgaagcaca aatgaaaact ttacaatctg aaataaatct taaaagcaat gcgaccgatg
      841 cagaccctga aaaacttaaa gcacgacaag aaagattggc taaactacaa aaagaagcag
      901 aatactacag aacaacacta aaaagacttg atgctataag ggaagatttt tataagaaaa
      961 attacaatat tttcgaaaat gcttttaaac tttcacgaga aaaactcttt aaaaaaattg
     1021 tcacaggttt aaacctatgt gcaaccataa tggatgtcaa aatttggcac ttatctttaa
     1081 aatcatcagg ggttaaaaat tcttatttta ctatgagtaa tatagaaaat tctttctgtt
     1141 ctctttcttt tgcagaacat tacttaagtc gcttaaataa atccgctcta aatccttttg
     1201 atcaaaaact tttagtgtat attcaaaaaa tcacaaaaga acaaagaaaa aaatttttag
     1261 ttgtcacatc ggatttagat ttattatgca aattaaaaat tgaaaacttt tcacaaaatc
     1321 cgtattattt agtaaaatac gcacctaaaa aagtaaatta tcaatcttta atgcgtgata
     1381 acacctttga tatagtctat attgatgaaa aacatgtttg ggaaaatgtt gccgatatta
     1441 ttttacaagg aaagcatttt gacaaatcag gaaaaaccaa atttaaactg atttaagaca
     1501 tagaaattta agctaaatta agttataatt tccttgccta aacagtttgt agtatttaaa
     1561 gtgatccaac acatttttat taactgcgat tgtgtgattt accgtgttct gtggcatcgt
     1621 ttgagctttg aaaaaagcga gaagttgcag cctttaaaaa ttacctagcg gttttctttg
     1681 actttttggg gtcaatcttt gttaaacggc tgtttgggtt taaaaggaga tataaatgaa
     1741 aataatgatt ttgggtagtg gtgcaagaga atattctatt gctttagcct taagaagagt
     1801 agacaaaaat ttagagtttt attttgctcc tggaaatggc gctaccgaaa gtcttggaac
     1861 aaatttaaac ctaaaagatc cagtagtttt agcaacctat gcaaaagaaa aaggttttga
     1921 tctttgtata gtaggaagtg aaagtttttt agctgaaggg gttgtagata tttttaaaca
     1981 acaaggactt gctatttttg ggccaagtaa agctgctgca atgcttgaaa cctcaaaatc
     2041 ttttatgaaa agctttctta aaaaataccg tatcaaaaca gccaaatttt taaacacaaa
     2101 tgacattgaa aaagcaaaaa attttatata tagtttaacc cctcctatag tagtaaaagc
     2161 cgatggactt tgcgcaggaa aaggtgttat catagctaaa actcatgaag aagccataga
     2221 agaaacagct aaaatgctga gcggagaaag ctttggagat gctggaaaac tcgttgtaat
     2281 tgaagaattt ttagatggtt atgaattaag catttttgca gtatgtgatg gcaatgattt
     2341 tgttttactt cctgcagcac aagatcacaa aaaattactc gataatgatc aagggccaaa
     2401 tactggtgga atgggtgctt acgctcctag ctctttggcg aatgaaagct tgcttagaaa
     2461 agttcaaaaa gatattattt taccaacttt agcaggtatg aaaaaagaag gagcggaatt
     2521 ttgtggtgtt ttatttatag gtgctatgat cgttggaaat aaaccttacg tattagaatt
     2581 taacgttcgc tttggcgatc ctgaatgtga agttttaatg cctttaatcg aagatccttt
     2641 agagcttatt ttagctgcta ctcaaagacg cttaagacac tcaaaaatca aaatcaaaaa
     2701 agaatttgca gtaggggttg tatgcgcaag tgaaaactat ccttacaaaa gttcaccaaa
     2761 aagtgaaatt actgtaaata acattccaga aaactctcat atttcttatg ctggagtaag
     2821 cctagaagat ggcaaattaa tggctgatgg tggaagagtt ttagtttgcg ttggcacagg
     2881 aaaaagtata gaagaagcgc aaaaaaatgc ttataaactt tgtgataatg taaatttcaa
     2941 aggaaaacaa tacagaaaag acatcgctca tcaggttctg aaatgaaaga aaatttacaa
     3001 gaccgcttag agcgtgaaaa tctaaaaata gcaagttttg gaaaaagagt tctagctttt
     3061 ttaatcgatg atatggttat ttctttgatt gtgtttatca ttttttatga tcgtctaatc
     3121 caagcaaaag atttatttga aacaactcaa attgtaggaa atttttacct tggcttcatc
     3181 ttgcttcatt ttagttatca agcaattttt acttatcttt atggggcaag tttgggaaaa
     3241 atattatgca aaattatcat cttggatgaa aatcttcttg ataaacccaa tctcattcaa
     3301 agttgcatca ggtctgccgt aagacaagtt agtgctatgg cgtttatgct tggatttgct
     3361 tgggctttaa gcaatgattt acgcaaagct tgggaggatt atctagcaag gacaatagta
     3421 gtcgatgtgg cgtaaatttt ccctattgct aggaactagc atagctttaa atgcagcaca
     3481 agttgatatt tacgctcttg atgcaaaaaa agaaggtgat attcttactg cgaacaatga
     3541 tgttattatt ttttctgatt tttatttcat cactgccaat aaagcaattt acaatgaaaa
     3601 aaccggagat gttgagcttt ttggcgatgt taacatccta aggggacaaa acgaaagatc
     3661 acattctgat tatgctaaaa tcaacctaaa ttccaatcaa gccgatttta gtaatttttt
     3721 cttttccaat aacaatcttg aagtatggtt tcaaagcaaa acaagccatc taaatgataa
     3781 agtctttgaa agcaaagttt cagcagtttc aagctgcaat gttgaagatc ctgattggga
     3841 aattcgtttt tcaaaaggct ggcttaaccg ggaaaccaat tttgttcatc tttacaatgc
     3901 aagattatat gttaaaaata ccccagtttt ttatctacct tattttggat ttagcgctga
     3961 tactcataga caaagcgggc ttttaatccc aaaaatcgtt ttaaaaagta gcgaaggctt
     4021 atactatgaa caacctattt atatagccac tcaagaaaat tgggatttag aacttgatcc
     4081 acaaattcga acaaaccgtg gttttggact ttattctact ttaagatttc ttgattctcc
     4141 atattcaaca ggagaattaa attttggtgc ttttagggaa aatagctcct attttcacga
     4201 tgaaaatttg aaaaatcaaa cccactatgg aatagaacta aaatactcaa gagatgattt
     4261 aatcaaatct ttactcagtg ataattttca agaaggtcta tggatagatg caacctatct
     4321 caacgatgtg gattatttaa atttaggaag tagggattat cgagatctta actcgcttgt
     4381 aacctccaaa atcaattatt ttttagctga tgaaaacaat ttttacggag cttatgcaag
     4441 atattatatc gacacatcta aacttagcaa caatacaacc ttacaagaat atccaagctt
     4501 tcaatatcat agatttttaa ataacctttt tgatgaacgc ttgcgttatt catttgatgc
     4561 ttcatttcat aatttttacc gacctgctgg ttcttatgca aatgagctaa atttagactt
     4621 gcctatctcg tatcacaacg ctttttttgg agacttttta cactttactt ttacagaaag
     4681 attttatgct tcttttgtaa attatagcaa cgatcctgaa agaaaccatg agcattattt
     4741 cagaaacact catgatttta atctctacac cgatctttca aaagcttatg aaaatttctt
     4801 tcatacttta aatttagggg tgaattacat tttaccagga gcaaaatcag gtaaaatcac
     4861 gcaagattat cttgaagaat acgacaaaga aaacgaacat acaagtcttt atactgtgca
     4921 atatttctat aacaacgaag gacaaaaaaa actcaaacac agaatttcac ttgactatct
     4981 caataaacaa aatgaattct atgaacttga aaatctttta acttattatt ttaatgaaaa
     5041 catcaatctc aacagcgaag tgctttactc ttatgagcaa agtcgcttta ccaatgtcat
     5101 cagccaaata gaagtcaata caaattcaaa atttaattgg atgttttctc atgcttatca
     5161 aaacgatgag tatggaaaat atagctttat tggtacaaga gcaaattata ttgccacacc
     5221 taattacaat ttatttggtg gaatttggtt tgatactcaa agagctcatg caaacatgtg
     5281 ggaacttggc tatacctacc aaagaaaatg ttggaactat tctttaatgt atagagaaag
     5341 aatcgatcca caactcacaa gtggtggcat cacagctaaa aatcaaagcg gagtttattt
     5401 tattttcaac ttctatcctt taggaggagt aaaatacgat ttctctttag cagaaagtga
     5461 aaacaaaatt taaaaaggat gaaatttgct aaatatttta aaaaatttta cgaatttatt
     5521 atctggtaaa aaaggaaaaa taatgcaata cagcatagaa attaacaaaa atacagaaat
     5581 atttgatata gacaaagtcg ccaaacaagc tgccggtgct gttttaatga gacaaggcaa
     5641 aagcgttgtt ctagctacag ttgcaagaga agaaaaacaa gttgaagaag attttttacc
     5701 tctaaccgtc caatacatcg aaaaagctta tgccgcagga aaaatccctg gtggttatgt
     5761 caaaagagaa accaagccaa gcgatgcaga aaccttaaca gcacgcatta ttgatagaag
     5821 cttacgccct ctttttccaa aaggctatgc ttatccgact caaatcgttg tgatggttct
     5881 ctcagctgat cctaaagtag atttacaagt aatgagctta aatgccgcaa gcgtggcact
     5941 ttatcttagt gatataccta tgaaagctcc agtatgtggt gtgcgtatag gaaagataga
     6001 tggaaatttc atactcaatc caaacaatga agagcttcaa aatagcaccc tagatctcta
     6061 tgtagcaggt gtaaaagatg agcttttgat gatagaaatg agagccttac ctgatcaaaa
     6121 agaaaatgaa atctttatcg aagctcctta tgctgatgtt ttaactcaaa ccacttcaca
     6181 aaatatgaat gaacttagcg aagatgaaat tttagaagct ctaaatttag ctcaaaaagc
     6241 tatattaaat ggttcaaatg cttatgaaga agcctttagc aaacacaaaa aaaattctca
     6301 aatcgaacta aaaaatgaga ttgaacatcc tgaaatttta gcttttatag aaaataattt
     6361 ccaaaaacaa atcaaagaag ccatcaatca aatggcaaaa agcgaaagag caagcgaact
     6421 aaataaaatc gctaaagaaa ttttaaatct tgaaatcact aaagactgga gtgaagaaag
     6481 tgtcttaaat accttagcta aagtcaaacg caaacttatt cgtgagcaaa ttttaaatga
     6541 aggcaaaaga gctgatggta gaagtttaaa cgaggttcgt cctattagta tagaaaccaa
     6601 catcttacca aacgctcatg gttcttgtct tttcactcgt ggacaaactc aagccctagt
     6661 ggttgcaacc ttaggcggag aaaacgattc tcaaatgata gacttgctta cagaaaaaaa
     6721 tcctataagc gaacgcttta tggtaaatta taattttcca ggtttttcag taggcgaagc
     6781 aagtcctatc aaagctccag gaagaagaga actaggacat ggaaatttag ccaaaagagc
     6841 actttatcca agtgtggatg aaaactatcc ttatgtaatc cgcttagtta gtgaaatttt
     6901 agaaagcaat ggctcaagtt ccatggcaac ggtttgtggc ggatctttag ccttaaaagc
     6961 agcaggagtg ccaagcttaa aacttgttgc aggagtagcc atggggctta tctttgaaga
     7021 taacaagtat gctgttttaa cagatatcat gggacttgaa gatcatgatg gggatatgga
     7081 ctttaaagta gcaggaagca aagacggcgt tactgctctt caaatggata taaaactagg
     7141 tggaatcgat caagaaatac taaaacaagc tttataccaa gccaaagaag gaagaattca
     7201 cattctaaat atcatggaag aagccgccaa agaaatcata gtcaatgaag aagttttacc
     7261 taaacttgag ctttttagcg ttgatccttc aaaaatcgtt gatatcatag gacaagccgg
     7321 aaaaaccatc aaagaaatcg tagaaaaatt tggcgtttct atagacttag atcgcgaaaa
     7381 aggtgaagta aaaatagcag gtagtcaaaa cgagcaaatc aaagccgcaa aagactacat
     7441 cataaacatc acaagctctc aaaaaggaac taaaaaaggc cctaaagaca aagatatatc
     7501 aggctttgaa cttgggcaag aatttcaagg tattgttaaa aaaatcgctc cttttggagc
     7561 ctttgtggaa cttaaaaatg gtgttgatgg tttattgcat agttcaaaaa tcaagcatct
     7621 taatttaagc gaaaaccaaa gtttaaaggt gaaaatcagc gaaattaaaa acggaaaaat
     7681 ttctgtggat ttgtgcgagt gagtgaattt ttaactcatc cttttgagcc tttttttgac
     7741 aaagattcta aaatcttaat tttaggatct tttccttcta ttaaatcaag acaagatggc
     7801 ttttattatc aacacccaag aaatcgtttt tggcctatac tagaaacact ttttaatgca
     7861 aaattagaaa atatcacaga acaacaagcc tttttaagaa aaaaacatat cgctctttgg
     7921 gatgtacttc aaagttgcaa gataaaaaat tcagatgata aaacaataag ttatgcaaaa
     7981 gccaatgatt taaacctaat cctttctcaa accaaaattc aagccatttt tactacagga
     8041 caaagtgctt atagattttt tgttaaattc caccctcgct tagaagccat agccctaccc
     8101 tcaacttctc ctgcaaattt aaatttttct tttgaacagc ttttacaaaa ctatgaaata
     8161 atcaaaaaat ttacaaaata aaagaatatt ttaatttttt agattttaga ataattataa
     8221 aaatttaagg agttaaaaat gccttttgta aatatacgca tcaccaaaga aaacggagaa
     8281 cctacaacag aacaaaaaca agagcttatc gcaggagtaa cggatttact tgctaaggtt
     8341 ttaaacaaaa ataaaagctc gactgtggta attatcgatg aaatcgatac ggataattac
     8401 ggactaggtg gaaaaagcat tacccaagca agaaaagaaa aaagctaact tacatctagc
     8461 ttttgtgtgt tatccttaaa ttcaaattcc actctcttag ccccaaaacc tttagcaata
     8521 gcttctaaag tatccttagc acttttatgg attttgcttt ctaaattttg gataagattt
     8581 aaagacaagt ctttaacctc atctttggct tcttttatga gtttgttttt atcactttca
     8641 ctaaaactaa tccccgtact attgatagaa tcaggcagta aaaaaggtaa aaatttagca
     8701 tttttttcat cataaaattt catatctatg atgctgtgtt tgtatctaca ctctggcatg
     8761 atgatcttat aagcatcgtc ccctaaaggc aaaatatcaa agtttttatc ccttaaatca
     8821 tacaagaaag tgatctcaaa ttcaaaaatc aaagcaatct gtctttcact caaagaccat
     8881 cctaaaagat ttttccaaat tccattaaaa gcgctatctt ttttagtgac aatctcttta
     8941 ctaaaaactt gaaaaacact taattctcct atggatttaa gttgcatgat atcgctaaaa
     9001 ctttgcgtgc ttttttcttc tattttaggg cttttatact gcctaaaaag cactacaaac
     9061 aaaagcacaa gtaaaatcat cactaaaaca aataaaatca tttccatttt aaacctttct
     9121 aaatttataa accttgattt gaaaagatat attttttctc aaacgccaag aaaataaaag
     9181 cattaatgat aaaaatcaaa cacacaaaag taaaaacaaa ttccacgcta aaatgagaag
     9241 ccataagccc tccgccaaaa gcaccgcaaa aatttcccaa aaattgacaa gtttgattaa
     9301 aaccaaaaat cacacttaaa tttttagcac tcacactttt tttaagcaag gcattcacac
     9361 aaggcaaaag ccctccaagt cctacaccta taagtaaacg cacgaaaata agcgtataaa
     9421 cattacttgc tacagcctgc aagtaaaagc aaattccaca aaatatcaaa gctccaaaaa
     9481 taatcttact aggccctatc ttatcggcga tttttccaag ttttggtgcg aaaaaaagat
     9541 tgctaatccc acttgcagcc accactatac ccgcccaaag agccaaattt ccaccttgat
     9601 gaatttgctc aacatagata cttaaaatcg gcatcactcc aaaagtacca aattgtatca
     9661 caaaagtagt gataaaaaga acgatgataa gggttttgtt ttctttcact ttttgagtat
     9721 ttttcttcgc ctctttttga atttttctcc catggatgaa aaaataaatc gtcacaaaag
     9781 aacaagcgat caaaaaagcc accacatcaa aaaccgcact aatgctaaaa aattcagcca
     9841 caaagccacc aaacaaaggc ccaagtaaac ttccacttat agaagccgta gaaagagttc
     9901 ctaaagcata agccactttt tctttaggcg ctatcacggc gataaacaca acagcagcag
     9961 aagtaaaacc tgaaattatc cctgttaaac cccgtacaaa aaccacttct aaagcactat
    10021 gagcaaagct aagccataag gttaaaacgg acatcccaaa acttgcacga agaagcatat
    10081 ttttataacc atactttgca cccaaaaaag cccacaaagg tgaaaaaaca gccataaaaa
    10141 gcggagtgat cccaaaagca agtcctgaat aaaacgctat ctcgctcgta tcaacatgtc
    10201 ctagttcttt gatataaaaa ggcaaaatcg gagcgatttg actaagcccc atacttgtgg
    10261 taaaaacacc aaaccaacac acaagcaaag ttctattgaa attttccatg gatttattgt
    10321 atgatatttt ttataatttt taattaaaac tcaaggataa aaatgaaaaa aatactcttt
    10381 atatgcttag gcaatatatg ccgttcgcct atggcagaat ttatcatgaa agatcttgtc
    10441 aaaaaagcaa atttagaaaa agaatttttt ataaacagtg ctggaacttc aggagaacac
    10501 gatggagaag gtatgcacta tggcaccaaa aacaagcttg ctcaacttaa catagaacac
    10561 aaaaacttca caagcaaaaa actcactcaa aagctttgcg atgaaagcga ttttttaatc
    10621 accatggaca attctaactt caaaaatgtt ttaaaaaact tcaccaacac ccaaaacaaa
    10681 gttttaaaaa tcactgattt tagtcctagt ctaaactacg atgaagttcc tgatccttgg
    10741 tatagtggga attttgatga aacttataaa attttatccc tagcttgtaa aaatttactt
    10801 gtttttttat caaaataatt taaaacaact atatattact tctcgtttac tttttaggct
    10861 tatacttcta aacgaaccga aaaacattca taagaaaaac tccttaaaat tacacgccta
    10921 gcttaaatcc ctttagctag gcttttcttt agatgttttt atccttcgga tttaaaattt
    10981 ttactatttt aagtgcttct taagaaaaaa ctccaaattt atgtgctaca attacgatgt
    11041 tttattaatt tttgacaagg agaattctca tgaaactagt taaacttagt ttagttgcag
    11101 ctcttgctgc aggtgctttt tcagcagcta acgctactcc acttgaagaa gcgatcaaag
    11161 atgttgatgt atcaggtgta ttaagataca gatacgatac aggtaatttt gataaaaatt
    11221 tcgttaacaa ctcaaattta aacaacagca aacaaaatca caaatataga gcacaagtta
    11281 acttcagtgc tgctatagct gataacttca aagcttttat tcaatttgac tataatgctg
    11341 ctgatggtgg ttatggtgct aatggaataa aaaatgatca aaaaggactt tttgttcgtc
    11401 aattatactt aacttataca aatgaagatg ttgctacaag cgtaatcgct ggtaaacaac
    11461 aactaaacac tatctggact gacaatggag ttgatggttt agtaggaaca ggtatcaaag
    11521 tagtaaacaa cagcatcgat ggtttaactc tagctgcttt tgctgtagat agctttatgg
    11581 cggaagagca aggtgcagat ttattaggaa aaagtactat acctacaaca cagaaagcag
    11641 ctccttttca agcagattca ttaggaaatc tttacggtgc tgctgctgta ggttcttatg
    11701 atcttgctgg cggacaattt aatccacaat tatggttagc ttactgggat caagtagcat
    11761 tcttctatgc tgtagatgca gcttatagta caactatctt tgatggaatc aactggacac
    11821 ttgaaggtgc ttacttagga aatagccttg atagcgaact taatgataaa agacacgcta
    11881 atggcaattt atttgcttta aaaggtagca ttgaagtaaa tggttgggat gctagccttg
    11941 gtggtttata ctacggtgat aaagaaaaag cttctacagt tgtaatcgaa gatcaaggta
    12001 atcttggttc tttacttgca ggtgaggaaa ttttctatac tactggttca agactaaatg
    12061 gtgatactgg tagaaatatc ttcggttatg taactggtgg atatactttc aacgaaacag
    12121 ttcgcgttgg tgctgacttc gtatatggtg gaacaaaaac agaagctact aatcatttag
    12181 gtggtggtaa aaaacttgaa gctgttgcaa gagtagatta caaatactct ccaaaactta
    12241 acttctcagc attctattct tatgtgaacc tagatcaagg tgtaaacact aatgaaagtg
    12301 ctgatcatag cactgtaaga cttcaagctc tttacaaatt ctaagaagct ttcaagtcta
    12361 acttcaaggc ggagttttgc tccgcctttt tttatgcctg atttttaaaa cttaaattta
    12421 tataaaaaat tttcccaagc taaaacgctt taggaaaatt aagacttaaa ccaattagtg
    12481 attttttcaa aaagcccttt ttgctcttga tgcataccat ctttgatgcc aaaactttca
    12541 cttagttttt ctaaaagttc tttttgttca tcgtttaaag aagttgggaa tttgatagaa
    12601 atttgaacga tttgatttcc catgcgagaa ttatgaacat cttttacccc ttctttttca
    12661 agaacaaatc tttgtccatc tttagcaccc tttggtaaat ttaaggtcgc ttcaccgcgt
    12721 atggtgggta cttttatact ctctcctaag atagcttgag taaaaaacac tggaaattct
    12781 atatatatat catcatcatc tctgataaaa gtatcatctt cagcggcgat gatcttaaca
    12841 tacatatccc ctctagtacc attttttaag atattacctt tagcattgac acgaagcttc
    12901 atacctgtat ctacaccttc tgggatatta agctcgacac tatctttgct ttcattataa
    12961 cccaaacctt tacaatcact acatttttca ctagcttttt ctccacttcc ttgacaatca
    13021 ggacaagttt gtgcaaaagt gataaaacct tgagaaactc caacttgtcc cctaccttga
    13081 cattttggac aagtttgaag ttttccatct ttagcccctg ttccattaca agttttacaa
    13141 gagcatttat aagtaaagtc tatatttttc ttacaaccaa aaaccgcttc tttaaaactt
    13201 aattttaaat taacgataaa atctgaaggg attttctcat catttgaact ttttctacga
    13261 cgtgatgagc caaagccttc tccaaaaaaa ctagaaaata tatctcctaa atcctcaaaa
    13321 ccaccaaaac ctgagctact agaaccaaat ccaccgcctt ttaaagcatc ttttccgtat
    13381 ctatcataaa tagctcgctt ttcatcattg cttaaaactt cataggcttc attaacaagc
    13441 ttgaatttat cttctgcttc tttatcacct tggtttctat caggatgata ttttaaagcc
    13501 atttttctat aggctttttt tatggtttct ttatcagcat tttgcgtgat ttcaagaatt
    13561 tcataataac ttatttccac attattcctt taa
//
LOCUS       DAPIWJ010000044        13346 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.044, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000044 DAPIWJ010000000
VERSION     DAPIWJ010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13346
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.044"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..1669
                     /locus_tag="RJ259_001020"
     CDS             <1..1669
                     /locus_tag="RJ259_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7366735.1"
                     /translation="GENNIGKTNFLRALNLFFNHNNGVEYNQNEDRPYHIQKGSTGGR
                     KTELIGYFTKNNVTHILKVEFHKDKIVYILNGKMVEWKVARDIVESFKLLFIEASNVN
                     MPSVISAILENDALLALDNKRKKQSEPLRTLKLFIEQSKKAIEDIEKDINIYLKQMLD
                     FDNTLKDKEIKIRFAEFEKLRDVVKTMTSVTLDDGNDHLMDHKGSGAQRIVLLSLMQY
                     ITDKITTDIIWAIDEPEAFLQPKLQKKIMEIFKNIVREKKQPIIMTTHSQYFVDFNNL
                     VNTHLFKLTKEEKIYARKKGRVFQEINTKPIYIGTAFEKLSVIKKHLGIETNDNWDIM
                     PYNILVEGEEDKKYLQMLIEILNLSMPNIIHSGGATKIAGFLEYFNNQCSYTSFKPYF
                     ICIFDNDEEGRKQYNKISKDNLYPNIKLDAKKLKRYGESIQENNRDIWEIEDFMPIKI
                     IVDAVNIILKYKQYNTITNSQISDRKKLAFKNMSILDYLEKCIADRNEEKERFILNTE
                     SRKKEICQNAFRAREKYTKNDLEDYHVDFMNELIDSFNKVDLIKKDN"
     gene            1672..4767
                     /locus_tag="RJ259_001021"
     CDS             1672..4767
                     /locus_tag="RJ259_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HDV7366736.1"
                     /translation="MSKAKTSEFDLEQFVISSLLEHGWCYEKPVRATDEVLLETSLVN
                     ALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNINTTKDGESRADI
                     INLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATIN
                     SAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSSDGINYAPNK
                     SLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYHQYYAVNK
                     AISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITDRNDLD
                     DQLFGTFASCANLLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPENDNVFECLS
                     LRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALPNATYIGF
                     TGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGKRLVNE
                     LDEKLENQDSQKAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMIVSISRS
                     VAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANRMR
                     NIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVV
                     DYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQMLPNDYEKYFELD
                     TGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAI
                     KARFLKFAKENENENLLNQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLL
                     EVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKKYNNKLISSSEA
                     LDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKLLALVSEILQ
                     IIKNNVSIDWMIKENVRARLRVAVKRVLNKYGYPPDMQQLAIDGVLAQAEILAKELAN
                     E"
     gene            4995..6071
                     /locus_tag="RJ259_001022"
     CDS             4995..6071
                     /locus_tag="RJ259_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HDV7366737.1"
                     /translation="MQYKILENNRIASKGYAMLSKDAKFTPFEFSRHAIGDNDILIKI
                     LYAGICHSDIHTARSEWGEATYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVNS
                     CGECDACKRSQEQFCENGKTIFTYNSCDVFHGNENTYGGYSNNIVVSEKFAVCVPKDA
                     PMEKVAPLLCAGITTYSPLKFSNIKEGSSVAVAGFGGLGMMAVKYAVKMGAKVSVFAR
                     NENKKADALAMGVSSFYTSCDKNAVKERFDLIISTIPTPYNPAIYLDLLKFGGEMAIV
                     GLPPHEVAPSISVITFVHKAGKKVYGSLIGGIAETQEMLDFSLKHGIYPETELITPQE
                     IDKAYENLTSGKAKFRYVIDMTKE"
     gene            complement(6073..6522)
                     /locus_tag="RJ259_001023"
     CDS             complement(6073..6522)
                     /locus_tag="RJ259_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HDV7366738.1"
                     /translation="MLELIGELSLQNYMGEWLEIARKPAFFQKSCLNSKAKYELKYKN
                     GIPYVEIENFCSKKNEISSIKGKAKIVSNRQLAVRFNIFMNLFNKVNYEIIFVDSEYK
                     VAIVGSPDKKYLWILARNIIDEKNIKELLNIAKQRGFDISDVVFDKY"
     gene            complement(6510..6857)
                     /locus_tag="RJ259_001024"
     CDS             complement(6510..6857)
                     /locus_tag="RJ259_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDV7366739.1"
                     /translation="MTKENSPCNFEECGFNYTLALINGKYKMSILYCLFRYEIVRYNE
                     LKRFLSSISFKTLTNTLRELENDGLIIRKEYAQIPPKVEYSLSKRGQSLIPILQAMSK
                     WGKKDKKGKKCLN"
     gene            6957..7535
                     /locus_tag="RJ259_001025"
     CDS             6957..7535
                     /locus_tag="RJ259_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDV7366740.1"
                     /translation="MKNILLLNGAKEFGNSKGQLNLTLHNHALEILKTLGYEVDQTHI
                     DQGYDPKEEIQKFIKADAVIYQMPAWWMGEPWIVKKYIDEVFGLGAGVLFKNDGRTHE
                     NPSKNYGKGGLDHGKKYMFSLTWNAPLEAFNDKNEFFEGKGVDMVYWHLHKAHEFIGM
                     KALPTFMCNDVVKNPQVEKYLNEYELHLKKIF"
     gene            7568..8464
                     /locus_tag="RJ259_001026"
     CDS             7568..8464
                     /locus_tag="RJ259_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDV7366741.1"
                     /translation="MTRTKYLYILLVIAMFLWGSSWPTSKILANYTDTSIITFWRFFF
                     VVLGSFFVLNFLKIPLKIEKTALKWVLIAGVLNGLYAFVFFIAIKHGLAGKGGVLVTT
                     MIPIFSYLIFMIAIFFQKNKKSTHKITKSEILGLFLGLLSGFCLLNLGSLEDLFGKFN
                     ILFLTCSFIWALMAVFNHKAKGAHPLAINFYINLISILMFSWILFDVKSYEIFHFEFK
                     FWISMFVVAFLSTIIGTSIYYYGIHILGSVKANSFVLITPASALICSYFILDEVPNAL
                     TLLGCALAIGAIYFINIYGKKA"
     gene            complement(8461..9426)
                     /locus_tag="RJ259_001027"
     CDS             complement(8461..9426)
                     /locus_tag="RJ259_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HDV7366742.1"
                     /translation="MSIKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANIL
                     LGNKQDEAGIELCLKGGKYEFLDENYFVLSGAEFEAKLDNQKIKTCKVYQANKGDILE
                     LDLAKIGFRGYLCVAGGFEVKSFLNSKSSDAKMGAGVFEGRALQKDDILNTHNTFIPF
                     NLEARECENPLFKSPKEPIIRVILGTNEDAFTQKGIETFLNTTYKVGLKSDRMAIYAE
                     SSESIEHKNSADIISDPAVFGSIQVPKSGIPIILMAGRQSTGGYTKIATVIENDLSLL
                     AQAKLGSSFKFQSISMQEALELYKQREMKFKAMDQKINLDFENLI"
     gene            complement(9407..10147)
                     /gene="pxpB"
                     /locus_tag="RJ259_001028"
     CDS             complement(9407..10147)
                     /gene="pxpB"
                     /locus_tag="RJ259_001028"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HDV7366743.1"
                     /translation="MFSVHFSGSKALLLRFEQEISPQINAYVLSTEQRIQKALKEGEI
                     YGIDELVSAYASLLIYFNPCVLSLNSLLDFLEKIKKDIKLAEQNSSLCIEVPLCYDEE
                     FGLDLEFVCKHNQISKEELISLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLSSPR
                     AKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFDKEDEKNPTLLKAGMFLKFKA
                     ISKDEFFDIQEQVAKKVYQKEIYEYKNH"
     gene            complement(10157..10924)
                     /locus_tag="RJ259_001029"
     CDS             complement(10157..10924)
                     /locus_tag="RJ259_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HDV7366744.1"
                     /translation="MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPC
                     VMDETLNLAKQNGVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAK
                     GMKIQHFKAHGALYNMAAIDENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLR
                     YANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKA
                     DSICVHGDNAKALEFVKKIKENLKKEQIQICALENFI"
     gene            complement(11066..11875)
                     /locus_tag="RJ259_001030"
     CDS             complement(11066..11875)
                     /locus_tag="RJ259_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDV7366745.1"
                     /translation="MKKIISLALALALSASAAELKMATTTSTDNTGLLDALKPLYEKE
                     SGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFMKKGFGVDRTPVMYNDFIII
                     ADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWY
                     QQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGKPNLVIVNEGDDSLKNFYSVI
                     ATNPKHCKNVNYTEASKFIKWVTSDKTLNFIADFKLLNKPLFVIDAKTRKD"
     gene            11954..12640
                     /locus_tag="RJ259_001031"
     CDS             11954..12640
                     /locus_tag="RJ259_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7366746.1"
                     /translation="MDYIFDGFKQALFLLFNADESVISAIKTTLLSSSISIVLALLIG
                     FPLGFILGFFEFKLKRFIKLIVDTSLSFPTVAVGLILYALISSRGPLGEFGLLFTIKA
                     LILGQFILALPIVIALFSNLIENMNKKHFLLIKSFHLSPLKLVLTMIYELRFALISVV
                     ALAYGRIVAEVGVAMIVGGNIKYDTRTITTAISLETNKGEFASGIALALVLILIAFCL
                     NFITHKLKRT"
     gene            12642..>13346
                     /locus_tag="RJ259_001032"
     CDS             12642..>13346
                     /locus_tag="RJ259_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7366747.1"
                     /translation="MIEISNLFFNYQNKEVLKIKNLKLDTSKISILMGANGSGKSTFL
                     RILKFLEGDFSKNISYFGNFKPNNKQKREIYLLFPEPILLNRSVRANFLFTLKTYGIK
                     EDIEERIKESLMFLNLDESFLSKHPNELSSGQSQKIAFAIALSVRAKYYLLDEPSAFL
                     DKNTTLLFKKTILKMHENFNTGFLIASHDKHFLDSLAQKKLYLHSGEILEFENTNVFE
                     LENQGVKFCNFIDFSNC"
BASE COUNT         4679 a         1932 c         2224 g         4511 t
ORIGIN      
        1 cggtgaaaat aatattggaa agactaattt tttgagagcc ttaaatttat tttttaatca
       61 taataatggt gtggagtata atcaaaatga agatagacca tatcatattc aaaagggatc
      121 aactggtggt agaaaaacag aattaatagg ctattttaca aaaaataatg tcacacatat
      181 tttaaaagtt gaatttcata aagataagat tgtgtatata ttaaatggaa agatggttga
      241 atggaaagtt gctagagata ttgtagaaag ttttaaactt ttatttatag aagcaagtaa
      301 tgtgaatatg cctagcgtaa tttctgctat tttagaaaac gatgctttgt tagccttaga
      361 taataaacga aaaaagcaaa gtgagccttt aagaacattg aaattattca tagaacaatc
      421 aaagaaagct atagaagata tagaaaagga tattaatata tatttaaaac aaatgttaga
      481 ttttgataac accttaaaag acaaggaaat aaaaattaga tttgccgaat ttgaaaaatt
      541 aagagatgtt gtaaaaacta tgacatctgt tactttagac gatggaaatg accacttaat
      601 ggatcataaa gggagtggtg ctcaaagaat agtactttta tctttaatgc aatatattac
      661 agataaaatt acaacagata taatatgggc aattgatgaa ccagaagcat ttttgcagcc
      721 aaaattacaa aaaaagatta tggaaatatt taaaaatatt gtaagagaga aaaagcagcc
      781 tataattatg acaacacatt ctcaatactt tgtagatttt aataatttag tcaatactca
      841 tttgtttaaa ttgacaaaag aagaaaagat ttatgctaga aaaaaaggta gagtatttca
      901 agaaattaac acaaaaccga tttatatagg cactgcgttt gaaaagttat ctgttattaa
      961 aaaacattta ggtatagaaa ccaatgataa ttgggatatt atgccttata atattttagt
     1021 tgaaggagaa gaagataaga aatatttgca aatgctaata gaaattttaa atttatctat
     1081 gccaaatata atacattctg gtggtgcaac taaaatagca ggttttttag aatattttaa
     1141 taatcagtgc agttatactt cttttaaacc atattttata tgtatttttg ataacgatga
     1201 agaaggtaga aaacaataca ataaaatatc aaaagataat ttatatccaa acataaagct
     1261 agatgcaaaa aaattaaaaa gatatggaga atcgatacaa gaaaataata gagatatttg
     1321 ggagattgaa gatttcatgc ctataaaaat aatagtagat gcagttaata ttatacttaa
     1381 gtataaacaa tacaatacga taacaaactc tcagataagt gatagaaaaa aactagcatt
     1441 taaaaatatg tcaattttgg attatttaga aaaatgtatt gctgatagaa atgaagagaa
     1501 agaaagattt atattaaaca ctgaatcaag aaaaaaagaa atttgccaaa acgcatttag
     1561 ggctcgtgaa aaatatacaa aaaatgattt agaagattat catgttgatt ttatgaatga
     1621 acttattgat agctttaaca aagtagattt gataaaaaag gataactaaa aatgagcaag
     1681 gcgaagacta gtgagtttga tttagagcag tttgttatat catcactact tgagcatggg
     1741 tggtgctatg aaaagcctgt aagagccact gatgaagttt tgctagaaac tagccttgta
     1801 aatgcacttt gtaggctaaa tccacagctt gatttatcaa aagctaatga aatttataag
     1861 gagctaaaaa gcaaaaatca tcttagcctt ttagatagca atgaaaactt tcattataag
     1921 cttgtaaatg gggtaaatat aaacactaca aaagacggcg aaagcagagc tgatatcata
     1981 aatctaattg attttaataa tgcaagcaac aatgaattta tagcaacaaa ccagctaagc
     2041 atcacagaag ctaaagaaaa caaaatcccc gatgtagtgc tatatataaa tggaattccg
     2101 cttgttttaa tggagctaaa aagcccaagc gatgaaaacg ccacgataaa ctcagcttat
     2161 aatcaaataa acacttataa acaaacaatc ccaagtattt ttacatataa tgctttttgt
     2221 gtgataagcg atgggtattt tgctagggcg gggagtattt cggctgattt ttcaaggttt
     2281 atggcgtgga aaagtagcga tgggataaac tacgctccaa acaagtcttt agaaattaaa
     2341 accttaatag atggtatgct aaatccaaaa accttgctag atatcatttg caatttcata
     2401 gtttttgaaa aagagcaaat aagagattta aatggtattt taagtataaa aactaccaaa
     2461 aaaatcgctt gctatcatca atactacgca gtaaataaag ccattagtag aacaatcaca
     2521 gcaagtagca aagacggaga taaaaaaggt ggcgtggtgt ggcatacgca aggtagtggg
     2581 aagtctttgt ctatggtgtt ttatagtgct aaagcgataa aggctttaaa taatcctacg
     2641 attttgctta tcacggatag aaatgatcta gatgatcagc tttttggtac ttttgcaagt
     2701 tgtgcgaacc ttttaagaca agagccaaaa caagcaaacg ataaagagca tttaaaagag
     2761 cttttaaggg tagctagtgg tggagtggta tttactacta ttcaaaaatt tagtccagaa
     2821 aatgataatg tatttgagtg cttatcgctt agagataata tcatcgtaat tgcagatgaa
     2881 gcacacagaa cccaatacgg ctttgatgca aaagtagtag aagaaaagtc aaaaagtggc
     2941 gatgtgctag ggcaaaagat agtttatggt ttcgcaaaat atctgcgtga tgctttgcca
     3001 aatgctactt atataggatt tacaggaacg ccaattgaaa gccatgatat aaacacccct
     3061 gcagtttttg gaaactacat agatatatat gatatatcaa gagctgttga agatggtgct
     3121 actgtgagta tatattatga aagcagactt gccaaaatag agctaagcga agaaggaaaa
     3181 aggcttgtaa atgaattaga tgaaaagctt gaaaaccaag atagccaaaa agcaaaagct
     3241 actaagctag aagctttagt aggtagcaca agcagactaa aacaaatcgc taaagatata
     3301 gtaaaacact ttgaaacaag gtctagtaag ctcggcggaa aaggtatgat agtaagtata
     3361 agccgaagcg tagctataaa actatatgat gaaatcataa aaataagacc aagttggcat
     3421 agcgatgagc taagtagcgg ggctataaaa gtagtgatga cttcaagctc tagcgatggg
     3481 gtagagttta gtaaacatca tacaagtaag attcaaaagc agtttttggc aaatcgtatg
     3541 agaaatatag acgatgaatt aaaactagtt atagtggtgg atatgtggct aactggcttt
     3601 gatgtgccat cgcttcatac tctttatata gataagccta tgaaagggca taatctaatg
     3661 caagctatag ctagagtaaa tagggtttat aaggataaac ctagtgggct tgtggtggat
     3721 tatcttggga ttgcaagtga tttgaaaaaa gctttatcat tttatagtga aagtggtggc
     3781 aagggcgata taatcactac tcaagaagac gctgtaaaag tgatgataga aaagcttgaa
     3841 atcgtagaac aaatgctgcc aaatgactat gaaaaatact ttgaacttga tacgggggct
     3901 aaacttgaat atatacttga tgtagaagag catatattat caaatgaaga tggtaagaac
     3961 agatttataa aagaatttgc agcacttgat aaagcctaca cgatagctat gccacacgaa
     4021 aaagctttga gcataaagaa taaaatcgct tttatgtatg cgataaaggc taggttttta
     4081 aagtttgcta aagaaaatga gaatgaaaat ttgcttaatc aagctttgat aaagcaagta
     4141 gtagataaag ctattgtatc atctaaagtg gtggatattt ttgatgctag tggtataaaa
     4201 aagcctgata tatctatact ttctgatgag tttttactag aagtaaagaa tatgaagcgt
     4261 aaaaatttag cctttgaaat gctaaaaaag atactaaatg atgagataaa agcaagagaa
     4321 aagctaagcc taacaaaggc taaaaaatta gcacaaatgc ttagtgatgc tatcaaaaaa
     4381 tataacaata agctaatctc atcaagcgag gcactagatg agctaataaa tatgagtaaa
     4441 agcatagtaa gtatggaaga tgaggctaag aagttaggtt taaaagacta tgaatacgcc
     4501 ttttactcag cacttgcttg taatgatgag tatgaaaaga ttttaggcaa tgaaaaacta
     4561 ttagcactcg ttagtgaaat actgcaaatt atcaaaaaca atgtaagtat agactggatg
     4621 ataaaagaaa atgtaagagc aagattaaga gtagctgtaa aaagagtgtt aaataagtat
     4681 ggttatccac ctgatatgca acaacttgca attgatggag ttttagctca agctgaaatt
     4741 ttggctaagg aattagctaa cgagtagaat ttaagcgata ctgaaattaa atttgtttgt
     4801 attattttct tttatcttta ttatagatag cttgatttgt cgttgcaact atgtctttgt
     4861 tataaaattt gcttaatttt atacaatttc actagtatcc agtatttata ctaattttta
     4921 aaaaattatt ttcactcttg acttatagct actctaatgt tttataatta taaaaaatca
     4981 aaaaaggagc aaaaatgcaa tacaaaattt tagaaaacaa tcgcatcgca agtaaaggct
     5041 atgcaatgct tagcaaggat gcgaaattta caccctttga atttagccgc catgctattg
     5101 gcgataatga tattttgatt aaaatcctat atgcaggcat ttgtcatagc gatattcaca
     5161 ccgcaagaag cgagtgggga gaagctactt atccttgcgt gcctgggcat gagatagcag
     5221 gagaagttat cgctgtgggt aaaaatgtga gtaaatttaa agtaggagat tacgcagggg
     5281 ttggttgtat ggtaaattca tgcggtgagt gcgatgcttg caaacgctca caagagcagt
     5341 tttgcgaaaa tggcaaaacc atctttactt acaatagttg tgatgtattt catggcaatg
     5401 aaaacactta tgggggctac tcaaacaaca tagttgtaag tgaaaaattt gccgtttgtg
     5461 tgccaaaaga tgcaccgatg gaaaaagtcg cgcctttgct ttgtgcagga attaccactt
     5521 attctccgct taaattttca aatatcaaag aaggctcaag cgtagcagta gcgggatttg
     5581 gcggacttgg tatgatggcg gttaaatatg ctgtgaaaat gggtgcaaag gttagcgttt
     5641 ttgctagaaa tgaaaacaaa aaagccgatg ctttggctat gggtgtaagc tcattttaca
     5701 caagctgcga taaaaacgct gtaaaagaac gttttgattt aatcatctca accattccaa
     5761 cgccttataa tcctgctatt tatttggatt tgcttaaatt tggcggtgaa atggcgatag
     5821 tgggtttgcc acctcacgaa gttgctccaa gtatcagcgt gataaccttt gtacataagg
     5881 caggtaaaaa ggtttatggc tcgttaattg gtggtattgc tgaaactcaa gaaatgcttg
     5941 atttttcttt aaaacacgga atttatccag aaaccgagct tattacccca caagaaatcg
     6001 ataaagctta tgaaaatcta acctcaggaa aggctaaatt tcgctatgtc attgatatga
     6061 caaaagaata atttaatact tatcaaaaac cacatcgcta atgtcaaatc ccctttgctt
     6121 agcgatgttt aaaagctctt ttatattttt ttcatctatt atatttcttg ctaaaatcca
     6181 aagatatttt ttatcaggac tacccacaat ggcaacttta tactcgctat caacaaaaat
     6241 gatttcataa tttactttat taaaaaggtt cataaagatg ttaaatctca ctgctaattg
     6301 cctatttgaa acgatttttg ccttaccctt tatacttgaa atttcatttt ttttactgca
     6361 aaaattctca atttctacat aaggaatgcc atttttgtat ttaagctcgt attttgcctt
     6421 tgaatttagg caagattttt gaaaaaaggc cggttttcta gctatttcaa gccattctcc
     6481 catataattt tgcaaagaaa gttcgccaat taattcaagc attttttccc ttttttgtct
     6541 ttcttgcccc atttgctcat agcttgtaaa atgggaatta aactttgtcc acgtttggat
     6601 aagctatatt ctaccttggg tggaatttga gcgtattctt ttctgataat taaaccatcg
     6661 ttttctagtt ctcttaaggt attggttaaa gttttaaaag atatggagct taaaaagcgt
     6721 ttgagttcat tataacgcac gatttcatag cgaaataagc agtataaaat actcatttta
     6781 tattttccat taattaatgc tagagtatag ttaaatccac attcttcgaa attgcacgga
     6841 gaattctctt tagtcattta acattccttt agtatagtat attactttat tttctgtatt
     6901 gaaaatgata ttatgctaag ttataattgt atcataaaat ttaaaaaagg ataaaaatga
     6961 aaaatatact cttgcttaat ggtgctaaag aatttggaaa ttcaaaagga caacttaatt
     7021 tgacattgca taatcatgct ttagaaattt taaaaacact aggatacgag gtagatcaaa
     7081 ctcacataga tcaaggatat gatcctaaag aagagataca aaaatttata aaagctgatg
     7141 ctgtgatcta tcaaatgcca gcttggtgga tgggggagcc ttggatagtt aaaaaatata
     7201 tcgatgaagt gtttggtttg ggtgctggag tgctttttaa aaatgatgga agaactcatg
     7261 aaaatcctag taaaaactac ggaaaaggtg gtttagatca tggtaaaaaa tacatgtttt
     7321 ctctcacttg gaatgcacct cttgaagcct ttaatgataa aaatgaattt tttgaaggaa
     7381 agggtgtaga tatggtgtat tggcatttgc ataaggctca tgaatttata ggtatgaaag
     7441 ctttaccaac ttttatgtgt aatgatgtgg taaaaaatcc tcaagtggaa aaatatctaa
     7501 acgagtatga actacacttg aaaaaaattt tttaaaaaat ttgacttaaa aatttcaagg
     7561 tgtaacattg actcgaacaa agtatttgta tatcttgctt gttattgcta tgtttttatg
     7621 gggctcatct tggccaacat ctaagatttt agcaaattat acggatactt ctattattac
     7681 cttttggcgt tttttctttg ttgtattggg ttcatttttt gttttaaact tcttaaaaat
     7741 tcctcttaaa atcgaaaaaa ctgccttaaa atgggtattg atagcaggag ttttaaatgg
     7801 gctttatgcc tttgtatttt ttattgctat aaagcacggc ttggcaggca aaggaggagt
     7861 tttagtaacc actatgattc ctattttttc ttatttgata tttatgatag cgatattttt
     7921 tcaaaaaaac aaaaaatcaa ctcacaagat cacaaagagt gaaattctag gcttattttt
     7981 aggtttatta tctggatttt gtttgctaaa tttagggagt ttagaagatt tatttggtaa
     8041 atttaatatt ttatttttaa cttgttcttt tatttgggct ttgatggcag tgtttaatca
     8101 taaagccaaa ggagctcacc ctttggcgat taacttttat attaatctca tttctatttt
     8161 aatgttttct tggatattgt ttgatgtaaa aagttatgaa atttttcatt ttgaatttaa
     8221 attttggatc agtatgtttg tcgtggcttt tttatcaact attataggaa ctagtattta
     8281 ttattatggg attcacattt taggaagcgt taaggcaaat tcttttgttt taatcactcc
     8341 tgctagtgct ttaatttgta gttattttat actagatgag gtgccaaatg cacttacctt
     8401 gttaggttgt gccttggcta taggtgctat atattttatc aatatttatg gcaaaaaagc
     8461 ttagattaaa ttttcaaaat caagattgat tttttgatcc atagctttaa atttcatttc
     8521 tctttgttta taaagttcta aggcttcttg catgctaatg ctttgaaatt taaagctaga
     8581 acctaactta gcttgtgcga gtaagcttag atcattttct ataaccgtgg ctatttttgt
     8641 atagcctcct gtgctttgtc ttcctgccat taaaatgata ggaataccac tttttggcac
     8701 ttgtatactt ccaaaaaccg caggatctga gatgatatct gctgagtttt tatgctctat
     8761 actttcacta gattctgcat aaattgccat tctatcgctt tttaaaccta ctttataagt
     8821 agtatttaaa aaggtttcta tgcctttttg ggtaaaagca tcttcatttg ttcctaaaat
     8881 aacgcgtata ataggctctt tagggctttt aaaaagagga ttttcacatt ctctagcttc
     8941 taaattaaaa ggtataaaag tattatgagt atttaaaata tcatcttttt gcaaagctct
     9001 tccttcaaaa actccagctc ccattttagc atcactggat ttagagttta aaaaactttt
     9061 tacttcaaag ccacccgcta cgcataaata cccacgaaaa cctatttttg ctaaatcaag
     9121 ttctaaaata tcgcctttat ttgcttgata tactttgcaa gttttgattt tttgattatc
     9181 aagctttgcc tcaaattcag ctccacttaa aacaaaataa ttctcatcta aaaattcgta
     9241 ttttccaccc tttaaacaaa gctcaattcc tgcttcatct tgtttgtttc caagcaagat
     9301 atttgccatt cttaaagcat cttcatccat agctccactt cttgctatgc caaatttagc
     9361 aaattttttt ctaccaaagt cttgcaaact tgaatttata gatgcttcaa tgatttttat
     9421 actcataaat ttccttttga tagacttttt tagcaacttg ctcttggata tcgaaaaatt
     9481 catcttttga aatggcttta aattttaaaa acatacccgc ttttaaaaga gtgggatttt
     9541 tttcatcttc tttatcaaaa aattccaaag gtgttctagc aatgatttgc caaccccctg
     9601 gacttgatat gggataaact cctgtttgtt tatcggctat acctacactt ccagcttcta
     9661 tttttgctct agggcttgaa aggcgtgggg taaaaagtct ttcatctaaa cctccaagat
     9721 aaggaaaacc tgccataaaa cctagcataa aaacaagata ataaggttta gtgtgaagag
     9781 atataagctc ttcttttgaa atttgattgt gtttgcacac aaattctaaa tccagcccaa
     9841 attcttcatc ataacaaagt ggaacttcta tacaaagact tgagttttgt tctgcaagtt
     9901 taatatcctt tttaattttt tccaaaaaat caagcaagga atttaaagaa agcacgcaag
     9961 gattaaaata tataagcaag cttgcataag cacttaccaa ctcatcaatc ccataaattt
    10021 caccttcttt tagggctttt tgtatccttt gttctgtgct taaaacatag gcattgattt
    10081 gaggtgaaat ttcttgctca aaacgcaaaa gcaaagcttt acttccacta aaatgcacac
    10141 taaacattgc taaaacttat ataaaatttt ccaaagcaca aatttgaatt tgctcttttt
    10201 ttaaattttc tttgattttt ttaacaaatt ctaaagcttt tgcattatcc ccatgaacac
    10261 aaatactatc ggcttttaaa tcaatttctt tgccatttat gcttgtaact ttgctttctt
    10321 ttatcatttt tatcacgcgt ttgatagcta aattttcatc gtgtattaac gccccttcta
    10381 attttcttga aactaaagtg ccatcatcat tataggcacg atctgcaaaa acttcattag
    10441 catatcttaa accctttttc ttagctgctt cattcatagc agaattacta agccctagaa
    10501 aaataatatt ttcatcaaaa ctcgccactg cctcacaaag tgctaaggct aaattttcat
    10561 caatagctgc catattataa agcgccccat gggctttaaa atgctgtatt ttcatacctt
    10621 ttgccttagc aaagccaaat aaagctccta gttgatacaa ggcatagttt ttagcctctt
    10681 caaagcttat ttgcatattg cgtcttccaa aacccaaaag atcaggataa gatggatgtg
    10741 ctcctatgca aacaccattt tgcttggcta aatttaaggt ttcatccatc acacaaggat
    10801 cacccgcatg aaagccacaa gcgacattta ctgaacttac aaattttaaa atttcttcat
    10861 ccattcccat tttataggcg ccaaaacttt cccctaaatc actatttaaa tccactttga
    10921 acattatttg accttgtata tttaattatt gattttatta tatctaaaga agaattttaa
    10981 ataagctaaa agttttgaaa aataaataaa aaagttacaa taagtaaaaa atgatatttt
    11041 aagcaggtta aaacctgctt aatttttagt cttttcttgt ttttgcatca attacaaata
    11101 aaggtttatt aagaagttta aaatcagcaa tgaaatttaa agtcttatca cttgttaccc
    11161 atttgataaa tttactagct tctgtataat ttacattttt acaatgctta ggatttgtcg
    11221 ctataacaga ataaaaattt ttaagactat catcgccttc atttacaatg actaagtttg
    11281 gtttgccttt ttcattggct tcatatttga tataagtacc acgatcggtt aaaatcacac
    11341 cttttttttc ttcagcgatt ttaatgcttg ctaacatacc ttgtccgctt tgttgatacc
    11401 agctttgctt ttcaggaaca ccgccaagat ttttccaaag gcttttttct ttattgtcag
    11461 tgcctgattt atcgcctctt gagatgaaag taagcttttc atttttgata agttctaagc
    11521 tttcttttaa atttttacct ttaaatttag aagctaaaga tttatctgcg atgatgataa
    11581 aatcattata catcacagga gttctatcta caccaaagcc ttttttcata aattcttttt
    11641 cagcctttgg agaatgtaca aaaagcacat cagcattgca atcttcaccc atttttaaag
    11701 ccgcacctgt tcctacggca acccatttta aggtattgcc actttctttt tcataaagag
    11761 gttttagagc atctaaaagt cctgtattgt cagtgcttgt tgtagttgcc attttaagtt
    11821 ctgctgcact tgcacttaaa gctaaagcaa gggctaaaga aatgattttt ttcatttttt
    11881 ttccttataa atttatataa aaaaatattt tagcataatt atgctaaaat tacttatttt
    11941 aaaaaggata tttttggatt atatttttga tggttttaaa caggctttat ttttactttt
    12001 caatgctgat gaaagcgtaa tttcagctat aaaaactaca cttttaagct caagtatttc
    12061 tatagtttta gctttgctta taggttttcc tttgggattt atcttaggtt tttttgaatt
    12121 taaattgaag cgttttataa aacttatagt tgatactagc ctttcttttc caacagttgc
    12181 agtaggactt atactttatg cactgatttc aagtcgagga cctttgggag aatttggatt
    12241 gctttttact ataaaggctt taattttagg gcagtttatc ttagcgcttc ctatagtgat
    12301 cgcacttttt tcaaatttga tagaaaatat gaataaaaaa cattttttac ttataaaatc
    12361 ttttcaccta agtcctttaa aacttgtttt aacgatgatt tatgaattac gctttgcttt
    12421 gattagcgtc gttgcactag cttatggacg cattgtagca gaagtaggag tagcgatgat
    12481 agtaggtgga aatatcaaat acgatactag aaccataacc acagctattt ctcttgaaac
    12541 aaacaaaggc gaatttgcta gcggtatagc tttggctttg gttttaattc tcattgcctt
    12601 ttgtttaaat ttcatcacgc acaaactcaa aagaacataa aatgatagaa atttctaatc
    12661 tttttttcaa ctatcaaaac aaagaagttt taaaaatcaa aaatttaaaa cttgatacaa
    12721 gtaaaattag catcttaatg ggagcgaatg gaagtggaaa atctacattt ttaagaatat
    12781 taaaattttt agaaggagat ttttcaaaaa atatttctta ttttggaaat tttaaaccta
    12841 ataataagca aaagcgtgaa atttatttgc tttttccaga gcctattttg ttaaatcgta
    12901 gtgtaagggc aaatttttta tttaccttaa aaacttatgg gattaaagaa gatattgaag
    12961 aacgcataaa agaaagtttg atgtttttaa atttagatga aagtttttta agtaaacatc
    13021 ctaatgaact ttcatcagga caaagtcaaa aaatagcttt tgctatagct ttaagcgtaa
    13081 gagcgaagta ttatttactt gatgaaccaa gtgctttttt ggataaaaat actacacttt
    13141 tatttaaaaa aactattctt aaaatgcatg aaaatttcaa tacaggtttt ttaatcgcaa
    13201 gtcatgataa acatttttta gattctttgg cgcaaaaaaa actttatttg cacagtggag
    13261 aaattttaga atttgaaaat actaatgttt ttgaactaga aaatcaaggt gtgaaatttt
    13321 gtaattttat agattttagt aattgt
//
LOCUS       DAPIWJ010000045        13337 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.045, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000045 DAPIWJ010000000
VERSION     DAPIWJ010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13337)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13337)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13337
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.045"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..126)
                     /locus_tag="RJ259_001033"
     CDS             complement(<1..126)
                     /locus_tag="RJ259_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HDV7366748.1"
                     /translation="MGLKAYLDGILGEDKACKFLKKQGFEILKRNFYSKFGEIDII"
     gene            complement(126..1373)
                     /locus_tag="RJ259_001034"
     CDS             complement(126..1373)
                     /locus_tag="RJ259_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HDV7366749.1"
                     /translation="MKVAILGYGTVGSAVVKFLLENDKLIRARCGQSITPVIALARSP
                     KKNALIPITHSVAEILNADVDVFVELMGGVDEAFKIVSEILKKKKAVVTANKAMLAYH
                     RYELENLAKNLAFGYEASVAGGIPIIKVLKEGLSANNILAIKGILNGTSNYILSSMSQ
                     KNMSFKQALQIAQNLGYAEADPTFDIEGQDAAHKLLILSSIAYNLKAKPEDILIEGIS
                     EIAPEDMYFANEFEFTIKLLGIAKVRENKVELRVHPTMIDKEKMLAKVDGVMNAISIN
                     GDLLDESLYYGAGAGGEATASAVISDLMDIARDQVKAPMLGFVNTLEYELLSKDEIYT
                     KYYLRVKVEDKIGVLSKITQLMSENNISIDSFLQKPKKNDENYSTLFFTTHLTYEKSI
                     QNLLEILRKQDFIKTKPFMMRIE"
     gene            complement(1377..2579)
                     /locus_tag="RJ259_001035"
     CDS             complement(1377..2579)
                     /locus_tag="RJ259_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HDV7366750.1"
                     /translation="MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGEDIIDFSMGNPD
                     GKTPQHIIDKLCESANKDKTSGYSTSMGIYKLRLAICNWYKRKYNVNLDPENEVVATM
                     GSKEGFVNLARAIINPGDVAIVPTPAYPIHTQAFIIAGGNVAKMPLAYNEKFELDENQ
                     FFENLHKTLNESIPRPKYVVVNFPHNPTTVTCEKSFYERLIATAKKERFYIISDIAYA
                     DLTYDDYKTPSILEIEGAKDVAVETYTLSKSYNMAGWRVGFVVGNKRLVSALKKIKSW
                     FDYGMYTPIQVAATIALDGDQTCVDEIRATYDKRMHILLEAFENAGWKLQKPRASMFV
                     WAKLPESKRHLKSLEFSKQLLQRASVAVSPGVGFGEAGDEYVRIALIENENRIRQAAR
                     NIKKYLKE"
     gene            complement(2591..3397)
                     /locus_tag="RJ259_001036"
     CDS             complement(2591..3397)
                     /locus_tag="RJ259_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366751.1"
                     /translation="MVKKIIILTLWVNISFAISSLELAKNLVNNPSKNSQLELLFSNN
                     SYIDNNGNCDIAKISQILKTNSLIALTLSNPQSLKLNFKAKADEVMFFKILSDVLTDA
                     GYIYFIPTDLILREGNIDYTIQVESQYVLDPGTLYNLLKENSVYIDNIKRIGAYDYEY
                     DLNFSNAVLKTNTNVNLNTPKSLEKPLKDYVLDLKNATNLIIDANDLDNWFPKIFFLD
                     KNLNLIKAVKSENKNNHFSELIPNGAIYAIVSDMYSLDNIRRGLKITLKK"
     gene            complement(3391..4329)
                     /locus_tag="RJ259_001037"
     CDS             complement(3391..4329)
                     /locus_tag="RJ259_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366752.1"
                     /translation="MLNWKKIQELNLKEVAAKTQIELDFLEALVEKNFAVLSRFNVKG
                     FVKILSREYELDFSDFNEEYEAYLNENNPTPQTKSKMITPKLDAYSQKSFNTWPFLIV
                     LIVLVIIGSGIYYFDTLRTFFKDEQNNTSATVIDIIGQAQENLKSLSGNNVVVIDNNK
                     AQETNQTESVLPSQNISLQENDKNISIENNISENNTTLLDEEKNTQIQEDTNTPKTDS
                     LKEAHFKTSTKIWIGLIDLKSLKKTSFVKEKDFNISLDKDQLILTGAAALTMFDQENK
                     EQKFPVGISKRFLIKDGKITSISAAEFVKLNKGKEW"
     gene            complement(4322..5005)
                     /gene="rlmB"
                     /locus_tag="RJ259_001038"
     CDS             complement(4322..5005)
                     /gene="rlmB"
                     /locus_tag="RJ259_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HDV7366753.1"
                     /translation="MIVYGKQIFFYILEYHKDCINELYLAKECDKITFSKIAKSGFKI
                     KKLDFKTAQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITR
                     TAYALGVGALIFIGEKLAMEGVIRTSSGAALDLPIAISNDALSVINELKQVGFYFYAS
                     DGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIIKKCDECVGIAMKNNFDSLNVSAAFA
                     ILCDRMLNA"
     gene            complement(5019..5843)
                     /gene="rsmI"
                     /locus_tag="RJ259_001039"
     CDS             complement(5019..5843)
                     /gene="rsmI"
                     /locus_tag="RJ259_001039"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HDV7366754.1"
                     /translation="MLYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRVSKSLISLL
                     NTKFHTDIHISKFIALHSHNEKEVLASIDLKIFEKNVAYLSDAGMPGISDPGKALVEF
                     AQENNITYEILPGANAALVALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNFPYPS
                     IIYESPKRILSLVEQIMILDSQREIFLIKEISKKFEKKFKGNAKELSEILKKSNLNGE
                     WVVVLQSKEQNFLQNTLCEKDIMDLELSLKAKAKLLSKINGKNAKEIYQKLLLSQD"
     gene            complement(5846..6046)
                     /gene="rpmE"
                     /locus_tag="RJ259_001040"
     CDS             complement(5846..6046)
                     /gene="rpmE"
                     /locus_tag="RJ259_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HDV7366755.1"
                     /translation="MKKEIHPEYVECKVSCACGNTFTTKSNKAELRVDICSNCHPFFT
                     GSEKIVDAAGRVEKFKKKYAMQ"
     gene            complement(6125..6781)
                     /locus_tag="RJ259_001041"
     CDS             complement(6125..6781)
                     /locus_tag="RJ259_001041"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HDV7366756.1"
                     /translation="MQFLYNKQAGEEFIQLQGENFNHLKVRRVKENSELNLRNLQDNF
                     LYNYTITNLTRNSCTLKFLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKL
                     HLVFTNFSQRNFKIDLERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVD
                     FQGEQQSHFDEKELYFIGPEGGFNNDERLLFNRKISLKSSNILKSQTAIIAIASKILL
                     "
     gene            complement(6783..7190)
                     /locus_tag="RJ259_001042"
     CDS             complement(6783..7190)
                     /locus_tag="RJ259_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366757.1"
                     /translation="MDQSYEFFLALHLYSLYASGFLMLFYLILTQGNFKTEFIFIRRI
                     RLFLPIYYLFLALIIFTGCLLSAMKQFQMNVNIWVMIFSWILIFALAIFHFVCFKKAR
                     RFRKYATFRWISCLILPFEIFLLFLPFLIERYL"
     gene            complement(7190..7615)
                     /locus_tag="RJ259_001043"
     CDS             complement(7190..7615)
                     /locus_tag="RJ259_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HDV7366758.1"
                     /translation="MQKAKILIALSFFLLVLSACSNDEKNISKTQNTDQEVVQIEQND
                     EKTELSDSNLPLPVDDEAQSLDDEHEVNPSIINSLYKQKCATCHGEKGELKPKNSTAI
                     KTLSNKIFIQKIKTIKDKNHSFLSDEQIQNLADFINKGK"
     gene            complement(7615..8196)
                     /locus_tag="RJ259_001044"
     CDS             complement(7615..8196)
                     /locus_tag="RJ259_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HDV7366759.1"
                     /translation="MIIRKLFEFENAHIVRFCSSKRCKSSIHGHSYKVEVLLESKYLD
                     NAGMVYDFGLLKTYIRQIIDSFDHAITLFKYDDAKYLEEMKKYSSRWICLPVNVSAEN
                     FCRVFFILIDALLKQTKMVNGEQGVTLQSIIVHETRTGYAQGFREDAYSELMPKISLQ
                     DIEFSNGIKAEWNDIDFYNKLKNEEIFINPKEI"
     gene            complement(8193..8936)
                     /locus_tag="RJ259_001045"
     CDS             complement(8193..8936)
                     /locus_tag="RJ259_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HDV7366760.1"
                     /translation="MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKND
                     KTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENP
                     EFIEFIQMLLKNKFEIHFESNGSIEINFDRYPFYKECIFALSVKLQNSGIKKDKRLNF
                     KALKAFKNYAKDSFYKFVLDANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNA
                     QKIAEFCIKNGYNYSDRIHIRLWNDKEGV"
     gene            complement(8939..9901)
                     /gene="moaA"
                     /locus_tag="RJ259_001046"
     CDS             complement(8939..9901)
                     /gene="moaA"
                     /locus_tag="RJ259_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HDV7366761.1"
                     /translation="MLIDQFGRKINYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLS
                     FEELFLFVKAAIDEGIEKIRITGGEPLLRKDLSIFIKMISDYKSDIDLAITTNGFLLK
                     DFAKDLKNAGLKRLNISLDTLDHKKAKTLAQKDVLDSVLSGIDEALNLDLKVKLNTVA
                     LKNLNDDELISLLEFAKSKKAQIRFIEFMENTHAYGKLQGLKRDEIIQILSQKYQIQL
                     IKKDEKAPVSIYKADDYEFGIIDPHSHEFCDSCNRIRLSAEGLLIPCLYFDEALSIKE
                     AVRKGDIKAAVEILQEVLRNKPEKNKWSVVDNETSSRAFYQTGG"
     gene            complement(9914..10429)
                     /locus_tag="RJ259_001047"
     CDS             complement(9914..10429)
                     /locus_tag="RJ259_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366762.1"
                     /translation="MSDDVLYLVFIIVLLIAMLAYMNIKERENNAKIAKLQNVIEDIT
                     KELHYFRKELGVKDDSEEDEDYKTSLLKEEIMIELDKQISSKITPVLRTLKTMEHIIE
                     DFQNEQQNRLLNLEQKAQSMAKLTPNYDTEEQKIENLFKEGKSIEQIAKDLRIGTGNV
                     ELVLKFKKLIK"
     gene            complement(10426..10923)
                     /locus_tag="RJ259_001048"
     CDS             complement(10426..10923)
                     /locus_tag="RJ259_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366763.1"
                     /translation="MELALFKAGFEAHLECCEIENNRFLGEYLKLGAISQILKWKKLA
                     LRIDFDEGEKIIFDLLLSLKEDILRLENSLDKNKELIPLKQKGVVESLNFEYLNFLDT
                     ILEEDKEYYLRFDLNNQKIAIFIKAQSQTLAKIIKIKPEDKMAFDAFVVEIQRNMIRN
                     KKGQE"
     gene            complement(10914..11798)
                     /locus_tag="RJ259_001049"
     CDS             complement(10914..11798)
                     /locus_tag="RJ259_001049"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate polyprenyltransferase"
                     /protein_id="HDV7366764.1"
                     /translation="MNTFWIKFKDILELVVFKHSIFALPFLFSSMIVASKLANDTAWF
                     GFKALILGIICAVSARNFAMATNRLMDEDIDKDNPRCANRPNVSGKIGRKSVWIFIII
                     NALIFISCSYFINTLAFYLSFPVLLVLAIYSAFKRFSSLAHLVLGFCLGLAPIAGSVI
                     IMGEIHIYSVILCLGVTFWTAGFDLLYSLQDMEYDKKIGLHSIPAKFGSKATLFISSF
                     CHILAVLFWLLFVWEVWGVALGKIALIGVIISGIILALEHKIVHKNFAHIDRAFFTLN
                     GYLSIIFFIFIWIDLLWN"
     gene            11869..12738
                     /gene="miaA"
                     /locus_tag="RJ259_001050"
     CDS             11869..12738
                     /gene="miaA"
                     /locus_tag="RJ259_001050"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HDV7366765.1"
                     /translation="MFFEIALIGTTASGKTYIANTLAREFNAVVLSLDSLCVYKEINI
                     ASAKPSQDDLASIKYFGVNLLSVNEHFNVELFIREYQKAKEFALARNLPLIIVGGTGF
                     YLKTMIDGLSEKTLESKSSLNNDEIYALLLNIDPNYKIEKNDTYRLKKWLGIYEQTRE
                     IPSEFLKRTQKTGVLKDIEIYELAWDKEILKKRIKTRTKEMLDNGLLDEAKILFSKFD
                     HKLKALNSIGLKECKEYLDGEISFKELENLITIHTTQLAKRQRTFNKKFQSKALEFDK
                     ALATLRMKFSIEK"
     gene            complement(12724..13287)
                     /locus_tag="RJ259_001051"
     CDS             complement(12724..13287)
                     /locus_tag="RJ259_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HDV7366766.1"
                     /translation="MDFYSLIFLSCALGMDAFAVSLCKGFSVKKLHLKHYLIVGIYFG
                     GFQALMPTIGYFIGITFASFIASIDHWIAFILLSLIGLKMIKESLENENCDSNANQFG
                     FKTMLALAIATSIDALAVGVSFAFLNVNLLLAIFLIGIITFILCIIALKIGNKFGIYL
                     KNKAELLGGLVLIILGVKILIEHLFFD"
BASE COUNT         4554 a         2135 c         1666 g         4982 t
ORIGIN      
        1 tattatatcg atttctccaa atttagaata gaaatttctt tttaaaattt caaagccctg
       61 tttttttaaa aatttacaag ccttatcttc acctaaaatt ccatctaaat aagcttttaa
      121 acccattatt ctatacgcat cataaaaggt ttggttttta taaaatcttg tttgcgtaaa
      181 atttcaagca aattttgtat gcttttttca taagttaaat gcgtagtaaa aaacaaagta
      241 ctgtaatttt catcattttt tttaggtttt tgtaagaaac tatcgataga aatattattt
      301 tcactcatca attgtgtgat tttagataaa acccctattt tatcttcaac tttcaccctt
      361 aaataatatt ttgtataaat ttcatctttg cttaaaagct cgtattctaa agtgttcaca
      421 aaaccaagca ttggtgcttt tacctgatct cttgctatat ccataagatc tgaaatcaca
      481 gcacttgcag tggcctctcc tcctgctcct gctccataat acaaactttc atccaacaaa
      541 tctccattaa tgcttatagc attcatcact ccatcaactt ttgcaagcat tttttcttta
      601 tctatcatag taggatgcac ccttaattct actttatttt cacgcacctt agctatacct
      661 aaaagtttta tggtaaattc aaactcatta gcaaaataca tatcttcagg tgcaatttca
      721 ctaataccct cgatcaaaat atcttcaggt ttagctttaa gattataagc gatacttgat
      781 aaaataagca gtttatgtgc tgcatcttgc ccttctatgt caaaagttgg atcagcctct
      841 gcataaccta aattttgagc tatttgcaaa gcttgtttaa aactcatatt tttttgactc
      901 atagaactta aaatataatt actcgtacca tttaaaatcc cttttatagc caaaatatta
      961 tttgcactta aaccttcttt taaaaccttg ataataggaa ttcctccagc cacacttgct
     1021 tcataaccaa aagctaaatt tttagccaaa ttttcaagtt cataacgatg ataagcaagc
     1081 atagctttat ttgcagtaac aacagctttt ttctttttta aaatttcact cactatttta
     1141 aaagcttcat ccaccccacc cattaattct acaaaaacat ctacatcagc atttaaaatt
     1201 tctgcaacgc tatgagtaat tggaattaaa gcattttttt taggacttct agcaagagcg
     1261 atcacaggag ttatgctttg cccacatctt gcacgaataa gtttatcatt ttctaaaaga
     1321 aatttaacca ccgcacttcc aacagtgcca taaccaagaa tcgctacttt cataacttac
     1381 tcttttaaat attttttgat attacgtgca gcttggcgta tgcgattttc attttcaatt
     1441 aaagcaattc ttacatactc atcacctgct tcgccaaaac ctaccccagg acttactgca
     1501 acactagcac gctgtaaaag ttgctttgaa aattctaaac tttttaaatg tcttttgctt
     1561 tcagggagtt ttgcccaaac aaacatactt gctcttggtt tttgaagttt ccagcctgca
     1621 ttttcaaaag cttcaagtaa aatgtgcatt cttttatcat aagttgcacg gatttcatct
     1681 acacaagttt gatctccatc taaagctatg gtagctgcta cttgaatagg tgtgtacata
     1741 ccataatcaa accaagattt tattttttta agcgcactga ctaagcgttt atttcctact
     1801 acaaaaccca cgcgccagcc tgccatattg taagattttg aaagagtgta agtttctacc
     1861 gctacatctt ttgcgccttc aatttccaaa atagaaggag ttttatagtc atcataagtt
     1921 aaatctgcat aagcaatatc tgaaataata taaaatcttt ctttttttgc cgttgctatc
     1981 aatctttcat aaaaactttt ctcacaagtt actgttgttg gattatgcgg gaaattaaca
     2041 acgacatatt ttggacgcgg gatgctttca tttaaagttt tatgtaaatt ttcaaaaaat
     2101 tgattttcat caagctcaaa tttttcatta taagctaaag gcatttttgc tacattacct
     2161 cctgctataa taaaagcttg agtatgtata ggataagcag gagttggcac aatagcaaca
     2221 tctccaggat ttataatcgc tcttgcaaga tttacaaaac cctcttttga acccatagta
     2281 gctacaactt cattttcagg atctaggttg acattatatt ttcttttata ccaattacaa
     2341 attgctaagc gaagtttata aatccccatg gatgtagaat atcccgaggt tttatctttg
     2401 ttagcacttt cacaaagttt atctataatg tgttgtggag ttttaccatc gggatttccc
     2461 attgaaaagt cgatgatatc ctctccagca cgtcttgctg ccatttttat cgcatttact
     2521 tctgcgaaaa cataatttgg aagtctttct atggtattaa aacggatttc atcaaacatt
     2581 tcttaatcct ttatttttta agtgtgattt ttaaacccct gcgtatatta tctaaactat
     2641 acatatcgct tacaatagca tatatagcac catttggaat aagttctgaa aaatgattat
     2701 ttttattttc gctttttact gctttaatta gattcagatt tttatctaaa aagaagattt
     2761 taggaaacca attgtctaaa tcatttgcat caataatcaa atttgtagca ttttttaaat
     2821 caagcacata gtctttaagg ggtttttcta atgattttgg agtatttaaa ttaacatttg
     2881 tattggtttt taatacagca ttggaaaaat ttaaatcata ttcatagtca tatgccccaa
     2941 tgcgcttaat attatctata tagacagaat tttcttttaa gagattgtaa agcgttccag
     3001 gatctaaaac atattgagat tctacttgta tggtatagtc aatatttcct tctcttaaaa
     3061 tcaaatctgt agggataaaa tatatatatc cggcatctgt taaaacatcg gataaaattt
     3121 taaaaaacat aacttcatca gcttttgctt taaaatttag ttttagactt tgaggatttg
     3181 atagtgttaa ggcaattaaa gaattggttt ttaatatttg agatattttt gcaatatcac
     3241 aatttccatt attatctatg taagaattat ttgagaataa taattctagt tgagaatttt
     3301 tactaggatt gtttactaaa ttttttgcta attcaagact tgagattgca aaagatatat
     3361 taacccaaag agtaagaata ataatttttt ttaccattct ttacctttat ttaattttac
     3421 aaattcagca gctgaaatac ttgtaatttt tccatcttta atcaagaaac gttttgaaat
     3481 tcctacagga aatttttgtt ctttattttc ttgatcaaac attgttaaag ctgcagcccc
     3541 tgttaaaatt aactgatctt tatctaaaga aatattaaaa tctttttctt taacaaagct
     3601 tgttttttta aggcttttta aatctatcaa acctatccaa atcttggtag aggttttaaa
     3661 atgtgcttct tttaaagaat cagtttttgg tgtatttgtg tcttcttgga tttgggtatt
     3721 tttttcttca tcgagtaggg ttgtgttatt ttcactgata ttattttcta tgcttatgtt
     3781 tttatcattt tcttgtaatg agatgttttg gcttggtaaa acgctctctg tttgatttgt
     3841 ttcttgtgct ttattgttgt ctataacaac aacattgttt ccacttaaag attttaaatt
     3901 ttcttgtgct tgtcctatga tatctataac tgttgcacta gtattatttt gttcatcttt
     3961 gaaaaaagtt ctaagtgtat caaaataata aattccactt cctataatca ctaaaacaat
     4021 aagaacaatc aaaaaaggcc aagtgttaaa ggatttttga ctataagcat ctagttttgg
     4081 ggttatcatt tttgattttg tttgtggagt aggattgttt tcgttaagat aagcttcata
     4141 ctcttcgtta aaatcactaa agtcgagttc gtattctctg ctcaaaattt taacaaaacc
     4201 tttaacatta aaacgactta aaacagcaaa attcttttct actaaagctt caagaaaatc
     4261 aagttcaatt tgcgtttttg ctgcaacttc ttttaaattt aattcttgta tttttttcca
     4321 attaagcatt taacatccta tcacaaagta ttgcaaaagc agcgctgaca ttaagactat
     4381 caaaattatt tttcatcgca atgcccacac attcatcgca tttttttata attttagagc
     4441 ttaaaccaaa accctcacta cccaaaacta aaactttttt accattgctt atttttacac
     4501 tgtgaatttc ttttcccgag ccatcgctcg cataaaaata aaaacctact tgttttagtt
     4561 cgtttattac acttaaagca tcgttgctta ttgcaatagg taaatcaaga gccgctccgc
     4621 tgcttgtgcg aattactcct tccatggcta atttttcacc aataaaaatt aaagccccaa
     4681 cccctaaagc ataagctgta cgcgtgatag cccctatatt tcctacatcg ctaattccat
     4741 aaagcataac aataaaatca ttttttttga tctcatttaa attcgcaaaa gaactttctt
     4801 taatatctag caaaaaacct tgatgatttc cacctttcgc ataagcttga gcagttttaa
     4861 aatcaagttt tttgatttta aaaccagatt ttgcgatttt ggaaaaagta attttatcac
     4921 attcttttgc taaataaagc tcattgatac agtctttatg atattctaaa atataaaaaa
     4981 atatttgctt cccataaact atcatattaa aattttacct aatcttgact taaaagcagt
     5041 ttttgataaa tttcttttgc attttttcca ttgatctttg ataataattt tgcttttgct
     5101 tttaaagaca gctctaaatc cataatatct ttttcacaaa gagtattttg caaaaaattt
     5161 tgctcttttg attgcagtac tacaacccat tcaccgttta aattagactt ttttaaaatt
     5221 tcagaaagct ctttagcatt gcctttaaat tttttttcaa attttttact gatttcttta
     5281 atcaaaaaaa tttctctttg gctgtctaga atcataatct gttctactaa agataaaata
     5341 cgcttggggg attcgtaaat aatacttgga taaggaaagt ttaaaatttt ttctatatct
     5401 ttttgtcttt ctttgccttt atttgctaaa aaaccaataa agataaattc tttttgacaa
     5461 aatgctgagc ttacaagagc aactaaggct gcatttgcac ctggtaaaat ttcataggtg
     5521 atattatttt cttgtgcaaa ttctaccaaa gccttgccag gatcactaat ccctggcatt
     5581 cctgcatcgc ttaaataagc tacatttttt tcaaatatct ttaaatcaat acttgctaaa
     5641 acttcttttt cattatggga gtgtaaggct ataaatttag aaatatgtat atcagtgtga
     5701 aatttggtat ttaataacga aatcaaagac ttacttactc ttgtatcttc gcaaaacaca
     5761 agatcgcaag tctttaaaag ttctaaggct ctaaaagaaa tatcgcttaa atttcctatg
     5821 ggagtaggaa taaaataaag cataattatt gcattgcgta ttttttctta aatttctcta
     5881 cacgacctgc agcatctaca attttttcac tgcctgtaaa aaaaggatgg caatttgaac
     5941 aaatatctac tcttaattct gctttgtttg actttgttgt aaaagtattt ccacaagcac
     6001 aacttacttt gcattctaca tattctgggt gaatttcttt tttcattagt tttccttaaa
     6061 aattaaaaca ataagccgtg attataaatt atttaacata aaaaagagat taatttaaga
     6121 aaagttaaag caaaattttt gaagctatag ctataatagc tgtttgactt tttagaatat
     6181 tagagctttt aagagagatt ttccggttaa acaataatct ctcatcattg ttaaatccac
     6241 cttcaggacc tataaaatat aattcttttt catcgaaatg actttgttgt tctccttgaa
     6301 aatcaaccat aattgcattt ggaaattttt gaacaaattc ttgagtgctt tggtggataa
     6361 ttaaatccat tttagtattt ctaccgcatt gttcacaaga agaaataatg attttttcaa
     6421 atctttctaa atcgatttta aaatttcttt gtgaaaaatt tgtaaaaacc aaatgtaact
     6481 tttttactcc aagttcattt aagaaaggta gagttttttc taaaatttta atatctataa
     6541 tggctaaggc taagtttaat tcactttgtt ttatattttg tgattttttg tttaaaaatt
     6601 ttaaagtgca agaatttctt gttaaatttg tgattgtata gttgtaaaga aaattatctt
     6661 gtaaatttct aagatttagc tccgaatttt cctttactct tcttactttt aaatggttaa
     6721 agttttcacc ttgaagttgt ataaactctt ctccagcttg cttgttatac aaaaattgca
     6781 ttttatagat atctttctat taaaaaaggc aaaaacaata aaaaaatttc aaaaggtaaa
     6841 atcaaacaac taatccatct aaaagtggca tattttctaa atcttcttgc ttttttaaaa
     6901 caaacaaagt gaaaaattgc taaggcaaaa attaagatcc aagaaaaaat cattacccag
     6961 atattgacat tcatttgaaa ttgtttcatt gctgataaca aacaacctgt aaaaataatc
     7021 aaagctaaaa ataaataata aattggtaaa aataatcgta ttctgcgaat aaaaatgaat
     7081 tcggttttaa aatttccttg tgttagtata agataaaaaa gcattaaaaa accgctcgca
     7141 taaagactat aaagatgtaa agctaaaaag aattcgtaac tttgatccat tattttcctt
     7201 tgtttataaa atcagctaaa ttttgaattt gttcatcact taaaaaacta tggtttttat
     7261 cttttatcgt ttttattttt tgtataaaaa ttttattgct caaggtttta atggccgtgc
     7321 tgtttttagg ttttaattcc cctttttctc catgacaagt ggcgcatttt tgtttatata
     7381 aagagttgat aatactagga ttgacttcat gttcatcatc taaactttgt gcttcatcat
     7441 ctacaggtaa aggcaggttg gagtcactta attctgtttt ttcatcgttt tgttctattt
     7501 ggactacttc ttgatctgta ttttgagtct tagaaatatt tttttcatca ttagaacagg
     7561 cagataaaac taataaaaaa aaacttaagg caattaaaat tttagctttt tgcattaaat
     7621 ctcctttgga tttataaaaa tttcttcatt ttttaatttg ttataaaaat ctatatcatt
     7681 ccattctgct ttaatgccat tggaaaattc tatgtcttga agtgaaattt ttggcattag
     7741 ctcactatag gcatcttctc taaaaccttg tgcatagcct gttcttgttt catgaacaat
     7801 gatgctttgt aaagtcactc cttgttctcc atttaccatt tttgtttgtt ttaataaagc
     7861 atctataagt atgaaaaata cacgacaaaa attttcagca cttacattaa caggcaggca
     7921 aatccaacga cttgaatatt ttttcatttc ttctaaatat tttgcgtcat catatttaaa
     7981 aagagtgata gcatgatcaa aactatcaat aatttggcgt atataggttt ttaaaagtcc
     8041 aaaatcatag accattccag cattatctaa atatttgctt tcaagtaaaa cttcaacttt
     8101 gtaagaatgt ccatgaatgc tacttttgca acgcttagaa gaacaaaatc taacaatgtg
     8161 tgcgttttca aattcaaata attttcttat aatcatacac cctctttatc gttccaaaga
     8221 cgaatatgaa ttctatcaga ataattataa ccattcttaa tacaaaattc agcaattttt
     8281 tgagcatttt ttttaaggtt ttgctcattt tcacccatag gcatacaaaa aatttgattt
     8341 ggagcttctt ttagaatttc attgatttct aaaaatgaat tatcaagagt attggcatct
     8401 aaaacaaatt tataaaaact atcttttgcg taatttttaa atgcttttaa agctttaaaa
     8461 tttaatcgtt tatctttttt tatcccacta ttttggagtt taacgcttaa agcaaaaata
     8521 cattctttgt aaaaaggata tctatcaaaa ttaatttcta tgcttccatt gctttcaaag
     8581 tgtatttcga atttattttt taataacatt tggataaatt ctataaattc aggattttca
     8641 taatggatta atggctctcc acctgtgata acaactatag gatcaaagtc tttttttaat
     8701 tttatcactc tttttaaaag ttcattagca tttaaagttt cataactttc tttaaaatct
     8761 tttgtgaaaa cagctcttat cgtgtcacat ccaatgagag ttttatcgtt ttttgatatt
     8821 tttacattaa aacctaaaca gttgaaattg caaccagcaa aacgcataaa aatagctaat
     8881 tttccattat atttgccttc tccttgaatg cttaagaaac tttcaacaag ttgcaaaatt
     8941 aacctccagt ttgataaaaa gcacgagatg aggtttcatt atcaacaaca ctccatttat
     9001 ttttttctgg tttatttctt aatacttctt gtaatatttc tacagcggct ttaatatcac
     9061 cttttcgaac cgcttctttt atgcttaatg cttcatcaaa ataaaggcaa ggtattaaca
     9121 agccttcagc acttaagcgt atgcgattgc aagaatcgca aaattcatgg ctatgaggat
     9181 ctataattcc aaattcataa tcatctgcct tgtaaatact cacaggtgct ttttcatctt
     9241 tttttataag ttgaatttga tatttttgac tcaaaatttg tataatttca tctcttttta
     9301 atccttgtaa tttaccataa gcatgagtat tttccataaa ttctataaag cgaatttgag
     9361 ctttttttga ttttgcaaat tccaaaagag atatcagttc atcatcgttt aaatttttaa
     9421 gagctacagt attaagtttt actttcaaat ctagatttaa agcttcatca attccagata
     9481 aaacactatc taatacatct ttttgcgcaa gagtttttgc ttttttgtga tctagggtat
     9541 caagtgaaat attaagtcgt ttaagtccag cattttttag gtctttagca aagtctttta
     9601 gtaaaaatcc atttgtagtt atagcaaggt caatatcgct tttataatcg ctaatcattt
     9661 ttataaaaat acttaaatct tttcttaata aaggttctcc gcctgttata cggatttttt
     9721 caattccttc gtctatagct gctttaacaa ataaaaaaag ttcttcgaag cttaataaat
     9781 tttcttttgg ctgataatcg aaaggaattt ttggcataca ataaaggcag cgaaagttac
     9841 atctttgtgt aactgaaatt ctaagataat ttatctttct accgaattga tctataagca
     9901 tttattttcc attctatttt attaatttct taaattttaa gacaagttct acatttccag
     9961 tgccaatgcg taaatcttta gcgatttgtt ctatgctttt tccttctttg aaaagatttt
    10021 ctattttttg ttcttctgta tcgtaatttg gcgtaagttt agccatgctt tgtgcttttt
    10081 gttctaaatt taaaagacga ttttgttgtt cattttgaaa atcttctatg atatgttcca
    10141 tagtttttag tgttcttaaa acaggagtga tttttgaact gatttgttta tcaagttcaa
    10201 tcataatttc ttcttttaaa agagaggttt tatagtcttc atcctcttcg ctatcatctt
    10261 taactcctaa ttctttacga aaataatgaa gttctttggt aatatcttct atcacatttt
    10321 gaagttttgc tatctttgca ttattttctc tttctttgat attcatatag gctagcattg
    10381 caattaaaag cacaattata aaaactaaat aaagtacatc atcactcatt cttggccttt
    10441 cttatttctt atcatatttc tttgaatttc aacaacaaaa gcatcaaaag ccattttgtc
    10501 ttcaggctta attttgataa tttttgccaa tgtttgactt tgagctttga taaaaatagc
    10561 tattttttga ttatttaaat caaatcttaa ataatattct ttatcttctt ctaaaatagt
    10621 atccaaaaaa tttagatatt caaaattcaa agattctact accccttttt gcttaagtgg
    10681 tataagttct ttatttttat ctaaagaatt ttcaagcctt aaaatatctt cttttagact
    10741 taaaagaaga tcaaaaataa ttttttcacc ctcgtcaaaa tcaatgcgta aagcaagttt
    10801 tttccatttt aaaatttgag aaattgctcc aagttttagg tattctccaa gaaaacggtt
    10861 attttctatt tcacaacatt ctaaatgagc ttcaaatcct gctttaaaaa gtgctaattc
    10921 cataataaat caatccaaat aaaaataaaa aagataatac ttaaataacc atttagagta
    10981 aaaaatgctc tatcaatatg agcaaaattc ttatgaacaa ttttatgttc caaggctaaa
    11041 ataataccgc ttataattac cccaataagt gctatttttc caagtgctac accccaaact
    11101 tcccacacaa aaagaagcca aaataatacc gctaaaatat ggcaaaaaga tgatataaat
    11161 aaagtagcct ttgaaccaaa tttagcagga atagagtgaa gtcctatttt tttatcatac
    11221 tccatatctt gtaaagaata aagcagatca aacccagctg tccaaaaagt tacacctaaa
    11281 cataaaataa cgctataaat gtgaatttca cccataatta taacacttcc tgcaataggc
    11341 gcaagtccta aacaaaatcc taaaactaaa tgtgctaaag aactaaagcg cttaaaagct
    11401 gaataaatag ccaataccaa aagcacagga aaagacaaat aaaaggccaa ggtattaata
    11461 aaataagaac atgatataaa aataagtgca ttaataatga taaaaatcca tacgcttttt
    11521 ctacctattt ttccactgac attagggcga tttgcacaac gaggattatc cttatctata
    11581 tcttcatcca ttaaacgatt tgtagccatg gcaaaatttc ttgcacttac tgcacaaata
    11641 atgcctaaaa tcaacgcctt aaaaccaaac caagcagtgt catttgcaag ttttgatgct
    11701 acaatcatag aggaaaataa aaaaggcaaa gcaaaaatag aatgcttaaa tactacaagt
    11761 tctaaaatat ctttaaattt tatccagaat gtgttcattt ttctacttta aaatattttt
    11821 tgctatgatt ttactaaaat ttttataaat tttaggataa atattaaaat gttttttgaa
    11881 atagcattaa taggaacaac cgcgagtgga aaaacataca tagccaatac tttagcaaga
    11941 gaatttaatg ctgttgtttt aagtcttgat agtctttgtg tttataaaga gattaatata
    12001 gcaagtgcca agccttcaca agatgatctt gcgagtataa aatactttgg ggtaaattta
    12061 ttgagcgtga atgaacattt taatgttgag ttattcataa gagaatatca aaaagcaaaa
    12121 gaatttgctt tagctagaaa tttacctcta attatagtag gtggaactgg attttattta
    12181 aaaactatga tagatggttt aagtgaaaaa accttagagt caaagagttc tttaaataac
    12241 gatgaaattt atgctctttt attaaatatt gatccaaact ataaaataga aaaaaatgat
    12301 acttatagat taaaaaaatg gctgggtatt tatgaacaaa caagagaaat tcctagtgaa
    12361 tttttaaaaa gaacacaaaa aactggggtg cttaaagata tagaaattta tgagcttgcg
    12421 tgggataaag aaattttaaa aaaacgtatt aaaactagaa caaaagaaat gcttgataat
    12481 ggacttttag atgaagcaaa aattcttttt tctaaatttg atcataaact taaagcatta
    12541 aattctatag gtttgaaaga gtgtaaagaa tatttagatg gagaaatttc ctttaaagag
    12601 cttgaaaatt taatcacgat acatactaca caacttgcca aaagacaaag aacttttaat
    12661 aaaaaatttc aaagtaaagc cttggaattt gataaagctt tagctacttt aagaatgaaa
    12721 ttttcaatcg aaaaataaat gttctattag aatttttact cctagtataa ttaaaaccaa
    12781 tccgcctaaa agttcagctt tatttttaag ataaattcca aatttattcc ctatttttag
    12841 agcaatgata cataaaatga aggtgataat acctattaaa aatatagcta ataataaatt
    12901 tacatttaaa aatgcaaaac tcacaccaac tgctagtgca tcgatactcg tagcaattgc
    12961 taaagctagc atggttttaa agccaaattg attggcatta ctatcgcaat tttcattttc
    13021 caatgactct ttgatcattt ttaatcctat taaagaaagt aaaataaaag ctatccaatg
    13081 atcaatactc gcaataaaag atgcaaaagt tatgcctata aaataaccaa tagttggcat
    13141 caaagcttga aatccaccaa aataaattcc aacaataaga taatgtttta aatgtagttt
    13201 tttaacacta aaacctttgc atagtgatac agcaaaagca tccattccta aagcacagga
    13261 taaaaaaata agactataaa aatccataac aaatcctaaa attttataaa aaattgaaga
    13321 tgaaattata atcaaac
//
LOCUS       DAPIWJ010000046        13069 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.046, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000046 DAPIWJ010000000
VERSION     DAPIWJ010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13069)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13069)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13069
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.046"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..1141
                     /locus_tag="RJ259_001052"
     CDS             <1..1141
                     /locus_tag="RJ259_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2318 domain-containing protein"
                     /protein_id="HDV7366767.1"
                     /translation="ILLGILSFCTALHYYFLSQDFPIFTSSLIDSEGISSLGFIALAL
                     LVCILIFFFLKWQKNFNQKTSFMLFLLLILIESDKALANILLTLMRNSIIETHAFLVS
                     FVGKSNYFGVFGIYVYLIFITFLAFLSLKIRKKNISKKQILDINYRKNEAKTSLINRY
                     FSSVFISCVVSFCIVLYFFMVSSKPLTIDEPKEILPDKNGKFIFDIALLRDNKLHRFA
                     YISAEGKVIRFFLINKREDKDSPVAVFDACMICGDMGYIKKDGQLICISCNVRIFLPS
                     VGKSGGCNPIPLKYEYDGKKITIDVKDVIAGSNYFSQIKEIEVQDPVSKTKVINTQAP
                     FSYSYKGVTYYFSNQNNYEEFKKDPTKYVEENEAQFLIQRRNDVG"
     gene            1128..2420
                     /locus_tag="RJ259_001053"
     CDS             1128..2420
                     /locus_tag="RJ259_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7366768.1"
                     /translation="MMLAKMIFNSIFKNKIQKFLAFLTCFLATLLLSTMLNITLSIGD
                     EVTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNIT
                     ALAPFLEGKITIENSQQKALIYGAYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWAKD
                     DSNEIMLGEDFAKNNKLKLGDTIKLIGENNQSKEAKIVGILLHANPKMSNKIIAPLNL
                     AQDLLNKQGLYSSTEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQ
                     ISDGLPGADAKALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRK
                     KEIGLLKVLGANTFQIYLIFASENLIVALFAALLGFIFGTALSQIISLSIFGYFIDIA
                     FVALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR"
     gene            2410..3528
                     /locus_tag="RJ259_001054"
     CDS             2410..3528
                     /locus_tag="RJ259_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HDV7366769.1"
                     /translation="MVDKFFLNELFKSISFSYQRLFIIVLSVFIGALTCSAFLNIYFD
                     IDIKLSKELKAYGANVMISPKQDENFISNTEYEKIKENLKARALTPFLYDFLNLGSTS
                     GVVLGTDFRALKITKPFLEVKEGSFSLNDFDENSAFLGVNLAKQLGLKAGNELQIYNP
                     NNGKSIKLTIKGILSSNDEFDSIVLAPLSVVQNLSDRAGINYANAVVYGNFDEVKAKT
                     QAISNKFIDAKPISSVSLSEGLVLGKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRK
                     KEIALRLALGAKKSEIFKLFASECFIVSFFASLIGAFCGIFLANVFGYLIFNSSIDFR
                     FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE"
     gene            3525..4178
                     /locus_tag="RJ259_001055"
     CDS             3525..4178
                     /locus_tag="RJ259_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7366770.1"
                     /translation="MMKKELIKINNLNKEFGKVKALNNINLSVYEGEWLAIMGPSGSG
                     KSTLLNILSLMDTPSSGEYILDNENLEQMDEEQKITLRREKIGLVFQQFHLIPYLNAL
                     ENVMLSQYYHSSVDEEDAKMVLEKVGLSHRLTHLPSQLSGGEQQRVCIARALINNPEL
                     LLADEPTGNLDEANEQIVLQTLQKLKNEGKTIVLITHNPDLAKFADRTLILQHGVLK"
     gene            4175..4663
                     /locus_tag="RJ259_001056"
     CDS             4175..4663
                     /locus_tag="RJ259_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HDV7366771.1"
                     /translation="MKKSLLILSILFLLNACSFENSKDTGKVGEKSAEISAKDTLGKA
                     VKLADDNTSLKVLVFFQNGCPSCLKELPSLDEFIQNHPNKISVYAINSIDNANVVKVL
                     AEQFDFKNVKVLKDDLKITNDRYAVFATPTTIIIKDGMIKDRILGEKPWEFFESKLIS
                     LL"
     gene            4624..5127
                     /gene="traF"
                     /locus_tag="RJ259_001057"
     CDS             4624..5127
                     /gene="traF"
                     /locus_tag="RJ259_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HDV7366772.1"
                     /translation="MGIFRIQAYFFALIIALFFVACDSGENFKALNSDKTYNFAYNGF
                     EKSLKLNDKAQNFALVFFTKDCGVCKEQIPILQNLAKNYDFNIFVVLGDANDANDAKA
                     WADEKGLSNLAMFYEKRAAKYLSSAIGEIYGVPVLSFFKEGKMDEKFIGLTPYSILEK
                     EIKKVKS"
     gene            complement(5137..5574)
                     /locus_tag="RJ259_001058"
     CDS             complement(5137..5574)
                     /locus_tag="RJ259_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HDV7366773.1"
                     /translation="MKKTILTILFLLTLTQAKEIQIYESPTCGCCDLWADYMKAKGYE
                     VSVHKTNDFLKIKEKMGIKDEYQSCHTGVIEGYAIEGHVPESAIAWLLENKPKDVIGI
                     SAPGMPQGSPGMEQGYSEKYPVILMKKDGSYELYGYFIGDKKL"
     gene            complement(5873..6289)
                     /locus_tag="RJ259_001059"
     CDS             complement(5873..6289)
                     /locus_tag="RJ259_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366774.1"
                     /translation="MKKLGLVLAVLVALNVSAFADLIVINKKDLVPVSASEMQNKYFQ
                     ESIKSTLTEPLFKKATFYEADIVAKVDPRTYNSTQAIIQKEYSDKSNYVYYKQVLILT
                     SDGKRARLSTLSCEIASFDKKGYLCGGTADHNYSIK"
     gene            complement(6464..6548)
                     /locus_tag="RJ259_001060"
     tRNA            complement(6464..6548)
                     /locus_tag="RJ259_001060"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6512..6514),aa:Leu,seq:tag)
     gene            complement(6553..6629)
                     /locus_tag="RJ259_001061"
     tRNA            complement(6553..6629)
                     /locus_tag="RJ259_001061"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6593..6595),aa:Arg,seq:tct)
     gene            complement(6644..6720)
                     /locus_tag="RJ259_001062"
     tRNA            complement(6644..6720)
                     /locus_tag="RJ259_001062"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6684..6686),aa:Arg,seq:tcg)
     gene            complement(6724..6800)
                     /locus_tag="RJ259_001063"
     tRNA            complement(6724..6800)
                     /locus_tag="RJ259_001063"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6764..6766),aa:His,seq:gtg)
     gene            complement(6825..6902)
                     /locus_tag="RJ259_001064"
     tRNA            complement(6825..6902)
                     /locus_tag="RJ259_001064"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6865..6867),aa:Pro,seq:tgg)
     gene            complement(6945..7793)
                     /locus_tag="RJ259_001065"
     CDS             complement(6945..7793)
                     /locus_tag="RJ259_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HDV7366775.1"
                     /translation="MRFVFLICCACLVFANEILLLSKFDKQDFNSKDFNAYLMSEKLD
                     GVRGIWDGKYLKTRQNYKIKTPDFFTKNFPPFAIDGELWIARNKFDEISALIRSGDSN
                     LTLWKEVTYNIFDVPNACEEFQISTCTLKNRLAVLEEYLQKYPSAYIKIISQIPVENQ
                     NNLNQFYESIIKNQGEGIVIRKNLSPYEKGRSKNATKLKPYDDAECELVGFRKGKGKF
                     ENQVGALLCKMPNGQIIKIGSGLKDEDRKNPPKIGSIVTYKFNGLTKNSLPRFPVFLR
                     IRDENP"
     gene            complement(7793..8455)
                     /gene="cgpA"
                     /locus_tag="RJ259_001066"
     CDS             complement(7793..8455)
                     /gene="cgpA"
                     /locus_tag="RJ259_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein CgpA"
                     /protein_id="HDV7366776.1"
                     /translation="MKTRILAIFFIFTSLLYADENPFKTDQNITLVAPPEFQKEEVKF
                     NSSARILKSITFNYINLDGSEDKIDLDVNKSIDWHDTYTISRFKSPDPSKVLDVSVTI
                     PEKNSSKQESNSTANVEIPLQVAKIYDFISYAVYKNKIKLNTSDEMITDFSVGNPSKI
                     VIDFRSKMISPTKNIRLSNSIFKRIDFGSHKGYYRLVIYLDGTYNYNIQKDATGYMIN
                     LL"
     gene            complement(8445..8648)
                     /locus_tag="RJ259_001067"
     CDS             complement(8445..8648)
                     /locus_tag="RJ259_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366777.1"
                     /translation="MIFWAFLVVIGAIYFGNMFFGQYSLDTLLSLENTKEELNKKIIL
                     LKEQNAKAQKDYFELKGLYPNEN"
     gene            complement(8714..9958)
                     /gene="eno"
                     /locus_tag="RJ259_001068"
     CDS             complement(8714..9958)
                     /gene="eno"
                     /locus_tag="RJ259_001068"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HDV7366778.1"
                     /translation="MLVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTG
                     SKEALELRDNDERFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNY
                     SNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIINGGAHANNNVD
                     FQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPI
                     DLLMTCIKKAGYENRVKIALDVASTEFFKDGKYHMEGKAFSSEALIERYVELCAKYPI
                     CSIEDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN
                     QIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQIKTGALARGER
                     TAKYNRLLEIEFESDEYLGEKL"
     gene            complement(9958..10989)
                     /gene="recA"
                     /locus_tag="RJ259_001069"
     CDS             complement(9958..10989)
                     /gene="recA"
                     /locus_tag="RJ259_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HDV7366779.1"
                     /translation="MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSV
                     GLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKY
                     AKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
                     QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFY
                     ASVRLDVRKVATLKQNEEPIGNRVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELID
                     YGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMIS
                     GSEDDEGEE"
     gene            11095..11955
                     /locus_tag="RJ259_001070"
     CDS             11095..11955
                     /locus_tag="RJ259_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis family protein"
                     /protein_id="HDV7366780.1"
                     /translation="MKKITIAHSPDADDIFMYMAIKFGWIGNDFAYENTALDIQTLNE
                     FALKNEFDATAISFGLYPLIASEYALLRTAVSFGEGYGPKLIKKKDTHLKRNFKVALS
                     GANTTNALIFRMKYPEARIIYKNFLDIENAVLSGEVDAGVLIHESILNFDQSLYVEAE
                     LWDIWLEFAKENLPLPLGGMALRRSLPLSDAIKIERDLTNAVKIADANRKILAPMLME
                     RKLIRVDEEKLDTYLNLYANKNSISMNQTQLLAVDTLFKLGYDYKFYDKIIHVNDFLI
                     PSEYEEARNS"
     gene            11967..12236
                     /gene="fliQ"
                     /locus_tag="RJ259_001071"
     CDS             11967..12236
                     /gene="fliQ"
                     /locus_tag="RJ259_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HDV7366781.1"
                     /translation="MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLVISIFQATTQI
                     NEMTLSFVPKIILVVVILIFLMPWMTTTMIDFTENILNQIPTFIK"
     gene            12233..13009
                     /locus_tag="RJ259_001072"
     CDS             12233..13009
                     /locus_tag="RJ259_001072"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HDV7366782.1"
                     /translation="MIIDFKKYSSVRIGNEFEVLVLDQICDFDGFLIGGANNLLVSPK
                     PKNIGILGDGFNFIQILDRNKDFIHLRIGCKTKSSKMYRFAKENNLKGFEYLSKIPGT
                     LGGLLKMNAGLKGECISQNLIKIATSQGEILRANINFDYRFCPLNTHFFWAEFKLNFG
                     FDTLKDEALKNARSNQPSGASFGSIFKNPKNDFAGRLIEAVGLKGFSKGDAMLSDKHA
                     NFLINKKNASFEDAFFLIELARKKVFEEFGTNLENEVIII"
BASE COUNT         4359 a         2189 c         2018 g         4503 t
ORIGIN      
        1 tattttattg ggaattttaa gtttttgcac cgctttgcat tattattttt taagtcaaga
       61 tttccctatt tttactagct ctttaatcga tagcgaaggt ataagttctt taggttttat
      121 tgctttagcc ttgcttgttt gtattttgat tttcttcttt ttaaaatggc aaaaaaattt
      181 taatcaaaaa acaagcttta tgctgttttt actgcttatc cttatagaaa gcgataaagc
      241 tctagccaat atcttgctta ctttaatgcg aaattccatc atagaaactc atgctttttt
      301 ggtgagtttt gtaggaaaaa gtaattattt tggtgttttt ggaatttatg tttatttaat
      361 tttcatcact tttttagcat tcttaagctt aaaaattcgc aaaaaaaata taagcaaaaa
      421 acaaatttta gatataaatt atcgcaaaaa cgaagctaaa acaagtctta ttaatcgcta
      481 tttttccagt gtttttatct cctgtgttgt aagtttttgc attgttttat acttttttat
      541 ggtaagctct aagcctttaa ccatagatga gcctaaagaa attttacccg ataagaatgg
      601 caaatttatc tttgatatag ctcttttaag ggacaacaaa ctccaccgct ttgcttatat
      661 cagtgctgaa ggcaaagtga taaggttttt tcttatcaac aaaagagaag ataaggattc
      721 tcctgtagct gtttttgatg cttgtatgat ttgtggagat atgggctata tcaaaaaaga
      781 tggacaactc atttgcattt cttgcaatgt gcgtattttc ttgccaagtg taggtaaaag
      841 cgggggttgc aatcctatcc cactcaaata cgaatacgat ggtaaaaaaa tcaccataga
      901 tgttaaagat gtaatagcag gatctaatta ttttagtcaa atcaaagaaa ttgaagtgca
      961 agatcctgta tcaaaaacaa aggttataaa cacccaagct cctttttctt atagctataa
     1021 aggggttact tattattttt caaatcaaaa caactatgaa gaatttaaaa aagatcctac
     1081 aaaatatgta gaagaaaacg aagcccaatt tttaatccaa aggagaaatg atgttggcta
     1141 aaatgatttt taactctata tttaaaaaca aaattcaaaa atttttagcc tttcttactt
     1201 gttttttagc cacgcttttg ctctctacta tgctaaatat taccctaagt ataggtgatg
     1261 aagtaactaa acaactcaaa agctatggct ctaatatcct tgttttaccc aaaggctcaa
     1321 gccttagtat agaaataggt aatgaacttt atgaaccctt aaaaaacaaa aactacctag
     1381 aagaaaaaaa tttatatatg attaaagaca tttattggcg taacaacatc accgcacttg
     1441 ctcctttttt ggaaggtaaa atcacaattg aaaactccca gcaaaaagca cttatttatg
     1501 gtgcttattt tcaaaaagcc ataaaaatta aagatgatga tgattttatc acaggtataa
     1561 aaagtcttta tccttattta gcagtgcaag gagaatgggc aaaagatgat agcaatgaaa
     1621 tcatgctagg cgaagacttt gctaaaaaca ataaactaaa attaggagat actatcaaac
     1681 tcataggaga aaacaatcaa agcaaagaag caaaaatcgt aggcatttta cttcatgcca
     1741 atcctaaaat gtcaaataaa atcatcgctc ctttaaattt agctcaagat ttactcaaca
     1801 aacaagggct ttactcaagt acagaagtaa gagcttttac catacctgaa tcagcccttt
     1861 ctgaaaaagt acgtcgcatg ggcgaagaaa aattagatca gttagaatat gacaaatggt
     1921 attgctcagc ttatgtaggc tcaatcgcta gtcaaattag cgatggcttg ccaggtgctg
     1981 atgcaaaagc tctaaatgct ataagcgatg ctcaaagctt ggtggttaaa aagatccaat
     2041 ccttaatggg cattacttgc attatttgtc ttattgttgc aagtattgcg atttcaagtc
     2101 taatgagttc tgaaattcat cgtagaaaaa aagaaatagg acttttaaaa gtacttggtg
     2161 ctaatacttt tcaaatttat ctcatctttg ctagtgaaaa tttaatcgta gctttatttg
     2221 ctgctttact tggatttatt tttggcacag cactttctca aatcatcagt cttagtattt
     2281 ttggatattt tattgatata gcctttgtag ctttaccttt aagctttatt tttgcaggac
     2341 ttattgcctt acttggttgc ttgcttccta tcaaaaatat cacacaactt tcagctgcag
     2401 gagtgcttta tggtagataa gtttttcctc aatgagcttt ttaaaagcat tagcttttct
     2461 tatcaaagac tttttattat agttttaagt gtttttatag gagcacttac ttgctcagct
     2521 tttttaaata tttattttga tatcgacatc aaactttcta aagaattaaa agcttatgga
     2581 gcaaatgtaa tgataagtcc caagcaggat gaaaatttta tctccaatac tgagtatgaa
     2641 aaaataaaag aaaatttaaa ggctagagct ttaactcctt ttttgtatga ttttttaaat
     2701 ttaggcagta caagcggggt ggttttaggc actgatttta gggctttaaa aatcactaaa
     2761 ccttttttag aagttaaaga aggaagcttt tctctaaatg attttgatga aaattcagcc
     2821 tttttaggag ttaatttagc caagcaacta ggcctaaaag caggcaatga acttcaaatt
     2881 tataatccaa acaacggaaa aagcataaaa cttaccataa aaggcatact ttcaagcaat
     2941 gatgaatttg atagcattgt tttagcccct ttaagcgtgg tgcaaaattt aagcgataga
     3001 gccggtatta actatgctaa tgctgtagtt tatggaaatt ttgatgaagt taaagccaaa
     3061 acacaagcaa tcagcaataa attcatcgat gcaaaaccta tatcttcagt atccttaagt
     3121 gaaggtttag tgcttggaaa aatcaaagct ttaatgtttt taatcatact tgtggtattg
     3181 atcatagtta ctactagcgt taatacaact ttaagttcta ttatattttc tcgcaaaaaa
     3241 gaaatcgcac tgcgtttagc cttgggtgcg aaaaaaagtg aaatttttaa actttttgct
     3301 agtgaatgct ttatagtaag tttttttgct agtttaatcg gagctttttg tgggatattt
     3361 ttagccaatg tctttggtta tttaattttt aattctagta ttgattttag atttatagct
     3421 gtttttatag ccttaatcat ttctttgatt tttgcctttt tggctgcatt ttttcctata
     3481 aaaagagcat taaaaatcaa tgtgtgtgaa aatttgaaag gtgaatgatg aaaaaagaac
     3541 ttattaaaat aaacaattta aataaagaat ttggcaaagt taaagcctta aacaatatca
     3601 acttaagcgt ctatgaagga gaatggcttg ccatcatggg tccatcagga agtggaaaat
     3661 caacactttt aaacatacta tcgctcatgg atactccaag ctctggagag tatatcttgg
     3721 ataatgaaaa cctagagcaa atggatgaag agcaaaaaat caccttgcgt cgtgaaaaaa
     3781 tagggcttgt ctttcaacaa tttcatctta tcccctatct taacgcctta gaaaatgtta
     3841 tgctctctca gtattatcac tcaagtgtag atgaagaaga tgccaaaatg gttcttgaaa
     3901 aagtaggact ttcgcataga ctcactcatt tacctagcca attaagtggc ggagaacaac
     3961 aaagagtttg tatagcaaga gctttaatca acaacccaga gcttttactc gcagatgaac
     4021 ccacaggaaa tttagatgaa gccaatgaac aaatcgttct tcaaaccttg caaaaattaa
     4081 aaaatgaagg taaaaccata gttttaatca cacacaatcc tgatttagcc aaattcgcag
     4141 atcgaaccct tatcttacaa catggggtgt taaaatgaaa aaaagccttt taatcttaag
     4201 cattttgttt ttactcaatg cttgttcttt tgaaaattca aaagatactg gaaaagttgg
     4261 agaaaaaagc gctgaaattt cagctaaaga tactttagga aaagctgtaa aacttgctga
     4321 tgataataca agtttaaaag tcttagtctt ttttcaaaat ggctgccctt cttgcttaaa
     4381 agaactccct tctttagatg aattcataca aaatcacccc aataaaatca gtgtttatgc
     4441 tataaattcc atcgataatg ccaatgtggt taaggtttta gccgaacaat ttgactttaa
     4501 aaatgtaaaa gttttaaaag acgatcttaa aatcaccaat gatcgttacg ctgtgtttgc
     4561 aacccctact accatcatca ttaaagatgg gatgataaaa gatagaattt taggagaaaa
     4621 accatgggaa tttttcgaat ccaagcttat ttctttgctt taatcatagc tttatttttt
     4681 gtagcttgtg atagtggaga aaattttaaa gctttaaata gcgataaaac ctataatttt
     4741 gcctacaatg gttttgaaaa aagcctaaaa ctaaatgata aagcacaaaa ttttgcctta
     4801 gtatttttca caaaagattg cggagtttgc aaagaacaaa ttcctatttt acagaatttg
     4861 gctaaaaatt atgattttaa tatctttgtg gttttaggcg atgcaaacga tgcaaacgat
     4921 gcaaaagctt gggctgatga aaaaggttta tctaatttag caatgtttta tgaaaaaaga
     4981 gcagctaaat acctttcaag tgccattggg gaaatatatg gagtacctgt gcttagtttt
     5041 ttcaaagaag gaaaaatgga tgaaaaattc ataggcttaa ctccttatag catacttgaa
     5101 aaagaaatca aaaaagtaaa aagctaaaaa tttactttaa agctttttat cccctataaa
     5161 atatccataa agctcatagc ttccatcttt tttcatcaaa attacaggat atttttcact
     5221 ataaccttgt tccattcctg gacttccttg cggcatgcca ggagctgaaa ttcctataac
     5281 atctttaggt ttgttttcaa gcaaccatgc tatagcactt tcaggaacat gcccttcaat
     5341 agcatagcct tcaatcacac ctgtatggca actttgatac tcatctttta tacccatttt
     5401 ttctttgatt ttaagaaaat cattggtttt atgaacacta acctcataac ccttagcttt
     5461 catataatca gcccaaagat cacaacagcc acaagtagga ctttcataaa tttgtatttc
     5521 cttagcctgc gtaagagtga gtaaaaaaag aatggttaaa attgtttttt tcataattgc
     5581 tatcctaagt aaaaaatata taataatact tttataaagt taatatcatc acatttttaa
     5641 cactaaaaat gaatttacaa aaatttaatc aagaaaagac ttttaatgag tgttgatttt
     5701 gtctttgcag caaagatata aaagataaaa cgatttaaaa aactagaaat ttttaactta
     5761 aaaagcttaa aatttagata tattttatac ttactatgtt ttttcatagt atgttctaat
     5821 ggtggatttc cgccaagagt gaaaactcaa ggcggatttt tatttgcaat atttacttaa
     5881 tagaataatt atgatcagct gtgcctccac ataaataccc cttcttatca aaacttgcaa
     5941 tttcgcaaga aagagtagat aatctagctc ttttaccatc actagttaat ataagaactt
     6001 gtttataata aacataattg cttttatctg aatattcttt ttgtattata gcttgagttg
     6061 aattataagt tcttggatca acttttgcaa caatatctgc ttcataaaaa gttgcctttt
     6121 taaaaagtgg ctcagttaaa gttgatttta tactctcttg gaaatatttg ttttgcattt
     6181 cgcttgctga aactggaact aaatcttttt tattgataac tatcaaatct gcaaatgctg
     6241 acacatttaa agcaactaaa actgctaaaa ctaaacctaa ttttttcatt ttatctcctt
     6301 gaattgaatt ttgtatattt gaattatttt tcaaatcttt tgcaagataa tttttaaatt
     6361 tatctaaatt aaatttgcat tttatctaac aatcataaga aattttaaaa tgaaataaaa
     6421 atttatgaga aatcaactct tatttgaaaa tgataaaagt aagtggtgcg gatgaaagga
     6481 cttgaacctt cacgcattgc tgcaccagat cctaagtctg gcgtgtctgc caatttcacc
     6541 acatccgcaa agtggtacgc ccaagaggat tcgaacctct gacctacggc ttagaaggcc
     6601 gttgctctat ccagctgagc tatgaacgca tataaaatct tggtggtgcg cccgatagga
     6661 atcgaaccca taacctacag atccgaagtc tgtcgctcta tccagttgag ctacgagcgc
     6721 tagtggggtg agtgatggga attgaaccca cgaccctcag gaccacaatc tgatgctcta
     6781 accgactgag ctacactcac cattttgtat aaatttataa aaaatggtcg gggtgaaagg
     6841 attcgaacct tcggcccctt ggtcccaaac caagtgcgct aaccagactg cgctacaccc
     6901 cgaataaata aaaggaaata ttttatcaca aaataatttt aaagtcaagg attttcatct
     6961 cttattctta aaaacaccgg aaagcgaggt aaggaatttt tggtcaatcc attaaattta
     7021 taagtcacaa tactaccaat ttttggagga ttttttctat cttcatcttt taaaccactg
     7081 cctattttaa tgatttgtcc attaggcatt ttacaaagta aggcacctac ttgattttca
     7141 aatttaccct tgcccttgcg aaatcctacc aactcacatt ctgcatcatc atagggtttt
     7201 aatttcgtgg catttttact tctgcctttt tcataaggac ttaaattttt gcgtataaca
     7261 ataccttcac cttgattttt tataatgctt tcgtaaaatt gatttaaatt attttgattt
     7321 tcaactggaa tttgagaaat aatttttata taggcactag gatatttttg caaatactct
     7381 tctaaaacag ccaaacgatt tttaagagtg caagtagaaa tttgaaattc ttcgcaagca
     7441 tttggtacat caaaaatatt ataagttact tccttccata aggtcaaatt gctatcgcca
     7501 ctacgaatta aagctgaaat ttcatcaaat ttatttcttg ctatccaaag ctcaccatca
     7561 atagcaaaag gagggaaatt ttttgtaaaa aagtcaggag tttttatttt gtagttttgg
     7621 cgagttttta gatatttccc atcccaaatt ccacgcactc catcaagttt ttcgctcatc
     7681 aaataagcat taaaatcttt agagttaaaa tcttgcttat cgaatttgct aagaagtaaa
     7741 atttcattag caaaaactaa acaagcacaa catattaaaa aaacaaacct catcaaagca
     7801 gattaatcat atatccagtt gcatcttttt gaatattata attataagtt ccatcaagat
     7861 atattacaag tcgataatat cctttatgag atccaaagtc tatgcgttta aaaatagaat
     7921 tgctaaggcg tatgtttttt gtagggctaa tcattttaga tctaaaatct ataacgattt
     7981 tacttggatt tcctactgaa aaatctgtaa tcatttcatc actagtgtta agttttattt
     8041 tatttttata aaccgcataa gaaataaaat cataaatctt tgcaacctgt aaaggtattt
     8101 caacattggc tgttgagttt gattcttgtt tagagctatt tttttcaggt atagtaactg
     8161 aaacatcaag tacttttgaa ggatcagggc ttttaaatct tgatatagta taagtatcgt
     8221 gccaatcaat acttttattg acatctaaat cgatcttatc ttcacttccg tctaaattga
     8281 tataattaaa agtgatgctt tttaaaattc ttgcactaga attaaattta acttcctctt
     8341 tttgaaattc aggtggagca accaaggtta tattttgatc tgtcttgaaa ggattttcat
     8401 cagcatataa aagagaggta aaaataaaaa atattgccaa aattctagtt ttcatttggg
     8461 tataatcctt ttaattcaaa ataatctttt tgtgctttag cattttgttc tttgagcaaa
     8521 ataatctttt tattaagctc ttctttggta ttttctaagc ttaataaagt atctaaagaa
     8581 tactgcccaa aaaacatatt gccaaaataa atcgctccaa ttacaacaag aaaagcccaa
     8641 aaaatcattt ttataacatg ggtataaaaa cttttttttc ttgtgctttc gtcgtattct
     8701 ttaagtaaat cgctcagagc ttttctccta aatattcatc gctttcaaat tcaatttcaa
     8761 gtaagcgatt gtattttgcg gttctttcgc ctcttgctag ggctcctgtt ttaatttgtc
     8821 ctgtatttaa agccacagca aaatccgcta taaaagcatc ttcactttcg ccgcttctat
     8881 gactcatcac acatttatag ttatttcttt gcgctaaacg cacagttctc atagtttggg
     8941 taatagttcc gatttgattt ggtttgataa gtacagcatt tgccattttt ttgatgatac
     9001 cttctcttaa aatatcttca ttggtcacaa acaaatcatc gcctacaagc tgaattttat
     9061 tgcctaattt ttcagtcagc ttgatccagc cttcaaagtc attttcagct aagccatctt
     9121 cgatactgca aattggatat tttgcacaaa gttctacata gcgttcgatc aaagcctcgc
     9181 ttgaaaaagc cttgccttcc atgtggtatt taccatcttt gaaaaattct gtacttgcca
     9241 catcaagagc aatttttaca cgattttcat aacctgcttt tttgatacaa gtcattaaaa
     9301 gatcgatagg ttctgtgttg ttagctaaat ttggagcaaa accgccttca tcacctaaag
     9361 ccgtagaatg tccagaattt gcgagttctt tttttaatat cgcataaatt tcacaaactg
     9421 aacgcaaagc ttctttaaag ctagtaaaac caaaaggcat gatcataaat tcttgaaaat
     9481 ctacattgtt gtttgcatga gcaccgccat ttatgatatt acacattggc acgggtaaaa
     9541 tgctcgcatt tgcaccacct aagtagcgat ataaaggcat tcccaaagca gctgcagccg
     9601 cacgagctgt tgccatagat acgcctaaag tcgcatttgc acctaaattt gagtaattat
     9661 ttgttccatc gagctcacgc aaagtatcat caagttgagt ttgattaaaa gcatctagtc
     9721 ctaaaatttc atctgcaatg gtctcattga catttgcaac agcttttaaa acgccttttc
     9781 cgccaaatct ttcatcatta tcacgcaatt ctaaggcttc ttttgaacct gtacttgcac
     9841 cacttggaac tatggccgca cctacacttc catcgcttag cgtaacttcg gcttttacgg
     9901 ttggatttcc tctactatca agaacttcat aggctctaac atcttcaatt actaacatta
     9961 ttcttctcct tcgtcatctt cgctaccgct gatcatacct tctattccca tagaattttg
    10021 aattgctttt gtgatttcat ctgcaatttc agggttttct tttaagaaag cttttgaatt
    10081 ttctctacct tgtccaagtt ttttatcttt ataagaaaac cacgcaccac ttttatctac
    10141 gatatcaagt tttacaccat aatcgatcaa ttcaccttca cggcttaaac cctctccaaa
    10201 catcacatca aattcagctt gtctgaatgg aggagcaact ttatttttaa ctacttttac
    10261 tttaacgcgg tttcctatag gttcttcgtt ttgttttaag gttgctactt ttctaacatc
    10321 taaacgcaca gaagcataaa attttaatgc atttccacct gttgtggttt caggagtacc
    10381 ataacccata gcaccgattt tcatacgaat ttggttgata aaaattactg tggtattcat
    10441 tttatgaact atacctgtaa gttttcttag agcttgagac ataagtcttg cttgaagtcc
    10501 tacatgttga tcgcccatat cgccttcaat ttctgctttt ggagtaagtg ctgcaacgct
    10561 atctactacg ataagatcta ctgcgccact tcttgctata gtttctacaa tttctaaggc
    10621 ttgttctcca aaatcaggct gagaaacata caaatcatct gtatttacac ccaaattttt
    10681 agcatatttt acatcaagcg catgttctgc atcgataaaa gcacaaactc cacctgcttt
    10741 ttggcattct gcgataatat gtaaagttag agtggtttta cctgaacttt caggtccata
    10801 aatttctata attcttcctt ttggaacacc gcctatacct aaagcaagat caagcccaac
    10861 tgaacctgtg cctatgctat cgatttgctc gacttcttta tcccctagtc ttaaaatagt
    10921 gccttttcca aaggttttat ctaaactttt tagggcagcg tctagagatt ttcttttatt
    10981 atcatccata actttcctta aaaattctaa atttttagtt agaattctaa caaaataaaa
    11041 ttaaataatg atttattttg ctagaattaa agcaaagatt taaaggaagc atagatgaaa
    11101 aaaattacta ttgcacattc tcctgatgct gatgatattt ttatgtatat ggcaattaaa
    11161 tttgggtgga tagggaatga ttttgcttat gaaaatacag ctttagatat acaaacttta
    11221 aatgaatttg ccttgaaaaa tgaatttgat gctacggcta tttcttttgg gctttatcct
    11281 ttaatcgctt ctgagtatgc acttttacgc acagcagtga gttttggtga aggttatggg
    11341 ccaaaactca tcaagaaaaa agacacgcat ttaaaaagaa attttaaagt cgctttgagt
    11401 ggagcaaata ccaccaatgc tttgattttt cgcatgaaat atcctgaagc aagaattatt
    11461 tataagaatt ttttagacat tgaaaatgcg gttttaagtg gcgaagtaga tgcgggggtt
    11521 ttgatccatg aaagcatttt aaattttgat caaagtcttt acgtggaagc agaactttgg
    11581 gatatatggc ttgaatttgc taaagaaaat ttgcctttgc ctttaggtgg aatggctttg
    11641 cgtcgttctt tacctttaag cgacgcgatt aagatcgaaa gagatttaac caatgctgta
    11701 aaaattgccg atgcaaatcg taaaatttta gcccctatgc ttatggaaag aaaacttatc
    11761 cgtgttgatg aagaaaaact tgatacttat cttaatttat atgccaataa aaactctatt
    11821 agcatgaatc aaactcaact tttagctgta gatacgcttt ttaaactagg atatgattat
    11881 aaattttatg ataaaatcat acatgtaaat gattttctta tccctagcga atacgaagaa
    11941 gctagaaatt cttaaaaagg ataaaaatgg atgaaagtac cttagttgct cttggagtgc
    12001 aaacctttaa aatcacactt ttactttcct tgcctatgct tttagcagga cttattgcag
    12061 ggcttgtgat cagtattttt caagcaacta cacagattaa cgaaatgaca ctttcttttg
    12121 ttcctaaaat catcttggtt gtagttattt taatcttttt aatgccttgg atgactacaa
    12181 ctatgattga ttttactgag aatatactaa atcaaattcc aacttttatc aaatgatcat
    12241 tgattttaaa aaatactctt ctgtgcgtat aggaaatgaa tttgaagttt tagttttgga
    12301 tcaaatttgt gattttgatg gttttttaat aggtggtgca aacaaccttt tagttagtcc
    12361 aaaacctaaa aatataggaa ttttaggaga tggttttaat tttatacaaa ttttagatcg
    12421 gaataaagat tttatacatc ttcgcatagg ctgcaaaaca aaatcaagta aaatgtatcg
    12481 ctttgccaaa gaaaacaatc ttaagggttt tgagtattta agcaaaattc ctggtacact
    12541 tggcgggctt ttgaaaatga atgcaggact taaaggagag tgtatcagtc aaaatttaat
    12601 caaaattgct acttctcaag gcgaaattct aagagcaaat ataaattttg attatcgttt
    12661 ttgtccttta aatacgcatt ttttttgggc tgaatttaaa ctaaactttg gctttgatac
    12721 ccttaaagat gaagctttaa aaaatgcaag aagcaaccaa cctagtggag caagctttgg
    12781 ctctatcttt aaaaatccga aaaacgactt tgcaggacgt ttaatcgaag ctgtaggact
    12841 taaaggattt agcaagggag atgctatgtt aagcgataaa cacgcaaatt ttttaattaa
    12901 taaaaaaaat gcaagttttg aagatgcgtt ttttcttatc gaattggcta gaaaaaaagt
    12961 ctttgaagaa tttggcacaa acttagaaaa tgaagtgatt ataatctaaa cacacaaaac
    13021 aataaaagtc taaaaaattt actcttaatc taactttaaa taaaataca
//
LOCUS       DAPIWJ010000047        12751 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.047, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000047 DAPIWJ010000000
VERSION     DAPIWJ010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12751
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.047"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            127..912
                     /locus_tag="RJ259_001073"
     CDS             127..912
                     /locus_tag="RJ259_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDV7366783.1"
                     /translation="MEITDLPYLIIGIISGIASGLFGIGGGMIIVPSMFALGASAHHA
                     IGISVLQMIFAAVFGSYINYKKKNLNLKDGIMIGFGGLIGASFSGMLLKALSDVALTS
                     VFLAVSCIFFIKYAFGIKENIVQNQRSVWVKNVILFIAGAFTGIFAISLGIGGGLLIA
                     PILAYFLGYDSKKVVSLSLFFVIFASVSGIISFSNSGVIDSEVIHKGILVGIASMVGV
                     FIGIKIIEKMHISAHRKILLCVYALSILGTTHSLLNKLNFINF"
     gene            985..3810
                     /gene="uvrA"
                     /locus_tag="RJ259_001074"
     CDS             985..3810
                     /gene="uvrA"
                     /locus_tag="RJ259_001074"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HDV7366784.1"
                     /translation="MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFG
                     TLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTI
                     TEIYDYLRLLYARVGIQHCHRCGQKISSMSVSDIVSEILKFPKGAKIIIYSPLIREKK
                     GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRL
                     ASDIEKGLQESFGEIEIEVLNHEEINLNKHYHFSEHSACFDCKISFVPLEPLSFSFNS
                     PKGACEACDGLGIRYTLDMKKIIDENLSLENGAVKIMYGFNKSYYYKFLIAFCEQNEI
                     PIKIPFMQLNEVQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEY
                     MSEKICKDCGGHRLKPESLAVKVAKKSLGEILDMSIEDSTAFFADEKNFSYLSEQQKL
                     ISKPILKEINERLFFLYDVGLGYLSLGRDARTISGGEAQRIRIASQIGSGLSGVMYVL
                     DEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKAGKFGGE
                     VVFSGTYKELLKSKSETALYMNGKKQISQLQNRTQKEWLELKNVNINNIQDLSVKFPL
                     QNLVAITGVSGSGKSSLILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQ
                     SPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKAGRFSFNVKGGRCEKCSGDGE
                     IKIEMHFLPDVMVVCDTCGGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKI
                     KQKLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLH
                     FEDVNKLILVLQHLVDLKNSVFVIEHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVE
                     KVAKEHKKTRSYTGYYLDLELKNTQKS"
     gene            3815..4258
                     /locus_tag="RJ259_001075"
     CDS             3815..4258
                     /locus_tag="RJ259_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDV7366785.1"
                     /translation="MFDFLYNDISYLGLFMVCFLSSTLLPLASEAFVLGFIKLDFNPN
                     LVLIVATLGNTLGSLSTYALAYFGKEKILEKYFSKSLKKLENFNANFAKFGSIFAFFT
                     FLPLVGDLFALGLGFAKYSFLKTIFFILLGKLSRYTFIIFIANSF"
     gene            complement(4214..5221)
                     /locus_tag="RJ259_001076"
     CDS             complement(4214..5221)
                     /locus_tag="RJ259_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HDV7366786.1"
                     /translation="MRLILDTDIGNAIAGANTDDGLALALILSSKEIKLEMLSTVCGN
                     VPSLVAYSVAKDLFQRLNLNIPVYLGANEALKEPSKAWRQRLDESVKNFKLEYLWENI
                     KSPEILENINPDAIFKMGELVSKNPKEISICAIGPLTNIAMTMKIFKDFDINLKELFI
                     MGGSFDMPYYTKDTNFGFDPEAASIVLNSRAKITLIPYNATMQTLLTHEDLKELQGKN
                     ILCDFIVETLGVWIDYASKTRGTKGTWIHDALTIACALDSSIADFDECYADVICDSSL
                     ARGMSWRCFREPKMSMGVDLSTKNCVKILKNVDNARLLKLIKERLLKGVCYENYESIT
                     T"
     gene            complement(5218..6579)
                     /locus_tag="RJ259_001077"
     CDS             complement(5218..6579)
                     /locus_tag="RJ259_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HDV7366787.1"
                     /translation="MTNQQIDGIADKNFNTPEGRKVFKKAVFSCWLGTAMEYADFALY
                     GLAAATIFSEVFFPEQTPVIALLLSFVTYGIGFIARPIGALFFGHLGDKHGRKNVMMA
                     TIALMGISTTLIGFIPSYAVIGVWAPICLVALRFMQGFGAGAELSGGTVMLGEYAPSK
                     RRGLVSSVIALGSNSGTLLASFVWLLMVQMDEASFKEWGWRVPFMGSILIALFAVYIR
                     FHVKETPVFEKQKNEMMKLRLNNEKHMKKDERSFWQRSRAFWTMVGLRIGENGPSYLA
                     QGFIVGYVTKILLLDKSVATTAVMIASLVGFLVIPLAGYLSDKFGRCITYRMFCLLLM
                     IYAFPAFMLLDSKNEIIVILTIIVGMSLASLGIFGVQAAWGVELFGVKNRYTKMAFAK
                     ELGSILSGGTAPMVASALLAYYGSWWPIATYFVLTAGIGFVTTFFAPETRGRDLNKIE
                     DAI"
     gene            6743..9382
                     /gene="polA"
                     /locus_tag="RJ259_001078"
     CDS             6743..9382
                     /gene="polA"
                     /locus_tag="RJ259_001078"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HDV7366788.1"
                     /translation="MKTLTIVDTFGFFFRLYYALKGFKNSQGQASGMISGFANFIYSL
                     KNEYKSDYIVFALDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISV
                     SQEGYEADDIIASFVKTCENRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAA
                     CLEKYGVKPNQIRDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVR
                     NERSRNLLLEGKENAFLSKKLASLYDNLEVQNLIEKATYPDEEPLLKILEILEHYELN
                     TLLKKLRQNPDNKDKNLGFKATLVQDENKLFEILNTLDKESIIAFDTETTGLDTKEAK
                     IVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAIEVIFNHFVIGHNLKYDFKII
                     QNNFDLNLPQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFESLVKKGENFASV
                     ELEKACKYAAEDAYITLRFYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDT
                     NALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQMGDILFEKLKLPSGKKGKTGYS
                     TDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTA
                     TGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEKL
                     LNAFANDEDIHARTAIMIFGESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEANLAK
                     SYIEKYFENFTSIKKYFEKVKNEAKQNGFIVTLSGRKRYFDFENAKPMQIAMYERESI
                     NSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIME
                     NIVKLKVKLKTSSSIAKNWGDLK"
     gene            9398..10174
                     /gene="motA"
                     /locus_tag="RJ259_001079"
     CDS             9398..10174
                     /gene="motA"
                     /locus_tag="RJ259_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HDV7366789.1"
                     /translation="MDLSTILGMVLAVTSISVGDILEGGNPLHVVHLSSFLIVMPTAA
                     FCAMTSTHKKIVKAAYKELKVVFKGSGVNLPERIAQLIEFAIIARRDGLLALESRTSE
                     IENEFLKNAMMMLVDGKSFEEIHESMEIQTEQLEEHYKECAEYWIVFGETCPTMGLVG
                     AVFGLILALKLLDNPQAMAAGISGAFTATVTGIFGAYALFAPWGKKLKANGMDLVKEQ
                     IVITEAIKGIAEGANPRDLEAKLFNFLSHDDPRISQFDKG"
     gene            10177..10920
                     /gene="motB"
                     /locus_tag="RJ259_001080"
     CDS             10177..10920
                     /gene="motB"
                     /locus_tag="RJ259_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HDV7366790.1"
                     /translation="MAKKHKCPECPAGEKWAVPYADFLSLLLALFIALWAISKTNPAK
                     VEALKTEFVKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRL
                     QAALDQSDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGY
                     TDNSDSIIRSYELAYQRAENVLKYFIEGGANLKNISIKSYGLNNPINGNPQTLENNRV
                     EIYFKVDTADTSTQKSVLELINKIGTKAP"
     gene            complement(10926..12014)
                     /gene="flhB"
                     /locus_tag="RJ259_001081"
     CDS             complement(10926..12014)
                     /gene="flhB"
                     /locus_tag="RJ259_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HDV7366791.1"
                     /translation="MAGEDQEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTI
                     TLFMLSFMGERIVNLYRYYQSFIGVEFDLRIIQAIMIKSIFEVLIILAPIVLSIMIAG
                     VLGNIMQFGFIFTTKPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFI
                     VLLKFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGL
                     RMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIR
                     YDTSKEQAPRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREM
                     FKAVAEVLGFVYNTNNKSRLAGQVKKGN"
     gene            complement(12131..12727)
                     /locus_tag="RJ259_001082"
     CDS             complement(12131..12727)
                     /locus_tag="RJ259_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HDV7366792.1"
                     /translation="MIVTKKALDFTAPAVLGNNEIVQDFNLYKNIGPKGAVVFFYPKD
                     FTFVCPSEIIAFDKRYQEFKNRGIEVIGISGDNEFSHFAWKNTPVNQGGIGQVKFPLV
                     ADLTKQIARNFDVLYAEAVALRGSFLLDADRTVRHAVVNDLPLGRNIDEMLRMVDTML
                     FTNEHGEVCPAGWNKGDEGMKANPKGVAEYLGKNEAKL"
BASE COUNT         4617 a         2104 c         2004 g         4026 t
ORIGIN      
        1 acatttttac gatgcttaaa gttaccaaaa aatattctat tgttataaaa aaactaagat
       61 aatacttagc ttaataagat aaaattattc cgtatttgaa atatttaata ttttttagga
      121 aaagctatgg aaatcacaga tttaccttat ctaatcatag gaatcatttc aggtattgct
      181 tctggacttt ttggcattgg tggaggtatg attatcgttc cttctatgtt cgcacttgga
      241 gcaagtgctc accatgctat cggaatttca gtattgcaaa tgatttttgc agcagttttt
      301 ggctcttata ttaattataa gaaaaaaaat ctaaatctta aagatggtat tatgataggt
      361 tttggagggc tcataggagc aagctttagc ggaatgcttt taaaagcttt aagtgatgta
      421 gctcttacta gcgtattttt ggcggtaagt tgtatatttt ttatcaaata tgcttttgga
      481 attaaagaaa acattgtgca aaatcaaaga agcgtttggg taaagaatgt cattttattt
      541 attgctggag cttttactgg tatttttgct atttctttgg gaattggtgg cggactttta
      601 attgctccga ttttagctta ttttttaggc tatgatagta aaaaagttgt ttccttatcc
      661 ttgttttttg ttatttttgc ttcagtctct ggtattatat ctttttcaaa ttctggagtt
      721 atagactctg aagttattca taaaggaata ctagtaggta tagcttctat ggttggagtt
      781 tttataggaa ttaaaatcat agaaaaaatg catatttcag ctcatagaaa aattttactt
      841 tgcgtatatg ccttatcaat acttggaacc acccactctt tgcttaataa gctaaatttt
      901 ataaattttt aacttggatt tatccaagtt cttttaatat tattatgcta aaatcttaaa
      961 tttatttaat gtttaggaaa gactatgaac gataccataa aaatcattgg cgcaagagaa
     1021 aataacctaa aaaatatcca ccttgaaatt cccaaaaaca aactcattgt ttttacagga
     1081 ctgagcggaa gtggaaaatc aacccttgct tttggaactc tttatgctga aggacaacgc
     1141 cgttatatag aaagtttaag tgcttacgcc agacaatttt tagataaggt aggcaaacct
     1201 gatgtcgata aaatcgaagg tttaactcca gccattgcca tagatcaaaa aactacttct
     1261 aaaaatccac gctctactgt aggaaccatc actgaaattt atgattatct aagactttta
     1321 tacgcaagag ttggcattca acattgtcat cgatgtggac aaaaaatttc atctatgagt
     1381 gtaagtgata tagtcagtga aattttaaaa tttccaaaag gtgcaaaaat catcatctac
     1441 tccccactca tacgagaaaa aaaaggaact tatgcagatt tgcttgaaaa tttacgcaac
     1501 aaaggctatg taagagctca aattgatgga gttttggtaa gacttgatga agaaattgaa
     1561 ctagccaaaa ccaaaaaaca caccattaaa cttgtcatag atagacttga aattcaagaa
     1621 gatttacttt ctcgtcttgc aagcgatata gaaaaaggtt tacaggaaag ctttggagaa
     1681 atagaaatag aagttttaaa tcatgaggaa ataaacctta ataaacacta tcattttagc
     1741 gagcattcag cttgttttga ttgtaaaatt tcctttgttc cacttgagcc tttaagcttt
     1801 tcttttaatt ctccaaaagg agcatgtgaa gcttgcgatg gacttggaat tcgttatact
     1861 ttagatatga aaaaaatcat cgatgaaaat ttaagtctcg aaaacggtgc tgttaaaatc
     1921 atgtatggtt ttaataaaag ttattattat aaattcctaa tcgccttttg cgaacaaaat
     1981 gaaattccta tcaaaatacc ttttatgcaa ttaaacgaag tacaaaaacg tcttgtattg
     2041 tatggtaatg ccaaaactat agaatttctt tggaaaagaa atcgcctaaa acgcactttt
     2101 gaaggcgtgg ttaaaatggc ttatgaaatg ctaaaagatg aaaaagattt agccgaatat
     2161 atgagtgaaa aaatttgtaa agactgcggt gggcatcgtt taaaacctga aagtttagcc
     2221 gtgaaagtag caaaaaaaag cttgggtgaa attttagata tgagcataga agatagtacg
     2281 gccttttttg cagatgagaa aaatttttct tatttaagcg agcaacaaaa acttatttct
     2341 aaacctatcc taaaagaaat caacgaaaga ttgtttttct tgtatgatgt ggggctaggt
     2401 tatctttctt tagggcgcga tgcaagaacg attagtgggg gtgaagcaca aagaatccgc
     2461 atagcttcac aaattggcag tggtttaagc ggagtgatgt atgtcttaga tgagcctagc
     2521 ataggacttc atgaaagaga tactgcaaaa ctgattaaaa ctttaagaaa tttacaacaa
     2581 aagggcaata ccctaattgt cgtagagcat gataaaatga ccatagaaga agcagatttt
     2641 attgtagata ttggtccaaa agcaggaaaa tttgggggtg aggttgtatt tagtggaact
     2701 tataaagaac ttttaaaaag caaaagcgaa actgcacttt atatgaatgg taaaaaacaa
     2761 atttcacaac ttcaaaacag aacacagaaa gaatggcttg agcttaaaaa tgtaaatatt
     2821 aacaatatcc aagatttaag cgtaaaattt cctttgcaaa atttagtcgc tataacagga
     2881 gtttcaggtt ctggaaaaag ctctttgata cttcaaaccc tacttccttt tgcacaagag
     2941 gaattaaacc gtgcgaaaaa agttaaaaaa cttggcggag tacaaataga aggacttgaa
     3001 aaacttgata aagtcattta tcttgatcaa agcccaattg ggcgcacacc acgttcaaat
     3061 cctgccacct atacaggtgc tatggatgaa atcagaaatc tttttgccgc cactaaagaa
     3121 gccaaaatgc gtggttataa agccggacgc ttttctttta atgtcaaggg tggaagatgt
     3181 gagaaatgta gcggagatgg agaaatcaaa atagaaatgc attttttacc tgatgttatg
     3241 gtagtttgtg atacttgcgg gggcaaacgc tacaatgatg ccacgctaga aatcaaatat
     3301 aaaggcaaaa atatcagtga aattttaaat atgagtgttt tagaagcgag tgaatttttt
     3361 acagccgttc ctaaaatcaa acaaaaatta gatactctag taaaagtggg tttagattat
     3421 ctaactctag gacaaaatgc caccacctta agtggaggtg aagcacaaag aatcaaactt
     3481 gctaaagaac taagccgtag cgatacagga aaaacgcttt atatacttga tgaacctaca
     3541 acaggactgc attttgaaga tgtcaataaa ctcatcttag ttttacaaca tttggttgat
     3601 cttaaaaatt ctgtttttgt gatagaacat aatttagatg tgattaaaaa tgctgattat
     3661 atcatcgata tggggcctga aggcggagtt aaaggtggaa aagttataag cacaggaagc
     3721 gtggaaaaag tcgctaaaga acacaaaaaa acccgttctt acacaggata ttatctagac
     3781 ttagagctta aaaatacaca aaaatcataa ttttatgttt gattttttat ataatgatat
     3841 tagctatttg gggcttttca tggtgtgttt tctttcaagc acactattac ccttagcaag
     3901 tgaagccttt gttttaggct ttataaaact tgattttaat ccgaatttgg tacttatcgt
     3961 agccactttg ggtaatacct taggaagttt aagtacttat gctttagcgt attttggaaa
     4021 agaaaaaatt ttagaaaaat actttagcaa atccttgaaa aaattagaaa atttcaatgc
     4081 taattttgct aaatttggaa gtatatttgc tttttttact tttttacctt tagtgggaga
     4141 tctttttgcc ttgggacttg gttttgcgaa atattctttt ttaaaaacta tattttttat
     4201 cttacttgga aaattaagtc gttatacttt cataattttc atagcaaact ccttttaaaa
     4261 gcctctcttt tataagtttt aaaagccttg cattatctac attttttaaa attttaacac
     4321 aatttttagt gcttaaatcc acccccatac tcatttttgg ttctctaaaa caacgccaac
     4381 tcatacctct tgccaaagaa ctatcgcaaa taacatcagc ataacactca tcaaaatctg
     4441 caatactaga atctaatgcg caagctatcg ttaaagcatc atgtatccaa gttccctttg
     4501 taccacgtgt tttagaggca taatcaatcc aaacacctaa agtttcaacg ataaaatcac
     4561 ataaaatatt cttaccttgc aactctttta aatcctcgtg tgttaataaa gtctgcatgg
     4621 ttgcattata aggtatgagt gtaattttag ctcttgaatt tagcactata ctagccgcct
     4681 caggatcaaa accaaaattt gtatctttag tgtaataagg catatcaaaa ctgccgccca
     4741 taataaaaag ctctttaaga tttatatcaa aatctttaaa aattttcata gtcatagcga
     4801 tatttgtcaa aggtcctatc gcacaaatag aaatttcttt aggattttta ctcaccaact
     4861 cacccatttt aaaaatcgca tcaggattta tattttctaa aatttcagga ctttttatat
     4921 tttcccaaag atattcaagt ttaaaatttt taacactttc atcaagtctt tgacgccaag
     4981 ctttacttgg ttcttttagg gcttcattcg ctcccaaata aacggggata tttaaattta
     5041 aacgttgaaa taaatcctta gccacactat aggcaacaag gcttggaaca ttaccgcaaa
     5101 ctgtgcttag catttcaagt ttgatttctt tagatgacaa aatcaaagca agtgctaaac
     5161 catcatcagt atttgctcct gcaatagcat tgcctatgtc cgtgtctaag ataagtctca
     5221 tatcgcatct tctattttat ttaaatctct acctctagtt tctggcgcaa aaaatgtagt
     5281 cacaaaacct atacctgcag ttaatacaaa atatgtcgcg ataggccacc aagagccata
     5341 atatgcaagc aaagcagaag ccaccatagg cgctgttcct cctgaaagaa tagaacctag
     5401 ctccttagca aaagccattt ttgtataacg gttttttacc ccaaaaagct ccacacccca
     5461 agctgcttgc acaccaaaaa tccctaaaga tgctaaagac atacctacaa taatagttaa
     5521 aatcacaata atttcatttt tactatctaa aagcataaaa gcaggaaaag cataaatcat
     5581 taaaagcaaa caaaacattc tataagtaat acatcttcca aatttatcac ttaaataacc
     5641 cgccaaagga ataactaaaa accctaccaa tgaagctatc attaccgctg tagtagctac
     5701 tgatttgtct aaaagtaaaa ttttagtcac ataacctaca ataaaacctt gcgcaagata
     5761 agaaggtcca ttttcgccta ttcttaagcc caccatagtc caaaaagcac gacttctttg
     5821 ccaaaaactt ctttcatctt ttttcatatg cttttcgtta ttaagacgca atttcatcat
     5881 ttcatttttt tgcttttcaa aaacaggggt ttctttgaca tgaaaacgaa tatatacagc
     5941 aaaaagagcg attaaaatac ttcccataaa aggaactctc cagccccatt ctttaaaact
     6001 tgcttcatcc atttgtacca tcaaaagcca tacaaaagac gcaagcaaag ttccactatt
     6061 tgatcctaaa gcaatcacag aagaaacaag ccctcttctc ttgctaggag catattctcc
     6121 tagcataact gttccacctg aaagttcagc tcctgcgcca aaaccctgca taaaacgtaa
     6181 tgcaaccaaa caaataggcg cccaaacacc aatcactgca taacttggga taaaacctat
     6241 cagagtagtt gaaattccca ttaaagctat tgtagccatc ataacatttt ttcttccgtg
     6301 tttatcacct aaatgaccaa aaaacaaagc cccaataggt cttgcaataa aacctatgcc
     6361 ataagttaca aaactaagca aaagtgcaat tactggagtt tgctcaggaa aaaatacttc
     6421 tgaaaaaatt gttgcagctg ctaaaccata aagtgcaaaa tctgcatatt ccatagcagt
     6481 tcccaaccag caagaaaaaa ctgccttttt aaaaactttt ctaccttcag gtgtgttaaa
     6541 attcttatct gcaattccat caatttgctg atttgtcatt acattttcct tacattattc
     6601 atataaaatt tttactctac tcgatattat gactaaaaat tgaagtattt tcgcttaaat
     6661 atctttaaat ttcgagacat tttaagcaaa attttgaaat aatataacca aaaaatatat
     6721 tttatcaaaa gaagaaatta ttatgaaaac tttaactatt gttgatactt ttggattttt
     6781 tttcagactt tactacgcat taaaaggttt taaaaattca caaggacaag ctagtggaat
     6841 gattagcggt tttgcaaatt ttatttatag cttaaaaaat gaatataaaa gtgattatat
     6901 tgtttttgca ttagattcca aaggaaaaac ttttcgtagc gaaattgatc caaactataa
     6961 acaaaatcgc actccaccgc cacctgaact tctagaacaa attccaattt gcataaagat
     7021 gatagaaaaa atgggtttca taagcgtttc tcaagaaggt tatgaagctg atgatatcat
     7081 tgcttctttt gtaaaaactt gtgaaaatag agatattttt gtacgtatta tcactcaaga
     7141 taaagatctt tatcaactca taaaagatgg taaaacaagc atttacagtc ctatttctaa
     7201 aaacgactat gatgaagcag cgtgtttaga aaaatacgga gtaaaaccta atcaaatcag
     7261 agatttttta gctctttgtg gggatagttc tgataatatt ccaggcgtta aaggtatagg
     7321 tgcaaaagga gctaaaacct tgcttgatga gtttggtagc atagagggaa tttatgaaaa
     7381 tttaacccta gtacgtaacg aaagaagtcg taacttgctt ttagagggta aggaaaatgc
     7441 atttttaagc aaaaaattag cttctttgta tgacaattta gaagtacaaa atctcataga
     7501 aaaagccact tatcctgatg aagaacctct tttaaaaata cttgaaattt tagaacatta
     7561 cgaacttaat actttgctta aaaaactgcg tcaaaatcct gataataaag ataaaaattt
     7621 aggttttaaa gccactttag tacaagatga aaacaaactt tttgaaattt taaataccct
     7681 tgataaagaa agtattattg cttttgatac cgaaaccaca ggacttgata ctaaagaagc
     7741 aaaaattgtt ggttttagtt tttgcatgaa tgaaaatgaa gccttttacg tgcctttaac
     7801 tcataattat cttggagtag gtgagcaaat ctcattgcaa agtgccaaaa aagctataga
     7861 agtaatcttt aatcattttg ttatagggca caatctcaaa tatgatttta aaatcattca
     7921 aaacaatttt gacttaaatt tacctcaaaa atacgcagat acaatgattt tggcatggct
     7981 taaaaatcct tctttaagag taaatatgga tgatttagcc ttaagacttt ttaattacga
     8041 aaccttgcat tttgaaagcc ttgttaaaaa aggagaaaat tttgcaagtg tagaacttga
     8101 aaaagcttgt aaatacgctg cagaagatgc ttatatcact ttaagatttt atctttattt
     8161 tttaaaaaat cttgaaactc ctttattaga acttgctaaa aactgcgaat ttgatttcat
     8221 taaaatcatt atgatgatgg aagaaaatgg cataaagctt gatacaaatg cacttgaaat
     8281 ccttatgaaa aaatttgaaa atgaaatcaa aaatttaagt gaagaaattt atactctttg
     8341 cgaggataga tttaatctaa attcacctaa acaaatgggt gatatacttt ttgaaaaact
     8401 caaactccca agcggaaaaa aaggaaaaac aggatattct accgatgaaa aagttttaaa
     8461 tatactttta gataaacatc ctgtaattgc taaaatttta gattatagag aacttgccaa
     8521 actttattcc acttattgcg aacctttgtt aaaactagcg ttaaaagata aaaattcacg
     8581 catttattca agttttttac aaactggaac cgctacagga cgtctttcat ctaaggatcc
     8641 aaatttgcaa aacatccctg cacacggaca atatgcaaaa gattataaat cttgctttgt
     8701 agctaaagat ggatttagtt ttatctctct tgattattct caaatcgaac ttagaatact
     8761 tgcacatttt agcgaagatg aaaaactttt aaatgctttt gccaatgatg aagatataca
     8821 cgcaagaaca gcaataatga tttttggtga aagcaattat gaaaccagaa gtgttgcaaa
     8881 aagtataaat tttggactta tttatggtat gggttataaa accttaagtc aaaatttaaa
     8941 aatagaagct aatttagcca aatcttacat agaaaaatat tttgaaaatt ttactagcat
     9001 taagaaatat tttgaaaaag ttaaaaacga agctaaacaa aatggtttta ttgttacttt
     9061 aagcggtcgc aagcgttatt ttgattttga aaacgcaaaa cctatgcaaa ttgccatgta
     9121 tgaaagagaa agcattaatt caatcttgca aggctcagca gcagatgtaa tcaagcttgc
     9181 aatgctagaa atcaataaag aattaaatga agataaaaag cttattttac aaattcatga
     9241 tgaattaatt tttgaagtaa aagacgattt gtgtgaaaat tttgtaaaaa aaactagaga
     9301 tattatggaa aatatagtaa aattaaaagt aaaattaaaa acaagttcaa gtatcgccaa
     9361 aaattggggc gatttaaaat aatcaaggag ataattaatg gatctttcaa ccatattagg
     9421 aatggtgctt gcagttacta gtatttcggt aggagatata ctagagggag gcaatccttt
     9481 gcatgttgtg catctttctt cctttctcat agttatgcca acagctgcat tttgcgcaat
     9541 gacttctacg cataaaaaaa ttgtaaaagc agcctacaaa gaactcaaag ttgtttttaa
     9601 aggttctgga gtaaatttac ccgaaaggat agcccagtta atagaatttg ctattattgc
     9661 aagacgagat ggtcttttag cgttagaatc aagaaccagt gagattgaaa atgaattttt
     9721 aaaaaatgct atgatgatgc ttgtagatgg taaaagcttt gaagaaattc acgaaagcat
     9781 ggaaatacaa accgaacaac ttgaagagca ttataaagaa tgcgcagaat attggatagt
     9841 atttggagaa acttgcccta ccatggggct tgttggagcg gtttttggtc ttattctagc
     9901 tcttaaattg ctagacaatc ctcaagcaat ggcagcgggt atttcaggtg ctttcacagc
     9961 tacagttacg ggaatttttg gcgcttatgc actttttgct ccttggggga aaaaattaaa
    10021 agctaatgga atggatcttg taaaagagca aattgttatt actgaagcta taaaaggaat
    10081 tgcagaaggt gctaatccta gagatttaga agctaaactt tttaacttct taagtcacga
    10141 tgatccaaga atttcacaat ttgacaaagg ttaaaaatgg ctaaaaaaca taaatgccca
    10201 gaatgtccag caggtgaaaa atgggctgtg ccttatgcag actttctaag tttgcttttg
    10261 gcacttttta ttgctctttg ggcaatttct aaaacaaacc ctgctaaagt agaggcttta
    10321 aaaactgaat ttgttaaaat ctttgattac acctctactc aaacagtcaa agaagagagt
    10381 aaaacccaag aaaaatataa aggcgcagca aaagaagaaa gcgatgaact caaatcgtta
    10441 aaacaaatga ctatgacaca gcaagaaact atcaaacgtc ttcaagcagc tctagatcaa
    10501 agcgataatc aggttgctct taaccttcca tctaaagttg aatttgaaag aggtagtgct
    10561 caaatcgttt cagctgatat acaagattat ttaaaacgta tggctgagct aacaacatat
    10621 ttgccacctc aagcaaaaat agaaattaga ggctatacag acaatagcga ctctattata
    10681 agaagttatg aactcgccta ccaaagagcg gaaaatgtat taaaatattt tatagaaggt
    10741 ggagcaaatt tgaaaaatat tagcattaaa agctacgggc ttaataatcc tatcaatgga
    10801 aatccacaaa ctctagaaaa taatagagta gaaatatatt ttaaagtcga tacagcagat
    10861 acaagtactc aaaaatcggt tcttgagctt attaacaaaa taggaactaa agcaccttaa
    10921 aagttttagt ttcctttttt tacttgacca gctaaacgac tcttattatt tgtattataa
    10981 acaaatccta gtacctcagc tacagcttta aacatttccc taggaatgag atcattaaca
    11041 tcgcaagctt tataaagctc ccttgctaaa ggaggatttt cataaactac aacattattt
    11101 tcataggcta cttgttttat acgaagtgcg agaaaatcca ctcctttagc aacaactcta
    11161 ggagcttgtt ctttacttgt atcataacga atagctacgg cataatgagt tggatttgta
    11221 atcactacat ccgcacctgc aacatcttga accatgcggc gacgcgcagc ttccatttga
    11281 agtctacgaa ttctaccttt aacctgagga tctccttcca tttgtttata ttcatctttt
    11341 atttcttgtt tgctcatacg caaaccttta aaatactgaa aacgcaccaa aaaaacatct
    11401 aaaacagcaa taattaaaaa agcaactata acaatagctg ctaaaacaat agccctatct
    11461 cttagccaag taagctgtgc aaccatagta taaagctcaa ctcttggaag ctcttgcata
    11521 aatttaagca aaactataaa agctatagta aaaacaatac ccacttttaa aataattttt
    11581 atactttcaa caattttttt caatgaaaaa aggtttttta aacctttcaa aggattgatt
    11641 tttcctaaat ttggcataat aggtttggtt gtaaaaataa aaccaaattg cataatattt
    11701 cccaaaaccc cagcaatcat aatacttaaa acaataggtg caagaataat taaaacctca
    11761 aaaatgcttt taatcataat ggcttgaata atacgcaaat caaattcaac accaataaaa
    11821 ctttgatagt atctatataa atttacaatt ctctcgccca taaaactcaa cataaataaa
    11881 gttatagtta ctccaattat caaagttaca atagctgccg catcttgaga ctttggaaca
    11941 ttaccttctt tacgcgcatc ttctatcttt ttggacgtgg gttcttctgt tttttcttga
    12001 tcttcgcctg ccatatttta gcctaagtaa aaattttaat atatgcaaaa ttataataga
    12061 aaaattatga atttcaatta aagaataaaa ataaagaaaa agcctcgtaa agaggcttta
    12121 tactaagaaa ttaaagttta gcttcgtttt tgccaagata ttcagctaca cctttagggt
    12181 tagctttcat accttcatca cccttattcc atcctgcagg acaaacttca ccatgctcat
    12241 ttgtaaaaag catagtatca accattctta acatttcatc tatgtttcta cctagtggca
    12301 aatcattaac cacagcatgg cgaactgttc tatcagcatc aagcaagaac gaaccacgaa
    12361 gggcaactgc ttctgcataa agtacatcaa aatttctagc aatctgctta gttaaatcag
    12421 caacaagtgg gaatttaacc tgaccaatac caccttgatt taccggagta tttttccaag
    12481 caaaatgtga aaattcatta tctcctgaaa ttccaattac ttcaataccg cggtttttaa
    12541 attcttgata tcttttgtca aaagctataa tttctgaagg acaaacaaaa gtaaaatctt
    12601 ttggataaaa gaatactacc gctccttttg gacctatgtt tttataaaga ttaaaatctt
    12661 gaacaatttc attgtttcct aataccgctg gagcagtaaa atctaaagct tttttagtaa
    12721 ctatcatatt ttctcctaaa taataaattt t
//
LOCUS       DAPIWJ010000048        12599 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.048, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000048 DAPIWJ010000000
VERSION     DAPIWJ010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12599
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.048"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            1..1696
                     /gene="kdpA"
                     /locus_tag="RJ259_001083"
                     /pseudo
     CDS             1..1696
                     /gene="kdpA"
                     /locus_tag="RJ259_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305525.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit A"
     gene            1706..3767
                     /gene="kdpB"
                     /locus_tag="RJ259_001084"
                     /pseudo
     CDS             1706..3767
                     /gene="kdpB"
                     /locus_tag="RJ259_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344096.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
     gene            3769..4377
                     /gene="kdpC"
                     /locus_tag="RJ259_001085"
     CDS             3769..4377
                     /gene="kdpC"
                     /locus_tag="RJ259_001085"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
                     /protein_id="HDV7366793.1"
                     /translation="MLRTLLSFFVVMLILCTLIYPFALNTVAKFIFPYQSSGSLVGKE
                     GRPTLDISKAVGSKLLGQDFNKPYFLHSRASVSNYNTSDTNESSVSSGGFNYAMSNPA
                     LKERVQKDLQKFLDENPQITKEQIPLDLLSASGSGFDPHISLQAALVQIPRISQSSKI
                     IKEELEKIIQENTESKFLGIFGEEKVNVVAVNIAITKAMKKE"
     gene            4380..6314
                     /locus_tag="RJ259_001086"
                     /pseudo
     CDS             4380..6314
                     /locus_tag="RJ259_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856839.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
     gene            complement(6309..8282)
                     /gene="uvrB"
                     /locus_tag="RJ259_001087"
     CDS             complement(6309..8282)
                     /gene="uvrB"
                     /locus_tag="RJ259_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HDV7366794.1"
                     /translation="MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTF
                     TMANVIKELNIPTLIMSHNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRT
                     DVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
                     GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDEL
                     DAMYHYNVLENKKGKDLKRFILYPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENK
                     LVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKKGDTPYTLFDYFAIKDRKFL
                     VIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFV
                     SATPAPLELELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVL
                     VTVLTKKLAEELTRYYLELGIKVKYMHSDIDAIERNEIIRGLRSGAFDMLIGINLLRE
                     GLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKSMQEAMD
                     TTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKL
                     VKELRKQMLEAAKALEFEKAAAIRDEINKLRDL"
     gene            8436..8666
                     /locus_tag="RJ259_001088"
     CDS             8436..8666
                     /locus_tag="RJ259_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366795.1"
                     /translation="MFDEKIINTMTDKVNELIEKYNEVCEANEALRNELVSVKAQNEA
                     KSNQIMRLEEELKSRNIESEDIYKKIEAVLGR"
     gene            8656..8898
                     /locus_tag="RJ259_001089"
     CDS             8656..8898
                     /locus_tag="RJ259_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366796.1"
                     /translation="MADNLKQVIVNVNAKDFIVKCSEEFANFLEDDIALISGGTKKIE
                     LKRFVDAFVKKSYENYILERELKKLIKAINEELPTK"
     gene            8895..9332
                     /locus_tag="RJ259_001090"
     CDS             8895..9332
                     /locus_tag="RJ259_001090"
                     /inference="COORDINATES: protein motif:HMM:NF019575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HDV7366797.1"
                     /translation="MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDY
                     EMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEKLFYCLNDCDYSLLDTPIYSDFK
                     SWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI"
     gene            9314..11167
                     /locus_tag="RJ259_001091"
     CDS             9314..11167
                     /locus_tag="RJ259_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HDV7366798.1"
                     /translation="MQRSDIRYYELAICGLYLDNLTFHSFDEIKPLTQVLVDLKSKKN
                     LKAIVLKECQKPDFKTIEIKEITKYFLTPLQLELANFIVYYYASKLGFVLGFFETSPK
                     YECQKMFFKDTPKLSNQQQNALSFLQKENNSLLFADTGSGKTEIYISLIKECLEQGKQ
                     ALLLMPEIALTPQMQKRLEVYFKDNFFLWHSKISKKKKQEYLECFCKGEVLLVAGARS
                     ALFLPFRNLGLIVVDEEHDNSYKASNQPFINARDLALFLGQKNNIKVVLGSATPSLTS
                     FYKQKSFRLKGTFFESKKHFLYDENELGITPMLLSELEKSLKHQKQAIVFLPTRANFR
                     QIICKDCGETIKCPFCSIAMSMHKKKNILKCHYCNYTSLIEQNCPSCKGEMLEARKIG
                     TAELLELLQNALPLAKIAKFDSDEITSVKKLNTILKNFNENKIDILIGTSMLAKGHDY
                     HSVDLSVILGLDEYLLRPSFRASEETLALAMQVAGRAGRKGEARVLLQTKNRAFFERY
                     IENYDAFLKDELENRKDLYPPFKRLLRVLIEDKDQKSAQKLCEKFASQFRNIKQVELV
                     GYGICGVEMLYGKYRFYLLLRSENHKALVAIENYILQFKNASADIDPIDFV"
     gene            complement(11177..12571)
                     /locus_tag="RJ259_001092"
     CDS             complement(11177..12571)
                     /locus_tag="RJ259_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HDV7366799.1"
                     /translation="MQNLLLYIKNNLTPTLAQILLQALKNSNNEKFFTFVLKNIETIC
                     TWLNSNEFRDRYLSTKHPYPPLINPNFIEIDSSRHCAELAWDLNLPLPKHYKFIYISP
                     HGVGAAAFLRYLNQCCDVTCFASWVLPPDSKERYCINYMCLNDNTIAQYAINISEINL
                     PYFDKYLSLLDFNSKIICGVRDPIGLLKHSWGRDWSKVLRNYPPEFNLTYDWRYYINY
                     LTHQNHKIKIDINELQQGVFIISYLLKYFNKDNVYYLDMEEIRQSKAFDTMNLLAINF
                     NFTPPHKDKLDLFKIKEFRGYIRYLFPITLYANSKDINNTFYLNTPKNNKNFNIDRTS
                     SIPIILDRKHINHEKIDIIQEIIKNDLCNDMGVYIDKNDFKQLEQNNLLFSTIKHYLY
                     DFLYQIKITIDETESKMMKEKDVIDYFIKNKSLIYTFFNIFENELNHLKQTHPHIIDS
                     WKYYKEFEKIYKDK"
BASE COUNT         4283 a         1629 c         2185 g         4502 t
ORIGIN      
        1 ctagaaattt taataacact gattatagct tttatattgg ctttaatttt tggaaattat
       61 ctttataaaa ttgcaagctg taaaaaaact atttttgatt ttatttttaa tccaattgat
      121 aacttaattt ataaaatttg tgcaattgat agaaaaaata tgacttggca aaaattattc
      181 tttgcattta attgctttta atgccttagt ggctattttt tctttcgtga ttttttattt
      241 acaagataaa ctttttttta aatcctaatt cgataaattc tatgaaaggg gatttgaatt
      301 taaatactgt aattagtttt attacaaata caaaccttca gcattgtagt ggagagagtg
      361 ctttaagttt gctttcgcaa aatacaggca ttttacttgc tatgtttgtt tcaagtgcga
      421 gtggatattc tgcttgtatg gctttttgtc gtgctttatg tagtatgcaa atgggaaatt
      481 tttatgaaga ttttacgcgt attattacgc atttgatgtt gcctttaagt tttattttgg
      541 ctgtaatttt tatctctgaa ggcgtggtgt aaaattatca cgcaaatttt agcgtgctta
      601 ctttagaaaa taaatttcaa agcattgcca caggtcctgt tgcagctctt gagtctataa
      661 aacatttagg gacaaatggg ggggggtggt ttttttggtg ctaattcaag catgcctttt
      721 gaaaatcctg ctttacttac aaattttttg caaattttat ccatgatgct tattcctagt
      781 gcctgtgttg tagcttttgg attgatggtt tatcatagaa aagaaagaca aggttttgct
      841 cttatgggaa aagaaggggg agttattttt ggtgcaatgg ggattatttt tatcatttct
      901 ttgcttttag tttattttag cgaaaaaatg tcaaatccaa atttggattc tttgggttta
      961 aatgcaaatt tgggaaattt ggaaggtaaa gaaataagat ttggcacaga tggttcgagt
     1021 ttatttagtg ctgtaactac tgcttttact gcaggaagcg tcaataatat gcacgatagt
     1081 ttaaatccat taagtatcag tgctactttg ctaaatatga tgctaaatgt agctttcggt
     1141 ggcgaaggag tagagggctt atgaatatat tatttatgtg ctcttaaccg tgtttatttg
     1201 tgcattaatg ataggtagaa ctccagaatt cttgggtaaa aaaatagaaa gcgcacaaat
     1261 gaagcttata gctttggtaa ttcttatcca tcctttatta atccttgttt taagtgcatt
     1321 agctgttgtt tttgcaaaag atagtataag caatcctagc tttcatgact tggctcaaat
     1381 tttgtatgaa tttagttctt cggcagcaaa taatggttca ggacttgaag gtttaaaaga
     1441 tgataattta ttttggaatt taagcacagc ttttgctatg ttttgtgggc gttatttggt
     1501 tttaatagct cagcttgcta tagctggatc gcttttggct aaaaatacac aagaaaatac
     1561 tgcaaattct ttaaaaacgg ataatttaac ttttatgttt gtgcttgttt gtattatata
     1621 tatttttgct gcacttactt tttttccagt gcttacttta tcaagcgttg cagaatattt
     1681 atctttatgg cattaaggag agtcaatgtc taaaaaacaa aataaactca ttacaaaaga
     1741 aattttaaat aatgccataa aaaaaggaac atttttaaaa tttgatccac gcttgatggt
     1801 aaaaaatcct gttatgttta tggtggaagt tggatcgatt cttactttga ttttaagtat
     1861 ttttcctact ttatttaatg gaaattctga tgaaagaatt tataacatct taatcacttt
     1921 tattttattt ataatcttgc tttttgcaaa ttttgcagaa agtattgcag aaggaagggg
     1981 taaagcccaa gcagctacct taagacaaag caaaaaggat tctaaagcta gacgcataaa
     2041 aagtgatggc agtgaagaaa tgcttaattc tagcgagtta aaaataggtg atatagtttt
     2101 agttaaagca ggtgaactta tacctaatga tggagaaatt atagaaggtg ctgcaagtgt
     2161 tgatgaatca gctattacag gtgaaagtgc acctgttatg cgtgaagcgg gcggtgattt
     2221 ttcttctgtt acaggtggga ctacggtttt aactgatttt ttaaagatta aaattttagt
     2281 tggagctggg gaaagttttt tagataaaat gatcaatctt gtagaaggtg ctgcgcgtca
     2341 aaaaactcca aatgaaattg ctcttaatac tcttttaatt gcacttagtt tgagtttttt
     2401 ggtggtggtt gtaagtttat atccttttat acaattttta ggcgtgagtt tgcctatttc
     2461 atggttagta gcattgcttg tatgtcttat tcctacaact ataggggggg ggggctttat
     2521 cagctatagg aatagcaggt atggacaggg taacgcgttt taatgtgatc gcactttcag
     2581 gcaaggctgt tgaaagttgt ggtgatgttg atactatgat tttggataaa acaggaacga
     2641 ttacttttgg aaaccgttta gcaaatgaat tttatgaagt ccaaggtata agtaaagaag
     2701 aaatgattaa agcttgtgtt ttatcctctt taaaagatga aactccagaa ggtaaaagca
     2761 tagttgcatt ggcttaaaaa atgggttatg aattagaagg taatgatatt aaagaattta
     2821 tcgaatttag cgctcaaaat agaatgagtg atgtggattt gcaagataat ataaaaattc
     2881 gcaaaggtgc ttttgatgct ataagagctt atataagcga aatgaatgga aaaattccta
     2941 gcgatttaga aactaaggta atggaaattt caaatcttgg tggtactcct ttggtagtgt
     3001 gtaaaaatga aaaaatttta ggagtgattt atctaaagga tacagtaaaa cacagtaaaa
     3061 ccaggactta aagagcgctt tgatgagctt agaaaaatgg gcataaaaac ttaatgtgta
     3121 ccggagataa tcctttaaca gcagctacta tagccaaaga agcagggctt gatcgattta
     3181 tagcagaatg caagcctgaa gataaaatag aagctattaa aaaagaacaa gcccaaggta
     3241 agatagtagc catgacagga gatggaacca atgatgctcc agctcttgca caagctgatg
     3301 taggtatagc tatgaactca ggaactcaag cagctaaaga agcagccaat atgatagatc
     3361 ttgattctaa tcctactaaa attttagaag tagttgaaat aggaaaaggt ttgcttatta
     3421 ctagaggcag tcttacaact tttagtatgg caaatgatat tgctaagtat tttgctattt
     3481 tacctgctat gtttagtgtg gttttacctc aaatgcaaat tttaaatatt atgcatttag
     3541 ctaccccgca aagcgctatt ttatcagcac ttatttttaa tgctattatt atacttttgc
     3601 tcatacctat tgctatgcgt ggagttaaat ttaagcctat gaaaagtgag catttgcttt
     3661 taagaaattt gagtatttat ggtttaggtg gtatgatagc accttttata gggataaaaa
     3721 taattgatat tcctacagct tggatactta gaattttagg agtgtgatat gcttagaact
     3781 ttgcttagtt tttttgtggt aatgctaata ttgtgtactc ttatttatcc ttttgcttta
     3841 aatacagttg caaaatttat ttttccttat caatcaagtg gaagtttagt gggtaaagaa
     3901 ggtcgtccga ctttggatat aagcaaagcg gtaggttcaa aacttttggg tcaagatttt
     3961 aataagcctt attttctaca ttcaagagca tctgtatcaa attacaatac aagtgataca
     4021 aatgaaagca gtgtaagttc aggtggattt aattatgcta tgtcaaatcc tgctttaaaa
     4081 gagcgtgtgc aaaaagattt gcaaaaattt ttagatgaaa atccacaaat tacaaaagaa
     4141 caaattcctt tggatttatt aagcgcttca ggatcaggat ttgatcctca tatcagtctt
     4201 caagcagccc tagtgcaaat tcctaggata agtcaatctt caaaaatcat caaagaagaa
     4261 ttagaaaaaa tcattcaaga aaatacagag tctaaatttt tagggatttt tggggaagaa
     4321 aaggttaatg ttgtagccgt taatatagct attactaaag ccatgaaaaa agaataaaca
     4381 tgtaaagaca aagtcctgaa caaattctaa aaaacttgag gttaaagcta aggaagaaga
     4441 aaaaaacaaa cttgcaaaat taaaaatttt cttaggttat gctgcaggtt ctggaaaaac
     4501 ttatgctatg ttaagtgaag ccagaacttt aagggataat ggagttgatg ttgttttagg
     4561 ctatatagag cctcacgata gacctgaaac aatggcttta gcacaaggtt ttgaaagtat
     4621 agctaatctt gaaattcctt ataaaaatat agtattaaaa gaatttgatt tagacgctac
     4681 ccttaagaga aagcctgctt tggttttagt agatgagctt gcacacacta atgctaaagg
     4741 cttgcgtaat gaaaagcgtt ttcaagatat agaagaactt ctaaaagcag ggattgatgt
     4801 ttatactact ttaaatatac agcatttaga aagtttaaat gatttagtcg ctaatatcag
     4861 taagatagaa gttaaagagc gtattcctga tcgtattttt gatgaggctg atcaggttga
     4921 acttgttgat attgaatcta ataagctttt aaaaagaatg caagatggta aaatttataa
     4981 ggaaaaacaa gccaaactag cacttgaaaa tttctttcgc caagaaagac ttatagcttt
     5041 gcgtgagatt gccttaagaa gacttgcttc aagagtgaaa ttaagagcaa gtgaacaaag
     5101 gcttattaat gatgatttag cttatcatac tggagagcat attttagttt gtattaatgc
     5161 ttcaaatgca aaggttattc gtgcggctgc aagacttgct ttagcttttc atgctaaatt
     5221 gagtgcgctt tatataaaaa atcccaatat taaagaagaa aaagccttag aagaaaatat
     5281 agaactagct aaaagttttg atgctgaaat cattagcgta tatgatgatg atatagcaag
     5341 acaaattgca gagtattcaa gtcttagcaa tgtttctaaa attgttttag gtaaaaataa
     5401 agataaaaaa agtttaaaga agagattttt gaagctgttg ctaaaaaagc acccaatatt
     5461 gatttatatc ttgttaatga aaatcaaatt tctactccta aaatacgaag taaaaaaggt
     5521 tttgattttt taggtttttt aaaaatcaca ggagttttgc ttttagcaac ttttatagct
     5581 tttgtatttc ataaatttaa tactcagcca agtaatatgg ttatgatttt tattttagca
     5641 gtttttgctt cttcttttat ttctgataat aaaattttcg ccttttattc ttctttggta
     5701 agtgttttga tttataattt tttcttttta gaacctattt ttagtcttaa agttcatgat
     5761 agtggaaata ttattacttt tacaaccatg tttatagttg gatttttaac agctgttttt
     5821 actagaagat taaaattgca atctaaagaa ctcactaaaa gagcttatag aacagctatt
     5881 ttgcttgaaa atagtgaaaa tttagcaaga gtgaaaagca aacaagagct ttgggaacaa
     5941 cttggaaatc aagctttaaa attattaaat ttgcctatta ttatttatcc tataaataaa
     6001 aacaatattt tatcgaaacc tttgttgttt tttaacgatg ataagcaaat gttaaaaaat
     6061 tgttttagtg ctgatgagat tgctattgct caatgggttg caacaaataa agaaagagca
     6121 ggtgtttgta caaataccct gcctaatgct aatgctaatg ctatgtattt acctatagaa
     6181 gataggaaaa aactaaaggg gttataggta tagttttaaa agaaaaacgt cccttgcaag
     6241 actttcagta tgaaatttta agtgctttgc ttaatgaggc aggagttaga acaagggata
     6301 tatttttatt ataaatccct taatttatta atctcatctc taatagcagc agctttttca
     6361 aactcaagtg ctttagctgc ttcaagcatt tgttttctta actctttgac aagtttagct
     6421 ctttcgctag caggcatttt ttctagtttt ttacctttgc gataaatttc gcctaaatcc
     6481 tcttcatttt tcaaactctc ttcaatatgg cgtttgactg aagttggcgt gatattgtat
     6541 tttttattat aagccatttg aagtttgcgg cgttcatttg tggtatccat agcttcttgc
     6601 atggattttg tgattttttt gcaaaaaagc aaaaccttac cattgacatt tctagctgct
     6661 cttcccatgg tttggattaa acttgtagtg cttcttaaaa atccttcctt atctgcatcc
     6721 ataatggcaa tgagtgaaac ttcaggtaga tctagtcctt ctctaagtag gttaatgcca
     6781 attagcatat caaaagcacc gcttcttaaa cctcttatga tttcattgcg ttctatagca
     6841 tcgatgtctg agtgcatgta tttgactttt ataccaagct ctaaataata ccttgtaagt
     6901 tcttcagcga gttttttagt tagcacagtc actaaaacac gttcattcct ttgtatgact
     6961 tttttagcct catcaaataa aatttcaacc tgattatcac tatcttttaa ttctattaaa
     7021 ggatcaagca gtcctgtagg acgcatgatt tgatgaaaga tgttttcttt actcagttca
     7081 agttctaaag gtgcaggtgt ggctgaaaca aaaagaaatt gacaattttt atggataaat
     7141 tcatcaaaca ttaaaggacg gttatccaag gctgaaggca aacgaaaacc atagtccacc
     7201 aaggtttgtt ttctgcttct atctcctgca aacatacctc taaattgtgg taaagataca
     7261 tggctttcat cgactataac aagaaatttt ctatctttaa tcgcaaaata atcaaaaagc
     7321 gtataaggag tatcaccttt tttaagtcct gttaaatgcc ttgcatagtt ttcaactcct
     7381 ttacacattc ctgtgcttgt aagcatttca agatcaaatt caaccctttg tttaaggcgt
     7441 tgatattcta cgagtttatt ttcatgttca aaataagcaa ggcgttcgtt aagttctgct
     7501 tttatgtctt ttatcgcttg ttttagtctt gtttcaccta cactaaactg gcttgtagga
     7561 tagagtatga agcgttttaa atctttgcct tttttatttt ctaaaacatt gtaatgatac
     7621 atagcatcaa gctcatcgcc aaaaaattca agtcttacta cttcatcttc ataataagct
     7681 ggataaatgt ctataatatc tccttgaact ctaaaatctg cacgatcaaa aaaattatca
     7741 tttcttttat aacccatatc tacaagtttt tttaaaagtt ctttttgtga aatttgcata
     7801 cctagttcaa agattaaaac catgcctatg tattcatttg gattaccaag tccataattt
     7861 gctgaaacac tagctatgca aactacatct tcataactta aaagagaagc agtagcactc
     7921 agtcttaaac gctctaagtc ttcattagtg gagctgtctt tttctatgaa aacatcagtg
     7981 cgtggaatat aggcttcagg ttgataataa tcataataag atataaaata ttccacatga
     8041 tttttagaaa aaaagccttt aaattcgcta taaagttgtg cacaaaggct tttattgtga
     8101 ctcatgataa gagtgggtat attaagttct ttaatgacat ttgccatggt aaaggttttt
     8161 ccgcttcctg taacgcctag taaggtttga tatttgttgc ctttttttat actttttact
     8221 atacctttta tggcttcttg ttgatcagga ctaggtttaa attcgctggt aagttctaac
     8281 atttttctac tttattttta tttttgaaaa aattttaaaa gaaaatgctt taattaaaaa
     8341 ttaattgaca ataaaaacct aaatttaaat ttttttctgc tacaatatca aataatattt
     8401 tccataaatt acaaattttt taagaaggca aaaatatgtt tgatgaaaaa ataatcaata
     8461 ctatgacaga taaagtaaat gaattaattg aaaagtataa cgaagtttgc gaagccaatg
     8521 aggctttaag aaatgagctt gtaagcgtta aagcacaaaa tgaagcaaaa agtaatcaaa
     8581 ttatgcgttt ggaagaagaa cttaaatctc gcaatataga aagcgaagat atttataaga
     8641 aaatagaggc tgttcttggc agataatcta aaacaagtca ttgttaatgt taatgcaaaa
     8701 gatttcattg ttaagtgcag tgaagaattt gcaaattttt tagaagatga tatcgctttg
     8761 atttcagggg gtactaaaaa aatagaactt aaacgctttg tagatgcgtt tgttaaaaaa
     8821 agttatgaaa attatattct agaaagagaa cttaagaaac taataaaagc aatcaatgaa
     8881 gaactcccga caaaatgaac aaagctttta ctctgcttga gcttgttttt gtgattttga
     8941 ttttgggaat tttgtcaagc ttatctttat cttttatcaa tactacaaaa gatgaggtta
     9001 aaattttaaa attaaaaatg gactatgaaa tgctaagctc agctcttgct ttaatgcgta
     9061 gtcaaatgag acttaaaaat ttaaattttc cagaaatttt agataatgcg caaaacaatc
     9121 aagccaaaga aaaactcttt tattgtttaa atgattgtga ttattctttg cttgatacac
     9181 ctatttattc tgattttaaa tcttggataa aaataggtaa aaatcactat agatttgcat
     9241 taaatgctaa agagatggtt gaatttattt atgattctaa agaaggtttg ttaaaatgta
     9301 taggaagttc tagatgcaaa gatctgatat aagatattat gaacttgcaa tttgtggttt
     9361 gtatttggat aatttaactt ttcatagttt tgatgaaatc aaacctttaa cacaagtatt
     9421 agtggattta aaatctaaaa aaaatcttaa agccatcgta cttaaagaat gtcaaaaacc
     9481 tgattttaaa actatagaaa ttaaagaaat tacaaagtat tttctaactc ctttgcaact
     9541 tgaattggca aattttattg tttattatta tgcttcaaaa cttggttttg ttttgggttt
     9601 ttttgaaact agtcctaagt atgaatgtca aaaaatgttt tttaaagata cccctaagct
     9661 aagcaatcaa caacaaaatg ccttaagttt tcttcaaaaa gaaaataatt ctttgctttt
     9721 tgctgacaca ggtagtggta agactgaaat ttatatttct ttaataaaag agtgtttaga
     9781 acagggtaag caagctttac ttttgatgcc agaaatcgca cttactccac aaatgcaaaa
     9841 gcgtttagaa gtatatttta aggataattt tttcctgtgg cattctaaaa tttcaaagaa
     9901 aaaaaagcaa gaatatttag agtgtttttg caagggagaa gtgcttttag tagcgggtgc
     9961 aagatcggct ttgtttttac cttttagaaa tttaggactt attgtagtag atgaagaaca
    10021 cgataattct tataaggctt ctaaccagcc ttttatcaat gcaagagatt tagcactttt
    10081 tttgggtcaa aaaaataata ttaaagtggt tttaggttct gcaaccccat ctttaacgag
    10141 cttttataaa caaaaaagtt ttagactaaa aggaactttt tttgagagta aaaaacattt
    10201 tttatatgat gaaaatgagc tcggtataac acctatgctt ttaagcgaat tagaaaaaag
    10261 tttaaaacat caaaaacaag ctatagtgtt tttacctaca agggctaatt ttaggcaaat
    10321 catttgcaag gattgtggag aaacgataaa atgtcctttt tgttctattg ctatgagtat
    10381 gcataaaaag aaaaatattt taaaatgtca ttattgtaat tatacttctt taatagagca
    10441 aaattgtcca agttgcaaag gagaaatgtt agaagctaga aaaattggga ctgctgaact
    10501 tttagagctt ttgcaaaatg ctttgccttt agcaaaaata gcaaaatttg atagcgatga
    10561 aatcacaagc gttaaaaagc ttaatactat tttaaaaaac tttaatgaaa ataagatcga
    10621 tatacttatt ggcacttcta tgcttgctaa aggacatgat tatcatagtg tggatttgag
    10681 tgtgatttta gggcttgatg aatatttgtt gcgtcctagt tttagagcga gtgaagaaac
    10741 tttagcttta gctatgcaag ttgcaggcag ggcagggcgt aaaggcgaag caagagtact
    10801 tttgcaaaca aaaaatagag ctttttttga aaggtatata gagaattatg atgctttttt
    10861 aaaagatgag ttagaaaata gaaaagatct ttacccccca tttaaacgcc ttttaagagt
    10921 tcttatagaa gataaagatc aaaaaagtgc acaaaaactt tgtgaaaaat ttgcttctca
    10981 atttagaaat atcaaacagg tagaattggt aggctatgga atttgtggag ttgaaatgct
    11041 gtatggaaaa tatcgttttt atttgttgct tagaagtgaa aatcataaag ctttagtggc
    11101 aattgaaaat tatattttgc aatttaaaaa tgcaagtgcg gatattgatc ctattgattt
    11161 tgtgtaagtg atatgattat ttatctttgt atattttttc aaattcttta taatatttcc
    11221 aagaatcaat aatatgagga tgtgtttgtt ttaaatgatt tagttcattt tcaaatatat
    11281 taaaaaaagt gtaaataagt gatttatttt ttataaaata atctattaca tctttttctt
    11341 tcatcatttt tgattctgtt tcatctatgg ttattttaat ttgatataaa aaatcataca
    11401 aataatgttt aattgttgaa aataaaagat tgttttgttc taattgctta aaatcatttt
    11461 tatcaatata tacacccata tcattacata ggtcgttttt tataatttct tgtattatgt
    11521 ctattttttc atgattgata tgttttctgt ctaaaattat gggaatgcta gaagttctat
    11581 caatattgaa atttttatta tttttaggag tattgagata aaaggtgtta ttaatatctt
    11641 tagaatttgc ataaagtgta ataggaaaaa gatagcgaat ataacctcta aattctttaa
    11701 ttttaaataa atctaattta tctttatggg ggggggtaaa attaaaattt atagcaagta
    11761 aattcatggt atcgaaggcc tttgattggc ggatttcttc catatcaaga tagtatacat
    11821 tgtctttgtt aaaatatttt aataaataag agatgataaa aactccttgt tgtagttcat
    11881 ttatatcgat tttaatttta tgattttgat gagtaagata gttgatgtaa taacgccaat
    11941 cataagttag attaaattca gggggatagt ttcttaaaac tttactccaa tctcttcccc
    12001 agctatgctt taaaagtcct attggatctc gaactccgca aataatctta gaattaaaat
    12061 ctaataaaga tagatattta tcaaaataag gtagattaat ttctgatata ttaatagcat
    12121 attgagcaat tgtattatca tttagacaca tgtaattaat acaatatctc tctttgctat
    12181 caggtggtaa aacccaggag gcaaaacaag ttacatcgca acattgatta aggtatctta
    12241 aaaatgctgc tgctccaacg ccatgtggag aaatatagat aaatttatag tgtttaggta
    12301 ggggtaaatt taaatcccaa gctaattctg cgcaatgtcg actagaatct atttctataa
    12361 aattaggatt gattaaaggt ggataaggat gttttgttga taaatatcta tccctaaatt
    12421 cgttagaatt gagccaagtg caaattgttt caatattttt caaaacaaag gtaaaaaatt
    12481 tttcattatt cgaatttttt aaagcttgta aaagaatttg agctagggtt ggagttaggt
    12541 tattttttat atagagtaaa agattttgca tataacctct tttaattgta tttaattta
//
LOCUS       DAPIWJ010000049        12515 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.049, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000049 DAPIWJ010000000
VERSION     DAPIWJ010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12515
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.049"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            22..3386
                     /locus_tag="RJ259_001093"
                     /pseudo
     CDS             22..3386
                     /locus_tag="RJ259_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345045.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            3588..5342
                     /locus_tag="RJ259_001094"
     CDS             3588..5342
                     /locus_tag="RJ259_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366800.1"
                     /translation="MFDKIHYYYFNANYEKCLNLSEQFLKESPKFALEFATLSSYKLS
                     LFQKALYYAQELFSLNPTSFNGLMLAKSYIENLRLDEALNLLQTLLTRKDDLEDELKL
                     ELAFIYKLSNKLEESEQIFKELLSKDMYNLNLWKNYAEIYFKHDFTKALNAHEHLCHF
                     MQDLIDKLQKGIIAEQTNLNLVKLEDRLHSKTKENLTISKIEDFLTHQILPQKAYLLF
                     KLFRISDSLELFQSLQEANQHHAQFWQNYAKVLEFNSNYQEAYHAYKKCLSLDSHATY
                     QFDLAYLLMRMGVDDNFEEGKKYYESRLFYAHNETFSTYHYNESLKAFNKFGVDAFKN
                     KEVLVFCEQGFGDTIMYARCLEKLCKIASKVLFAPQSAMYEMFKNQIKFLNQNDDIFK
                     NVKVLKNLPTNFDYAIPICSLPFFIDIKLDEILRLKTPILPQKKPHNQRKKLGIFYAT
                     PNAENSDLLRSVKFEFLFDVLKDLDYEIISFQMQLKEELPKVIEDRSKLIKNWNDTLN
                     YLYDIDCMLSIDSAIAHLSLAMDIPTIVLLHPRFDWRWGKFENPKSYFWPKAKCFIIK
                     EQEETKRNLQKLIKDILN"
     gene            complement(5346..6113)
                     /locus_tag="RJ259_001095"
     CDS             complement(5346..6113)
                     /locus_tag="RJ259_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366801.1"
                     /translation="MKMRYCFILFLSLVLSSNLLANNFSQKKVIKIEKSADSFEVIDL
                     NQNVANPNLNQQKALFDSSTLIEKKSQITKDKDIDFAIVLTSRKNFGYFLDGFRVSDK
                     EFSTLFAKNLIQSLKLNWVNSAANGIYQSPKTLSYFSPKDAKLINVSPFLTQEKDKAK
                     MYAKFTDYVVVVNLQDFYVNITNYFITTSKEGVASVNFKIISTSNGKILAAKNAELNL
                     TLKDQDAKQNYQDIINQMPKMLADVIKNQIFHLKLLN"
     gene            complement(6153..6917)
                     /locus_tag="RJ259_001096"
     CDS             complement(6153..6917)
                     /locus_tag="RJ259_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HDV7366802.1"
                     /translation="MLNLDKFLEIAINASNQASKAILEERKNFKTWEKEDKSPLTSAD
                     LASNKILNDILGSTDIKILSEEKLLSKEECEELKTFWLIDPLDGTSGFLKGSDEFCVM
                     ISLVHDNRPVLSLIQNPSKGDIFYAHAKTKVYKNDKPLQIDQQEYEKNKYKALLSVNH
                     LSKEDEDFAKEHQLEAINIGSGLKFCAILEARAGVYKRFEKLNIWDIVAGDFLINQNG
                     GFMGDFSKKYILYSPLNYKSSPFICVSSRNFLQDFL"
     gene            complement(6997..8265)
                     /locus_tag="RJ259_001097"
     CDS             complement(6997..8265)
                     /locus_tag="RJ259_001097"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HDV7366803.1"
                     /translation="MSNSVTITDNRNGKSYEFPIYDGTTGPSVVDMSSFYKQTGMFSY
                     DEGLTSTATCKSKITYIDGENGILMHRGYPIEWLAENKLYLDVVHLLLYKELPDATRL
                     EAFRYEMKKRSFIHEGMHRLFDSFPDNAHPMAVLQGAVSSLSAFYPDHLNMNVKEEYM
                     EMAARIVAKIPTIVATAYRYKHGFPMAYPNLDRGFTENFLYMLRTYPYDHVELRPIEV
                     KALDTVFMLHADHEQNASTSTVRAVGSTHVHPYACIAAGIGALWGHAHGGANEGVIRM
                     LEQIGSVDRVDEFIKRAKDKNDPFRLMGFGHRVYKNFDPRAKVLKKLRDQLIDELGID
                     TNLIKVATRIEEIALSDDYFVQRGLYPNVDFHSGLILKALGIPNEMFATLFVIGRTPG
                     WIAQWIEQKEQESLKIVRPRQLYLGETSKI"
     gene            complement(8380..9555)
                     /locus_tag="RJ259_001098"
     CDS             complement(8380..9555)
                     /locus_tag="RJ259_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HDV7366804.1"
                     /translation="MHQSVIDTQALIDLKILIVIALCLLFSPHIAKILRLPLSATEII
                     LGAIIAHFGFIGKSENFALLANVGFYYLMFIAGMEVNLRAFFNMDKEIAKKSFFYIFL
                     LYALSSFIVWIFGLSLVFVIIIPVMSVGLLSLLFKDFGKECYWLNIAMIVATLAEVIS
                     IVLLTIAGAFLREGTGIIDVAQSILYLNIFLGLCLLGFKMLGVLFWWYPQLKVVLMPW
                     EDKNEKDIRFCMAIFILIIVAMVITKLEIVLGSFIAGSFIATFFDHKKDLEHKLSTFG
                     HGFLIPIFFIHIGSTFDLKMILDYKIVLQAFLLMFVMVGLRILCASVFLKRIGFKNMI
                     LFGLSHSMPLTLLIATATLGYSGKVIDEKLYSALILTALFEAIIVMSMIKFLSNSKK"
     gene            complement(9536..10372)
                     /locus_tag="RJ259_001099"
     CDS             complement(9536..10372)
                     /locus_tag="RJ259_001099"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HDV7366805.1"
                     /translation="MQIMLCAISNIASGNCSEDCKYCTQSAHVKTDIQKYRRKELSQI
                     VLEAKMAKKNEALGFCLVTAGLGLDDEKLEYVCEAAKAVQKEVPNLLLIACNGMASVE
                     QLKELKKAGIFSYNHNLESSKEFFPQICTTHTWESRFQTNLNAKEAGLMLCCGGIYGM
                     GESEEDRLSFRKSLQELQPFSTPINFFIANENLKLQVPRLSADEALKIVRDTKEALPQ
                     SVVMVAGGREVVLRERQYEIFQAGAGAIVIGDYLTTKGEEPSQDIIKLKEMGFTFASE
                     CH"
     gene            complement(10374..12476)
                     /gene="topA"
                     /locus_tag="RJ259_001100"
     CDS             complement(10374..12476)
                     /gene="topA"
                     /locus_tag="RJ259_001100"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HDV7366806.1"
                     /translation="MKKNLIIVESPAKAKTIGNFLGKDYEVIASKGHIRDLPKSSFGI
                     KIEDDEFIPEYRITSDHSALVKELKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKD
                     ENTLPRIVFHEITKSAIENALKNPRKLNMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQ
                     RGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLT
                     ITNKDRAKLILEACKNEVYSISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTM
                     MIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAVENARKFIQANFGKDYLPSKANVY
                     TTKTKGAQEAHEAIRPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMSPAISQTQ
                     NVFVKNDRVVFKISGRKILFDGYYKVYGDMDKDKILPNFKIGQNLKVQNLEMNSHFTE
                     PPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVTIDKKQLIPSDVAFNVTEVL
                     EKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPFMRKIEEGKTKIASQKTV
                     TKLGESCPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKSESKNESENTAAKAKANG
                     TGITCPSCQKGEIVERFSKRGKFYGCSAYPKCNFISKYKPSEEKCEECGETLVIKELK
                     KGTFLECLKCKIKKEMKD"
BASE COUNT         4326 a         1994 c         1908 g         4287 t
ORIGIN      
        1 ttataaaggg aggaaaatct tatgaaaaat atcacattaa ctaaaatacc tataggagag
       61 ggcaaagaac cctgtttaaa ttctaaaaag atagttttat ctttagctac tatttctttt
      121 ttggcaagtt gtgctaatgc taaattaaat tctgaaataa aaacttatga tgaagttaat
      181 aaaaatgtta aaactagatc agcaagtgtt tatagccctc aagctaagat caatacgact
      241 ataaattctt tacacaatca acaagtaact attactggaa atggaacatc aaattcttta
      301 acaatcggat caagtggaac tctaggtagc ataggcaata caggtaaaat catctatgcc
      361 catgctaatg gtagcaacac tcttactctt gcaaatctta ctaataatag aactattaat
      421 ggtaagattg gtatagaaaa caatggtaat tttacaggaa ctattgctgt caacaccttt
      481 gaaaatacag gtcaaattaa tggacaaatt tacatgggaa tttggggtaa caactcagga
      541 actcttaata tagataaatt tgacaatagt ggaaccataa ttgacaacaa taaaggagtt
      601 tttttgaagg aaagaatacc aacatacaaa cctttaataa cagtggtttt attagtgcaa
      661 ataagggtgt agatataggc aacataggaa ccataaaaaa ttttaataac aacggaacta
      721 tacaaggctc agaagtggga gtggctataa atacaaaaat agatactttt actaataatg
      781 gttttattaa ttcccctggt agtggacaat ggaataatgg tatatggata agtagcaatg
      841 ctaccataga aaagcttgtt aacaatggca caataaaagg aggacattct gctataatgg
      901 taacatctca gcatataaaa actgttgaaa atacaggaat tatacatgct gaaggagaat
      961 ggggttctag tatattatta gaatatggtg gttttataga gcatataatc aatactggaa
     1021 ccataagtag taataatgtt ggtataggtt cagcttatgg agtatttgga acacttacta
     1081 taaaagatgg aggtcaagtt tatgcaaaat acacggcaat aggagtgggt cgatcgcaaa
     1141 ctctaggaga tttatatata gatggacgtt caaataatgg cacagtaagt ggaatttata
     1201 gtgaggaaca tggaatttta ttagagaata actcacaaac tcaaaaaata gaacttaaaa
     1261 atggcggcat tataaaaggt aagatcgatg gtataagatt gataaactcg gcctctttaa
     1321 gtggagaaat gattttatct ggcgaaggtt ctagggtaga aggtggaaga ggtgttggta
     1381 tattgaatcg aagtggaaaa atagaaggct ctataaccat aaaagatgga gcaactgtta
     1441 cagctacttc gaatcgagcc atagctaact ctggctcagg aagtataaca ggtggtatta
     1501 ctgttagtgg gaaaaacact aaacttgaag gaaatataat caatacaggt aatgcttcta
     1561 taggtagtga tatcaagata gaaggtggag ctaaggtaga aggtggtctt gttaatcaag
     1621 gtaatggaag tatctcagga agtgttcaag taagtggtgg tagtagtatt gattccatta
     1681 ccaatgaggg taatggagct atttctggtt caattactgt agataaagat agtaaacttg
     1741 attctatcac taacacttct acatcatcta caggtataag tggttctatt actaacaata
     1801 gtgataataa acttgaaatt tctaattcag gtaatatcgg tggtaagatt gaaagtacag
     1861 gtagtgctga tatggtgatt agcaatagta atggtggaac tattagtggc ggtattagtt
     1921 cttcaggaag tggaagcact agtatttcca attcacaagg ctcaaccata aataacggca
     1981 tcactgtttt aggatcagca caagttgaaa tctccaatca aggctcagta ggtaaagatg
     2041 aaaatggtaa tacagtaact aacaatggta gtggtagtgt tggaatcaaa gattggcttg
     2101 tttctacaga taaaaacaca ggtaaattaa acactgtggt tataggtgga agtggagctt
     2161 ttaatgtaaa agtagaaaac atcaccgtag atcaaagcaa tgttgatctt gaagagctaa
     2221 acgatataaa caacatcatc tcaggtgtta atcaaaacaa tattggcaat ataggaacca
     2281 atggaagtgg agaaatatct ttaagctatg atccaataac aggaaagctt actacagatt
     2341 ttaatcttaa tgcttccata tcaggtgcaa cctttagatc tttaatctct actacttcaa
     2401 gaagatcaac ctttatagat aatgttatgg gtaattctat gcaaagcttt gctttagctt
     2461 cttcaagtaa atctcaaagc atcgctatgt ctgaaaaggg taatttatat gcagatgcaa
     2521 gtgattatat aaagagtgat ttaaataatg gaagctatgg ttctaataaa gaacattctt
     2581 tattcatcct tccttatact tcttcacaga atgttgaact ttctttaaat gaagaaagta
     2641 aaggacacac taaaggaacc attataggtt attctacttt aaaagacagt ggaatatatg
     2701 gtgtgtatgc aggttatgaa gatacaaaaa tgggttcaac ttattttgat attaataata
     2761 gaacctatta tgcaggttta aaatacttta ataccttatt tactacagaa aaagatcaag
     2821 aagtttatat caaagctcaa ggtaaagctg ctttgattaa aaatgattta actaaaaaaa
     2881 taggaaataa tgaagctaaa gctgaaccta attcttatgc ttatggagtc aatacagcct
     2941 taggtatgaa ttttatttct aataaagata tattctctcc tgaaataggt cttgcttatg
     3001 aaggaggtta tactgaagct ttttctatga aagacaccat aggacaagca acagttaaag
     3061 gtggagaaag aacctatgca aactatttaa atcttttctc tactaaaaca agtcttactt
     3121 ggtttagaga ttggttgcct aatttaaaaa cttcagtaga acttggagct aagtttaata
     3181 tcaatcctaa agtagaagct gaggctagat ttggtaatat aaaagtaagt gatgagtttg
     3241 atttaccaag agtacaaaaa tttgtaagca cttcttttat cgttcctgtt aatgaagctt
     3301 tctattttag tttaagctat aatggaatgt ttgataaaga tggcaatacc catacaggat
     3361 ttgctcagtt taattatctt tggtaatctt ataaaagata atacttagtt taattagttt
     3421 actctcctac ttgttaaaaa tttcatcctg ataattttaa aattattagg atggatgttt
     3481 ttattgtatt tatttttgtt ttattattta attttataaa aatataatta tctttttatg
     3541 caacttataa gataatattg gatttaatgc aaccatcaag gaaaaatatg tttgataaaa
     3601 ttcattatta ttattttaat gctaattatg aaaaatgttt aaacttgagt gagcaatttt
     3661 taaaagaaag tccaaaattt gctttagaat ttgctacgct ttcttcttat aaactttctc
     3721 tttttcaaaa agctttatat tatgctcaag agcttttttc tttaaatcct acaagtttta
     3781 atggtcttat gcttgctaaa agctatattg aaaatttaag acttgatgaa gccttgaatt
     3841 tattacaaac acttttaact cgcaaagatg atttagagga tgaacttaag ttagaattgg
     3901 cttttattta taaactgagt aataaactag aagaatctga acaaattttc aaagaattgc
     3961 tttctaaaga tatgtataat cttaatctat ggaaaaatta tgcagaaatt tattttaaac
     4021 atgattttac taaggcatta aatgcacatg agcacttgtg tcattttatg caagatttga
     4081 ttgataaact acaaaaagga atcattgctg aacaaaccaa tcttaattta gtcaaactcg
     4141 aagataggct tcatagtaaa accaaagaaa atcttaccat ttctaaaata gaagattttt
     4201 taactcatca aattttaccc caaaaagcat acttgctttt taagcttttt agaatatctg
     4261 attctttaga actttttcaa tcactacaag aagccaatca acaccatgca cagttttggc
     4321 aaaactatgc taaggtatta gaatttaact caaactatca agaagcttat catgcttata
     4381 aaaaatgtct tagcttggat tctcatgcaa cctatcaatt tgatttggct tatcttttga
     4441 tgcgtatggg agtggatgat aattttgaag agggcaagaa atattatgaa agcagattat
     4501 tttatgctca taatgaaact ttttctactt atcattataa tgaaagccta aaagctttta
     4561 ataaatttgg cgttgatgct tttaaaaata aagaagtttt agtattttgc gagcaaggct
     4621 ttggcgatac tataatgtat gcaagatgct tagaaaaact ttgcaaaatc gcttcaaagg
     4681 ttttatttgc tcctcaaagt gccatgtatg aaatgtttaa aaatcaaatc aaatttttaa
     4741 atcaaaatga tgatattttt aaaaatgtaa aggttttaaa aaatctacct acaaattttg
     4801 attatgctat tcctatttgt tctttgcctt tttttattga tattaagctt gatgagattt
     4861 tacgattaaa aacacctata ttgccacaga aaaaaccgca taatcaaaga aaaaaacttg
     4921 gtatttttta tgctactcct aatgctgaaa attctgattt attaagaagt gtaaaatttg
     4981 aatttttatt tgatgtatta aaagacttag attatgagat catttctttt caaatgcaat
     5041 taaaagaaga attgcctaag gtaatagaag atagaagcaa gcttataaaa aattggaatg
     5101 atactctaaa ttatttatat gatattgact gtatgcttag tattgatagt gctatagcgc
     5161 atttaagttt agctatggat attcctacta tagttctttt acatcctagg tttgattggc
     5221 gttggggaaa atttgaaaat cctaaaagtt atttttggcc aaaagcaaaa tgttttatca
     5281 taaaagaaca agaagaaaca aaaagaaatt tgcaaaaact gattaaagat attttaaact
     5341 aaagcttagt ttaagagctt taggtggaaa atttggtttt tgataacatc agctagcatt
     5401 tttggcattt ggtttataat atcttgataa ttttgctttg catcttgatc ttttaatgtc
     5461 aaatttaatt ctgcattttt tgctgcaaga atttttccat tgcttgtaga aataatttta
     5521 aaattaacac tagccacacc ctctttacta gttgtgataa aataatttgt aatatttaca
     5581 taaaaatctt gcaaatttac caccacaaca taatctgtaa atttggcata cattttagcc
     5641 ttatcttttt cttgtgttaa aaaaggactt acatttataa gttttgcatc cttagggcta
     5701 aaatatgaca aagttttagg actttgataa ataccatttg cagcagaatt aacccaatta
     5761 agctttaaac tttgaatcaa atttttagca aataatgtag aaaattcctt atcactcacc
     5821 ctaaaaccat ctaaaaaata accaaaattt ttcctagaag ttaatacaat ggcaaaatca
     5881 atatctttat ctttggtgat ttgcgatttt ttttcaatca aggtagaact atcaaacaat
     5941 gctttttgtt gatttagatt tggatttgca acattttgat ttagatctat tacttcaaaa
     6001 ctatctgcgc ttttttcaat tttaataact tttttctgag aaaaattatt cgctaaaaga
     6061 ttagaactta aaactaaact taaaaacaaa atgaaacaat acctcatctt catccttata
     6121 aactatttaa atataaaatt atactcttta ttttataaaa aatcttgtaa aaaattccta
     6181 gatgaaacac aaataaaagg actggattta taatttaaag ggctatataa aatgtatttt
     6241 ttagaaaaat ctcccataaa tcctccattt tgattaatca aaaaatctcc tgctacaata
     6301 tcccaaatat taagcttttc aaatctttta taaactcctg ccctagcctc taaaatagca
     6361 caaaatttca atccagagcc tatattaata gcttctaatt gatgctcttt tgcaaagtct
     6421 tcatcttctt tgctaagatg attaacactc aataaggctt tatatttatt tttctcgtat
     6481 tcttgctggt caatttgcaa aggtttatcg tttttataaa ccttggtttt tgcatgagca
     6541 tagaatatat caccttttga tggattttgt atgagtgata aaacagggcg attgtcatga
     6601 accaaactta tcataacgca aaattcatca ctgcctttta aaaaaccact tgttccatca
     6661 agaggatcga taagccaaaa agtttttaat tcttcacact cttctttgct gagtaatttt
     6721 tcttctgata gaattttaat atccgtagaa cccaaaatat catttagaat tttattagaa
     6781 gcaagatctg ctgatgtaag cgggctttta tcttcttttt cccaagtttt gaaatttttt
     6841 ctctcttcta aaatagcttt agaagcttga ttgctagcat ttatagcaat ttctaaaaat
     6901 ttatcaagat taagcatgat tataaacttt ctataagatt ttttaaaatt atacaagaag
     6961 attttgtgga atttttaatt tccacaaaaa ttttaattaa attttactag tttcacccaa
     7021 ataaagttgt cttggacgga ctattttaag actttcttgc tctttttgtt ctatccactg
     7081 agctatccat cctggggtgc gccctataac aaataaagta gcaaacattt catttggaat
     7141 acctaaggct tttaaaataa gtccactatg aaaatcaaca ttcggatata accctctttg
     7201 aacaaaataa tcatcgctta aagcaatctc ttctatacgc gttgctactt taataagatt
     7261 ggtatcaata cccaactcat caataagttg atcacgaagc tttttcagta cttttgctct
     7321 aggatcaaaa tttttataaa ccctatgccc aaagcccatc aagcggaaag gatcgttttt
     7381 atccttagct cttttgatga attcatctac cctatcaaca ctacctattt gctcaagcat
     7441 tctaataaca ccttcattag ctccaccatg tgcatgaccc caaagcgcac caatacctgc
     7501 tgctatacag gcataaggat gaacatgagt tgaacccaca gcacgaactg ttgaagttga
     7561 agcattttgc tcatgatctg catgaagcat aaaaactgta tcaagtgctt ttacttctat
     7621 aggtctaagc tctacatgat cgtaaggata ggttcttaac atatataaga aattttctgt
     7681 aaaaccacga tctaaatttg gataagccat aggaaagccg tgtttatatc tataagcggt
     7741 ggccactata gtagggattt tagctactat tctagctgcc atttccatat attcttcttt
     7801 tacattcatg tttaaatgat caggataaaa agcactaagc gatgaaacag caccttgtaa
     7861 aactgccata ggatgagcat tatcagggaa agaatcaaaa agacggtgca taccttcatg
     7921 gataaaagaa cgttttttca tttcataacg aaacgcttca agacgcgtag catcaggtaa
     7981 ttctttataa agtaaaagat gaaccacatc taaataaagt ttgttttcag caagccactc
     8041 tataggatag ccacggtgca ttaaaattcc attttctcca tcaatataag tgatttttga
     8101 tttacaagta gctgtagaag tcaagccctc atcataagaa aacattcctg tttgtttata
     8161 aaaacttgac atatctacaa cgcttggccc agttgtaccg tcatatatag gaaattcata
     8221 gctttttcca tttctattat cggttatagt aacggaattt gacattttcg ctccttttat
     8281 tgttactttt attaattcta acaaaaaagg acgattatga gtttttttat tattaaattt
     8341 ttaagatttt gtttgctttt ttgagtaaaa aagtaacttt cattttttag aattagaaag
     8401 aaatttaatc atactcataa caataatagc ctcaaataac gctgttaaaa taagcgctga
     8461 ataaagcttc tcatcaataa ccttgcccga ataacccaga gtagctgttg ctataagcaa
     8521 ggttaaaggc atagaatgac taagaccaaa taaaatcata tttttaaaac caattctttt
     8581 taaaaaaaca cttgcacata aaattcttaa acccaccata acaaacataa gtaaaaatgc
     8641 ttgtaaaacg attttataat ctaaaatcat tttaagatca aaggttgaac ctatatggat
     8701 aaaaaaaata gggatcaaaa acccgtgtcc aaaagtagaa agcttgtgct caagatcttt
     8761 tttatgatca aaaaaagtag ctataaatga acctgctata aaagaaccaa gaacgatttc
     8821 aagttttgta ataaccatag caacaatgat cagtataaaa atggccatac aaaatcttat
     8881 atctttttca tttttatctt cccatggcat aagcacaact ttaagctgag gataccacca
     8941 aaaaagcaca ccaagcattt taaatccaag caaacaaagc cccaaaaaga tattaagata
     9001 taaaatactt tgcgctacat caataatacc tgttccttcg cgcaaaaaag ctcccgctat
     9061 agtcaaaagc acaatagaaa tcacctcagc taaagtagcc actatcatag caatatttag
     9121 ccaataacac tcttttccaa aatccttaaa aagtaaagat aaaagcccta cactcatcac
     9181 aggtataatg ataacaaata ctaaagaaag tccaaaaatc catactataa aagaagataa
     9241 agcgtaaagt aaaaaaatat aaaaaaaact ttttttagca atttctttat ccatattaaa
     9301 gaaggctctt aaatttacct ccatacccgc tataaacatt agataataaa aacctacatt
     9361 tgccaaaagt gcaaaatttt cactttttcc tatgaaacca aaatgcgcta ttattgcccc
     9421 taaaataatt tcagtagctg aaagaggcaa gcgtaaaatt tttgcaatat gcggagaaaa
     9481 aagtaagcat aaagctataa caataagaat ttttaaatca attaaagcct gtgtatcaat
     9541 gacactctga tgcaaaagta aatcccattt cttttaattt tattatatct tgacttggtt
     9601 cttcaccttt agtggttaaa taatccccta taacaatagc cccagcacct gcttgaaaaa
     9661 tttcatattg tctttctcgt aataccactt cacgcccacc tgctaccatt accacgcttt
     9721 gcggtaaagc ctctttggta tcacgaacaa tttttaaggc ttcatcagcg ctaagtcttg
     9781 gaacttgtag ttttaaattt tcatttgcta taaaaaaatt aataggcgtt gaaaaaggtt
     9841 gtaattcttg caaagatttt ctaaaactta gcctatcttc ttcactctca cccataccat
     9901 agattccacc acaacaaagc ataagccctg cttctttagc gtttaaattg gtttgaaatc
     9961 tactttccca agtatgcgtg gtgcaaattt gtggaaaaaa ttccttagaa ctttcaagat
    10021 tgtgattata agaaaaaatt cctgcttttt taagttcttt gagttgttcc acgcttgcca
    10081 tgccattaca ggcaattaaa agcaagttag gcacttcttt ttgcacggcc ttagcagctt
    10141 cgcaaacata ctcaagcttt tcatcatcaa gcccaagtcc tgctgtaact aaacaaaaac
    10201 ccaaggcttc atttttcttt gccatttttg cttctaaaac gatttgtgaa agttctttac
    10261 gacgatattt ttgaatatct gtttttacat gagcgctttg ggtgcagtat ttacagtctt
    10321 ctgaacaatt tccactcgct atatttgaaa tagcacaaag catgatttgc attctaatcc
    10381 ttcatttctt ttttgatttt acattttaaa cattctaaga atgtaccttt tttaagctct
    10441 tttatcacta aagtttcgcc acactcttcg catttttctt cacttggttt gtatttgctt
    10501 ataaaattgc attttggata agcactacag ccataaaatt taccacgttt tgaaaagcgt
    10561 tctacgattt cacctttttg acaacttgga caagtaatgc ctgtaccatt agctttagct
    10621 tttgcggctg tattttcgct ttcgtttttg ctttcacttt ttaaatttct tgaatacttg
    10681 cattttggga aatttaaaca cgctacaaat tctccaaaac gcccttttct aatagcaagc
    10741 tctccgccac aatcaggaca actttcgcct agttttgtga cagttttttg actagctatt
    10801 tttgtttttc cttcttcgat ttttctcata aaaggatagt aaaattcttt taaagtttct
    10861 tgccaatctg ccttatcttc tgcgatttca tctagggtat tttcaaggtt tgaagtaaat
    10921 ttactatcta ctatatcgct aaaatttttc tcaagcactt cggttacatt aaaagcaaca
    10981 tcgctaggaa tgagttgttt tttatctatt gttacataat cacggcttgt aagtatagaa
    11041 atggttggtg cataagtaga agggcgacct atgcctaaac tttcaagttt ttttacaagt
    11101 cctgcttctg aataccttga aggtggttcg gtaaaatgtg agttcatttc taaattttgc
    11161 acttttaaat tttggcctat tttaaaattt ggcaaaattt tatccttatc catatcacca
    11221 taaactttat aatatccatc aaaaaggatt tttctaccgc ttattttaaa aactactcta
    11281 tcatttttta caaatacatt ttgagtttga gagatagcag gactcatctg acaggctaaa
    11341 aagcgattgt aaataagtgt gtaaagtttt aactcatctt tgtctaaaaa tttagccgca
    11401 atttctggag taaaacttaa atttgtaggg cgtatagctt catgagcttc ttgagcgcct
    11461 ttagtctttg tagtatatac atttgctttg cttggaagat agtccttgcc aaaatttgct
    11521 tgtatgaatt ttcttgcatt ttctactgct tctttggcta aatttaaact atcggttctc
    11581 atataagtaa taacccccat cacgccttca tgggtattta ctccttcata gagcttttga
    11641 gctatcatca tggttttttt agggttaaaa ccaaggcgat tgctggcact ttgttgtaaa
    11701 gttgaagtca taaaaggagg cggcggagcg atttttcttt ctttgctttc aatgtcactt
    11761 atactataaa cttcattttt acaagcttct agtataagtt tagcacgatc tttgttggta
    11821 atggtaagtt tttctatctt ggctttatca aactcaacta gttctgcatc taaatctttt
    11881 tgaaaaatca tatcaatact aaagtattct aggggtacaa aggcacgaat ttctttttca
    11941 cgatcgacta tgatctttaa agccgcactt tgaacacgcc cagcactaag tcctctttga
    12001 attttttgtc ctaataaagg gctgagctta taccctacaa tgcgatctaa aagacgtctg
    12061 gtttgctgag catttacaga gtgcatgttt aattttcttg gattttttaa agcattttct
    12121 atagcgcttt tagtgatttc atgaaaaaca atgcgtggta aggtgttttc atcttttcct
    12181 atagcttttg caatatgata ggctatagcc tctccttctc tatcttcatc cgttgcaaga
    12241 tagacttctt tggcatcttt ggctttgctt ttaagttctt taactaaggc gctatgatca
    12301 cttgtgattc tatactcagg gataaattca tcatcttcta ttttaatccc aaagcttgat
    12361 ttaggcaaat ctctaatatg tcctttagaa gcgataactt cataatcttt tcccaaaaaa
    12421 tttcctatgg ttttagcttt tgcaggagat tctactatga ttaaattttt cttcattttg
    12481 cacccttgtt aaataaaaag ctgaatttag ctaaa
//
LOCUS       DAPIWJ010000050        12382 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.050, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000050 DAPIWJ010000000
VERSION     DAPIWJ010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12382)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12382)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12382
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.050"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            59..724
                     /gene="dccR"
                     /locus_tag="RJ259_001101"
     CDS             59..724
                     /gene="dccR"
                     /locus_tag="RJ259_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DccR"
                     /protein_id="HDV7366807.1"
                     /translation="MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYE
                     RYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIK
                     KPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
                     LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGY
                     CYG"
     gene            717..1907
                     /gene="dccS"
                     /locus_tag="RJ259_001102"
     CDS             717..1907
                     /gene="dccS"
                     /locus_tag="RJ259_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DccS"
                     /protein_id="HDV7366808.1"
                     /translation="MAKKVIRQILLIYLTTTGIFLTIFFALWYQKLYEELVVLKGATL
                     RENHRNIVISILNSRFTPIDISAKNIAQSTALKFAIFDAKKIVFSNIDFDLRKAKIEL
                     KGRGICDNKVFFLASMSADHYFLRHASNEEVNTNDGLQILIQGEDVGKDLFWIRTKVF
                     SFAIMAFCILGLISYILVKIALKPLEDKISTLNRFIKDSTHELNTPLSVILMSIEQLE
                     HQNLGDNTKFTRIKLAAKSLSQVYSDLVFYNFPNTLETEKQKFDLRILLEERLEYFKV
                     FFEQKKITLKLDLNQANIFAPKSQISKLIDNLISNAIKYNKKGGVISIILKANFLSIA
                     DTGCGISKSNLNHIFDRYTRFNTDQGGFGIGLSLVKKVCDDNDIKIICESVENQGSVF
                     KLNW"
     gene            complement(1950..3587)
                     /gene="groL"
                     /locus_tag="RJ259_001103"
     CDS             complement(1950..3587)
                     /gene="groL"
                     /locus_tag="RJ259_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HDV7366809.1"
                     /translation="MAKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFG
                     APSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEG
                     LRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNL
                     IADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSSPY
                     ILLFDKKITNLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVK
                     APGFGDRRKAMLEDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNG
                     AGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKK
                     DRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQGDEAIGAAIVERALRAPLRQ
                     IAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSV
                     ASMLLTTEATISEIKEDKPTMPDMSGMGGMGGMGGMM"
     gene            complement(3608..3868)
                     /gene="groES"
                     /locus_tag="RJ259_001104"
     CDS             complement(3608..3868)
                     /gene="groES"
                     /locus_tag="RJ259_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HDV7366810.1"
                     /translation="MNFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVS
                     KEITDIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK"
     gene            4030..6570
                     /locus_tag="RJ259_001105"
     CDS             4030..6570
                     /locus_tag="RJ259_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366811.1"
                     /translation="MKKIFYGIVAFVVVLLIALYTILFTSFGNNIVANIAQKKIKENA
                     GLDVNITRFNLRFSSLELQANIANMADCNLQGALSPFKLGFDLDYLISLNQNYAKNLG
                     LNLNQNLSFGGKIQGKASDFTLDGKGYLLGSNVLLNARMYNYSPIALNLDAQNLKIEE
                     ILHLLSYPSYAKGFLNAQAKISAQNLKPDGNIIIKLDTSYINYEAIKKDFSLDLPLNS
                     NPKAEILANVKEDKIYAVSKIYNDYLNLQTQKTLYDMSKNILSTDFNLNIPSLAKLEK
                     LTKTRLNGSLGVIGETSVVNNALSSLNAQVIGLGGEVKASLKNNKIFADINEASLEKL
                     LALAGYGALVSGNLNAKLLNADLDFSNFDLEAKINNAKINTNELKKIAKIELPNTIFS
                     LDAKANAKNSNISYNALLASNLLNIKKLQGTYNLKNSELNTDLNAFIDDLSQFSAIAG
                     QKLQGKADLNAKAHIIGTQIQNLNANANLADGVIKADSNGKKLDLNIDKLDLSKLFVI
                     AGMPNYASGVVNAKVNLDNIDFSNLNGKANLEAKGILNAATLSKILNKNFPNNTSYDL
                     NTKINFKNNIAQFDSVLNSSLADLTKLQGSFDISKMLLNSDFSLKINDFSKLGFLLDR
                     KLKGKAEFNGKVGFDKSLNFVVNSPNLFEGKLQSTFKDNLLLADLNGVDLSSLAQGLD
                     FMDIYQGKADMKANYNLLSEEGEVNLDMKEGKLKPNLITNALKILTLKDITNDVYRTA
                     NAKALIKKENIKLNLNMQADRSYILVQSGALNSKSGALNLPFDIKLDRANFKGSITGT
                     TENPKVNLNAGSVLNSIKNVVGGGVSDGAKSTGDKVDKAVNKLLNKIF"
     gene            6579..7190
                     /locus_tag="RJ259_001106"
     CDS             6579..7190
                     /locus_tag="RJ259_001106"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HDV7366812.1"
                     /translation="MFNGLIREIAKVQSYQNNTLSLKAKYRPNLGDSIAVNGACLSVT
                     KLYEAGFEVELSRESRTHIVIENLKDKVHIEPALRYGDRIDGHLMQGHIDFIGTLEKI
                     QKDENGVDFYISLPKEAMKFMAEKGSIGVDGVSLTINEILKNGIRLTIIPITFKETLF
                     KDYQVGRKINIESDLLARYIYAQLQGKNKGLSWEEVERISYLY"
     gene            7154..7834
                     /locus_tag="RJ259_001107"
     CDS             7154..7834
                     /locus_tag="RJ259_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase family protein"
                     /protein_id="HDV7366813.1"
                     /translation="MGRSRKNFLSLLENDKVGIFCAFDKDYNVFRAKIHNENLFSHLG
                     FKDIEKCVFMDQIHSHKVIIYDENLKNLSCDGLISKEKNIALCVLSADCLPLILYHES
                     GIIAALHSGRKGSFENILKECVDQITMQNSHLDKNKFHLFILPGICAKNYEIDGEILE
                     FAKKEFKEFVQDDKLDLKALVKFQAQNLGIENIKDCGICSFDDESFFSYRRDKTTKRF
                     VSVVYLKD"
     gene            7836..8039
                     /locus_tag="RJ259_001108"
     CDS             7836..8039
                     /locus_tag="RJ259_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366814.1"
                     /translation="MYERKDLRVLKIIQKAREFGDGDLLNEALVKQLIDADFCEINEK
                     EKEELATLLHSLINAKDKALLSN"
     gene            complement(8036..9196)
                     /locus_tag="RJ259_001109"
     CDS             complement(8036..9196)
                     /locus_tag="RJ259_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDV7366815.1"
                     /translation="MKKLLLLFIFVVQSFAALSVEELTWDNGDTLLKFLQRNSIPMSL
                     YYGLDREDQELASDIAYKIKYQVLKDENNNIEQVLIPISDDLQIHIYKDKDGQYTLAF
                     TPVSYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMVRAFRGSINFRNIQKGDEVTL
                     YYEQKRRMGKLWGDINIKMAMVEINKSAREVFSYNDIFYDRDGKELESFLLTKPVNYT
                     RISSPFTTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGVVTFIGTKGGYGNVIQIK
                     HDSGYMTLYAHLSRFAKIKNGQKVNQGQVIAYVGSTGMSTGPHLHFGVYLNNKAINPA
                     SVVKIAKSELSGKAKENFKHIIAGYEQVVKEALASNQPNPPKEEDFENYIEF"
     gene            9318..10043
                     /locus_tag="RJ259_001110"
     CDS             9318..10043
                     /locus_tag="RJ259_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasminogen-binding N-terminal domain-containing
                     protein"
                     /protein_id="HDV7366816.1"
                     /translation="MFKTIVCFLALNLSLFAVGFDLKPIKSELVKVDDIYGYIKDSDD
                     IKLYSSGVVVQHFSNSQSIIARASVIDKKNGLAKLEFSVFSALKQDALPLPNVLPKVG
                     DEVVLNFLYDRGLVIAPDEQTYNELVREFPQIYFTHIDIFGAQLIRTATLSPKRSDFR
                     QFCDDNAVGILVVALENHAEVVDCQDFNKLYEVPISKPTSVQVPFYSRIGGYKSNFFD
                     FNSQEIGNYYRYYDALINLPKVQ"
     gene            10046..11428
                     /locus_tag="RJ259_001111"
     CDS             10046..11428
                     /locus_tag="RJ259_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HDV7366817.1"
                     /translation="MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLF
                     PRNEEDIARILKFCNENNIIVIPRGSGSGFTGGALAVNGGVVLAFEKHMNKILEIDLE
                     NLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
                     DYVMALRAVLPSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLKLIPLPKF
                     KKTAFAIFPSVKSAMNAVYKSLASGVSPVSMEFLDNLSIRAVESKFNKGLPIEAGAIL
                     IADVDGNVKEAIDEDLRNLEYYFLEAGASEFKIAKDEQETADIWFARRNCSQSIAMYG
                     TLKLNEDITVPRSKLPTLLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQ
                     VKKGYEAVEEIFKLTVKLGGTLSGEHGIGLSKAPFMNLAFSEAEMNLMRNIKKAFDPN
                     NILNPFKMGL"
     gene            11432..12238
                     /locus_tag="RJ259_001112"
     CDS             11432..12238
                     /locus_tag="RJ259_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HDV7366818.1"
                     /translation="MKNFFNILLNLRDKEILNYAAALSFYTVLSLIPILFVCFSVFTQ
                     ISSFKAYYEKAKQVIFAFLIPTQQDVVATYIDTFLKNSVNLGIVGLIAMAFTSLAFFS
                     GYDFVINRITKNEPKGLWQSISSYWTLLTLVPLGLGLSFYISGFIQQTLDDYKIGFNF
                     FEILPFVIIWGLFFISYSSSVHKGTLKSLALVSFGAGAIWYIGKNLFVYYVVYNKTYA
                     SVYGSFSTILFFFIWIYISWIIYLFGLKLYYFLNHNHNEGNKIRKNTKKS"
     gene            complement(12182..>12382)
                     /locus_tag="RJ259_001113"
     CDS             complement(12182..>12382)
                     /locus_tag="RJ259_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HDV7366819.1"
                     /translation="HLINYGDLLNFILDEFFKFKIYGTNIHIPFWIFISYLIASLISV
                     RFKYLAFLCIFANFIPFIMIVI"
BASE COUNT         4213 a         1669 c         2070 g         4430 t
ORIGIN      
        1 aagaattttg atacaatgat atatatttaa gagatttgaa gttagaaaga tttaaattat
       61 ggctgctaaa attttacttt tagaagatga tttgagcttg agtgagatca ttgaagagtt
      121 tttaaacgat gagggatatg aagtattttt atgcgataat gcgcaagaag ctttagatat
      181 ggcttatgaa agatattttg atctttggat tttagatgta aaagttcctt taggagatgg
      241 attttcatta cttaaagaat taagaaaaag cggaaagcaa actccagcaa ttttcatgac
      301 ttctttaaac acaacaaatg atttaaaaca aggctttgac gcaggttgtg atgattatat
      361 aaaaaaacct tttgaacttg ccgagttatc tatcagggtt aaagctttgc ttaaaagagc
      421 tttttcacat aaaaatgaag attttgaaga tttaggagat ggatttagat ttgaatttac
      481 tacacaaatt ctttaccata ataataaagc cttgacttta ccgagtaaag aaattaagct
      541 tttgtcttta ttacttaaaa ataaaaacaa ctttttaagt acagagagaa tttttgaaga
      601 actctgggat tatgatgagg agcctagtga gctaagttta agggcttatg tgaaaaattt
      661 acgtaaaatt ttaggaaaag aaaaaattat aaatcaaaga ggcaggggat attgctatgg
      721 ctaaaaaagt cattaggcaa attttattaa tctacctaac aactacaggt atttttttaa
      781 ctattttttt tgcattatgg tatcaaaaat tatatgaaga attagttgtt ttaaagggtg
      841 ccactttgag agaaaatcat agaaacattg ttataagcat cttaaattct cgttttaccc
      901 ctatagatat aagtgcaaaa aatattgctc aaagcacagc actaaaattt gctatatttg
      961 atgctaaaaa gattgttttt agtaatatag attttgattt aagaaaggca aagatagagc
     1021 ttaaaggtag aggtatttgt gataataagg tttttttcct tgcttctatg agtgcagatc
     1081 attatttttt aagacatgct agcaatgaag aagtaaatac taacgatggt ttgcaaattt
     1141 taatacaggg tgaagatgtt ggcaaagatc ttttttggat tagaacgaaa gtttttagtt
     1201 ttgctattat ggctttttgc atattgggtt taatatctta tattttagta aaaattgctc
     1261 taaagccttt ggaggataaa atcagcacac taaatcgttt tattaaagat tcaactcatg
     1321 aactcaatac cccattaagt gttattttga tgagtataga acaacttgag catcaaaatt
     1381 taggagataa tactaaattt acaaggatta agcttgctgc aaaaagtttg tctcaagtgt
     1441 actctgatct tgttttttat aatttcccta ataccttaga aacagaaaaa caaaaatttg
     1501 atttaagaat actacttgaa gaaagattgg aatattttaa agtatttttt gagcaaaaaa
     1561 aaattacact aaagcttgat ttaaatcaag caaatatttt tgctcctaaa agtcaaattt
     1621 ctaaattgat tgataatctt ataagcaatg ctattaaata caataaaaaa ggtggagtaa
     1681 tttctataat tttaaaagcc aattttttaa gtattgcgga tacaggttgt ggaatttcaa
     1741 agtcaaattt aaatcatatt tttgatagat atacaagatt taataccgat caaggaggat
     1801 ttggtatagg gctttctttg gtaaaaaaag tttgtgatga taatgatatt aagattattt
     1861 gcgaatctgt agaaaatcaa gggagtgttt ttaaattaaa ttggtaatca gcaaggaaaa
     1921 tccttgctga taagaggtta gagcagatat tacatcattc cgcccatgcc acccattcct
     1981 cccataccgc tcatatctgg catagtaggt ttatcttctt taatttcact aattgttgct
     2041 tctgtggtta aaagcatact agctacagaa actgcattga gtaaagctac tctttctact
     2101 ttaacaggat cgataattcc actttcaagc atattaacat attcaccttt tgcagcatca
     2161 aatcctgtgt tttcatcttt agcattttct acgctattta caaccacacc tgcatcaaat
     2221 cctgcatttt cagcaatttg tcttaaaggt gctcttaaag ctctttcaac gatagctgcg
     2281 ccaattgctt catcaccctg tagatcaagt ttgattttag cttttgcttt gataagcgct
     2341 gcaccaccac caattactat accttcttca actgctgctt tagtagcgct taaagcatcg
     2401 tcaacgcgat cttttttctc tttcatttca gtttcagttg ctgcacctac tttaataact
     2461 gcaacaccac cacttaattt tgcaagtctt tcttgtaatt tttctctgtc ataatctgaa
     2521 gttgtttcag caatttgtgc tttgatttga ttgactctcg catcaatatt tgctttttcg
     2581 cctgcaccat ttactatggt tgtattgtct ttatcgatga ttacactaga agcttgtcca
     2641 agatcttgta tagtcgcact ttcaagagtt cttccaagtt cttcagaaat cacttctcca
     2701 cctgttaaaa tcgctatatc ttcaagcata gcttttcttc tatcgccaaa acctggagct
     2761 ttcactgctg aaatattaag aacaccgcga agtttattta caaccaaagt tgcaagcgct
     2821 tcaccttcaa tatcttcagc gataattaaa agtggtttgc ctgttttttg aatttgttct
     2881 aaaaccggta ataaatcttt taaatttgta atttttttat caaaaagcag gatataaggg
     2941 cttgaaagct ctactgtcat tttttctgca ttagtgataa aataagggct taaataacct
     3001 ctgtcaaatt gcataccttc aactacattt aattcatcat tgattgattt tgcctcttca
     3061 acagtgataa caccatcttt gcccactttt tccatagcat cagcgattaa atttccgatt
     3121 ttttcatcag agttggctga gattgtagca acttgtgcaa tttctttttt atcttttact
     3181 tcgcgagaaa gttttttaag ttctgctact atagcttcgc aagctttatc cataccgcgt
     3241 tttacctcga taggatttgc acctgctgtg atatttctta aaccttcttt gaaaattgca
     3301 tgagctaaaa ccgttgcagt agttgttcca tcgcctgctt gatcagctgt tttactcgct
     3361 acttctctta cgagtgaagc acccatattt tcaagactat ctttaagctc tacttcttta
     3421 gcaacactta cgccatcttt agtaatgctt ggagcaccaa agcttttttg gattaaaaca
     3481 ttgcgtcctc ttggccccat agttactttt accgcgtcat taagtttttt aacgccctca
     3541 taaagtttat ttcttgcttc atctgaaaaa ataatttctt ttgccatttt ttatcctttt
     3601 ttataaatta ttttaaaatt cctaagatat catctaaatt taaaactaaa tattcattat
     3661 tatcaagttt aatttctgtt ccaccgtatt tagcaaacac gattttatca ccatttgcaa
     3721 tatcagtgat ttctttactt actgctacta cttcacccat taaaggcttt tctttagcat
     3781 tatctggtat aattatgcct gaggctgttg ttttagtttc ttctacgcgt ttaactagaa
     3841 cacgctttcc taaaggttga aaattcattt ttgtccatcc ttaaaaatat tgattttagc
     3901 actctttaat ttagagtgat aatatcatac tataaaaaat gaattttgtc aatactttaa
     3961 attaaaatat ttataaaagt ttagttttat agactaaagt tattttataa aataaactaa
     4021 aggataaaaa tgaaaaagat tttttatggc attgtagctt ttgttgttgt gcttttaatc
     4081 gctctttata ccatactttt tacaagtttt ggtaataata tagtggcaaa tatagcacaa
     4141 aaaaagatca aagaaaatgc gggattagat gtaaatatca cgcgttttaa tttgcgtttt
     4201 tcaagtcttg aactgcaagc aaatattgca aatatggcag attgtaatct tcagggagct
     4261 ttgagtcctt ttaagcttgg atttgatctt gactatctta tttctttaaa tcaaaattat
     4321 gctaaaaatt taggtttaaa tttaaatcaa aatctttctt ttggcggtaa gattcaaggt
     4381 aaagcaagtg attttacttt agatggaaag ggttatttac taggttcaaa tgtactttta
     4441 aatgcaagaa tgtataatta cagccctatt gctttaaatt tagatgcgca aaatcttaag
     4501 atagaagaaa tacttcatct tttatcttac cctagttacg ctaaaggttt tttaaatgct
     4561 caagcaaaaa tttcagcaca gaatttaaaa cctgatggaa atatcatcat aaaacttgat
     4621 acaagttata taaactatga ggcgataaaa aaagattttt ctttagactt gcctttaaat
     4681 tctaatccta aagcagaaat tttggccaat gttaaagaag ataagattta tgctgtaagt
     4741 aaaatttaca atgattatct taacttacaa acccaaaaaa ctctttatga tatgagtaag
     4801 aatattttaa gtactgattt taatttaaat attccttctc ttgcaaagct tgaaaaactt
     4861 acaaaaacta gattaaatgg tagtttgggc gtgataggcg aaacaagtgt tgtaaataat
     4921 gccttatcaa gtttaaatgc tcaagttatc ggacttggtg gagaggtaaa ggcaagtttg
     4981 aaaaataata aaatttttgc agatattaat gaagcaagtt tggaaaaatt attagctctt
     5041 gcaggatacg gagctttggt ttctggaaat ttaaatgcta aacttttaaa tgcagatttg
     5101 gatttttcta attttgatct tgaagcaaaa ataaacaatg caaagattaa caccaatgag
     5161 cttaaaaaaa ttgctaaaat agaacttcca aatacaattt ttagtcttga tgctaaagca
     5221 aatgcaaaaa atagtaatat ttcttacaat gctttacttg cttcaaattt acttaatatc
     5281 aaaaaacttc aaggaactta taatttaaaa aatagtgagt taaatacaga tttaaatgct
     5341 tttattgatg atttgtctca gtttagtgct atagcgggac aaaaattaca aggtaaggca
     5401 gatcttaatg caaaagctca tattataggt actcaaatac aaaatttaaa tgcaaatgca
     5461 aatttggcag atggcgtaat caaagctgat tcaaatggta aaaaacttga tttgaacatt
     5521 gataaacttg atttatctaa actttttgtt atagcaggta tgccaaatta tgccagtggg
     5581 gttgttaatg caaaagttaa tttagataat atcgatttta gcaaccttaa tggtaaagca
     5641 aatttagagg ctaaaggcat tttaaatgct gcaactttaa gtaaaatttt aaataaaaat
     5701 tttccaaaca atacaagtta tgatttaaat accaaaatta attttaaaaa caatatcgct
     5761 caatttgatt ctgttttaaa ttcatcttta gctgatctta caaaactaca aggaagtttt
     5821 gatataagta agatgctttt aaattcggat tttagtttaa agataaatga tttttcaaaa
     5881 ctaggctttt tgttagatag aaaacttaaa ggtaaggcag aatttaatgg aaaggtaggt
     5941 tttgataaga gtttaaattt tgttgtaaat agtccaaatt tatttgaagg aaaacttcaa
     6001 agcacattta aagataacct tttacttgct gatttaaacg gagtggattt aagtagtcta
     6061 gctcagggtt tggattttat ggatatttat caaggtaagg cggacatgaa ggcaaattac
     6121 aatcttttaa gcgaagaagg cgaggttaat ttggatatga aagagggtaa attaaaacca
     6181 aatcttatta ccaatgcttt aaaaatttta acactaaaag atattaccaa tgatgtttat
     6241 cgcactgcta atgctaaagc tttgattaaa aaagaaaata tcaagcttaa tcttaatatg
     6301 caagcagatc gttcttatat tttagtacaa tcaggagctt taaattctaa aagcggggct
     6361 ttaaatttgc cttttgatat taaactcgat agagctaatt ttaaaggaag tattacagga
     6421 actacggaaa atcctaaagt aaatttaaat gcaggaagcg tgttaaattc tattaaaaat
     6481 gtagtgggtg gcggtgtgag tgacggtgct aaaagtactg gcgataaagt tgataaagcg
     6541 gtgaataaat tattaaataa gattttttaa ggtaaaaaat gtttaatgga ctcataagag
     6601 aaattgctaa agttcaatct tatcaaaaca atactttaag cttaaaagca aaatatcgcc
     6661 caaatcttgg cgatagcata gccgtaaatg gagcttgttt aagtgtaaca aaactttatg
     6721 aagcgggttt tgaagtggag ctttctcgtg aaagtcgcac tcatatagtt atagagaatt
     6781 taaaagataa agttcatata gaacctgctt taagatatgg cgatagaatt gatggacatc
     6841 ttatgcaagg acatattgat tttatcggca cacttgaaaa gattcaaaaa gatgaaaatg
     6901 gagtggattt ttatatatct ttacccaaag aagctatgaa atttatggca gaaaaaggaa
     6961 gtataggcgt tgatggggta agtcttacta tcaatgaaat tttaaaaaat ggtattaggc
     7021 ttactattat tcctattact tttaaagaaa cgctttttaa agactatcaa gtaggtagaa
     7081 aaatcaatat agaaagtgat ttacttgctc gttatattta tgcacaatta caaggtaaaa
     7141 acaaaggatt atcatgggaa gaagtcgaaa gaatttctta tctttattag aaaatgataa
     7201 agtcggtatt ttttgtgctt ttgataagga ttataatgtt tttagagcta aaattcataa
     7261 tgagaattta ttttctcatt taggttttaa agatattgaa aaatgtgttt ttatggatca
     7321 aattcattct cataaagtta tcatttatga tgaaaattta aaaaatctca gttgtgatgg
     7381 acttataagc aaggaaaaaa atatcgctct ttgtgtttta agtgcggatt gtctgccttt
     7441 gattttatat catgaaagtg gtattatagc agctttgcat tcaggtagaa aaggaagctt
     7501 tgaaaatatc ctaaaagaat gcgttgatca aattactatg caaaattcac atttagataa
     7561 gaataaattt catcttttta tcctgcctgg aatttgtgct aaaaattatg aaatagatgg
     7621 agaaatttta gaatttgcta aaaaagaatt taaagaattt gttcaagatg ataaacttga
     7681 tttaaaagct ttagtaaaat ttcaagcgca aaatttaggc attgaaaata ttaaagattg
     7741 tggaatttgt agctttgatg atgagagttt tttttcttat cgtcgtgata aaacgactaa
     7801 gcgttttgtg agtgtggttt atttaaagga ttaaaatgta tgaaagaaaa gatttaaggg
     7861 tgttaaaaat cattcaaaaa gctagagaat ttggcgatgg agatttgtta aatgaagctt
     7921 tggtgaaaca attgattgat gcagattttt gtgaaattaa tgaaaaagaa aaagaagagc
     7981 ttgcaactct tctacattct ttaatcaatg caaaagataa agcgttattg agtaattaaa
     8041 attctatata gttttcaaaa tcttcttctt ttggaggatt aggttgattc gaggctaggg
     8101 cttctttaac aacctgctcg tatccagcta tgatatgttt aaaattctct ttcgcttttc
     8161 cactaagttc tgatttggcg atttttacaa cagatgcagg atttatagct ttattattta
     8221 aatatactcc aaaatgcaaa tgaggacctg tgctcatacc tgttgaacca acatatgcaa
     8281 ttacttgtcc ttgatttacc ttttgtccgt ttttaatttt tgcaaaacga ctaagatgag
     8341 catataaagt catataacct gagtcatgct tgatttgaat tacatttcca taaccacctt
     8401 ttgtgcctat aaaggttact actcctttgc cagcactttt cacaggagtt ccagtaggtg
     8461 cagcatagtc tataccaaga tgggcacgat agcgttttaa tataggatga tatcttgctg
     8521 ttgtaaaagg agaagaaatt ctagtgtaat tcacaggttt tgtaagtaaa aaagattcta
     8581 attctttgcc atcacgatca tagaatatat cattataaga aaagacttct ctagcgcttt
     8641 tattgatttc taccattgcc atttttatat ttatatcacc ccaaagttta cccatgcgtc
     8701 ttttttgttc ataatatagg gttacttcat cacctttttg gatattgcga aaatttatac
     8761 ttcctcgaaa agcacgaacc atagcacgag ctaaagtact gctaccactt tcttcataga
     8821 catcttgata agcagagctt ttaatggtta aatgtaaaat tctatcttct ttttgataag
     8881 atacaggagt aaaagcaaga gtgtattgtc catctttatc tttatagata tgaatttgta
     8941 aatcatcact aattggaatt aaaacttgtt ctatgttgtt gttttcatct tttaaaactt
     9001 gatattttat tttataggct atatcagaag caagttcttg atcttctcta tcaagtccat
     9061 aataaagcga cataggtatg gaatttcttt gtaggaattt aagcaaggta tctccattat
     9121 cccaagttag ctcttcaaca cttaaagctg caaaactttg aacaacaaaa ataaataaaa
     9181 gcaataattt tttcatgaga taaccttaat ttttaaaaga attttgaaat ttgaaagcta
     9241 tattttactt tatttttctt acaattgctt aacaaaaaag gattataatt ctataaattt
     9301 ttatttaagg agcaaatttg tttaaaacta tagtgtgttt tttagcttta aaccttagcc
     9361 tctttgcggt tggatttgat ttaaaaccta taaaaagtga acttgtaaaa gttgatgata
     9421 tttatggtta tattaaagat agtgatgata taaaacttta ttcaagtggc gtagtagtgc
     9481 aacattttag caattcgcaa agtatcatcg ctagagcaag tgttatagat aaaaaaaatg
     9541 gtttggcaaa attagaattt agtgtttttt cagctcttaa gcaagatgct ttgcctttac
     9601 caaatgtttt acctaaagta ggtgatgagg ttgttttaaa ttttctttat gatagaggat
     9661 tggtaattgc tcctgatgaa caaacttata atgaacttgt tagagaattt ccgcagatat
     9721 attttaccca tattgatatt tttggagcac aattaattag aacggctact ctttctccta
     9781 agcgttcaga ttttaggcaa ttttgtgatg ataatgcggt cggcattttg gttgtggctt
     9841 tggaaaatca tgcagaagtt gtggattgtc aagattttaa taagctttat gaagtgccta
     9901 taagcaagcc aactagcgtt caggttcctt tttattctcg tataggtgga tataaaagta
     9961 atttttttga ttttaactct caagaaatag gaaattatta taggtattat gatgctttga
    10021 ttaatcttcc taaggtgcaa taaacatgaa aaaagaattt gaacaatatt ttaaacgatt
    10081 tttaggagaa gaaaacgctt attttgatga aattcacaaa agagcttata gctatgatgc
    10141 gacaaaaaaa cattatttac ccgatggggt tctttttcca agaaatgaag aagatattgc
    10201 tcgaatttta aaattttgta atgaaaataa tatcatagtc atacctcgag gctcaggatc
    10261 tggttttaca ggaggagctt tagctgttaa tggcggggtg gtgcttgctt ttgaaaagca
    10321 tatgaataaa attttagaaa ttgatcttga aaatttagtg gctgttgtgc aacctggggt
    10381 tattaatata catttacaaa aagaagtggc taaatatgga cttttttacc cacctgaccc
    10441 tgctagcatg gagtattcaa gcttaggggg taatgtaagc gaaaatgctg ggggaatgag
    10501 agctgcaaaa tatggcatta caaaagatta tgtgatggct ttaagggctg ttttgcctag
    10561 cggagaaatc attcgtgcag ggaaacgcac tattaaagat gtagcaggtt ataatttggc
    10621 aggaatttta atcgctagtg aaggttcttt ggcagtttta agtgagctta ctttaaaatt
    10681 aatacctttg cctaaattta aaaaaactgc ttttgctatt tttccaagtg taaaaagtgc
    10741 tatgaatgcg gtttacaaaa gtcttgctag cggtgtaagt cctgtatcta tggaattttt
    10801 agataatctt agcattagag cggttgagag caaatttaat aaaggtttgc ctatagaagc
    10861 tggagctatt ttgattgctg atgtggatgg taatgttaaa gaggctattg atgaggattt
    10921 aagaaattta gaatattatt ttttagaagc tggcgctagc gaatttaaaa tagcaaaaga
    10981 tgaacaagaa accgcagata tttggtttgc tagaagaaat tgttctcaaa gcattgccat
    11041 gtatggaact ttaaaactta atgaagatat tacagttccg cgttctaaac tacctacttt
    11101 gcttgaaggt atagatgaga tttctaaaaa atatggtttt aaaattcctt gttttggaca
    11161 tacaggggat ggaaatgtgc atactaatgt tatggttcct gataaaaatg ataaagagca
    11221 ggtgaaaaaa ggctatgaag ctgtggaaga gatttttaaa ttaacagtga aacttggagg
    11281 aactttaagc ggagagcatg gtatcggact ctctaaggca ccttttatga atttagcttt
    11341 ttctgaagcc gaaatgaatt taatgagaaa tattaaaaaa gcttttgatc caaataatat
    11401 actaaatcct tttaaaatgg gactttagaa ggtgaaaaat ttttttaata ttttactaaa
    11461 tttgcgtgat aaggaaattt taaattatgc agcagcgctt agtttttata ctgtattatc
    11521 tttaatacct attttatttg tatgtttttc tgtttttacg caaatttcca gttttaaagc
    11581 ttattatgaa aaagcaaagc aagtaatttt tgctttttta ataccaacgc aacaagatgt
    11641 tgttgctacc tacatcgata cttttttaaa aaatagtgta aatttgggta ttgtaggtct
    11701 tattgctatg gcatttactt ctttagcttt tttttcaggc tatgattttg taatcaatcg
    11761 cattactaaa aatgaaccta aaggactttg gcaaagtatt agttcttatt ggactctttt
    11821 aactcttgtt cctttggggc ttgggcttag tttttatatt tcaggtttta tccaacaaac
    11881 tttagatgat tataaaatag ggtttaattt ttttgaaatt ttaccctttg taattatttg
    11941 gggtttattt tttatatctt attcaagttc tgttcataag ggaactctta aaagtttagc
    12001 tttagtatct tttggagcgg gtgctatttg gtatatagga aaaaatttat ttgtatatta
    12061 cgtggtatat aataaaacat acgctagcgt ttatggatct ttttctacta ttttattctt
    12121 ttttatttgg atttatattt cttggattat ttatcttttt gggcttaaac tctattattt
    12181 tctaaatcac aatcataatg aagggaataa aattcgcaaa aatacaaaga aaagctagat
    12241 atttaaatcg cacagagatt aaagaagcaa taagataact tataaaaatc caaaatggga
    12301 tatggatatt agttccataa attttaaatt taaaaaattc atctaagata aaattgagca
    12361 aatctccata gtttataaga tg
//
LOCUS       DAPIWJ010000051        11533 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.051, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000051 DAPIWJ010000000
VERSION     DAPIWJ010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11533)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11533)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11533
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.051"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..145)
                     /locus_tag="RJ259_001114"
     CDS             complement(<1..145)
                     /locus_tag="RJ259_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-to-5' oligoribonuclease B"
                     /protein_id="HDV7366820.1"
                     /translation="MKIYHLSHTDLDGYACQFIVNFYFKSVKFYNSNYGKEINENFNS
                     IIGD"
     gene            complement(154..2328)
                     /gene="flhA"
                     /locus_tag="RJ259_001115"
     CDS             complement(154..2328)
                     /gene="flhA"
                     /locus_tag="RJ259_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HDV7366821.1"
                     /translation="MAKNKIVDLVFPFLGPLIAPVLKAKSLTIVGFLVCILAIIIVPL
                     PSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMIL
                     SEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARF
                     TLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGAMDGSSKFIKGDAVAGI
                     IITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAIIITRA
                     SKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFMALVFLSLGYLTK
                     QVKEGKIDITTVKKSKPSAAAASQSGAGGTTAAPAKKSEEEILKEEEHKINDILKVEI
                     LELELGYGLIKLAENELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLKG
                     VSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIVI
                     DPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGALGVAPVSLIQKIL
                     KDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGNLDI
                     FILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPFILCVE
                     PQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGIIRIEL"
     gene            complement(2315..2728)
                     /locus_tag="RJ259_001116"
     CDS             complement(2315..2728)
                     /locus_tag="RJ259_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RrF2 family transcriptional regulator"
                     /protein_id="HDV7366822.1"
                     /translation="MLFTKASEYALLSLIYISQKETPQDVDSLALELDIPKSFLAKIL
                     QTLAKDGLLKSFKGAKEGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGTCPNNKE
                     ENCTLMPMLVNLQNKVDEFLDSITLEDIMKNNGKK"
     gene            2903..3175
                     /gene="rpsO"
                     /locus_tag="RJ259_001117"
     CDS             2903..3175
                     /gene="rpsO"
                     /locus_tag="RJ259_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HDV7366823.1"
                     /translation="MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLK
                     IYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNSYSKLITELNLRDK"
     gene            complement(3261..6101)
                     /locus_tag="RJ259_001118"
     CDS             complement(3261..6101)
                     /locus_tag="RJ259_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HDV7366824.1"
                     /translation="MLAPGMGEWVYKANLFLFGEFAYYYPFFLFILNYVYYKRNYKLA
                     NFTRRELFGIGFAFFSSLLLFAVFYPNSGYILELAYAIFSTILGHTGSGIFALLLLLF
                     SLVLLFPKFAKEILKIELDFTYLLKVEQAFKSLLMRVFGGENEKEDVGKSEPIVPKLN
                     ILQDSIYGNLQINKKGETNNLEQIIKDSNINASKNSITTAKENFEKLKNQILDETIEI
                     DKQSLKESRSFVHEHSQQVRNFAQKASKMSISLDEDFNFISEEEVDMIPERFLKPKKL
                     EDIKQIDTNKNLDEPSYKRKNIEIPVSNQEVKPKIFTKELELRENLIKKEKLEQEYKA
                     YQNEILENKVKQEIKKLEEYDAINSSDIIEGNKYSFNSPKTIKTETEESDKINENKNL
                     DKADNIFEFAPIVEELNHPYIEPTPIKNINEIVIEEKNTLDFIQNTETKIDNEKTNDQ
                     EIKLQKAVLAKEIAINQALLREIEQGEIEKPKDFTLPPLDFLANPKEHKQEINESEID
                     KKIYNLLEKLRRFKIGGDVISTYVGPVVTTFEFRPSADVKVSRILNLQDDLTMALMAK
                     SIRIQAPIPGKDVVGIEVPNDEIQTIYLREILQSEVFKNAKSPLTIALGKDIVGNAFV
                     TDLKKLPHLLIAGTTGSGKSVGINSMLLSLLYRNSPKTLRLMMIDPKMLEFSIYNDIP
                     HLLTPVITDPKKAVNALSNMVAEMERRYRLMADAKTKNIENYNEKMKELGGEELPFIV
                     VIIDELADLMMTAGKDVEFYIGRLAQMARASGIHLIVATQRPSVDVVTGLIKANLPSR
                     ISYKVGQKIDSKVILDAMGAESLLGRGDCLFTPPGTSSIVRLHAPFASEFEIEKIVDF
                     LKDQQSVEYDESFLKDQQSVGVTTNESFDGEADELYEEAKRVILEDGKTSISYLQRRL
                     KIGYNRSANIIEQLTQNGILSEPDAKGQREIL"
     gene            complement(6211..8463)
                     /gene="flgL"
                     /locus_tag="RJ259_001119"
     CDS             complement(6211..8463)
                     /gene="flgL"
                     /locus_tag="RJ259_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HDV7366825.1"
                     /translation="MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDAS
                     TYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSN
                     SQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGNYYGDKNNINV
                     VTGAGTESPYNIPGWDLFFKADGDYKKQISTNVSFTDNRWDLNKDPDKTKYLTGDSKW
                     QQLIGQSYVKDNSLDADKDFEYDDSKLDFPPTTLYVQGTRSDGTSFKSAVLVKPEDTL
                     EDVMENIGALYGNTPNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQADDKTE
                     LNNIIQAAQDEGITMEDVTNRVMTAALGNPNNGDITNLNNPVTIQINGQNFEIDLKQT
                     DFIKSKMTDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMA
                     GDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPIMHTNPATGNS
                     GVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVD
                     VSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSL
                     TIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNT
                     TMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMINLMQVQLAYQASLKASTI
                     ISQLSLLNYM"
     gene            8644..8730
                     /locus_tag="RJ259_001120"
     tRNA            8644..8730
                     /locus_tag="RJ259_001120"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8678..8680,aa:Leu,seq:caa)
     gene            8741..8815
                     /locus_tag="RJ259_001121"
     tRNA            8741..8815
                     /locus_tag="RJ259_001121"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8773..8775,aa:Gly,seq:gcc)
     gene            complement(8846..10777)
                     /locus_tag="RJ259_001122"
     CDS             complement(8846..10777)
                     /locus_tag="RJ259_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HDV7366826.1"
                     /translation="MALIDLIEASKKFGDKIVLNEVNFSANEGEKIAIIGKNGEGKST
                     FLKTLLGTLPLDSGRIIRQNGKSIAMLSQTVDFNANLSVKEAIKQELVEIYNTLEEYE
                     ILHKKLEEDPSNKDYLQKIDTLMTLIDSKDAWSIESKIIRVLKEFSLLEYENRIISTL
                     SGGEIRRVGLCILLLKNPDILLLDEPTNHLDVYMTSFLEELLKNSKMCVIFISHDRYF
                     IDAIAHKCVEVEQGKLSIFKGGYANYLEKKTQILQSLAKSHETLLKQLKSEEEWLRRG
                     VKARLKRNEGRKERIFKMREEAKKNPGAIKRLKLEISRAALNFNGEKTINRKKMLFEL
                     KNISKNINNKNLFKDFSTRILQGERIAIVGRNGCGKSTLLKILLGQIKQDSGEIKRGE
                     LKIGYFDQARSLVNSDKSLLEIFCPNGGDRVEVRGKNMHVYGYLKNFLFPKEFLDKSV
                     ALLSGGEKNRVALALLFAKEYDVLILDEPTNDLDIATINILEEYLLSFEGAILLVSHD
                     RYFVDKIATKLYAFEGNGYINILHTLYTEYLENEKEIEELDNFALELQTQEQNNNQKE
                     KSSKKLSYKENEILKNHPEKIDFLEQKIAKLNQDLSDPNVYQEIGINKLYQELEVMQK
                     ELEILENEYFLVLEKSENL"
     gene            complement(10781..>11533)
                     /locus_tag="RJ259_001123"
     CDS             complement(10781..>11533)
                     /locus_tag="RJ259_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HDV7366827.1"
                     /translation="VILEKGIFKEFNLLNEKLLKTKDKILKNTQKNKKQSDKITLKNT
                     QLASVISAISHELKNPLSVIDLSLEMLKDEKLEDKKLKKELLEKISRQSVKLNALTHK
                     LNFVFNLNSEALQMQEFDLFSLCEKITKNPGFERVALQGKSTKVKADEFLIEQVIINL
                     LSNALKYSQKKVILTARDQKIIVQDFGKGIEEDKIKLITKKFYKIDVKSDNSFGLGLF
                     LVKKILNIHKSYLEISSTLGYGSSFSFKLSQG"
BASE COUNT         3627 a         2006 c         1562 g         4338 t
ORIGIN      
        1 tatcgcctat aatagagtta aaattttcat taatttcttt gccataatta gaattataaa
       61 atttcacact tttaaaataa aaatttacta taaattgaca agcatagcca tcaagatctg
      121 tatgtgaaag atgataaatt ttcattatat tccttaaagt tctatcctaa taataccctc
      181 ggtattaaaa tttgtatttt ctgcaatttc tgcaaaactt aacactacta tattaatgct
      241 aaaattataa caaatatcag caatgaattt tctaagctgc ggttcaacgc aaagtataaa
      301 aggcttgata cgaccatttg ctactgcggc aacttcagcc cttagagtat ctactaaagt
      361 acctgtttga gctacactta aaggcaagtg ataacttcca tctctaaatt gtacattttc
      421 cattaaaacc gcagaactag cagagtctaa gataaaaata tccaaatttc ctttatcatc
      481 taaatacata tttgtaatca tcctagctaa ggacgccctt acatgttcaa taatcatatc
      541 aaaactcttg cttacttctg ctatatcgct tacagattct aaaatagtaa gcatatcttt
      601 aattggtatg tgatgcttaa gcaagtcttt gagaattttt tgaataagac ttacaggtgc
      661 aacacctaaa gcaccttcta cgatgattgg ataatcattt ttaaccttat caagaagatt
      721 ttgtacctct tggcgtgtga gaagttcgct tgcgtgcgct ttgataagtt cgctcatatg
      781 tgttgaaata acacttgcag gatctattac tatatagcca tttaatgttg cttcatcttt
      841 taaattcgca tcaatccaaa gtgcatcaga gttaaaagcg ggttcttttg tagcaatccc
      901 ttctatctct tctgtgataa aaccactatc catggctaaa tatttatccg gataaatttc
      961 agcacttgct atagacacgc ccttgagttt aaaactatac tcatttggtt taagtcttaa
     1021 attatctctt attcttattt ttggcattaa aaatcctaaa ctttcagcaa tacttcttct
     1081 cattgagcga attctttctg taagttcgtt ttcagcaagc ttaataagtc cgtatccaag
     1141 ttcaagttct aaaatttcaa ctttgagtat atcgttaatc ttgtgctctt cttctttgag
     1201 aatttcttct tcgcttttct tagcaggcgc tgccgttgtc ccacctgctc cactttgaga
     1261 tgcagctgcg gcacttggtt tgcttttttt aactgtagtt atatcaattt taccttcctt
     1321 aacctgcttg gtaagatagc caaggcttaa aaatactaaa gccataaagc ccaaggataa
     1381 agttggcaaa ccaggcacta acgcaaagat aaaaagtaca aaacctacta ttaaaagcgt
     1441 gcgatattcg cttaaaagtt gagttaaagt tccttctgca aaattttcct catctttgct
     1501 tgcacgagtg ataattatag cggttgcagt agaagtaata agccctggaa tttgagatac
     1561 aagtccatca cctatggtta aaatagtata ggtagaagca gcatcgctta aagccatatc
     1621 gtgctgaaaa gatcctatta aaaaaccacc tatgatattt ataatagtta tgataattcc
     1681 tgcaacagca tctcctttga taaatttaga agaaccatcc attgcaccat agaagtttgc
     1741 ctcagcaata acttcttgac gtcttgctct agcggtttgt tcatcaataa gtcctgcatt
     1801 taaatccgca tcaatagcca tttgtttacc cggcatcgca tcaagtgtaa atcttgcttg
     1861 tacttcagaa acccttgtac taccttttgt tacaaccatg aaattaatca atactaaaat
     1921 acaaaataca atcacgccaa tgaccatatt tccaccaaca acaaattctc caaatgctgc
     1981 tataatctca ctcacagctt cagggccgtt ttgcccttcg cttaaaatca tccttgtggt
     2041 agctatattt aatgaaagcc taaataaagt gataatcaag attaaagttg gaaaagttgt
     2101 taaatctgtc ggtttgggta tataaataga aattaaaata attaataccg ataaagctat
     2161 acttaaagcc aagaaaaagt ccaaaatagg acttggtaaa ggaactataa taatagctaa
     2221 aatacaaact aaaaaaccaa caatagtcaa gcttttagct tttaaaacag gagcgattaa
     2281 aggccccaag aaaggaaaaa ctaaatcgac tattttattt tttgccatta tttttcataa
     2341 tatcttctaa agtaatagaa tctaaaaatt catctacttt attttgtaaa tttactaaca
     2401 taggcattaa ggtgcaattt tcttctttat tatttggaca agtgccacca ctgcattcaa
     2461 atacactgat atcctttttt tcagcactat taacaatttc ttttatagta tattgacttg
     2521 gttctttgat taaaacaaaa ccaccttctt ttgccccttt aaaggatttt aacaagccat
     2581 ctttagctaa agtttgtaaa attttagcta aaaaactttt aggaatatca agctctaaag
     2641 ctaaagaatc tacatcttga ggtgtttctt tttgagaaat ataaattaaa gaaagtaaag
     2701 cgtattcgct agctttggta aatagcacag attctccttg ttataactac agaaatagct
     2761 gtaattataa taaataattc ttagaaaaag acttaaattt tgacaaaacc ttctaaaaaa
     2821 gataaattca gtttattttt tgctttttaa gataaaatta cagttcttta attttattat
     2881 tttaccaatc aggaggtcta tcatggcttt ggattcggcc aaaaaagcag aaatagttgc
     2941 gaaattcgct aaaaaaccag gtgatactgg ttcaacagaa gttcaagtag ctcttttaac
     3001 tgcaagaatt gcagaactta cagaacattt aaaaatctac aaaaaagact tttcatcaag
     3061 attaggactt ctaaaacttg taggtcaaag aaaaagactt ttatcttatc ttaaaagaaa
     3121 agattataat tcttatagta agttaattac tgaattaaat cttagagata aataattttt
     3181 aagccctttt tacggggctt ttgcctttta aatttcttct tttgtaatca gttttatata
     3241 tcaaaaacac aagaaaaatc ttacaagatt tccctttgtc ctttggcatc aggttcgctt
     3301 aaaatcccgt tttgcgtaag ttgttcaata atatttgcag agcggttata gccgattttt
     3361 aaacggcgtt gtaaataaga aatgcttgtt tttccatctt ctaagattac tcttttagct
     3421 tcttcataaa gctcatctgc ttccccatca aagctttcat ttgttgtaac acctacgctt
     3481 tgctgatcct ttaaaaagct ttcatcatat tctacgcttt gttgatcctt tagaaaatcc
     3541 acgatttttt ctatttcaaa ttcgcttgca aaaggcgcat gcaaacgcac tatagagctt
     3601 gttccaggag gagtaaataa acaatcccct cttccaagta aactttcagc acccatagca
     3661 tctaaaataa ctttagagtc aattttttgc cctactttat aagaaattct acttggtaaa
     3721 ttcgctttaa ttagtcctgt tacaacatca acagaaggtc gttgtgtagc tacaatcaag
     3781 tggattccac ttgctcttgc catttgcgca agtcttccta tataaaattc tacatcttta
     3841 cccgcagtca tcatcaaatc agcaagttca tcgataatta ctacaataaa aggaagttct
     3901 tctccgccta attctttcat tttttcattg taattttcta tatttttggt ttttgcatca
     3961 gccattaagc gatagcgtct ttccatttca gctaccatat ttgaaagcgc attgactgct
     4021 ttttttggat ctgtgataac aggagttaaa agatgaggaa tgtcattata aatgctaaat
     4081 tcaagcatct taggatctat catcatcaaa cgcaaggttt ttggagagtt gcgatataaa
     4141 agacttaaaa gcatagaatt tatccccaca cttttaccac tacctgtcgt tcctgcgatg
     4201 agtaaatgcg gaagtttttt aagatcggtt acaaaagcat tgcctactat atctttacct
     4261 aaagctatgg ttaaaggact tttagcgttt ttaaaaactt cactttgtaa aatttctctt
     4321 aaataaatgg tttgaatttc atcatttgga acttctatac ctacaacatc ttttcctggt
     4381 attggagctt gaatacggat tgattttgcc attaaagcca tagttaaatc atcttgtaaa
     4441 tttaaaatac gacttacttt cacatctgca ctaggacgaa attcaaaagt agttaccaca
     4501 ggaccaacat aagtgcttat aacatcgccg cctattttaa aacgacgcaa tttttcaaga
     4561 agattataaa tttttttatc tatttcactt tcattgattt cttgtttgtg ttcttttgga
     4621 ttagctaaaa aatctaatgg cggcaaggtg aaatcttttg gtttttctat ttcgccctgc
     4681 tctatttcac gcaataaagc ttggttaata gcaatttctt tggctaaaac tgctttttga
     4741 agtttaattt cttgatcatt tgttttttca ttatcgattt tagtttctgt attttggata
     4801 aaatcgagtg tatttttttc ttctataact atttcattta tattttttat aggagtaggt
     4861 tctatataag gatgatttaa ctcttctaca atgggagcaa attcaaagat attgtctgct
     4921 ttatctagat ttttattttc atttattttg tctgattctt ctgtttctgt tttaattgtt
     4981 tttgggctat taaaactata tttattccct tctataatat cgcttgaatt tatcgcatca
     5041 tattcttcta attttttaat ttcttgtttt actttatttt ctaaaatttc attttgatag
     5101 gctttgtatt cttgttctag tttttctttt tttatcaaat tctctctaag ttcaagctct
     5161 tttgtaaaaa tttttggttt aacttcttga ttagaaactg gaatttcaat atttttacgt
     5221 ttataacttg gctcatctaa atttttattt gtatctattt gctttatatc ttcaagtttt
     5281 ttaggtttta aaaaacgttc aggaatcata tctacctctt cttctgaaat aaaattaaaa
     5341 tcttcatcaa gactaatgct cattttacta gccttttgtg cgaaatttcg cacttgttga
     5401 gaatgctcat gaacaaaact tcttgattct tttaaacttt gtttatcaat ctctatggtt
     5461 tcatctaaaa tttgattttt tagtttttca aaattttcct tggccgtggt aattgaattt
     5521 ttacttgcat tgatattgct atctttaatt atctgttcta agttattggt ttcccctttt
     5581 ttgtttattt gtaaatttcc ataaatacta tcttgcaaaa tatttaattt tggaactata
     5641 ggttctgatt tacctacatc ttctttctcg ttttctccac caaatacacg cataagtaaa
     5701 gatttaaaag cttgctctac ttttaataaa taagtaaaat ctaattctat ttttaaaatt
     5761 tcttttgcaa attttggaaa caataaaacc aaagaaaata gtagaagtaa aagagcgaaa
     5821 attccgctcc cagtatgccc caaaatagta gaaaaaatcg cataagcaag ctctagtata
     5881 tagcctgaat taggataaaa aactgcaaat aaaagcaaac tcgagaaaaa ggcaaatcct
     5941 ataccaaaaa gctctcttct tgtaaaatta gctaatttgt aatttctttt ataataaaca
     6001 taatttaaaa taaataagaa aaaaggataa taatacgcaa attctccaaa taaaaataaa
     6061 ttagccttgt aaacccattc tcccatgcca ggtgctagca tacaaagaca aagataaaaa
     6121 ataacaagcg tggagctggt aaaaatggct tcttttttaa tattctttcc ttgaaaataa
     6181 aatcaaagcc aaattatacc ataaaaaatt ttacatataa tttaataagc taagttgaga
     6241 aattattgta ctagctttaa gagaagcttg atatgcaagt tgaacttgca ttaaatttat
     6301 cattgcctca ccataatcta catcaatcac atttgatttt atactttgga cattaacgct
     6361 taaaaaggat gtgcgtgtat taacaccttc gatagtatta tgatatgctc ccatagttgt
     6421 attaagcttg ctaacatgat ctgctaaatg atcaagtctt tctaaagctc cttgcatacc
     6481 tgtatttcta gggttttcac tttcggagtc tgctctcata ttgcctttta aaacagcatc
     6541 aatcattgaa tctaaatctt taataatatc cacatttggc tcatctatag ttaaagaatt
     6601 attcgcgcta aaactaaaat ttggaccatt ttgtacagta gaagttgtgg taaaaggagg
     6661 tgctggaaat tggccacttt gagaatcact aagagaaatt tctatattgg ttcctgatga
     6721 aagtttatca gtaacactaa tacgaccttt ataatccata cttacatcaa cagtagcttg
     6781 tgaatctttc atgagttgtt gtatttgggt ataatctgca ttattaattt gaccattatt
     6841 ggcttgtatg gttgttgtag gaattttatc tgcagcaaac atacctataa tatcattaat
     6901 ttgaccataa gtaatatcat ttgatcctgt aacaacccca ctatttccag ttgcaggatt
     6961 agtatgcata ataggaaagc ttatggtttg acctggatta ttaggatcag gatagcttac
     7021 agttgaagtt tgtaaattta tagtaacatc gtaagaattt ccacctttgg aattgacttt
     7081 taaatttaaa gtagtaccat ttaggctatc tcctgccatt acctcgctaa gtttggttga
     7141 atcagtggca taagcattgc ttcctttgat aacttgagaa acattaccat aaacagtatt
     7201 gccatttttt tcaaaataca cattatcgta atcagctcca ttagcagcat ttccatctgt
     7261 atctgtcatt ttacttttga taaaatcagt ttgttttaaa tcaatttcaa agttttgtcc
     7321 gttaatttga atggttacag gattatttaa atttgtaata tctccattat tgggatttcc
     7381 tagtgcagca gtcataaccc tgtttgtaac atcttccatt gtaatgcctt catcctgtgc
     7441 tgcttggata atattattta attcagtttt atcatcagct tgtggtgtga aagctacagc
     7501 atgaaaatcg agtttattat taccttgctt tagatctgta atttgaattt gaccactatc
     7561 attcatactt acttctacta ctttattatt tggagtatta ccataaagag ctccaatatt
     7621 ttccattaca tcttctaaag tatcttcggg tttgacgagt acagcacttt taaaacttgt
     7681 tccatcggat cttgtacctt gaacataaag agttgttgga ggaaaatcta gtttgctatc
     7741 atcatactca aagtctttgt cagcatctaa gctattatct tttacataac tttgtccgat
     7801 aagttgttgc catttagaat ctcctgtgag atatttagtt ttatcagggt ctttatttaa
     7861 atcccaacga ttatctgtaa aactaacatt agtgcttatt tgttttttat agtctccatc
     7921 tgctttaaaa aataaatccc aacctggtat attgtatggg ctttcagttc cagctccagt
     7981 tactacatta atattatttt tatctccata ataatttcca ttagaatcaa aaggtttgtt
     8041 tgcaacttga gaacccgcaa aaagatactg accattaaca ctggtatttg caagctgaac
     8101 tatgctttct tttatacgtt ctagttcttt tgctatagct tctcttgagg tttgagaatt
     8161 gctatcgctt gcagcttggg ttactttaac tttaaaatct tcaagaagtt taaccatatc
     8221 ttgtaaagct ttcatactat tttgagtcat ttcttgagct ctacttgttg attcttttac
     8281 ttgttctaac gttttaattt catattcaag acgcgtatta tctatataag tgcttgcatc
     8341 ttcatatgaa ttttgtattt tcaaacctga agcaagttgt tgagatatct gatataaagc
     8401 actttgaccg cccatagaat tattcacact atttgtgaag ttaagtttat ttgtaattct
     8461 catttttttc ctctaaagta ttaaagttaa aatcttttca aacattgcta ataaacaaaa
     8521 gcaataactg ttccaaaaat ttaaattata taattttata ttgtcttttt gaaaatactt
     8581 tttattttta aagtattttt tagcctaaaa aagtataatt ttagctttaa atcttaaaaa
     8641 tgagcccgag tggtgaaact ggtagacgcg ccagactcaa aatctggtaa gggcaacctt
     8701 gtgtcggttc gagtccgacc tcgggcacca cttatttttt gcgggaatag ctcaggggta
     8761 gagcacaacc ttgccaaggt tggggtcgcg agttcgaatc tcgtttcccg ctccatagag
     8821 taaaaaaaat ataaaatctc tttaattata aattctcgct tttctctaat actaaaaaat
     8881 actcattttc tagaatttca agttcttttt gcattacttc aagctcttga taaagcttgt
     8941 taatacctat ttcttgatat acatttggat cggataaatc ttgatttaat ttagctatct
     9001 tttgctctaa aaaatctatt ttttcaggat ggttttttaa tatctcattt tctttgtagc
     9061 tcaatttttt ggagcttttt tctttttggt tattattttg ctcttgggtt tgaagctcta
     9121 aagcaaaatt atccaattct tcaatttctt tttcattttc aagatattca gtataaagag
     9181 tgtgtaaaat atttatatat ccatttccct caaaagcata aagttttgtt gcgattttat
     9241 caacaaaata tctatcgtgt gatactagca aaatagcccc ttcaaaacta agtaagtatt
     9301 cttctaatat attaatcgta gctatatcaa gatcattagt tggctcatct aaaatcaaaa
     9361 catcatattc tttagcaaaa agcaaggcta aagcaacgcg atttttctct ccgccgctta
     9421 aaagagccac gcttttatct aaaaattcct taggaaatag aaaatttttc aaatatccat
     9481 aaacatgcat atttttacca cgaacttcaa ccctatctcc accattggga caaaaaattt
     9541 caagcaagct tttatcagaa tttaccaagc ttctagcctg atcaaaatat cctatcttaa
     9601 gctctccgcg ttttatttca ccgctatctt gttttatttg ccctagaaga atttttaaca
     9661 atgttgattt tccacaacca tttcttccta cgatagctat gcgttcacct tgtaaaatac
     9721 gcgttgaaaa atctttaaaa agatttttat tgtttatatt tttgcttata tttttaagct
     9781 caaaaagcat ttttttacga ttgatcgttt tttctccatt aaaatttaaa gccgctcttg
     9841 aaatttcaag ttttaagcgt ttgattgccc caggattttt tttcgcttct tcacgcattt
     9901 taaaaatgcg ttcttttcgt ccttcatttc ttttaagtct tgctttaacc cctcttctaa
     9961 gccattcttc ttcgcttttt aattgcttta aaagagtttc atggctctta gcaaggcttt
    10021 gcaaaatttg tgtttttttc tctaaatagt ttgcatatcc gcctttaaaa atactaagct
    10081 taccctgctc tacttctaca cacttgtgtg ctatagcgtc aataaaatat ctatcatggg
    10141 aaataaaaat cacacacatc tttgaatttt ttagcaattc ttccaaaaag cttgtcatat
    10201 atacatctaa atgattagtt ggttcatcaa gcaataaaat atcaggattt tttagtaaaa
    10261 gtatgcaaag cccaacgcgg cgtatttctc caccacttaa agtagatata atgcgatttt
    10321 catactcaag taaactaaat tcttttaaaa cgcgtattat tttagattct atactccaag
    10381 catctttact atcaatcaaa gtcataagcg tatctatttt ttgaagataa tctttattac
    10441 taggatcttc ttctaatttt ttatgcagta tttcatattc ttctaaggta ttgtaaattt
    10501 ctacaagctc ttgcttgatg gcttctttta cgcttaaatt tgcattaaaa tcaacggttt
    10561 gtgaaagcat ggctatgctt tttccatttt gtcttattat tctaccgcta tctaaaggaa
    10621 gtgtgcctaa aagcgttttt aaaaaagtag attttccttc tccatttttg cctataatag
    10681 caatcttttc tccctcgttt gcgctaaaat ttacttcatt taaaactatt ttgtctccaa
    10741 atttttttga agcttcaatt aaatctataa gagccatttt ttatccttga ctgagtttaa
    10801 agctaaaact agaaccataa cctaaagtgc tagaaatttc aagataactt ttatgtatat
    10861 ttaaaatttt ctttactaaa aaaagtccca aaccaaaaga attatcactt tttacatcaa
    10921 ttttataaaa tttttttgta atcaatttta ttttatcttc ttctatgcct tttccaaaat
    10981 cttgcactat tatcttttga tctcttgccg ttaaaatgac ttttttttga ctatatttta
    11041 aagcattaga aagcaaattt ataatcactt gctcgattaa aaattcatca gccttaactt
    11101 tcgtgctttt accttgcaat gcaactcttt caaagcctgg gtttttagtg attttttcac
    11161 atagagaaaa aagatcgaat tcttgcatct gcaaggcttc actattaaga ttaaaaacaa
    11221 aattaagctt atgggttaaa gcattaagtt taacgctttg acgtgaaatt ttttctagta
    11281 attccttttt taatttttta tcttccaatt tctcatcttt tagcatctct aagctaagat
    11341 caatcacgct taatggattt ttaagctcat gagaaatagc agaaatcacg ctagcaagct
    11401 gagtattttt taaagtgatt ttatcgcttt gttttttatt tttttgggta ttctttagaa
    11461 ttttatcctt agtttttaaa agtttctcat ttagtaaatt aaattcttta aagattcctt
    11521 tttctaatat aac
//
LOCUS       DAPIWJ010000052        11529 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.052, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000052 DAPIWJ010000000
VERSION     DAPIWJ010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11529)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11529)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11529
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.052"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            68..1060
                     /locus_tag="RJ259_001124"
     CDS             68..1060
                     /locus_tag="RJ259_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopenicillin N synthase family oxygenase"
                     /protein_id="HDV7366828.1"
                     /translation="MNLPILDLQAYEKDKSTFLKNLREIASKIGFFYLINTSIDKNLN
                     EKLFKLGKEFFNLSRSSKELISMVHSPQFRGYTSEGFEYTAGSKDYREQLDIGTERDA
                     LNWNLNSPLWQRLEGPNLWPSEIPELKKTFLTWHKQTKKACLKLLKAFAQALDLPNNA
                     FDKLYGENSYEHCKIIHYPKSSKNITQGVGSHKDGGLITFVFQEKQSGFEAFIDGKWL
                     SIPPLENSVVVNIGEFLELATNGYLKATIHRVNLSPKERFSIAYFLGVQLDKDIPIFK
                     LNPELAKESKGVDTDPKNPLLRNVASNYFKRMIRSHPDVASIYHSDLIEKFSFA"
     gene            1071..1841
                     /locus_tag="RJ259_001125"
     CDS             1071..1841
                     /locus_tag="RJ259_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDV7366829.1"
                     /translation="MTLFTKAFCVATLFTGFAWANEELKVGSSITPHADILRFIKSAL
                     QKQGYDLKIYEFNDGVIPNVMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIHIE
                     PMAVYSKKHKEFHPKEGQSISIPNNPTNESRALRIVASKGLIEVKDNELITPLDITKN
                     PKKLKFVELKDAQLTRSLDDVDYSLINSNFAILAGLNPVKDGLYTESKYSEYGNIIAV
                     KEGNENLPKIKALVKALQSNEVKKFIEEKYQGALIPTF"
     gene            1853..4117
                     /gene="metE"
                     /locus_tag="RJ259_001126"
     CDS             1853..4117
                     /gene="metE"
                     /locus_tag="RJ259_001126"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HDV7366830.1"
                     /translation="MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIR
                     HWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYKNLNLDALDEYFAQSRGYQG
                     ENGDVTALAMKKWFNTNYHYLVPECDNADIIALTGDKIFKEYLEAKELGIESKPVLIG
                     IFTLFKLIAFKDEKTQKLAKEKLLNAYIELFDKLNELKVTWLELDEPYLVYDLSKEDI
                     ALFEEFYQELLNHKKDLKILLQSYFGDLRDIYPKLLESKFDALGLDFIEGKQSLALVQ
                     QYGFAKDKILFAGLINGKNIYANDYAKSLKLIKELQKYTQNIILNTSCSLLHVPYSTE
                     FESKLDSSYLKLFAFAKEKLQELKDLKEILNSSEENPLFRANQELFKNIPERLDEKVK
                     ARLKALKKEDFTRTPSFKERALIQKEFLKLPLLPTTTIGSFPQSADVRSNRLAFKQEK
                     ISAQNYTEFNQQKIKECIQIQEEIGLDVLVHGEFERNDMVEYFGENLKGFLFTQNGWV
                     QSYGTRCVKPPVIWGDVSRTKPITLAWSKFAQSLSQKIVKGMLTGPVTILNWSFPRED
                     ISLKESTEQIALAIRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPA
                     FNLVHSGVKAKTQIHTHMCYSEFSDILKEIDAMDADVISFEASRSNLSLLDTLKAIRF
                     KTEVGPGVYDIHSPRVPSVEELSLTIEKILNKLPKEQIWINPDCGLKTRAYEEVITSL
                     KNLVTATQKIREQL"
     gene            4127..4975
                     /gene="metF"
                     /locus_tag="RJ259_001127"
     CDS             4127..4975
                     /gene="metF"
                     /locus_tag="RJ259_001127"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HDV7366831.1"
                     /translation="MCSFSFEVFPPRKDENIKNLHAILDDLGQLSPNFISVTFGAGGS
                     INSQNTLEVASLIQEEYQIPSIVHLPCIHSSKEKITQILQKCKEKNLNQILALRGDIC
                     ENLKKSKDFSYASDLISFIKKQEYFEIYAACYPEKHNESKNFIEDIHHLKTKVNAGTD
                     KLITQLFYDNEDFYTFKQNCALADIDIPIYAGIMPITNKRQVLKISQLCGAKIPPKFV
                     KILEKYENNTLALEDAGIAYACDQIVDLITSGVDGIHLYTMNKSKAAIKIYEAVKHLL
                     KEELHA"
     gene            complement(4997..5188)
                     /locus_tag="RJ259_001128"
     CDS             complement(4997..5188)
                     /locus_tag="RJ259_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366832.1"
                     /translation="MIYILEFFKGASLALMLFGALFFFFKYNSFFYLCLGIIPGLLLS
                     LIFVLLIENHKLKNENKLR"
     gene            complement(5185..5865)
                     /locus_tag="RJ259_001129"
     CDS             complement(5185..5865)
                     /locus_tag="RJ259_001129"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HDV7366833.1"
                     /translation="MKDLFLFSSLLDASHTFSYFFHIGLVALIAVIVAMMATRSMQLV
                     PRGMQNLGEAFLEGVLSMGRDTMGSEKGARKYLPLVATLGIIVFFSNIIGIIPGFHAP
                     TASLNLTLSLAIIVFVYYHFEGIRAQGFVKYFAHFMGPIKLLAPLMFPIEIVSHLSRV
                     VSLSFRLFGNIKGDDLFLMVILALVPYIAPLPAYVLLTFMAFLQAFIFMILTYVYLAG
                     ATVVEEGH"
     gene            complement(5934..7274)
                     /gene="radA"
                     /locus_tag="RJ259_001130"
     CDS             complement(5934..7274)
                     /gene="radA"
                     /locus_tag="RJ259_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HDV7366834.1"
                     /translation="MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVL
                     KELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDLVLGGGLVEGSLVLIGGSPGVGK
                     STLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
                     LHKKDYSILIVDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITK
                     EGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAK
                     DLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLL
                     ALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGEL
                     SLNGEIREVFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM"
     gene            complement(7274..8140)
                     /gene="ftsY"
                     /locus_tag="RJ259_001131"
     CDS             complement(7274..8140)
                     /gene="ftsY"
                     /locus_tag="RJ259_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HDV7366835.1"
                     /translation="MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEI
                     VEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQEKPFVELILGVNGAGKTTSIAK
                     LAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
                     AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGI
                     LQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNAS
                     AYLDTLLDPIFE"
     gene            complement(8140..8697)
                     /locus_tag="RJ259_001132"
     CDS             complement(8140..8697)
                     /locus_tag="RJ259_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HDV7366836.1"
                     /translation="MKIKKILLLVAISCLFVACSNDKEKQQNDVNLSTEASINQSDDM
                     NFKLNLIDGGSISVKKENAVLNFNDEDKVTLFVFFTTWCTPCIAEIPHLNKLQEKYNN
                     DFNIVGVLLEDKSNDEIQKFIEQHKISYKVANGENNYLLAKALGGVNGIPTMFLYNKH
                     SKLINQYLGLIPEEMLEIDIQKAIL"
     gene            8780..9406
                     /locus_tag="RJ259_001133"
     CDS             8780..9406
                     /locus_tag="RJ259_001133"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HDV7366837.1"
                     /translation="MEKTDFRALQKIRLFKHSKLNFKQDYKIFKECLKIIKLFKAKNI
                     LIFIPLHYEPNLIKFRHILNKNYKLFVPFMQDKSLKIVKLRLPFIKKRFGVLEPIDSF
                     FKAKIDLAIVPVIGVDKNLKRIGHGQGFYDRFFENLNYKPHIIFIQSIDALSQNNLTQ
                     KHDISGKLYINPYKKYYKKERKNDRITYRTYSRYSRTRYRIFSCKKNQ"
     gene            9327..10880
                     /gene="rny"
                     /locus_tag="RJ259_001134"
     CDS             9327..10880
                     /gene="rny"
                     /locus_tag="RJ259_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HDV7366838.1"
                     /translation="MIESLIALIAAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAI
                     EYEAELILKDAKNSILNAELEVKKKYEEKTHKFQKDFNQKFDDLSKKEQKLQQEEEKL
                     KEDKEYLCKSQKHIQNLQSDVDKLKNKYQEKLDDVLKILEHSTGLTQNEAKEIILKKV
                     EENSREQIAHIVRKYEEEAKNEAKRKANFIIAQATSRFAGEFAAERLINVINIKNDEL
                     KGRIIGKEGRNVKTLEMVLGVDIIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRI
                     QPARIEEIHEKVCKEFDSAILEEGETIVMDLGLNKIHPEIVKLIGKLKYRASYGQNAL
                     AHSLEVAHLAGIIAAECGGDENLARRAGILHDIGKALTHDFEGSHVDLGAELCKRYKE
                     HPVVINAIYAHHGHEEATSIESAAVCAADTLSAARPGARREVLEAFLKRVSELEDIAK
                     SKEGIKNAYAINAGREIRVIANAQLVNDDESVLLAKEIAAEIQEKMQYPGEIKVNVIR
                     ELRAVEYAK"
     gene            10889..11446
                     /locus_tag="RJ259_001135"
     CDS             10889..11446
                     /locus_tag="RJ259_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDV7366839.1"
                     /translation="MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSF
                     CIALAFIANTIGSTLLFILGKYYKKDIMPYFKKHRRKIALAMIKTKQHGIILLVTQKF
                     IYGLKTFIPIAAGMAKYNFIKFFIINTLASLAWAIVLGFTAYTFGYVIEAIFDKLSLY
                     PYAAPLFLLFLAGIIWLYLSKFSKK"
BASE COUNT         4237 a         1904 c         1735 g         3653 t
ORIGIN      
        1 aaatttctct aataaaattt taattcaaaa tatcttctta tccttaattt taatttaagg
       61 agcaaaaatg aacttaccta tacttgattt acaagcttat gaaaaagata aaagcacttt
      121 tcttaaaaat ttaagagaaa ttgcttctaa aataggtttt ttttatctta tcaataccag
      181 tatagataaa aatttaaacg agaaattatt caaacttggc aaagaatttt ttaatctttc
      241 tagaagttcg aaagagctta tttctatggt acattctcct caatttagag gttatactag
      301 cgaaggtttt gaatacacag caggatctaa ggattataga gaacaactgg atataggcac
      361 agaaagagat gctttaaact ggaatttaaa ctcaccctta tggcaaagac tagaaggtcc
      421 taatctttgg cctagtgaaa ttccagaact taaaaaaact ttcttaactt ggcacaaaca
      481 aaccaaaaaa gcttgtttaa agcttttaaa agccttcgct caagctcttg atctacctaa
      541 caatgctttt gataaacttt atggagaaaa ttcttacgaa cattgtaaaa tcatacatta
      601 tccaaaaagc tcaaaaaata tcactcaagg cgtaggttca cataaagatg gtgggcttat
      661 cacttttgtt tttcaagaaa aacaaagcgg atttgaagct tttatagatg gtaaatggct
      721 tagtataccc ccacttgaaa atagcgttgt agttaatata ggagaatttt tagaactagc
      781 taccaatggc tatttaaaag ctactattca ccgcgtgaat ttaagcccaa aagaacgctt
      841 tagcatagct tattttcttg gagtgcagct tgataaggat atacctattt ttaagttaaa
      901 tccagagctt gctaaagaaa gtaaaggtgt ggatactgat cctaaaaatc cacttttaag
      961 aaatgttgca agtaattatt ttaaaagaat gatacgctct catcctgatg tggcaagtat
     1021 ttatcatagt gacttgatag aaaaatttag ttttgcgtaa aggagaaaaa atgactttat
     1081 ttactaaagc tttttgcgtc gctactcttt ttaccggttt tgcatgggca aatgaagaac
     1141 ttaaagttgg ctcttctata acacctcatg cagatatttt aagatttata aaatcagcac
     1201 ttcaaaaaca aggttatgat ttaaaaattt atgaattcaa tgatggagta atccctaatg
     1261 taatggttga aaatggtgag ttagatgcta attattttca gcatgagcct tatttaaaag
     1321 aattcaatca aagacaaggc acccatcttg taaaagttgc cagtatccat atagaaccta
     1381 tggcagtgta ttctaaaaaa cacaaagaat ttcaccccaa ggaaggacaa agcatttcta
     1441 tacccaataa tcctacaaat gaaagccgtg ctttacgcat tgtagcaagc aaaggactta
     1501 tagaagttaa ggataatgag ctcatcactc ctttagatat cactaaaaat cctaagaagc
     1561 ttaaatttgt agagttaaaa gacgctcaac ttacaaggag tttagatgat gtagattatt
     1621 ctcttattaa tagcaatttt gctattttag caggtttaaa ccctgtaaaa gatgggcttt
     1681 atacagaaag taaatatagt gaatatggca atatcatcgc cgttaaagaa ggtaatgaaa
     1741 accttcctaa aatcaaagcc ctagtaaagg ccttgcaaag caatgaagtt aaaaaattta
     1801 tagaagaaaa atatcagggt gctttaatcc ctacatttta aggagaacaa atatgaaaaa
     1861 ttcaatcatt tcttacccaa gaataggtgc aaatagagaa ttaaaatttg ctattgaaaa
     1921 atactttaaa aaccaaagtt ctaaagagga gcttttaaag agtgctaagg atttaaggat
     1981 tagacactgg caagaaattc aaaaagctgg cattgatttt atccctagta atgatttttc
     2041 actttatgat aatgtcttag atgcagctgt gctttttaac attgttcata caaagtataa
     2101 aaatttaaat ttagatgctt tagatgaata ctttgctcaa agtcgaggtt atcaaggaga
     2161 aaatggagat gttacagcct tagcaatgaa aaaatggttc aatacaaatt atcattattt
     2221 ggtgcctgag tgcgataatg ctgatattat agctttaaca ggggataaaa tttttaaaga
     2281 atatctcgaa gctaaagagc ttggcataga aagcaagcct gttttaatag gcattttcac
     2341 actttttaaa ctcattgcct ttaaagatga aaaaactcaa aaactcgcca aagaaaagct
     2401 tttaaacgct tacatagagc tttttgataa actaaatgaa cttaaagtaa catggcttga
     2461 acttgatgag ccttatttgg tttatgattt aagcaaggaa gatatcgctt tgttcgaaga
     2521 attttaccaa gaacttttaa atcacaaaaa agatcttaaa attttacttc aaagctattt
     2581 tggagactta agagatattt atcctaaact tttagaaagc aaatttgatg ctttggggct
     2641 tgattttatc gagggaaaac aaagcttagc cttagtccaa caatacggtt ttgctaaaga
     2701 taaaatcctt tttgcaggtc ttattaacgg caaaaatatc tatgctaatg attatgctaa
     2761 aagcctaaag cttattaaag agcttcaaaa atatacacaa aatatcatct taaacacttc
     2821 ttgctcactt ttacatgtgc cttatagcac tgaatttgaa agcaaattag attcaagcta
     2881 tcttaaactt tttgcctttg ctaaagaaaa acttcaagaa cttaaagatt taaaagaaat
     2941 tctaaattct agcgaagaaa atccgctctt tagagccaat caagagcttt ttaaaaatat
     3001 cccagagcgt ttagatgaaa aagtcaaagc aaggcttaag gccttaaaaa aagaagattt
     3061 taccagaacg cctagtttta aagaacgcgc cttaatccaa aaagaatttt taaaactccc
     3121 tcttttacca accacaacca taggttcctt tcctcaaagt gccgatgtaa gatctaatcg
     3181 ccttgccttt aagcaagaaa aaatttcagc tcaaaactac actgaattta accaacaaaa
     3241 aatcaaagaa tgcatacaaa ttcaagaaga aataggactt gatgttttag tgcatggaga
     3301 atttgaaaga aatgatatgg tggagtattt tggagagaat ctaaagggct ttttatttac
     3361 tcaaaatggt tgggtgcaaa gctatggcac aaggtgcgtt aaacctcctg tgatttgggg
     3421 tgatgtatca cgcacaaagc ctatcacctt agcttggtct aaatttgcac aaagtttaag
     3481 tcaaaaaatc gtaaaaggta tgctaactgg acctgtaacc atacttaatt ggtcctttcc
     3541 aagagaagac atcagtctaa aagaaagcac tgagcaaatt gccttagcta taagagatga
     3601 agtgttagat cttgaaaatg caggtataaa aatcatacaa attgatgaag cggctttgcg
     3661 tgaaaaactg cctttaagaa aaagtgattg gcatagtgag tatttagatt gggctattcc
     3721 tgcttttaat cttgtgcata gcggggtaaa agctaaaact caaattcaca ctcatatgtg
     3781 ttatagtgaa tttagtgata tcttaaaaga aattgacgct atggatgctg atgtgatttc
     3841 ttttgaagct tcaagatcaa acttaagtct tttagatacc ctaaaagcta ttcgttttaa
     3901 aactgaggtg ggaccaggag tttatgatat acatagccct agagttccaa gcgtagaaga
     3961 attaagttta actatagaaa aaattttaaa caaattacct aaggagcaaa tttggatcaa
     4021 tccagactgc ggacttaaaa caagagccta tgaagaagtt ataacctctc ttaaaaattt
     4081 agttacggct acgcaaaaaa tacgagaaca attataagga gttttcatgt gtagtttttc
     4141 ttttgaagtt tttccaccaa gaaaggatga aaatatcaaa aatcttcatg ctatcttaga
     4201 tgatttaggg caattaagcc ctaattttat cagcgtaacc tttggagctg gaggctctat
     4261 taactcacaa aatactttag aagttgcaag cttaatccag gaagaatatc aaattcctag
     4321 catagtacat ttaccttgca tccattctag taaagaaaaa atcactcaga tacttcaaaa
     4381 atgcaaagaa aaaaatctta atcaaattct tgccctaaga ggcgatatat gtgaaaattt
     4441 aaaaaaaagc aaagattttt cttatgctag tgatttaatt tcttttataa aaaaacaaga
     4501 atactttgaa atttatgccg catgctatcc cgaaaaacat aatgaatcta aaaatttcat
     4561 cgaggatata caccatctta aaactaaggt aaatgcagga acagataagc tcattactca
     4621 acttttttac gataatgaag atttttatac ttttaaacaa aattgtgctt tagcagatat
     4681 tgacatacct atttacgcag gtattatgcc tattactaac aaaagacagg ttttaaaaat
     4741 ttctcaactt tgcggagcta aaatccctcc taaatttgtt aaaattttag aaaaatatga
     4801 aaataatact ttggctttag aagatgcagg tatcgcgtat gcttgcgatc aaattgtcga
     4861 tttaatcaca agtggtgtag atggaattca tctttatact atgaataaat ccaaagcggc
     4921 tattaaaatt tatgaagctg taaagcattt gcttaaagaa gagcttcatg cttagaaaat
     4981 aaactatttt ttgcttttat cttaacttat tttcattttt tagcttatgg ttttctataa
     5041 gtaaaacaaa aattaaagat aaaagcaaac ctggtataat acccaagcaa agatagaaaa
     5101 aagaattata tttaaaaaag aagaaaagtg caccaaaaag cattaaagct aaagatgcac
     5161 ctttgaaaaa ttctaaaata tagatcaatg accttcctca acaacagttg cacccgctaa
     5221 atatacataa gttaaaatca taaaaataaa agcttgtaaa aatgccataa aagttaaaag
     5281 cacataagca ggaagtggag ctatataagg aactaaagct aaaattacca ttaaaaataa
     5341 atcgtcgcct ttaatatttc caaacaaacg gaaggacaaa gaaaccacac gagaaagatg
     5401 agagactatc tctataggaa acatcaaagg agctaaaagt ttaataggtc ccatgaaatg
     5461 agcaaaatac tttacaaaac cttgtgccct aataccctca aaatgataat atacaaaaac
     5521 tataatagcc aaggacaaag tcaaatttaa acttgcagtt ggagcgtgaa aaccaggtat
     5581 tatacctata atattactaa aaaacactat aatccccaaa gttgcaacca aaggaagata
     5641 ttttcttgca cctttttcac ttcccatggt atctctaccc atagataaaa ctccctctaa
     5701 aaaagcctca cctaaatttt gcataccgcg tggaacaagt tgcatagaac gagtagccat
     5761 catagccact ataacagcaa ttaaagctac caaacctatg tgaaaaaaat aagaaaaagt
     5821 atgacttgca tcaagcaaag agctaaataa aaataaatct ttcatggttt cctcaaaaat
     5881 tttattctaa actcgaaatt ttagcaaaat cttacttata ttttaatgaa aatttacatc
     5941 cattctaaaa cttgcgaaag ttctttagca acaaaacact taagccctat atcttccaaa
     6001 ggcttagaag gaacaatggc atttttaaat ttttgcattt tagcttcttt taaacgcgta
     6061 tcaaggctaa aaacctctct aatttctcca tttaaactaa gctcccctat aaaaatacta
     6121 tctttgctca aagggcgatt tttaaaactt gaaataatag ctgcaaccac agccaaatcc
     6181 gccgcagttt cgcttacttt tactccgcca ctaatattta caaatacatc ataatgcccc
     6241 aaaggaattt caagctttct ttcaagcaaa gccaaaagca tatctaagcg atttttttca
     6301 tagcccgtag cgctgcgttt tggataagaa ctttcacaca ccaaagcttg aacttctaaa
     6361 accaaagcac gagatccctc cattacaaca cctaaagcac ttcctgaaat agcctttcca
     6421 cgagtaaaaa aacgatttgc caaatctttt gcactgatca aacccttagc agtcatctca
     6481 aaaataccta cttcattcgt tccaccaaaa cgatttttaa agcctcttaa aagtctgatt
     6541 tctttagtgg catctccctc aaaataaagc accacatcta ccatatgctc aagaactcta
     6601 ggtcctgcta tagcaccttc tttagtaatg tgccctatga taaaagtact gatattataa
     6661 gccttactca cacgcataag ctcaaaagta atctcacgca cctgagtgat gcttcctgct
     6721 gctgaagtga ttttatttga atatagagtt tgtatagaat caacgataag aatgctataa
     6781 tcttttttgt gcaattcttc taaaatattt tcaaggcaaa gttcagtaag taaaaataaa
     6841 ttcggagtat tagcctcaag acgatcagct cttaatttaa tctgggcttt actttcttcg
     6901 ccactgacat aaagcacttt tttaccctgt ttagctaaat ttgaagcaat ttttaacaaa
     6961 agcgtagatt ttcccacacc tggacttccg cctataagca ctaaagaacc ttcaacaagc
     7021 cctccgccta aaaccaaatc aagctcatta tcatctgtgc tgtatcttgt aaaatgctct
     7081 aactccacat cttcaataca aacagcctca cttgttttca tgctaacttg cgcaagctct
     7141 tttaaaactt taatttgctc agcttttaat tctacaaaac tatcccaagc tccacaatca
     7201 ggacattttc caagccattt gctttgttga tttccacaag cttgacattc aaaaagtgct
     7261 ttattttttg ccattattca aaaataggat ctaataaagt atctaaataa gcacttgcat
     7321 taaattcttg taaatccgtc atttgctcac ccacgcctac ataaaaaata ggaagctcaa
     7381 gctctcttgc tatactaaaa agtgcacccc ctttagctgt cccatcaagc tttgtgataa
     7441 tcacaccatc aagttttaca agctcattaa aagctttagc ttgtaaaatt ccagcatttc
     7501 cctgtgttcc atctaaaact aaaatttttc tatggggtgc gccttctaaa gctttgtttg
     7561 aaattcttac aattttttca agctcatgag ctaaattttt ttgattttgc aaacgccctg
     7621 ctgtatcgat aataactcta tcaaaatcct ttgcttttgc tttagaaatg gtatcaaaag
     7681 caaccgctga aggatcatgc ccttgtgcag ttaaaactat atctacatcc actttttgcg
     7741 cccaaagttt taattgctca atcgcacctg ctctaaaagt atcacacgct cctaaaatca
     7801 ctttttgatt ttggtttttg tataaataag caagcttggc aatacttgtt gtttttcctg
     7861 ctccatttac tcctaaaata agctctacaa aaggtttttc ttgattggtt tctttttttt
     7921 cataaagaaa ataagaaccc ataacacgct ttaaatcttc tttttttact tcattttgag
     7981 gtggtaaata ataaattatc tcttcaacta tttcataact tacatctgct tcaagcaaaa
     8041 tttcttcaag caaatctttg gttatctttt tattctctcc tttaactcca acaatatttt
     8101 caagagtttt tgcaagtcct tttttaaaaa aattaaacat taaagtatag ccttttgtat
     8161 atcaatttct agcatttctt caggaataag ccctaaatac tgattaatca atttagaatg
     8221 cttgttgtaa agaaacatgg taggaattcc atttacccca cctaaagctt tagctaaaag
     8281 atagttattt tcaccattag cgactttata agatatttta tgctgttcta taaatttttg
     8341 aatctcatcg ttagatttat cttctaataa aaccccaact atattaaaat cattattata
     8401 cttttcttgt aatttattaa gatgagggat ttcagcaatg caaggggtac accaagtggt
     8461 aaaaaataca aacaaagtta ccttatcttc atcgttgaaa tttaaaacgg cattttcttt
     8521 tttaactgaa attgatcctc catcaatcaa attaagttta aaattcatat catcactttg
     8581 atttatactt gcctcggtgc ttaaatttac atcattttgc tgcttttctt tatcattgct
     8641 acaagcaaca aacaaacaag atattgccac tagtaaaagt atttttttaa tcttcattat
     8701 ttatcaatcc tttattattc tttataaaaa tgctaaaatt ataacataca taagataata
     8761 tttttttaaa ggcatattaa tggaaaaaac agattttagg gcattgcaaa aaatacgcct
     8821 tttcaaacat tcaaaactaa atttcaaaca agattataaa atatttaaag aatgtcttaa
     8881 aataataaag ctatttaaag ctaaaaatat tttaattttt attcctttgc attatgaacc
     8941 aaacttaata aaatttcgcc atattcttaa taaaaattac aaactttttg ttccatttat
     9001 gcaagataaa agtttaaaaa ttgtaaaatt aagattgcct tttattaaaa aaaggtttgg
     9061 ggttttagag cctatagatt ctttttttaa agcaaaaatt gatttagcta ttgtgcctgt
     9121 aattggcgtc gataaaaatt taaaaagaat aggacatggg caaggttttt atgatagatt
     9181 ttttgaaaat ttaaattaca aacctcatat aatatttatc caaagtatag atgctttaag
     9241 tcaaaataat ctaacacaaa agcatgatat ttcaggaaaa ttatacataa acccttataa
     9301 aaaatattac aagaaagaaa gaaaaaatga tagaatcact tatcgcactt atagccgcta
     9361 tagtcggact cggtatagga tatttagttg caaaaaaaat caatgatgcc aaatatgaaa
     9421 ttttcgtaga acaagccaaa gctaaagcca aagctataga atacgaagcg gagcttattt
     9481 taaaagatgc aaaaaattca attcttaatg cagaattaga agttaaaaaa aaatacgaag
     9541 aaaaaactca caaatttcaa aaagatttta atcaaaaatt tgatgatctt tctaaaaaag
     9601 aacaaaaact tcagcaagaa gaagaaaaac taaaagaaga taaagaatac ctttgcaagt
     9661 cacaaaaaca cattcaaaac ttacaatctg atgttgataa attaaaaaat aaatatcaag
     9721 aaaaacttga cgatgtttta aaaattttag aacattcgac aggacttaca caaaatgaag
     9781 ccaaagaaat cattcttaaa aaagtagaag aaaattctcg cgagcaaatt gcacatatag
     9841 taagaaaata tgaagaagaa gcaaaaaatg aagctaaaag aaaagctaat ttcatcattg
     9901 ctcaagctac ttctcgtttt gcaggtgaat ttgcagctga aagacttatc aatgttatta
     9961 acattaaaaa cgatgaactt aaaggacgta tcattggtaa agaagggcgc aatgttaaaa
    10021 ccttggaaat ggttttaggt gttgatatta tcatcgatga tacaccaggt gctattatag
    10081 taagttgttt taatctttat cgccgtgcta ttgctacaaa agttatagaa cttttagttg
    10141 aagatggcag aattcaaccc gcgcgcatag aagaaattca cgaaaaagtg tgtaaagaat
    10201 ttgatagtgc cattctagaa gaaggcgaaa ccatagttat ggatctaggt ttaaataaaa
    10261 tacaccctga aattgtaaaa ctcataggaa aactcaaata ccgagcaagc tatggacaaa
    10321 acgctttagc acattctttg gaagtggctc accttgcagg aatcattgct gctgagtgtg
    10381 gtggagatga gaatttagca cgtcgtgcgg gaattttaca tgatatagga aaagcattaa
    10441 cccatgattt tgaaggatct catgtggatt taggtgcaga actttgcaaa cgctacaaag
    10501 agcatcctgt agtaatcaat gctatttacg cacatcatgg acacgaagaa gctacaagca
    10561 tagaatcagc agctgtttgt gcagcagata ctttaagtgc tgcacgacct ggagctagaa
    10621 gagaagtgtt agaagctttc ttaaaaagag tcagtgagct agaagatatc gctaaaagta
    10681 aagaaggaat taaaaatgcc tatgcaatca atgccggaag agaaattcgc gtcatagcca
    10741 atgctcagct tgttaatgat gatgaaagtg tacttttagc taaggaaata gcagctgaaa
    10801 ttcaagaaaa aatgcaatat cctggtgaaa ttaaagtcaa tgttatacgt gaacttagag
    10861 ctgtagaata cgctaaataa ggtttattat gcaagatatg attgatactt taataaaata
    10921 tggttatatt gttttattct tttactcttt agggggcggg atggttggaa ttttagctgc
    10981 aggagtttta agttctcaag gaaaaatgga tcttagtttt tgcattgctc ttgcttttat
    11041 tgctaatacc ataggttcaa ctttgctttt tatacttgga aaatattata aaaaagacat
    11101 tatgccttat tttaaaaaac accgacgcaa gatagccctt gctatgataa aaacaaaaca
    11161 acatggaatt attttacttg taactcaaaa atttatttat ggtttaaaaa ctttcattcc
    11221 catagctgca ggtatggcaa aatataattt tattaaattt tttattatca atactctagc
    11281 tagtttggca tgggctattg ttctaggttt tactgcttat acttttgggt atgttattga
    11341 agcaattttt gataaactga gtttatatcc ttatgctgct cctttatttt tattattttt
    11401 agccggaata atttggcttt atttaagtaa attttccaaa aaataatgtc tctatggaat
    11461 tctttttctt actcttttaa agaatttcat tatttatttt tctctgttgt tgttattttt
    11521 atttttaat
//
LOCUS       DAPIWJ010000053        11478 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.053, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000053 DAPIWJ010000000
VERSION     DAPIWJ010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11478
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.053"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            68..823
                     /locus_tag="RJ259_001136"
     CDS             68..823
                     /locus_tag="RJ259_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HDV7366840.1"
                     /translation="MKKILSIALVALVGLFLGACSDSKNKESNASVELKVGTAPNYKP
                     FNYKENSKLTGFDTDLVEEIAKKNGIKIVWVETNFDGLIPALKAGKIDMIASAMSATD
                     ERRQSVDFTKPYYMSKNLYLKLKNNDSLQTKNDLEGKKIGVQLGTLQENTAKAIKNAQ
                     VQSNKDLNIAVLALKNNKIDAIVADQDTAKGFLAENPELVSFYQETDGGEGFSFAFDK
                     NKQKNIIEIFNKGIDEAKTDGFYDTLIKKYELE"
     gene            complement(847..1485)
                     /locus_tag="RJ259_001137"
     CDS             complement(847..1485)
                     /locus_tag="RJ259_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HDV7366841.1"
                     /translation="MKLVLFDLDDTLIQGDSAKLWLKFCVEKGFLPQEYLEKIVFYQK
                     QYQEKKFDMDEFMTFFLQSVKGKNEDRISSLVDEFIKIYIKPYEKAKELIIKYQDQRC
                     IIISATAEFLVRKIASFLGVRESIAIKCERVGDKFSGKAYGIYSFKEGKVLRLKEYLG
                     KDYEKWMKDSYFFSDSINDLPLLESVSKAFVCNGDEKILKIAKERKYEILTF"
     gene            complement(1482..2471)
                     /locus_tag="RJ259_001138"
     CDS             complement(1482..2471)
                     /locus_tag="RJ259_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7366842.1"
                     /translation="MAYLKIKNFKKAYGDKIIFEDINFSAKKGEFITLLGPSGCGKST
                     LLRCIAGLSQINGGKISLNDKDLTKLSPQKRNIGMVFQNYALFPNLNVFENVAFGLKI
                     KKMDKKDIEKRVKKMLKLVELEEYAKTYPHKLSGGQMQRVALARSLVIKPDLLLLDEP
                     LSALDAKIRKYLRVQIKEIQKELELTTIFVTHDQEEALELSDTIILMNEGKIIQNSNA
                     NNLYLLPESHFVASFIGNYNILSPKELDSLGLKHDFKKDIALRPETIEISNEGLEAKI
                     KEKSLLGNIIRYRVRVQEIEFKVDTLNFSTHSTYEAGDKIALKFNLSLAKELK"
     gene            complement(2475..3254)
                     /locus_tag="RJ259_001139"
     CDS             complement(2475..3254)
                     /locus_tag="RJ259_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7366843.1"
                     /translation="MNENLSLKAKIYHYAVLFLVFLFLALPLMATFLYSISTSWGVSV
                     LPDDLTLKWYQELFHDERFLLALWHSLLVCVGSILLSVILVFPLVFVLNYYFLKLKAF
                     VNILIIMPFAVPPIVSCVGLLQLYADNIGGTAWILIFTYFTIALPFIYRALDNAISNV
                     NLNELITSNAMLGGSLMGAIFKLILPNLRNGILVAVFLSFSFLIGEFLYANILVGSAY
                     ETLQVYLYNIKNQSGHYSSALVIVYFVLIFITTFIASLIKE"
     gene            complement(3255..4094)
                     /locus_tag="RJ259_001140"
     CDS             complement(3255..4094)
                     /locus_tag="RJ259_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7366844.1"
                     /translation="MKEKFLAFLSILPFFIVFTFFMIAPLIWIVFNAFYVEEDEIYSL
                     ANFIHIFESKFYLQSIINSLQISFISSIFGLLIGLLASYSLFILAPSKICNFLFSLNT
                     MISNFSGVPLAFAFIIVLGSNGVVNVFLKNLGIEPFVSVYANFGVNIVYVYFQIPLAI
                     LLLLPAFKSFENSHLNACKMLGGGNFLYWLKIALPLLAPALFGVFVILFANAFGAYAT
                     IYALSSGNFNVAPVRIAALIAGDINLDPYMASALSIIITIIMLVVTFIANFLSKKYNF
                     KVL"
     gene            complement(4091..4900)
                     /locus_tag="RJ259_001141"
     CDS             complement(4091..4900)
                     /locus_tag="RJ259_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HDV7366845.1"
                     /translation="MMSKVILVVLDGLNCKSTSINMGYLNALCKENLGKFYSLECELP
                     SMSRPLYECLLTGVKPVLSGIINNKSSFSKQTSIFDLCKEQGLKAGGAAYHWVFELYN
                     KKEFIPSLHRHIEDENLTLPYGHFYYEDDYLDSHLFADGEHLRNKYNLDFTLIHSMNI
                     DDAGHKFGSHSIEYANKTKKVDNLISEYLPTWLEQGINVIITSDHGMTEGKSHGGLSE
                     DEILVPFFTFGSAFSYENAKIKQDEICGSVCEILGLKHDKRYNDEILKAKK"
     gene            complement(4897..6222)
                     /locus_tag="RJ259_001142"
     CDS             complement(4897..6222)
                     /locus_tag="RJ259_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HDV7366846.1"
                     /translation="MKKVILTSAMLCSVLFGVQEYEANLAGHIIIDSKSTVKPPKDAP
                     DFFKTYGKFANITREEKIGTFKSKGNRETDFYLPFKNQPIQGHSGIKYIPKKDVFWVI
                     SDNGLGKKYNSYDSMLYAHEFKFDFKNSKYELLKTVFFKDSDKKYPYPITTETTKERY
                     LSGADFDTESIQVINDEFYIGDEFGPYLLHFDKNGNLKEVFDVYVEGKKLISPDNPSL
                     KFSDKPDGENEKFNIKRSKGFEAMASSKDGSKLYLLLEGSIYNNNAYENEKGKEYLRI
                     IEFDVKNKKFTGKTYKYFLEDKSHFIGDFNMIDDKYGIIIERDQKEGTKDKACKEGED
                     TKHCFNNVAQFKRIYKVKLDDKTHEAQKISYIDLLNIKDRNKISKKPLVNDKFVFPFE
                     TIEGVDIVDDSHIVIENDNNFPYSSSREPNKTDDNEFILLEVKDFLKSK"
     gene            complement(6233..7279)
                     /locus_tag="RJ259_001143"
     CDS             complement(6233..7279)
                     /locus_tag="RJ259_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HDV7366847.1"
                     /translation="MSKKFFLSLGLVALLFSNSQAIDENLIKAAQAEGRVNSLAMPDT
                     WANWKDTWADLKNLYGIEHSDTDMSSAQEIAKFKAEKKNASGDIGDVGASFGEIAVKQ
                     GVAQPFKTSYWDQIPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDIPKTWQDLLKGNYK
                     ITVGDVSVAVQAVSAVLAANYALGGDEKDLSPALAFFNTLAKQGRLVNNDVSIANLEK
                     GEVEVGLVWDFNGLGYRDKVGKDRYEVLIPADGSVISGYTTIINKYAKHPNTAKLARE
                     FILSDKGQINLAKGYARPIRIDHIILPDDIKAKLLPSEQYKNARAIKDQKAWEKSAKE
                     LPQLWQEKVIVDMK"
     gene            7396..8379
                     /gene="corA"
                     /locus_tag="RJ259_001144"
     CDS             7396..8379
                     /gene="corA"
                     /locus_tag="RJ259_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HDV7366848.1"
                     /translation="MLYIYIKTQNALVQRINFNLDSQELPQNILWIDLLHPSAAEIAF
                     ISSEFNLEFPTKEEREEIELSAKYWEDNATITINAHFLVRDLKNDEEDRNLIKLRTEI
                     VTFATAKNILFTIRYNEFSTFEEIQARILASPKNFEDGFDIIDKMFEVRVEKDADLLE
                     WIDKEARRLRTSVLEKKDEYSYDEMLKDISSLQELNMRVRDSLFDKRRAMTSLLKSDK
                     IDKDIKQNLTIVLKDLNSLVEFSVSQLNILDNIQTILASQINIEQNKIIKIFTVATVA
                     MMPPTLIGTVYGMNFKFMPELELHYAYPIVLGVMVISIILPLVVFKKKGWL"
     gene            8400..8942
                     /gene="mog"
                     /locus_tag="RJ259_001145"
     CDS             8400..8942
                     /gene="mog"
                     /locus_tag="RJ259_001145"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HDV7366849.1"
                     /translation="MDTINIGILTLSDRASSGIYEDKATAEIERVLNSYIKNDIIYHK
                     ELIPDDYDLIIKKLLYLADEKKCDLIVTSGGTGPALRDVTPEATEAVCDKMMPGFGEL
                     MRLESLKYVPTAILSRQSAGIRNKSFIINLPGNPKAIKECLEPVFPAIPYCIDLIEGA
                     YIEANDEVIKVFRPKKKCQN"
     gene            complement(8939..9124)
                     /locus_tag="RJ259_001146"
     CDS             complement(8939..9124)
                     /locus_tag="RJ259_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HDV7366850.1"
                     /translation="MFFKKKISQKQKEKPKIPINDVILDDRLCKFKNKVQKISKDEAS
                     ASLLARQLSRLVRANKF"
     gene            9251..10438
                     /locus_tag="RJ259_001147"
     CDS             9251..10438
                     /locus_tag="RJ259_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HDV7366851.1"
                     /translation="MTLIAILCLYTALLSWISYAQIRFLEREKDKQAQILSEKDYQNA
                     ADIGIENEKFKLFSNFYNLIISIAWIGFGFLYLKELLILNNTRFENTLFLLSFLIITS
                     ILNLPLSIYESFIKDKAHGFSNMTVKLFIKDTMKSLILTLIFGFLILYALLFCYDFFG
                     TFWWIAAFIFAFCIIVIINLIYPTLIAPIFNKMKKLDDENLLKKISSLMKQCGFSANG
                     IYVIDASKRDKRLNAYFGGLFKSKRVVLFDTLLKALNERELLAVLGHELGHFVHKDII
                     KALFNGAITMFLLFFVFANLPEFVYLESHLEGVNGGVFALLFILANIFNFLISPMLNA
                     LSRKNEFAADQHGAKVTSKEDMKNALIALARENKAFIKTSKIYAFFYLSHPSISDRIK
                     ALS"
     gene            10435..11250
                     /locus_tag="RJ259_001148"
     CDS             10435..11250
                     /locus_tag="RJ259_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDV7366852.1"
                     /translation="MTIKNALMEAKSSLKGYENEAVFILCEYLKKDKAWLFLNQDIQI
                     DHEPYFKLIRRFKSGEPFEYIFEKVDFWGLEFKIKKGILIPRYDSEILLFQILNLCKK
                     NTFNGILEIGFGSGILSIILAKELGLKITACDINPKALELALENAKLHKVDHLIDFKL
                     CNFKQIKENYDFIFSNPPYIKNSYPIDIWVQKEPKEALFGGEKGYEILEEIIHFSLDK
                     KVKFLACEFGYDQKEILEKILYQNNFIVDFFKDEQGYNRAFVAKFTNMRYDKK"
     gene            11263..>11478
                     /locus_tag="RJ259_001149"
     CDS             11263..>11478
                     /locus_tag="RJ259_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HDV7366853.1"
                     /translation="MKAVNLFLLASIIGVELILGIVVAPTIFFPQNLIGEGVLSHFQS
                     GLMMTRIFIKMGYLLVFVSVVNFLYEIY"
BASE COUNT         4143 a         1824 c         1573 g         3938 t
ORIGIN      
        1 ccagacttaa ttaaatataa atttaaaata agtataattt taaaacattt tatatcaaag
       61 gaaaaaaatg aaaaaaatat taagcattgc tctagttgct ttagttggtt tatttttagg
      121 tgcttgtagt gattctaaaa ataaagaatc aaatgcaagt gtagaattaa aggttggaac
      181 tgctccaaat tataaacctt ttaattataa agaaaactca aaacttacag gttttgatac
      241 tgatttggtt gaagagattg ccaaaaaaaa tggtattaaa attgtttggg ttgaaaccaa
      301 tttcgatgga ttgattcctg ctttaaaagc tggcaaaatc gatatgattg cctcagctat
      361 gagcgcaact gacgaaagaa gacaaagtgt tgattttacc aaaccttact atatgagtaa
      421 aaatctttat cttaagctaa aaaacaacga ctctcttcaa acgaaaaatg atttagaagg
      481 taaaaaaata ggagttcaac taggaacttt acaagaaaat actgcaaaag ctatcaaaaa
      541 tgcacaagta caaagcaata aagatttaaa catagctgtt ttagcactaa aaaacaacaa
      601 aatcgatgct attgtagctg atcaagatac tgctaaaggt tttttagctg aaaatccaga
      661 attggtaagc ttctaccaag aaacagatgg aggggaaggc tttagttttg cttttgataa
      721 aaataaacaa aaaaatatta ttgaaatatt taacaaaggc atagatgaag caaaaactga
      781 tggattttat gatactttaa ttaaaaaata tgaattagaa taagcgtgaa ttttcacgct
      841 tatagcttaa aaagttaaaa tttcatattt tctctctttt gcaattttta aaattttttc
      901 atcaccatta catacaaagg ctttgctaac agactctagt aaaggtaaat cattgataga
      961 atcactaaaa aaataagaat ctttcatcca tttttcataa tctttaccca aatattcctt
     1021 aagtcttaaa accttgcctt ccttaaagct ataaatccca taagcttttc cactaaattt
     1081 atcacccaca cgctcgcatt ttatggctat gctttctctc actcccaaaa aagaggcgat
     1141 ttttctaact aaaaattcag ccgtagctga aattataata cacctttgat cttgatattt
     1201 gattataagt tctttagctt tttcataagg ttttatataa atttttataa attcatctac
     1261 caaagatgaa attctatctt catttttacc cttaacactt tgaagaaaaa aagtcataaa
     1321 ttcatccata tcaaactttt tttcttgata ttgtttttga taaaaaacga ttttttctaa
     1381 atattcttga ggtaaaaaac ctttttcaac acaaaattta agccaaagtt tagcactatc
     1441 gccttgtatt aaagtatcat ctaaatcaaa taaaacaagc ttcattttaa ctcttttgct
     1501 aaagaaagat tgaattttaa agcgatttta tcacctgctt cataagtact atgagtgcta
     1561 aaatttaaag tatctacctt aaattcaatt tcttgcactc taaccctata gcgtatgata
     1621 ttgcctagca atgatttttc tttgatttta gcctctaagc cttcgttaga aatttctatg
     1681 gtttcaggac gcaaggctat atctttttta aaatcgtgtt ttaaacccaa gctatcaagc
     1741 tctttagggc ttaaaatatt gtaatttcct ataaagctag ccacaaaatg agattctggc
     1801 aaaagataaa gattatttgc gttggaattt tgtatgattt taccctcatt cattaaaata
     1861 atcgtatcgg ataactctaa agcttcttct tgatcgtgcg ttacaaaaat agtggtgagt
     1921 tcaagttctt tttgaatttc tttaatttgc acccttaaat acttacgaat tttagcatca
     1981 agtgccgata aaggctcatc aagtaaaagt aaatcaggtt taatcaccaa agatcttgct
     2041 aaagccactc tttgcatttg tccgcctgaa agcttatgtg gataagtttt agcgtattct
     2101 tcaagctcga cgagttttaa catttttttc actctttttt ctatgtcctt tttatccatt
     2161 tttttgatct ttaaaccaaa agctacattt tcaaaaacgt taagatttgg aaaaagagcg
     2221 taattttgaa aaaccatacc tatatttctt ttttgaggac ttaatttggt aagatcttta
     2281 tcatttaaag aaatttttcc tccattaatt tggctaagcc ctgctataca ccttaaaaga
     2341 gtggattttc cacagccact tgggcctaaa agggttataa actcaccctt tttagcacta
     2401 aaattaatat cttcaaaaat aattttatcc ccataagctt ttttaaaatt tttaatcttt
     2461 aaataagcca tttttcactc cttaatcaaa ctagctataa aagttgttat aaaaattaat
     2521 acaaaataaa ctattaccaa agcactagaa taatgcccac tttgattttt gatattataa
     2581 agataaactt gtaaagtctc ataagcactt cctacaagaa tatttgcgta taaaaattca
     2641 cctattaaaa aagaaaaact taaaaaaact gccaccaaaa ttccatttct taagttaggc
     2701 aagataagtt taaaaatcgc tcccattaaa gaacctccaa gcatagcatt agatgtgatg
     2761 agttcattta aattgacatt agatatagca ttatctaaag ccctatatat aaaaggtaaa
     2821 gctatagtaa aataagtaaa aatgagtatc caagctgtgc ctcctatatt gtcagcataa
     2881 agttgcaaaa gccccacaca gctaactata ggaggtacag caaaaggcat gataataagt
     2941 atatttacaa aggcttttaa ttttaaaaaa taataattta gcacaaaaac caaagggaaa
     3001 acaagaatca cagaaagtaa aatactgccc acacaaacaa gcaaagaatg ccaaagagca
     3061 agtaaaaatc tttcgtcatg aaaaagttct tgataccatt taagcgtaag atcatcaggc
     3121 aaaacactta caccccaaga agtggaaata gaatataaaa aagtagccat taaaggcaaa
     3181 gctaaaaata aaaaaaccaa aaacaaaact gcataatgat aaattttagc ttttaaactc
     3241 aaattttcat tcatttaaag caccttaaaa ttatattttt tagaaaggaa attggctata
     3301 aaggtaacaa caagcatgat aatagttata atgatactta aagcactagc catataagga
     3361 tcaagattga tatcgcctgc gattaaagca gcgattctta caggagcgac attaaaattt
     3421 cccgaactta aagcataaat agtcgcataa gctccaaaag cattggcaaa taaaatcaca
     3481 aaaacaccaa acaaagcagg agcgagcaaa ggcaaagcta tttttaacca atataaaaaa
     3541 ttgcctccac ctaacatttt acaagcattt aaatgtgaat tttcaaaact tttaaaagct
     3601 ggaagcaaaa gcaagatcgc caaaggaatt tgaaaataca cataaacaat atttacccca
     3661 aaattagcat aaacactaac aaaaggctct atacctaaat tcttcaaaaa cacattaact
     3721 acaccattgc ttccaagaac tataatgaaa gcaaaagcta aaggaactcc tgaaaaatta
     3781 cttatcatag tatttaaaga aaagagaaaa ttacatattt ttgatggagc taaaataaat
     3841 aaagaatagc tcgccaaaag ccctattaaa agtccaaaaa tactagaaat aaaactgatt
     3901 tgtaaagaat ttataatgct ttgtagatag aatttggact caaaaatatg tataaaattg
     3961 gctaaagaat aaatttcatc ctcttctaca taaaaagcat taaaaacaat ccaaatcaaa
     4021 ggtgctatca taaaaaaagt aaaaactata aaaaaaggta aaatacttaa aaaggctaga
     4081 aatttttctt tcattttttg gcctttaaaa tttcatcatt atatctctta tcgtgtttaa
     4141 gtcctaaaat ttcacagaca ctgccacaaa tttcatcctg ttttatcttg gcattttcat
     4201 acgaaaaagc actaccaaaa gtgaaaaaag gcactaaaat ttcatcttcg cttaagcctc
     4261 catgactttt accctctgtc ataccatgat cgcttgtgat gattacatta ataccttgtt
     4321 ctaaccaagt aggcaaatac tcagaaatca aattatcaac ttttttggtt ttattagcat
     4381 actcgataga gtgtgagcca aatttatgtc ctgcatcatc tatattcata gagtgtataa
     4441 gagtaaaatc tagattatat ttgtttctta aatgctctcc atctgcaaat aaatgagaat
     4501 ctaaataatc atcttcataa taaaaatgtc cataaggtaa agttaaattt tcatcttcta
     4561 tatggcgatg taaagaagga ataaattctt ttttattata aagctcaaaa acccaatgat
     4621 aagctgcgcc tccagctttt aagccttgtt ctttgcaaag gtcaaaaatg cttgtttgtt
     4681 ttgaaaaact cgatttatta ttaattatcc cacttaaaac aggctttacg cctgttaata
     4741 agcactcgta taaaggacga gacatactag gaagttcgca ttctaaagaa taaaatttgc
     4801 ctaaattctc tttgcaaagt gcatttaaat atcccatatt tatactagtg cttttacaat
     4861 ttaagccatc aagcacaact aaaataactt tggacatcat ttactcttta aaaaatcttt
     4921 tacttcaagc aaaataaact cattatcatc agtcttatta ggttctctac ttgaagaata
     4981 aggaaagtta ttgtcatttt ctataactat atgagagtca tctactatat ccacaccttc
     5041 tatggtttca aaaggaaaaa caaatttatc atttaccaaa ggctttttag aaattttatt
     5101 tctatcctta atatttaaaa gatctatata agaaattttt tgagcttcat gagttttatc
     5161 atctaattta accttataaa ttcttttaaa ttgagctaca ttattaaaac aatgcttagt
     5221 atcttcacct tctttgcaag ccttatcttt agtgccttct ttttgatctc tttctatgat
     5281 gatgccgtat ttatcatcta tcatattaaa atcacctatg aaatggcttt tatcttctaa
     5341 gaaatattta taagtttttc cggtgaattt tttatttttt acatcaaatt ctatgattct
     5401 tagatattct ttaccttttt cattctcata agcgttgtta ttataaatgc ttccttctaa
     5461 aagcaaataa agtttagaac catctttaga gcttgccata gcttcaaagc ctttagaacg
     5521 cttgatatta aatttctcat tttctccatc aggcttatcg ctaaatttta aacttggatt
     5581 atcaggagaa ataagttttt taccctccac atacacatca aaaacttctt tcaaattccc
     5641 attcttatca aaatgaagca aataaggacc aaattcatca cctatataaa attcatcatt
     5701 gataacctgt atactctcag tatcaaaatc agccccactt aaataccttt ctttggttgt
     5761 ttcggtggtt ataggatagg ggtatttttt atcactatct ttaaaaaaaa ctgtttttaa
     5821 aagttcgtat tttgagtttt taaaatcaaa tttaaactcg tgagcataaa gcatagaatc
     5881 ataagaatta tactttttac ccaagccatt atcgctaatt acccaaaaaa catctttttt
     5941 tggaatatat tttatcccac tatgtccttg tataggttga tttttaaaag gtaaataaaa
     6001 atctgtttcc ctgtttccct tagatttaaa agttccaatt ttttcttctc tagtgatatt
     6061 tgcaaatttc ccataagttt taaaaaaatc aggagcatcc ttaggaggtt ttactgtact
     6121 tttagaatct atgataatat gccctgctaa attggcctca tactcttgaa ctccaaataa
     6181 aacactgcaa agcatagcac ttgttaaaat aacctttttc atccaatctc ctttatttca
     6241 tatccactat aactttttct tgccaaagtt gtggtaattc tttagcgctt ttttcccaag
     6301 ctttttgatc tttgattgct cttgcatttt tgtattgctc acttggtaaa agtttagctt
     6361 ttatatcatc tggcaagata atatgatcaa ttcttattgg ccttgcataa ccttttgcta
     6421 gattgatttg tcctttatca gaaagtataa actcacgggc taatttagca gtatttggat
     6481 gttttgcgta tttattgata atagttgtat aacccgaaat aacactacca tcagcaggga
     6541 ttaaaacttc ataacgatct ttgcccactt tatctctata gcctaaacca ttaaaatccc
     6601 aaactaaacc cacttcaact tcaccttttt caagattggc tatacttaca tcattattta
     6661 caagtcttcc ttgtttggct aaagtattaa aaaaagctaa agcaggactt aaatcttttt
     6721 catccccacc taaggcataa ttagctgcta aaactgcact cacagcttga actgctacac
     6781 ttacatcacc cacggtaatt ttataatttc ccttaagcaa atcttgccaa gttttaggta
     6841 tatcttttac tacatcttta ttgactataa aagctatggt tcctgtataa gctaaaagcc
     6901 aatttccatc tttatcttta gcccaagttg gaatttgatc ccagtagctt gtcttaaaag
     6961 gctgagctac tccttgttta accgctatct ctccaaaaga agctcctaca tcccctatat
     7021 caccgcttgc atttttcttt tcggctttaa atttagcaat ttcttgagct gaactcatat
     7081 ctgtatcgct atgttctatg ccataaagat ttttaagatc tgcccaagta tccttccaat
     7141 ttgcccaagt atcaggcata gctaaagaat ttaccctacc ttctgcttgc gcagctttaa
     7201 tcaaattctc atcaatagct tgtgaatttg aaaacaataa ggcaacaaga cctaaactta
     7261 agaaaaattt cttactcatt tttttccttt caaaaaatat tttgaaaatt taatgagttt
     7321 tagaaacatt ttagaaacaa gttaattttt aagcaaacaa ggttataatt ttaaagtcat
     7381 aaacaaggag cgatcatgct ttatatttat atcaaaactc aaaatgcttt agttcaaaga
     7441 atcaatttta atctcgatag tcaagaacta ccacaaaata ttttatggat tgatttactt
     7501 catccaagtg cagcagaaat tgcttttata tcaagtgaat ttaatcttga gtttcctaca
     7561 aaagaagaaa gggaagaaat agagcttagc gcaaaatatt gggaagataa tgcgacaata
     7621 accatcaatg ctcatttttt agtaagagat cttaaaaatg atgaagagga taggaattta
     7681 atcaagcttc gcacagaaat tgttactttt gctaccgcta aaaatatctt atttactata
     7741 agatataacg aatttagcac ttttgaagaa attcaagcaa ggattttagc tagtccaaag
     7801 aattttgaag atggttttga tattattgat aaaatgtttg aagtgcgcgt tgaaaaagat
     7861 gcggatttac tagaatggat agataaagaa gcaagacgct taagaacaag tgttttagaa
     7921 aaaaaagatg aatatagtta tgatgaaatg ctaaaggata tttcaagttt gcaagagctt
     7981 aatatgcgcg taagagattc tttatttgat aagcgtcgcg ctatgacttc tttgctaaaa
     8041 agcgataaaa tcgataaaga cataaaacaa aatctcacta tagttttaaa agacttaaat
     8101 tctttggttg aatttagtgt ttcgcaactt aatatcttag ataatatcca aaccatttta
     8161 gccagccaaa tcaacataga acaaaacaaa atcattaaaa ttttcaccgt tgcaactgtt
     8221 gccatgatgc cacctacttt aataggaact gtttatggta tgaattttaa attcatgccc
     8281 gaacttgaac ttcactatgc ttatcccata gtgcttggcg tgatggtaat ttctatcatt
     8341 ttacctttgg ttgttttcaa gaaaaaagga tggttataaa aatttattaa ggagaaacaa
     8401 tggatacaat aaacatagga attttaaccc taagcgatag agcaagtagt ggtatatacg
     8461 aagataaagc cactgctgaa attgaaagag tgttaaattc atatataaaa aatgatatta
     8521 tttatcataa agaattaatc cctgatgatt atgatttgat cattaaaaaa ttactttatc
     8581 tagcagatga aaaaaaatgc gatttgattg ttacaagcgg aggtacaggt ccagcacttc
     8641 gtgatgtaac cccagaagcc acggaagccg tgtgtgataa aatgatgcca ggttttggag
     8701 aacttatgcg cttagaaagt ttaaaatatg tcccaacagc tatactttca agacagagtg
     8761 caggaattcg caataaatct tttatcatta atttaccagg aaatcctaag gctataaaag
     8821 aatgcctaga gcctgttttt ccggctatac cttactgtat cgatttgata gaaggcgctt
     8881 atatagaagc aaatgatgaa gttattaagg tttttcgccc taagaaaaaa tgtcaaaatt
     8941 aaaatttatt agccctaaca agtctgctta attgtctagc aagtagactt gccgaagctt
     9001 catctttgct tatcttttgc actttgtttt taaacttaca aagcctgtca tctaaaatca
     9061 catcattgat tggaatttta ggcttttctt tttgcttttg tgaaatcttt ttcttaaaaa
     9121 acattcttta atcctttttt ataaatatac accaacttag ttgaaaagaa tattatttta
     9181 gattttaaac tattaacttt atttcattat tttaagctag aattcgcaaa aaaccaatca
     9241 aggaaaaata atgactttaa ttgcaatttt atgtctttac acagcacttt tatcttggat
     9301 ttcctatgct caaattcgtt tcttagaaag agaaaaagac aaacaagctc aaattttaag
     9361 cgaaaaagac tatcaaaatg cagcagatat tggcatcgaa aatgaaaaat ttaaactatt
     9421 ttccaatttt tataatttaa tcatcagtat tgcatggata ggttttggat ttttatatct
     9481 taaagaattg cttatcttaa acaacactcg ttttgaaaat actttatttt tattatcttt
     9541 tttaataatc acaagtattt taaatctacc tttaagtatt tatgaaagtt ttatcaaaga
     9601 taaagcccat ggtttttcaa atatgactgt aaaacttttt atcaaagaca ctatgaaaag
     9661 tcttatttta actttaatat ttggattttt aatcctttat gctttgcttt tttgctatga
     9721 tttttttgga actttttggt ggattgcggc ctttattttt gccttttgta ttatagtgat
     9781 tataaatctc atctacccta ccttaatagc acctattttt aataaaatga aaaaactaga
     9841 cgatgaaaat ttattgaaaa aaatcagctc tttaatgaaa caatgcgggt ttagtgcaaa
     9901 tgggatttat gttattgatg caagcaaaag agataagcgt ttaaatgctt attttggtgg
     9961 actttttaaa agcaaaagag tggtgctttt tgatacatta ttaaaagcct taaatgaaag
    10021 agaactttta gctgttttag gacacgagct tggacatttt gttcataagg atattatcaa
    10081 agctttattt aacggcgcta taactatgtt tttacttttt tttgtttttg caaatttacc
    10141 tgaatttgtt tacttagaaa gtcatctaga aggagtaaat ggcggtgtgt ttgctctttt
    10201 atttatcttg gcaaatattt ttaacttttt aatctctcct atgcttaatg ccttaagtag
    10261 aaaaaatgaa tttgcggctg atcaacacgg agctaaagtt acaagcaaag aagatatgaa
    10321 aaatgcattg atagccctag caagagaaaa taaagctttt atcaaaacaa gtaaaatata
    10381 tgcatttttt tatctcagcc atccaagtat tagtgataga atcaaggctc tttcttgact
    10441 ataaaaaatg ctcttatgga agctaaatct agcttaaaag gttatgaaaa tgaagcagta
    10501 tttatactct gtgaatatct aaaaaaagat aaagcttggt tatttttaaa ccaagatata
    10561 caaatagatc atgaacctta ttttaagctt ataaggcgtt ttaaatctgg agaacctttt
    10621 gaatatatat ttgaaaaagt ggatttttgg ggcttagaat ttaagataaa aaaaggcatt
    10681 ctaatccctc gctacgatag tgaaatttta ctttttcaaa ttttaaattt atgcaaaaaa
    10741 aatactttta atgggatttt agaaatagga tttggaagtg gaattttaag cattatttta
    10801 gccaaagaac ttgggttaaa aatcacagcc tgcgatatca atcccaaagc cttagaatta
    10861 gctttagaga atgccaaatt acacaaagtc gatcacttga ttgactttaa actttgtaat
    10921 tttaagcaaa ttaaagaaaa ttatgatttt attttttcaa atccacccta tattaaaaat
    10981 tcatatccta tagatatttg ggtgcaaaaa gaacccaaag aggctttatt tggaggagaa
    11041 aaaggatatg aaattctaga agaaatcata catttttccc ttgataaaaa agttaaattt
    11101 ttagcttgcg aatttggcta tgatcaaaaa gaaattttgg aaaaaatttt atatcaaaat
    11161 aatttcattg ttgatttttt caaagatgaa caaggttata atcgtgcttt tgtagctaaa
    11221 tttacaaata tgcgttatga taaaaaataa aaggagaaac tcttgaaagc tgttaattta
    11281 tttttacttg cctccatcat aggggttgaa ctcatactag gaatagttgt tgcgccaaca
    11341 attttttttc ctcaaaatct tataggagaa ggagtgttga gccattttca aagtggctta
    11401 atgatgacgc gaatttttat taagatggga tatttactgg tttttgtttc agtggttaat
    11461 tttttatatg aaatttat
//
LOCUS       DAPIWJ010000054        11038 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.054, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000054 DAPIWJ010000000
VERSION     DAPIWJ010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11038)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11038)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11038
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.054"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..676)
                     /locus_tag="RJ259_001150"
     CDS             complement(<1..676)
                     /locus_tag="RJ259_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7366854.1"
                     /translation="MLYKRKNIKFKNFVDLHKNLSLSKLFDFYSVFEGFEKLNILNFE
                     DDVFTNIERILLDDYLKIKSYFALDETSSYALTLLAKNNRKRFSINRKIQHFKALSTL
                     KYLLETGIIKLEYSKEAKKIKDKRQKIKKELRSYVVQDKIIFSNHFTRFFFYFLKPNE
                     KLILQNRYKEVLECIKEKFELYQSFCFEQLSRELLEKKFNINGVQSYWDKNLELDLYY
                     QDENLCF"
     gene            712..1986
                     /locus_tag="RJ259_001151"
     CDS             712..1986
                     /locus_tag="RJ259_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HDV7366855.1"
                     /translation="MYLQISDLKKELILKKGILHFDFTASALALKCVEKEILKILPTY
                     ANTHSDSSLNSFKTQQTYEQARKDIKKSLSLDENFALIACGTGSSSAIKKFQELIGIY
                     IPPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFL
                     EKTLQKNKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISC
                     QYYDALFISSHKLIGGIGGSGLLAIKKDLCGNKPSFAAGGTVGYVSRTSQCYLCNEEA
                     LEEGGTPGILQLIRASLAFKIKDSIGVKNIEKKEEILKDYFFEKLKTIPNLILYAKNL
                     KTRLPIFAFNIKGISPFDIAYELSKKYHIETRAGCACAGPYGHDLLGLKDNQKLKTKP
                     GWLRISLHYTHEKEDIDYFFNALNKTIVKLSH"
     gene            complement(1983..2807)
                     /gene="purU"
                     /locus_tag="RJ259_001152"
     CDS             complement(1983..2807)
                     /gene="purU"
                     /locus_tag="RJ259_001152"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HDV7366856.1"
                     /translation="MISVLKICTKDQKGLIYRISDVIFKYHINIVKNDEFVGEGMFFF
                     RALLEGEFDKEAFIGTLEAMLGQEALIELCEKRKKDIVVFATKESHCLGDLLIKHYSN
                     ELEANIKAVISNHNSLKDLVEKFEIPYHFISAENLDRKEQENQILKCLEQYKFDYLVL
                     AKYMRILSPDFVRHFEGKIINIHHSFLPAFIGANPYKQAFERGVKIIGATAHFVNNNL
                     DEGPIITQAVSPVNHEFTWQDMQQAGRNIEKDVLSKALDLAFEDRIFIHNNKTIIF"
     gene            complement(2804..3922)
                     /locus_tag="RJ259_001153"
     CDS             complement(2804..3922)
                     /locus_tag="RJ259_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HDV7366857.1"
                     /translation="MQISKISLKNNPDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKI
                     CDYDIELYDIKPKDFEKIMQKLGAQGFGKSFFVYKFKNYDLALARTENKISYGHKGFE
                     VQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGVGFLRHIDKQSFQEDSL
                     RVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINAELCKFFKSPRLDVGYRYLQ
                     ELGLEKQVFGFESVFKSSEFQNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRTKL
                     KKEYLKYANQAFYLDDISDFELAKIAFEMPLKEWLGLWSKKRIEQAKRLGLYENKFES
                     KILAKDFINAGFCGKILGLKLQEARENELKEYIKGLAK"
     gene            complement(3891..4382)
                     /locus_tag="RJ259_001154"
     CDS             complement(3891..4382)
                     /locus_tag="RJ259_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HDV7366858.1"
                     /translation="MNLEDLAKKTISEVSSIMEEQRRQNEILKEQELNRKTEIKDELP
                     PMEFVCEELDTPQDLEDKISMAKFEEEQKIQNNIEISTQENKEFKKEEPFLQNEILNP
                     SVMTEVQTLNEDIFLKHLRERILVLFEGLNSIKKDDLENRLNLTINFLEFLLANIEDK
                     LKK"
     gene            complement(4379..4627)
                     /locus_tag="RJ259_001155"
     CDS             complement(4379..4627)
                     /locus_tag="RJ259_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDV7366859.1"
                     /translation="MMKNTVTEASIYEAQGLKDEALEIYKNILKEDPNNQNAIDAVRR
                     LSGFRSKHKDLNTQMLDFFINMKSDEEINEFKRWLIKI"
     gene            complement(4706..4879)
                     /gene="tatA2"
                     /locus_tag="RJ259_001156"
     CDS             complement(4706..4879)
                     /gene="tatA2"
                     /locus_tag="RJ259_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA2"
                     /protein_id="HDV7366860.1"
                     /translation="MVFLIPLLIIIGVIFGIDYVYFKNQDLKVQVKKEQKELNSSLEK
                     EKKEYIEKLFKTK"
     gene            complement(4892..5230)
                     /locus_tag="RJ259_001157"
     CDS             complement(4892..5230)
                     /locus_tag="RJ259_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HDV7366861.1"
                     /translation="MNNLSSVLILAKEEYINDLKKAISEIPFCSVELCENEKIIVVIE
                     SENLEDELNSYKMLEKLPNIISINMVFSYQDLNDDIQKAINSGAIETIEKNENAENVR
                     YYGSVFNQFS"
     gene            complement(5223..6137)
                     /locus_tag="RJ259_001158"
     CDS             complement(5223..6137)
                     /locus_tag="RJ259_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HDV7366862.1"
                     /translation="MKKFLFILSLFCVLSYAYELKLNANITALKLDKQNLYIGTDKGE
                     ILQYNIKDKSLKELLSLPKIKNYYGDDFAKIYNIDIFKHTLLILSEGDFGAKNLSFYK
                     ENLQIKKLEENSIIKAFFINENTYLLISIGSEIELIDKSLKNIKKFNFSHSSLNDAVL
                     NEDKSRLIAGFESGEVELFDLKNWKMLKNYDKMHKDNIYQVDFKNNVILSCGTDRRIG
                     VVKNEEQNFLQKDFLIYTCALSPSGEFAVYSDNEAGVSEVFSTSDFKPVKTFNNENLM
                     SEFIIFLNNKDFIVSGFGDSIMFRSIDE"
     gene            complement(6142..6666)
                     /locus_tag="RJ259_001159"
     CDS             complement(6142..6666)
                     /locus_tag="RJ259_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HDV7366863.1"
                     /translation="MMKKKLVLLGSAAVVFFAACAMNSGVSSEQIGLRKASLENENKV
                     NLVEANFTTLQPGESTRFERSYENAPPLIPHAIEDLLPITKDNNMCLSCHDKAIAADA
                     GATPLPASHYYDFRHNKTTGDMISDSRFNCTQCHVPQSDAKPLVGNSFKPEFKNEQLK
                     SRSNLIDVINEGVK"
     gene            complement(6663..7445)
                     /gene="napH"
                     /locus_tag="RJ259_001160"
     CDS             complement(6663..7445)
                     /gene="napH"
                     /locus_tag="RJ259_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HDV7366864.1"
                     /translation="MMKYLIARRIVQLGILALFSFKATDFILQGNLSSSRLFNTIPLS
                     DPFAVLQIILASWSIDLMALIGALIIFFIYGLLLGRVFCSWVCPVNLITDFAAFVRNK
                     LTLNNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFVA
                     FILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICPEKQ
                     VLWMVGKESTSVKSGECIRCARCIEVCNDDALNFNIFDLRNK"
     gene            complement(7442..8182)
                     /gene="napG"
                     /locus_tag="RJ259_001161"
     CDS             complement(7442..8182)
                     /gene="napG"
                     /locus_tag="RJ259_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HDV7366865.1"
                     /translation="MKGRREFFVSAFKAACLCTGGGFLANLALKADDNYALRPPGAEN
                     EARFLSKCIRCGLCVKACPYDTLKLASLLDSPKNGTPFFKAREIPCYLCKDIPCIREC
                     PTDALDKKHLEQGIESLKMGIAIVDSASCVAHWGIQCDACYRACPLIDRALKLELKRN
                     ERTAKHAFLLPSVDHEVCVGCGLCELACITEKPAIRVLPREYVLGKAGSHYVKGWDEK
                     DEGRIKNADTSKHFNVKKATNYLNDGEL"
     gene            complement(8200..10974)
                     /gene="napA"
                     /locus_tag="RJ259_001162"
     CDS             complement(8200..10974)
                     /gene="napA"
                     /locus_tag="RJ259_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HDV7366866.1"
                     /translation="MNRRDFIKNTAIASAASVAGLSVPSSMLGAQEEDWKWDKAVCRF
                     CGTGCGIMIARKDGKIVATKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLLRMNE
                     KGEFDKKGKFQQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALKLA
                     KAGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHP
                     ILWSRVSDRKLSNLDKVKVVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYN
                     HPEAMDMKFIKDHCVFATGYADIGYGMRNNPNHPKFKESEKDTVEKENVITLDDEEAT
                     SLSYLGVKAGDKFEMKHQGVADKNWEISFDEFKKGLAPYTLEYTARVAKGDDNESLED
                     FKKKLQELANLYIEKNRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAF
                     SLTGQPSACGTAREVGTFSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLN
                     IMRDLEDGKIKFAWVQVNNPWQNTANANHWIAAAREMDNFIVVSDCYPGISAKVADLI
                     LPSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAMSDTWQILEFAKRFKLKEVWKEQKV
                     DNKLTLPSVLEEAKAMGYSEDDTLFDVLFANKEAKSFNPNDAIAKGFDNTDVKGDERK
                     IQGSDGKEFTGYGFFVQKYLWEEYRKFGLGHGHDLADFDTYHKVRGLRWPVVNGKETQ
                     WRFNTKFDYYAKKAAPNSDFAFYGDFNKMLTNGDLIAPKDEKEHSIKNKAKIFFRPFM
                     KAPERPSKEYPFWLATGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQ
                     GDLVWVESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDF
                     KKCAVKIYKA"
BASE COUNT         3732 a         2076 c         1346 g         3884 t
ORIGIN      
        1 caaaacacaa attttcatct tgataataaa gatcaagttc taaattctta tcccagtaac
       61 tttgcactcc attgatattg aattttttct caagtaattc tctagaaagc tgttcaaaac
      121 aaaaactttg ataaagttca aatttttcct taatacattc taaaacttct ttataacgat
      181 tttgcaaaat aagcttttca ttgggcttta aaaaataaaa aaagaaacga gtaaaatggt
      241 tgctaaatat aatcttatct tggacaacat aagatcttag ttcttttttg attttttgtc
      301 ttttatcttt tattttttta gcttccttac tatactcaag ttttattata cctgtttcta
      361 aaagatattt aagtgtagat aaagctttaa aatgctgaat ttttctattg atagaaaaac
      421 gcttgcgatt gtttttagct agtaaagtaa gagcgtaaga acttgtttca tccaaggcga
      481 aataactttt aatttttaga taatcatcaa gcaaaattcg ctctatattt gtaaatacat
      541 cgtcttcaaa atttaaaatg tttaattttt caaaaccttc aaacacacta taaaaatcaa
      601 aaagcttact taaagacaaa ttcttatgca aatctacaaa gttcttaaat tttatatttt
      661 tccttttata aagcattttt atagtataat tttagcaaat ttttataagg attgtatttg
      721 caaatttcag atttaaaaaa agaattgatc ttaaaaaaag gtattttgca ttttgacttc
      781 acagcaagtg ctttagctct aaaatgtgta gaaaaagaaa ttttaaaaat tctcccaacc
      841 tatgcaaaca cacattctga tagctctttg aattctttta aaactcaaca aacttacgaa
      901 caagcaagaa aagatataaa aaaaagttta tcattagatg aaaattttgc ccttatagct
      961 tgcggaacag gatcaagcag tgctattaaa aaatttcaag aattgatcgg catttacatt
     1021 ccccctcttg taaaagaaag atattttacg caaattgata aaaatacctt acctttagtt
     1081 atcgtagggc cttatgagca tcattctaat gaactttcat ttcgagaagg cttgtgcgaa
     1141 tgtattagaa ttcccttgga taaaaatgga gaaattgatt ttgattttct agaaaaaact
     1201 ttacaaaaaa acaaaaaaag aaaaataatc gctagctttt ctttagcttc aaatgttact
     1261 gggatattaa gtgattacaa acgcatttct gaaatggttc gtaaatttaa agggatagtt
     1321 gcttttgatg catctagttt cattccctat aaaaacatat cttgtcaata ctatgatgcg
     1381 ttgtttataa gttctcataa attaatcggt ggtattggcg gttctggact tttagccatc
     1441 aaaaaagatc tttgtggaaa caaacctagc tttgccgcag gtggaactgt gggctatgtt
     1501 tctcgcactt cacaatgcta cctttgcaat gaagaagctt tagaagaagg aggaacacct
     1561 ggaattttac aactcattcg cgctagctta gcttttaaaa tcaaagattc tataggggtt
     1621 aaaaatatag aaaaaaaaga agaaatttta aaagattatt tttttgaaaa actaaaaact
     1681 atacctaatt taattttata cgcaaagaat ttaaaaaccc gattgcctat ttttgctttc
     1741 aatatcaaag gaatttctcc ttttgatatc gcttacgaac ttagtaaaaa ataccacata
     1801 gaaacacgcg ctggatgtgc ttgtgctggg ccttatggtc atgatttgct aggcttaaaa
     1861 gataatcaaa aacttaaaac aaaaccaggt tggttaagaa taagcttgca ttatacgcat
     1921 gaaaaagagg atattgatta tttttttaat gctttaaata aaactatagt aaaattatcg
     1981 cattaaaata ttatagtttt attattatgt ataaaaattc tatcttcaaa agccaaatca
     2041 agtgcttttg aaagaacatc tttttctata tttctacctg cttgttgcat atcttgccaa
     2101 gtaaattcat ggtttacagg cgaaacagct tgagtgataa taggaccttc atcaagatta
     2161 ttatttacaa aatgtgccgt agctccaatt attttaaccc ctctttcaaa ggcttgttta
     2221 taaggatttg ctcctataaa tgcaggtaag aaagaatggt gaatatttat aatcttgcct
     2281 tcaaaatgcc taacaaaatc aggagataaa attctcatat attttgccaa aaccaaataa
     2341 tcaaatttat attgttcaag acattttaaa atctgatttt cttgctcttt acgatctaaa
     2401 ttttcagcgc tgataaaatg ataaggaatt tcaaatttct caactaaatc ctttaaagag
     2461 ttgtgatttg aaatcacagc tttgatattt gcttcaagtt cgttactata atgctttatt
     2521 agcaaatctc ccaaacaatg actttcttta gtagcaaaaa caacaatatc tttttttctc
     2581 ttctcgcaaa gctctatcaa ggcttcttgt ccaagcatag cctcaagcgt tcctataaaa
     2641 gcttctttat caaactcacc ttctaaaaga gcacgaaaaa aaaacattcc ttcacctaca
     2701 aattcatcgt tttttactat attgatatga tatttaaaaa taacatcaga aattctataa
     2761 attaaacctt tttgatcttt ggtgcaaatt tttaatacag aaatcattta gctaaacctt
     2821 ttatatattc ttttaattca ttctctcttg cttcttgaag ctttaaacca agaattttac
     2881 cacaaaatcc agcatttatg aaatcttttg ctaaaatttt actttcaaac ttattctcat
     2941 aaagccctaa tcttttagct tgctcaatac gctttttact ccaaagtcca agccattcct
     3001 tcaaaggcat ttcaaaagca atttttgcta gttcaaaatc acttatatca tcaagataaa
     3061 aagcttgatt tgcgtatttt aggtattctt ttttaagttt agttctttta aaaaatatat
     3121 ctttttctaa attaaaaaaa ttcaaataca aatacaagaa taaagcatcg ctttttacaa
     3181 attctctact ttgtctgagt aaattttgaa attccgaact cttaaaaaca ctctcaaagc
     3241 cgaaaacctg tttctctaag ccaagttctt gtaaatatct atagccaaca tcaagtctag
     3301 gacttttaaa gaatttacaa agctccgcat tgatcctatc tttgctaaga tcagttatat
     3361 ccatactttg catcaatttc aagctttcac tagttatctt aaagttaaac cttgaggcaa
     3421 atactactgc tcttaatacc cttaaactat cctcttgaaa gctttgttta tcaatatgcc
     3481 ttaaaaagcc tactcctaga tcttttaatc ctccataaaa atctaaaaac tcatcgttaa
     3541 aaagattaat catcatagaa tttatggtaa aatcgcgtct tttggcgcca agtttttcat
     3601 cattgcaaat ttgaacttca aaacctttat gtccatagct tattttattt tcggttctag
     3661 caagagctaa atcataattt ttaaacttat atacaaaaaa actttttcca aagccttgtg
     3721 cgcccaattt ttgcataatc ttttcaaaat ctttaggttt tatatcataa agctctatat
     3781 catagtcgca aatttttaaa cctaaaaaca aatccctaac gctacctcca accaaatacg
     3841 ctcgtttggt ataaggcttt aaaaactcag cgataaactg taaatcggga ttatttttta
     3901 agcttatctt cgatatttgc aagcaaaaac tctaaaaaat ttatggtcaa gtttaaccta
     3961 ttttcaagat catctttttt tatgctattt aaaccttcaa aaagaactaa aattctctct
     4021 ctaagatgtt ttaaaaaaat atcctcatta agcgtttgaa cctctgtcat aacactagga
     4081 tttaaaattt cattttgtaa aaaaggctct tcttttttaa actctttatt ttcctgagta
     4141 gaaatttcaa tattattttg tattttttgc tcttcttcaa attttgccat agaaatttta
     4201 tcttctaagt cttgcggagt atcaagctct tcgcatacaa actccatagg tggtaattca
     4261 tcttttattt cagtttttct atttaattct tgttctttta aaatttcatt ttgtcttctt
     4321 tgctcttcca tgatagagct aacttcgcta atggtttttt tagctaaatc ttccaaattc
     4381 atatttttat caaccacctt ttaaattcat taatttcttc atcgcttttc atattaataa
     4441 aaaaatccaa catttgagtg tttaagtctt tatgcttgga tctaaaacca ctaagacgac
     4501 gaaccgcatc gatagcgttt tggttattcg gatcttcttt taagatattt ttataaattt
     4561 ctaaagcttc gtcttttaac ccttgagcct catagataga agcttcagtg actgtatttt
     4621 tcatcactgt ttcctaaaat ttttctttaa ttctagcaaa aagcttttta atttatcttt
     4681 aagaaaataa tatgattttt aatgcctatt ttgttttaaa caatttttct atatattctt
     4741 ttttttcttt ctctaagcta gaatttaatt ctttttgttc ttttttaact tgcactttta
     4801 aatcttgatt tttaaaatac acataatcaa ttccaaaaat aacaccaatt ataataagca
     4861 atgggattaa aaataccata tactttacac tttaagaaaa ttgattaaac acactaccat
     4921 agtagcgaac attctcagca ttttcatttt tttctatcgt ttctattgcg ccactattga
     4981 ttgctttttg gatatcatca tttaaatctt gataagaaaa aaccatatta atactgataa
     5041 tatttggcaa tttctcaagc attttataag agtttaactc atcttctaaa ttttcacttt
     5101 caatcacaac tataatcttt tcattttcac aaagttctac agaacaaaaa ggaatttcag
     5161 atatagcctt ttttaaatca tttatatatt cttcttttgc taaaatcaaa acactagaaa
     5221 gattattcat caatactcct aaacattata ctatcaccaa agcctgaaac gataaaatct
     5281 ttattgttta aaaaaataat aaactcactc atcaaatttt cattattaaa agttttaaca
     5341 ggcttaaaat cacttgtgct aaaaacttca ctaactccag cttcattatc gctataaaca
     5401 gcgaattctc cactaggact taaagcacaa gtatatatca aaaaatcttt ttgtaaaaaa
     5461 ttttgttctt cattttttac aactcctata cgcctatccg ttccacaact taaaataaca
     5521 ttatttttaa aatctacttg atagatatta tctttatgca ttttatcata gtttttcaac
     5581 atcttccaat ttttcaaatc aaaaagttct acttcgccac tctcaaaacc tgcaattagt
     5641 ctactcttat cttcatttaa aactgcatca ttaagactag aatgggaaaa attaaatttt
     5701 tttatatttt ttaaactttt atcaatcaat tctatttcag aaccaataga aatcaaaaga
     5761 taagtatttt cattgataaa aaatgctttt attatgctat tttcttcgag ctttttgatt
     5821 tgtaaatttt ccttataaaa acttaaattt ttagcaccaa aatcaccctc gctaagtatt
     5881 aaaagtgtat gtttaaaaat atcaatgttg taaattttag caaaatcatc accataataa
     5941 tttttaatct ttggcaaaga taaaagttct tttaaacttt tatctttaat gttatattgc
     6001 aaaatttcac ctttatcagt gcctatatat aagttttgct tatcaagctt taaagctgtt
     6061 atattggcat ttaatttcag ctcataagca taagacaaaa cacaaaaaag actcaaaata
     6121 aaaagaaatt ttttcattta tttactttac accctcatta atcacatcaa ttaaatttga
     6181 acgacttttt aattgttcat ttttaaattc aggtttaaag ctatttccca ctaaaggttt
     6241 tgcatcactt tgtggaacat gacactgagt gcaattaaaa cgactatcgc taatcatatc
     6301 tcctgtggtt ttattgtgtc taaaatcata ataatgacta gcaggaagtg gagttgcacc
     6361 agcatctgct gctatagcct tatcatggca gcttaagcac atattgttat ctttagttat
     6421 aggtaacaaa tcttcaatag catgcggaat taatggtggt gcattttcat aagaacgctc
     6481 aaaacgagta gattccccag gctgtaaagt tgtgaaattt gcctccacta aatttacttt
     6541 attttcattt tctaaacttg cttttctaag tccaatttgt tctgaactta ccccactatt
     6601 cattgcacaa gcggcaaaaa ataccactgc agcacttcct aataaaacca atttcttctt
     6661 catcatttat tccttaaatc aaaaatatta aaattcaaag catcatcatt acaaacttct
     6721 atacatcttg cacaccttat acactctcct gatttcacgc tagtactttc ttttccaacc
     6781 atccacaaaa cctgtttttc aggacaaata cggatacatt cataacattt agtgcattta
     6841 tcactatcat gctttatttt aagcaaagca aaacgagaaa taaaagcata aaaagctcct
     6901 agtggacaaa aatgtgaaca aattgcccta ggacttaaaa aagtatcgat acaaaaaagt
     6961 ataaaggcta caaaaatcca agaacttgta gcaaaaataa tccctctatg tatcattcct
     7021 atataagaaa aactttcaaa cacaggcaat gaaaatacaa aagaaaggac taaaaccaag
     7081 accaatacaa aatagcgtaa atttttaggc aaaattaaaa atttattatt aagggttaat
     7141 ttatttcgca caaaagcagc aaaatctgtg attaaattaa caggacaaac ccaagagcaa
     7201 aaaacccttc ctaaaagcaa accatagata aaaaatataa tcaaagctcc tattaaagcc
     7261 attaaatcta tactccagct tgctagaatg atttgcaaaa ctgcaaaagg atcacttaaa
     7321 ggtatggtat taaaaagtct agaagaactt aaatttccct gcaagataaa atctgtagct
     7381 ttaaaactaa aaagcgctaa aattccaagc tgaacgatgc gtctagcaat taaatacttc
     7441 atcacagttc tccatcattt aaataattgg ttgctttttt aacattaaaa tgttttgaag
     7501 tatctgcatt ttttatacga ccttcatctt tttcatccca gccttttaca taatgagatc
     7561 ctgcttttcc caatacatac tcccttggca aaacacgaat ggccggtttt tcagtaatac
     7621 aagccagttc acaaagccca caacctacac acacttcatg atccacacta ggtagtaaaa
     7681 aagcatgttt ggcggtgcgt tcattgcgtt taagctcaag ttttaaagcc ctatctatca
     7741 aaggacaagc tctataacaa gcatcacatt gaattcccca gtgtgccaca caagaagcac
     7801 tatcaacaat agcaataccc attttcaaag attctatacc ctgctctaaa tgctttttat
     7861 ctaaagcatc agttggacat tctctaatgc aaggaatatc cttgcaaaga taacaaggaa
     7921 tttctcttgc cttaaaaaaa ggcgtaccat tttttggact atctaacaag ctagcaagct
     7981 ttaaagtatc ataaggacag gcttttacac aaagcccaca acgaatacat ttacttaaaa
     8041 atctagcttc attttcagcc ccaggaggac gcaaggcata attatcatca gcttttaaag
     8101 ccaaattagc caaaaatcca cctcctgtac ataaacatgc agccttaaag gcactaacga
     8161 aaaattctct tctacctttc atttaatcaa aaccctaaat taagctttat aaatttttac
     8221 agcacatttt ttaaagtcag tttgttttga aagcggacaa gtcgcatcca aagtaacttt
     8281 attgatatat acattctcat caaaccacgg cacatacaca agtcctacag gcggtttgtt
     8341 tcttccacgc atatctactc ttgcttttac tttaccacga cgagattcca cccaaaccaa
     8401 atcaccttga tttaagccta atttctctcc atctttctca ctcatatagc aaagtgcttc
     8461 aggcacagca cggtaaagct caggcacacg catagtcata gttccactat gccaatgctc
     8521 taaaaccctt cctgttgcaa gccagaacgg atactcttta cttggtcttt caggtgcttt
     8581 cataaatggc ctaaagaaaa ttttagcctt atttttaata ctgtgctctt tttcatcttt
     8641 aggagctatt aaatccccat ttgtaagcat tttgttaaaa tcaccataaa aagcaaaatc
     8701 tgaatttgga gccgcttttt tagcataata atcaaattta gtattaaatc tccactgtgt
     8761 ttccttgcca ttaaccacag gccatcttaa accccttact ttatgatagg tatcaaaatc
     8821 cgctaaatca tgtccgtgtc ctaagccaaa tttacgatat tcttcccaaa ggtatttttg
     8881 aacgaaaaag ccatagcctg taaattcttt tccatcactg ccttgaattt ttctctcatc
     8941 acctttaaca tcggtattat caaagccttt tgcgatggca tcgtttggat taaagctttt
     9001 tgcttcttta ttggcaaata gcacatcaaa aagtgtatca tcttcgctat aacccatagc
     9061 ttttgcctct tctaaaacgc ttggcaaggt aagcttatta tccacttttt gctctttcca
     9121 aacttcttta agcttaaagc gttttgcaaa ttctaaaatt tgccaagtat cactcatggc
     9181 agcacctaca ggtaagactt gttgtttcca atgttgagtt cttctttcag cattaccata
     9241 agcaccccat ttttcataaa tcatagcgct tggtaaaata agatcagcta cttttgctga
     9301 aattccagga taacaatcac ttacaacaat aaaattatcc atttctcttg ctgctgcaat
     9361 ccagtgattt gcatttgcag tgttttgcca tggattattc acttgcaccc atgcaaattt
     9421 aatttttcca tcttctaaat ctctcatgat attaagataa ggagaacctg gttttgggtt
     9481 gatagtcttt gcaggaactt tccaaatttt ttcagaaatt tctctgtgtt ttggattggc
     9541 tacaaccata tctgcaggca aacgatgtga gaaagttcct acttccctag ctgttccaca
     9601 ggcacttggc tgtcctgtta aagaaaaggc tccactacct ggtttagctt gctttcctag
     9661 caaaaaatgt accatataag cttgttcatt tacccaagaa cctcttgtgt gttgattaaa
     9721 gcccatagtc caaaaactta cgactttgcg atttttctct atgtaaagat tagctaattc
     9781 ttgaagtttt ttcttaaaat cttccaaaga ctcattatca tcacctttgg ctactcttgc
     9841 agtgtattct aaagtataag gggctaaacc ttttttaaat tcgtcaaaag aaatttccca
     9901 gtttttatca gccacacctt gatgtttcat ttcaaattta tcacccgctt taacgccaag
     9961 ataagataaa gaagtagcct cttcatcatc taaagtgatt acattttctt tttcaaccgt
    10021 atctttttca ctttccttaa attttggatg atttggatta tttctcatac cataaccaat
    10081 atcagcataa ccagttgcaa atacgcagtg atctttgata aatttcatat ccatagcctc
    10141 tggatgatta taaacaatct ctcttgctat gtagttccaa atagccaaat ctgtatttgg
    10201 tttaaaaata atttcaatat cagcaatatt tgaagtacgg ttagaaaaag tgcttagatt
    10261 aacaacttta accttatcaa gattgcttag ttttctatca cttactcttg accaaaggat
    10321 tgggtgcatt tcagccatat tagctcccca agtgataata gtatctgtaa gctctatatc
    10381 atcataacag cctgatggct catctacacc aaaagtttgc ataaaaccaa ccactgcaga
    10441 ggccatacaa tgtcttgcat ttggatcgat attatttgtt ctaaaacccg cttttgcaag
    10501 ctttaaagca gcataacctt cttggatagt gtattgccca ctaccaaaaa tccctatacc
    10561 tgtaacgccg agttcattgt aggctttttt aaattgtttt tccatttcat caaaggctct
    10621 ttgccaagaa acttgttgaa atttgccttt tttatcaaat tcgccttttt cattcatgcg
    10681 aagcaaaggc ataacaagac gatcttcacc atacatgatc ttagcattaa aataaccttt
    10741 gatacaatta agtccgcgat ttacgggtgc tgcaggatca ccttttgttg ctacgatttt
    10801 gccatctttt ctggctatca taattccaca gccagttcca caaaatctac aaacagcctt
    10861 atcccatttc caatcttctt cttgtgcacc aagcatagag cttggaacac taagtcctgc
    10921 aacactagca gcacttgcaa tagcggtatt tttaataaaa tcccttctat tcatccttat
    10981 tcctccaaaa taaaaaaatc atcttattat aaaaaatgga gtataaaaat ctcttgaa
//
LOCUS       DAPIWJ010000055        10964 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.055, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000055 DAPIWJ010000000
VERSION     DAPIWJ010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10964
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.055"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(17..673)
                     /locus_tag="RJ259_001163"
     CDS             complement(17..673)
                     /locus_tag="RJ259_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HDV7366867.1"
                     /translation="MSKIDEISSKSKANILEHLKKAYKETTFTRIESIDPVEHIQTTQ
                     DMLTEMKQKMSDNKYIVENATKDTLEEKINEIVAKYSFKSMIYGADLNLNLEQIKAEK
                     KICFDKEIENLRSEVFHSDFSIIHARAGVSSHGVALIPSSKTQPRMLSLAPKLCIVLL
                     KKENVVKSLSEALNLVKKENEILPTNILFIAGPSRTADIELITVFGVHGPQIAHIIIY
                     "
     gene            complement(666..2105)
                     /locus_tag="RJ259_001164"
     CDS             complement(666..2105)
                     /locus_tag="RJ259_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HDV7366868.1"
                     /translation="MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFK
                     DWQGLRAKAKQAKNNALMSLEERLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEK
                     NITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
                     HEIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLI
                     ENEGNGRMCTTAPDIHIALCGIEKIMESFEDAATMVSLLTPSATGQFIPTYNNIITGP
                     RKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQ
                     TTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQ
                     GKNPPLGANNVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWTVQNFASILPVI
                     KKWYAFKELPQIKMDLYKEVQKLEGVSYE"
     gene            complement(2102..2842)
                     /locus_tag="RJ259_001165"
     CDS             complement(2102..2842)
                     /locus_tag="RJ259_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HDV7366869.1"
                     /translation="MMKKVYFYATCLGSTAMQQSVLNAIKLLRREGIEVIFKKNQTCC
                     AQPSFNSGYFDESREIALYNVDLFDKDYPIVVPSGSCAGMMSHDYKELFKNRPEFSKI
                     KTFSSRVIELSQYLDEVLKVDYEDKGVPIKVTWHSNCHALRVQKSIQASKNLIKKLKN
                     VELVELQYEEECCGFGGTFSVKEPEISNAMVRSKIKDIQNSGAKYLISGDGGCLLNID
                     GTMKRMGLDIKGIHLYDFLLKRLEGGRL"
     gene            complement(2965..4647)
                     /locus_tag="RJ259_001166"
     CDS             complement(2965..4647)
                     /locus_tag="RJ259_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HDV7366870.1"
                     /translation="MEQILTWQQIYDPFSNIWLSALVAFLPILCFLVCLVVLKLKGYQ
                     AGFLTVILATLVALFAYKMPWNLVGASFIQGFTNGMWPIAWIIIAAIFLYKLSIKSGS
                     FEIIKKSVMSITPDHRIQVILIGFCFGSFLEGAIGFGGPVAITAALLVGLGLRPLQAA
                     GLCLIANTAPVAFGAVGIPIIAMANLVGIEQHSVSAMVGRMLVPLSLTIPFFIVFLMD
                     GFKGIKETFPAILVAALSFTTTQFLSSNHLGAELPDIISAVVSLAVTTVFLKFWKPKN
                     IFRFDNESNFTQDNTLSFNQILKAWSPFILLIVCIIIWTQPWFKALFDKDGILSYTSI
                     TLQFSNITTGILSPSITGIGEAKPLSLALGVDLINGKTVAQAGTAILLAAFLTIAILK
                     IKAEDAAECFWVTLKEMAIPCITIGLVVAFAFISKNSGMSTTLGLAFAHTGDAFSFFS
                     PIIGWIGVFLTGSDTSANLLFGTLQQVSAQKLGISEALFLAANSVGGVVGKMISPQSI
                     AIACAAVGLVGKESDLFKFTLKYSVAFIILIGIWTCIIAFFLQGIIPEVIVK"
     gene            complement(4819..5388)
                     /gene="cdtC"
                     /locus_tag="RJ259_001167"
     CDS             complement(4819..5388)
                     /gene="cdtC"
                     /locus_tag="RJ259_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtC"
                     /protein_id="HDV7366871.1"
                     /translation="MKKIITLFFMFITLAFATPTGDLKDFTEMVSIRSLETGIFLSAF
                     RDTSKDPIDQNWNIKEIVLSDELKQKDKLADELPFGYVQFTNPKESDLCLAILEDGTF
                     GAKSCQDDLKDGKLETVFSIMPTTTSAVQIRSLVLESDECIVTFFNPNIPIQKRFGIA
                     PCTLDPIFFAEVNELMIITPPLTAATPLE"
     gene            complement(5399..6196)
                     /gene="cdtB"
                     /locus_tag="RJ259_001168"
     CDS             complement(5399..6196)
                     /gene="cdtB"
                     /locus_tag="RJ259_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin nuclease subunit
                     Cj-CdtB"
                     /protein_id="HDV7366872.1"
                     /translation="MKKIICLFLSFNLAFANLENFNVGTWNLQGSSAATESKWSVSVR
                     QLVSGANPLDILMIQEAGTLPRTATPTGRHVQQGGTPIDEYEWNLGTLSRPDRVFIYY
                     SRVDVGANRVNLAIVSRMQAEEVIVLPPPTTVSRPIIGIRNGNDAFFNIHALANGGTD
                     VGAIITAVDAHFANMPQVNWMIAGDFNRDPSTITSTVDRELANRIRVVFPTSATQASG
                     GTLDYAITGNSNRQQTYTPPLLAAILMLASLRSHIVSDHFPVNFRKF"
     gene            complement(6193..6999)
                     /gene="cdtA"
                     /locus_tag="RJ259_001169"
     CDS             complement(6193..6999)
                     /gene="cdtA"
                     /locus_tag="RJ259_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtA"
                     /protein_id="HDV7366873.1"
                     /translation="MQKIIVFILCCFMTFFLYACSSKFENVNPLGRSFGEFEDTDPLK
                     LGLEPTFPTNQEIPSLISGADLVPITPITPPLTRTSNSANNNAANGINPRFKDEAFND
                     VLIFENRPAVSDFLTILGPSGAALTVWALAQGNWIWGYTLIDSKGFGDARVWQLLLYP
                     NDFAMIKNAKTNTCLNAYGNGIVHYPCDASNHAQMWKLIPMSNTAVQIKNLGNGKCIQ
                     APITNLYGDFHKVFKIFTVECAKKDNFDQQWFLTTPPFTAKPLYRQGEVR"
     gene            7112..7345
                     /locus_tag="RJ259_001170"
     CDS             7112..7345
                     /locus_tag="RJ259_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HDV7366874.1"
                     /translation="MYLKHLYFSISQIFNFYKEGFKNLTLGKTLWKIIFIKLFVMFVI
                     LKLFVFDVNFNSIFKSDKEKSTFVLKNLTLEGK"
     gene            7346..8908
                     /locus_tag="RJ259_001171"
     CDS             7346..8908
                     /locus_tag="RJ259_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HDV7366875.1"
                     /translation="MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVK
                     TKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEG
                     IMAFFLEATFFAVMFFGWDKVSKGFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
                     FNPDTARNEMQSFFEVALSPVAISKFLHTIGSGYVISALFVMGISAWFMLKGRHIIEA
                     KKSLVVGASFGLVCSIFLFFSGDESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGIL
                     NPKKTIDNNESVFLFDITIPYALSILGNRDPNSFVPGIEDLIYGNESKGIEPMQNRID
                     RGKIAIQALKDYKLAKENNDTIAMANHKSILETHFKDFGYGYLEKPSDTIPPVALTFY
                     SFHIMVALGSFFFLLFIVTLYLTMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEV
                     GRQPWAIQDLLPVHIAATQLGKVNVQISFWIFAVLFTALLIAEVKIMLTQIKKGFDAH
                     AGHTPLMGKGEK"
     gene            8908..10032
                     /gene="cydB"
                     /locus_tag="RJ259_001172"
     CDS             8908..10032
                     /gene="cydB"
                     /locus_tag="RJ259_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HDV7366876.1"
                     /translation="MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKD
                     ELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQ
                     AVAYEYRKKENNVYGSKTYEIFFKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
                     NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFMNNINDENIKIRAMKKLMINSILFL
                     PFFLGFLAWIFLKDGFSVDTNGVVSMSANLYLYNFLNQMIFAVLLVIGVILVLLGMVQ
                     GTKGCSKAIFTLGLGTVLTVFALLSSIGLGQSAFYPSLSDLQSSLTLKNASSSYYTLS
                     VMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY"
     gene            complement(10226..10921)
                     /locus_tag="RJ259_001173"
     CDS             complement(10226..10921)
                     /locus_tag="RJ259_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HDV7366877.1"
                     /translation="MKTIGIIGGMSFESTITYYKTINQAINDKLKSLNSAKILLYSVN
                     FEEIENLQSQDKWQEAAQILTQCAKKLELAGANFIIIATNTMHKVFDEIQQNINIPIL
                     HIAKSSAKALKQENIQKIGLLGTKYTMTQDFYKKMLIEENISVITPSDEDIKIVNDII
                     FNELCKGEIKQDSKEKYLNIIKKLQEKGAKGVLLACTEIGLLISKNDTNIKIFDTSLI
                     HALDAANEALKDL"
BASE COUNT         3510 a         1779 c         1761 g         3914 t
ORIGIN      
        1 tgattctagt atagaatcag taaataataa tatgtgcaat ttgtggccca tgaacaccaa
       61 aaacagtgat aagttctata tctgctgttc ttgaaggccc tgctataaat aagatattag
      121 taggtaaaat ttcattttct ttttttacta aatttaaagc ttcgctaaga cttttaacaa
      181 cattttcttt tttaagcaat actatgcaaa gtttaggtgc aaggcttagc attctaggtt
      241 gggttttact tgaaggtata agtgcaactc cgtgagagct tacccctgct cttgcgtgaa
      301 tgatggaaaa atcactatga aaaacttcag atcttaaatt ttcgatttct ttatcaaagc
      361 aaatcttttt ttctgctttg atttgttcta aatttaaatt taaatccgct ccataaatca
      421 tacttttaaa gctatatttt gcgacaattt cattgatttt ttcttctaag gtatcttttg
      481 tagcattttc aacgatgtat ttgttatcgc tcattttttg cttcatttct gtaagcatat
      541 cttgggttgt ctggatatgt tctacaggat ctatactttc aatgcgtgtg aaagttgttt
      601 ctttgtaagc ttttttaaga tgttctaaaa tatttgcttt gcttttgctt gaaatttcat
      661 cgattttact catagcttac tccttctagt ttttgcactt ctttataaag atccatttta
      721 atttgaggta attctttaaa agcgtaccat tttttaatca caggcaaaat gcttgcgaaa
      781 ttttgtaccg tccagttgaa ataatgtgct tttgaaagtg aaaaacgcca tttatcgcca
      841 ttggttgcga tatttttaaa ttgtttaaaa gcaaaggctt ctagggcatt gtgatgaaca
      901 ttatttgctc ctaaaggtgg atttttacct tgtcctattt tatcacatct taatttgcga
      961 ataagatcag ccaaaggaat ttggactgga caaacttcag aacaacgccc acaaagtgaa
     1021 cagaaattca aaatatctcc tgtatgatct ataccaaaaa tattaggact gattacttct
     1081 cctataggtc ctggataagt ggtttgataa gcatgtccgc cgatttgatc ataaacaggg
     1141 caaaaattca tacaagcccc gcatcgaata caacgcaaag cctcataata atcctcatga
     1201 gctaacattt tagagcgatt gtgatcaaat aaaatcacat gtacttcttt aggaccatct
     1261 aaatctccat tttttctagg acctgtaatg atattgttat aagttggtat aaattgtcct
     1321 gtggctgaag gagtaagtaa agaaaccata gtagccgcat cttcaaagct ttccatgatt
     1381 ttttctatac cacaaagtgc gatatgaata tcaggtgctg tagtgcacat tctaccattt
     1441 ccttcatttt ctataagcca aaaagctcct tctcttgaca tggcaaaatt gaccccacta
     1501 agtccaagtt ttaagccttc aaaatctttt cttaaatgtt ctctagccac cgcatttaaa
     1561 ctttcgggtt catcgttttc taaatttgct cctaattttt ctttgaaaat ttctccgatt
     1621 tcatggcggt ttctatgtat ggcaggtaca actatgtgta aagggggttc ttcattaagc
     1681 tgtaaaataa gctctccaag atcggtttct atagctttta aacctttttt ttctaggtag
     1741 tgatttaggc ctatttcttc acttgccata gacttgcctt ttaaaagctt ggtgatattt
     1801 ttttctttca tgatttcata gacgatttca caggcatctt catcactact tgcccaatgc
     1861 accttaatgc cattttttgt agcatttttt tcaaattcta aaagtctttc ttctaagctc
     1921 attaaggcat tatttttagc ttgcttagct ttagctctta agccctgcca gtctttaaat
     1981 ctagcatcaa taacattgag tctatttttt tgcaaagtat gcatggcagt cattaaattt
     2041 tcttgcattt gtttgtcatt gagtttaatt tgaacgattt gttcgtgagg aattttttga
     2101 ctcatagtct ccctccttct aagcgtttaa gtaaaaagtc atataaatgt atgcctttta
     2161 tatccaaacc cattcttttc attgtgccat ctatatttaa aagacaacct ccatcaccac
     2221 tgatgagata ttttgcaccg ctattttgta tatctttgat tttgcttctt accatagcat
     2281 ttgaaatttc aggctctttt actgaaaagg ttcctccaaa accacagcat tcttcttcgt
     2341 attgaagttc tactaattct acgtttttta gttttttgat aagattttta ctcgcttgta
     2401 tgcttttttg cactcttaaa gcatggcaat tagaatgcca agttactttt ataggtacac
     2461 ctttatcttc ataatctact tttaaaactt catcaaggta ttgtgaaagt tctatcactc
     2521 tagagctaaa agtttttatt ttggaaaatt caggtctgtt tttaaaaagc tctttatagt
     2581 catgactcat catacccgca caagaaccac tgggtacaac gatgggataa tctttatcaa
     2641 ataaatctac attatataaa gcgatctcac gactttcatc gaaataacct gagttaaaag
     2701 aaggttgggc gcaacaggtt tgattttttt tgaaaatcac ttcaataccc tcacgcctta
     2761 aaagttttat cgcatttaaa acgctttgtt gcatagcagt acttcctaag catgtggcgt
     2821 aaaaatacac ttttttcatc atttttctcc ttttaggata atttaggata aatgttctaa
     2881 tcctgtaaaa ataaaagcaa agtaaaattt ctaacaaata ttctaaaaac gaatatttgt
     2941 tgaaataaaa cttaaatttt ttaattattt cactataact tcagggatga ttccttgtaa
     3001 gaaaaaagct ataatgcaag tccaaattcc tattaaaata ataaaagcta cagaatattt
     3061 taatgtgaat ttgaaaagat cagattcttt tcccacaagt ccaaccgctg cacaagctat
     3121 agcaatgctt tgtggactga tcatcttccc aacaacccca cctactgaat tagctgctaa
     3181 aaataaagct tcgctaatac ctagtttttg agcgcttact tgttgcaagg ttccaaaaag
     3241 taaattagca cttgtatcag agcctgttaa aaatacccct atccagccaa tgattggtga
     3301 aaagaaagaa aaagcatcac ctgtgtgtgc aaaagcaagt cctaaagtag tgctcatacc
     3361 actattttta gagataaaag caaaggccac aaccaaacct atggtgatac aaggtatagc
     3421 catttctttt aaggtaaccc aaaagcattc tgcagcatct tcggctttga tttttaaaat
     3481 agctatagtt aaaaaagcgg caagtaaaat cgctgttcct gcttgagcta cggtttttcc
     3541 attgattaaa tctacaccca aggccaaaga taaaggctta gcttctccta tgcctgtgat
     3601 agaagggctt aaaattccag ttgtgatatt gctaaattgt aaagtaatac ttgtatagct
     3661 taaaattccg tccttatcaa agagagcttt aaaccaaggt tgtgtccaaa tgataataca
     3721 aacaatgagt aaaataaaag gtgaccaagc ttttaaaatt tgattaaaac ttaaggtgtt
     3781 atcttgagtg aaattgcttt cattgtcaaa tctaaaaata ttttttggtt tccaaaattt
     3841 caaaaataca gtcgtaactg ctaaagaaac cacagctgaa ataatatcag gtaattccgc
     3901 tcctaggtga tttgagctta aaaattgagt agttgtaaaa cttagcgccg caactaaaat
     3961 agctggaaaa gtttctttaa tacctttaaa tccatccatt aaaaaaacta tgaaaaaagg
     4021 tatagtaagg cttaaaggaa ctagcattct acctaccatg gcagaaactg aatgctgttc
     4081 tatgccgaca agatttgcca tagcaataat aggaattccc accgcaccaa aagcaacagg
     4141 agcggtattt gcgataagac aaagccctgc agcttgtaaa ggacgcaagc caagtcctac
     4201 taaaagtgca gcggttatag ccacagggcc accaaaacct atagcaccct ctaaaaatga
     4261 accaaaacaa aaacctatta aaatcacttg aattctatga tctggagtaa tgctcatcac
     4321 gcttttttta atgatttcaa aagaacctga cttgatagaa agtttgtaaa gaaagattgc
     4381 cgcgatgata atccaagcta taggccacat accatttgta aagccttgaa taaaacttgc
     4441 acccactaaa ttccaaggca ttttataggc aaataaagct actaaagtag caagtataac
     4501 agttaaaaaa cctgcttgat agcctttaag ttttaaaaca accaaacaaa ctaaaaaaca
     4561 tagtataggt aaaaatgcca ctaaagcact tagccaaata tttgaaaaag ggtcataaat
     4621 ttgttgccat gttaaaattt gttccaattt ttcctccttg ataattatta tgtataaatt
     4681 tattgtaaca aaaaattaca ttaaaataaa aaaattatag agcaaggtaa attacattgt
     4741 attattatta attattttgt gtattttagt aatatcataa atattaaata aatataaaaa
     4801 tagaacaaga taaaaatctt attctaaagg ggtagcagct gttaaaggtg gggttataat
     4861 cattagttca tttacttcag caaaaaaaat aggatctagg gtgcaagggg ctattccaaa
     4921 gcgtttttgt ataggaatat ttggattaaa aaaagttact atacattcat cagattccaa
     4981 aactaaagaa cgaatttgca cagctgaagt tgttgttggc attatagaaa atacagtttc
     5041 taatttacca tcttttagat catcttgaca agattttgct ccaaaggttc catcttctaa
     5101 gatggctaaa caaagatcgc tttcttttgg atttgtaaat tgcacataac caaaaggaag
     5161 ttcatcagct aatttatctt tttgttttaa ctcatcgctt aaaacaattt ctttaatatt
     5221 ccaattttga tcaataggat cttttgaggt atccctaaag gcgcttaaaa aaattcccgt
     5281 ttctaagctt cttatagaaa ccatttcggt aaaatctttc aaatctccag taggagttgc
     5341 aaaggctaaa gttataaaca taaaaaacaa agtaataatt tttttcatat taaatgtcct
     5401 aaaattttct aaaatttact ggaaaatgat ctgaaactat atgagatctt aaacttgcaa
     5461 gcattaaaat cgcagctaaa agcggtggag tataggtttg ttgtctattt gaatttcctg
     5521 taattgcata atcaagagtc cctccgcttg cttgagttgc gctagttgga aaaaccactc
     5581 taattctatt tgctaattct ctatccactg tacttgttat agtagaagga tcacggttaa
     5641 aatcccctgc tatcatccag ttaacttgag gcatatttgc aaaatgtgca tctacagctg
     5701 tgataattgc tcctacatct gttcctccat tagctaaagc atggatattg aaaaaagcat
     5761 catttccatt gcgaattcct ataatgggtc ttgaaactgt agtaggtgga ggtaaaacaa
     5821 tcacttcttc agcttgcatt cttgaaacta tagctaaatt tacacgatta gctcctacat
     5881 caacgcgaga ataataaata aaaaccctat caggccttga aagagttcct aaattccact
     5941 catattcatc aataggtgtt ccaccttgtt gcacatggcg tcctgttgga gtggctgttc
     6001 ttggtaaagt tcctgcttct tgtatcatta agatatctaa ggggtttgct ccacttacaa
     6061 gttgtcttac actaacactc catttgcttt ctgtggctgc ggatgagcct tgcaaattcc
     6121 aagtgccaac attaaaattt tctaaatttg caaaagcaag gttaaaagat aaaaataaac
     6181 atataatttt tttcatcgta cctctccttg gcgatataaa ggttttgcgg taaaaggcgg
     6241 agtagttaaa aaccattgtt gatcaaaatt atcttttttt gcacactcta cggtaaaaat
     6301 tttaaaaacc ttgtgaaaat caccataaag atttgtaata ggtgcttgta tgcattttcc
     6361 atttcctaaa tttttaattt gaaccgctgt attgctcata gggataagtt tccacatttg
     6421 tgcgtgattg cttgcatcac aaggataatg gacaattcca ttaccataag cattaagaca
     6481 agtattggtt ttggcatttt taatcattgc aaaatcatta ggataaagca aaagttgcca
     6541 aactctagca tcgccaaatc ctttgctatc gattaaagta tagccccaaa tccaatttcc
     6601 ttgtgctaaa gcccaaaccg ttaaagctgc tccgctaggg cctaaaatgg ttaaaaaatc
     6661 agaaaccgca gggcgatttt caaaaattaa aacatcatta aaagcttcgt ctttaaagcg
     6721 aggattgatc ccatttgctg cattattgtt ggcactattg cttgttctag ttaaaggtgg
     6781 ggtaatagga gtaataggta ctaaatcagc accgctaatt aaacttggaa tttcttgatt
     6841 ggtaggaaaa gtaggttcaa gtcctagttt taaaggatca gtatcttcaa attctccaaa
     6901 tgaacgcccc aaaggattta cattttcaaa tttagaagaa catgcataaa gaaaaaaagt
     6961 cataaaacaa cataaaataa aaactataat tttttgcatt aaaaaccttg atatgtattt
     7021 aaatttttaa gaaaataata acataaattt cattataatt ttccgctttt taaaaatgtt
     7081 ttattttgtt gtttttaaag gtagaattta tatgtatctt aaacacttat attttagcat
     7141 ctctcaaatt tttaattttt acaaagaagg ttttaaaaat ttaactcttg gaaagaccct
     7201 ttggaaaatt atttttatca aactttttgt tatgtttgtg attttaaaac tttttgtttt
     7261 tgatgtaaat tttaattcta tttttaaaag cgacaaagaa aaaagcactt ttgtactcaa
     7321 aaatcttaca ctcgaaggaa aataaatgaa cgaacttagt agcgttgatt ggtcaagagc
     7381 gcagtttgct ttaactgcac tttatcattt tttgtttgtg cctttaacct taggcttgtc
     7441 ttttatgatc gctatcatgg aaaccatcta tgtaaaaact aaaaatgaaa gatggaaaaa
     7501 aatcaccaaa ttttggcttt cattatttgc tataaatttt gctatcggtg tagctacagg
     7561 cattataatg gaatttgaat ttggaacaaa ctgggcaaat tatagctggt ttgtgggtga
     7621 tatttttggt gcacctttgg cggttgaagg tattatggca ttttttttag aggctacttt
     7681 ttttgcagtt atgttttttg gctgggataa agtaagcaag ggttttcact tactttcaac
     7741 ttggtgtgtg gctataggaa gtaatctttc tgctttttgg attttagtgg caaatggttg
     7801 gatgcaatat cctgtaggaa tgagctttaa ccctgacaca gcaagaaatg aaatgcaaag
     7861 cttttttgaa gtagcacttt ctcctgtagc tatttcaaaa tttttacata ccataggcag
     7921 tggttatgta atttcagctt tatttgtaat gggaatttca gcttggttta tgttaaaagg
     7981 acgccatatt atcgaggcta aaaaaagctt agttgtagga gctagttttg gtttggtttg
     8041 ttcaatcttt ttgtttttca gcggagatga aagcgcttac cgtgtaactc aaactcaacc
     8101 tatgaaactt gcagctatgg aaggggttta tcaaggtgaa catcgtgcag gacttgtacc
     8161 ttttggaatt ttaaatccta aaaaaaccat agataataac gaaagtgtgt ttttatttga
     8221 cattactata ccttacgctc tttctatatt aggaaaccgt gatccaaatt cttttgttcc
     8281 aggaattgaa gatttgatct atggaaatga aagcaaaggt atagaaccta tgcaaaatcg
     8341 tatcgataga ggaaaaatcg ctatacaagc tctaaaagac tataaacttg ctaaagaaaa
     8401 caatgataca atagctatgg caaatcacaa atccatttta gaaactcatt ttaaagattt
     8461 tggttatgga tatttagaaa aaccaagcga tactattcca cctgtggctt taacttttta
     8521 tagctttcat atcatggttg ctttaggaag ttttttcttt ttacttttca tcgttacgct
     8581 ttatcttacc atggcaaatg atattgagaa atttagaaaa gtactttggg tgtgtttgtt
     8641 atccattcca ttgggttata ttgccgctga agcaggttgg attgttgctg aagtaggcag
     8701 acaaccttgg gcaattcaag acttgcttcc tgtacatatc gcagcaacac aacttggaaa
     8761 agtcaatgtt caaatttcat tttggatttt tgcagtactt tttacagcat tattgattgc
     8821 agaagttaaa atcatgctta ctcagattaa aaaaggtttt gacgcacatg caggacatac
     8881 tccacttatg ggcaaaggag aaaaataatg ttttttggtt tagaacttga aggtttgcaa
     8941 atttattggt ggttgatttt aagtttactt ggtggacttt tagtttttat gttttttgtt
     9001 caaggtggac agactttaat cgatgagctt agcaaggatg agcttgaaaa aactatgcta
     9061 gttaattctt tagggcgtaa atgggagctt ggttttacaa ctctcgtact ttttggcgga
     9121 gcagcttttg cagcttttcc acttttttat agtacaagtt ttggcggagc ttattgggct
     9181 tggctttgta ttttattttg ttttatttta caggctgtgg cttatgaata tcgcaaaaaa
     9241 gaaaataatg tttatggctc taaaacctat gaaatttttt ttaaaattaa tggttattta
     9301 ggtgtgtttt taatcggagt tgcagtaagt agttttttta gcggttctga atttatctta
     9361 aatgagcata attttgtttc ttggcaaaat cctttgcacg gcttagaact tttacttaat
     9421 ccttttaatt atctcttagg cttagcttta gtatttttag caaggctttt aggcgcagcg
     9481 tattttatga acaatatcaa tgatgagaat atcaaaataa gagctatgaa aaaactcatg
     9541 atcaatagta ttttattttt accttttttc ttaggttttt tagcgtggat tttcttaaaa
     9601 gatggtttta gtgtagatac aaatggagtt gtaagcatga gtgcgaattt atatttatat
     9661 aatttcttaa atcaaatgat ttttgctgtt ttgcttgtta ttggtgtgat tttagtgctt
     9721 ttaggtatgg ttcaaggaac aaaaggttgc tctaaagcta tttttaccct aggacttgga
     9781 acggttttaa cagtttttgc tttattatca agcattggtt taggtcaaag tgctttttac
     9841 ccatctttaa gtgatttaca aagttcttta actttaaaaa atgcaagttc aagctattat
     9901 actctaagcg tcatggctta tgtatcttta cttgtacctt ttgttttagc ttatattatc
     9961 tatgtttgga atgcaatgga taaagtaaaa atcacacgcg aagaaatcgc aaacgatgat
    10021 cacgcatatt aaggagaaaa aatgttacat gctttgtttt tattggcttg gcctttagta
    10081 atttatctga gctataaatt tataatgcta aatatcaatc aattagaaaa agatagcaaa
    10141 ctataaagca agataagatt taaaccgata taagtataaa tcttttcaaa atattgcaat
    10201 ttgcccattt ttgggtatct tttaatcata aatcttttaa agcttcatta gcagcatcaa
    10261 gggcgtgaat aaggcttgtg tcaaaaattt tgatatttgt atcatttttg gatattaata
    10321 aaccaatttc agtgcaagct aaaagcactc cttttgcccc tttttcttgt agttttttta
    10381 taatatttaa atatttttct ttagaatctt gcttgatttc acctttgcaa agctcattaa
    10441 aaataatatc attaacgatt tttatatctt catcactagg agtaataacg ctaatatttt
    10501 cttcaatcag cattttttta taaaaatcct gcgtcattgt gtatttagta cccaataaac
    10561 caattttttg tatgttttct tgttttaaag ccttagcaga actttttgca atatgtaaaa
    10621 tagggatatt tatattttgt tgaatttcat caaaaacctt atgcatagta ttagttgcaa
    10681 ttattataaa attagcccct gcaagttcta attttttagc acattgagtc aaaatttgtg
    10741 cagcttcttg ccatttatct tggctttgta aattttctat ttcttcaaaa ttaacactgt
    10801 aaagtaaaat ttttgcagaa tttaaagatt ttaatttatc atttatagct tgatttattg
    10861 ttttataata agtaatagtg ctttcaaaac tcattccgcc tataatacca atggttttca
    10921 tttttctcct taagaattaa tttttgagtc gttttattac aata
//
LOCUS       DAPIWJ010000056        10876 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.056, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000056 DAPIWJ010000000
VERSION     DAPIWJ010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10876
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.056"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..1057
                     /locus_tag="RJ259_001174"
     CDS             <1..1057
                     /locus_tag="RJ259_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF5644 domain-containing protein"
                     /protein_id="HDV7366878.1"
                     /translation="RIFRFDKTKDYEAYYKPYIYDNYENFASFYDLLLQVQNDDIYFD
                     FDKDEDTYIVVNKQIIPLFTPLEKIAKEFDFNLCIEPLSTKRAIKDLIIDKNDFLDKY
                     KYLEKFGDEEDKKLYAKYDYLYYATEILDYLPEYMGDGVFYLASKMIEKYPEKKIEIL
                     KTLADKEKGIFYHLESKNEILETTIKNLQNEILNLGLFDKNILHFDLPKTNAFDNEIK
                     ELKEIKHNFKDFNIAFYGFNACDTLKSKLKAKFISYENSIKNNGFSLLNLNPTLSYKI
                     AADIVLDAYDSGADFMVVKEEKDFYLFDTCAKKLMQTSKRDFEDFYILSRFEFLALIE
                     GIQAPSLKNHTLKVSLI"
     gene            1054..1437
                     /locus_tag="RJ259_001175"
     CDS             1054..1437
                     /locus_tag="RJ259_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDV7366879.1"
                     /translation="MKISLECKDLIIEKTLELFLKDHLVMKKNCDFIISDEKIHTAKP
                     LFIISKNSPFLSIPFSKETLFESLNEFDNALKAAALQLALEQKRLLEEKIDAIALEFK
                     KDYENKIDLAIKDLKNKLVKALNDE"
     gene            1430..2113
                     /locus_tag="RJ259_001176"
     CDS             1430..2113
                     /locus_tag="RJ259_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmD family RNA methyltransferase"
                     /protein_id="HDV7366880.1"
                     /translation="MNDEFISVKDFFNHNEKRKKFLQKQEIKPPKEKTKKTKETKLYT
                     NIESGKYKGKKLLLPSLTTTRSTKSIVKSCVFNVIREDLRSKIFIEAFGGSALIAAEA
                     LSNYALKAYAIELDIKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILYL
                     DPPFDIREGFSDIYEKIYHFLENLDLKTLNLIIFEYHSTIKTPEKIQNFQKVKEKKFG
                     STSLSFYSS"
     gene            2172..3218
                     /locus_tag="RJ259_001177"
     CDS             2172..3218
                     /locus_tag="RJ259_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HDV7366881.1"
                     /translation="MRVLTIFLLFMTSIFAVQIKDVANTVGVRDNQLIGYGLVVGLNG
                     SGDGTSSKFTLQSISNLLQGMNIKVDPNDIKSKNTAAVMVTAKLPAFAKSGDKLDITV
                     SSMGDAKSLQGGTLLLTALRGIDGEIYAIAQGSISTGGLTPRPGGTGSHSTAATVMGG
                     ANVEREIPQNFSQNNDLTLSLKVADFKTANNIERVLNTVFGEEVAKAIDSRTVKLKKP
                     EDLSNVDFMARVLEQDIAYKPQSKVIIDERTGTVIAGVDVEVEPVLITHKDITIKIDP
                     NNNAVANQNEIDMKDGGFVDPSSNTLRINNAKSTVANIARMLNKLGATPNDIIAIMEN
                     LKRAGAINADLEII"
     gene            3218..3559
                     /locus_tag="RJ259_001178"
     CDS             3218..3559
                     /locus_tag="RJ259_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366882.1"
                     /translation="MKVDNFLNTYSMNSALLDRAAKARSLESSIKINDNDIVTKSKED
                     KALKEQTNAFEAFFLKQVLDVSLKSQNSLFGKDASDEIYSSMYNDTMSKALSGGMGFS
                     KLLYDFLKERG"
     gene            3622..3819
                     /gene="flgM"
                     /locus_tag="RJ259_001179"
     CDS             3622..3819
                     /gene="flgM"
                     /locus_tag="RJ259_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HDV7366883.1"
                     /translation="MINPIQQSYVANTALNTNRIDKETKTNDTQKTENDKASKIAEQI
                     KNGTYKIDTKATAAAIADSLI"
     gene            3862..4296
                     /locus_tag="RJ259_001180"
     CDS             3862..4296
                     /locus_tag="RJ259_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HDV7366884.1"
                     /translation="MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESVTPSVEEKNK
                     LIAEFITAKKQLDVALVELNNSSTKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAK
                     FVLIVKDFLDGLVNKMFDINDGTNNAYGDKKTNPESIFKINV"
     gene            4306..6132
                     /gene="flgK"
                     /locus_tag="RJ259_001181"
     CDS             4306..6132
                     /gene="flgK"
                     /locus_tag="RJ259_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HDV7366885.1"
                     /translation="MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQT
                     TNGYITTGGVQVGTGTAVESIVRLHDEYSYYKLKGASTQLEYTKYMASTLQEIAQRFP
                     DLQNTGILQDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKK
                     VNDDIKNTVDEINRIGEEIATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAV
                     ASKNEINQDNRLDTTITDPGHQYNLSIEGFSIVDGINFHPLKLDYDDKNKSYSIYYET
                     PDEKVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINET
                     NNLYASSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITID
                     VNTTMNDIMRQINANTDDNDNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVA
                     IEDKGTNFAGAFSIGGFFSGTDASDMKVKDSILNDPSTVRASSNGVDSGNDMANKIIQ
                     LQYKKVNFYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQS
                     KSGVNTNEELAALIQYQSSYGAAAKIVSTVDQMLDTLLGLKS"
     gene            6149..6913
                     /locus_tag="RJ259_001182"
     CDS             6149..6913
                     /locus_tag="RJ259_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HDV7366886.1"
                     /translation="MKNFIHLKAKLDFLANQKNTNHSLFETPDPLQIAKIHNDEFIAL
                     ICALFAYGNAKNIVNFLKKLDFSLLNLQEKQIKKELKNLKYRFQNEKDIQEIFITLSR
                     LKNEISLYELFYQAYQERENTTDAILAFMQKIKTLNSYSSYGYDFFFGKIWQNTPTSP
                     LKRYNMYLRWMVRKDELDLGLFTKIHTKDLLIPLDTHAHKISLTLGLLKRKIYDYKSV
                     LELTQNLKKLDANDPIKYDFALYRLGQSKEIDKFKE"
     gene            6917..7681
                     /locus_tag="RJ259_001183"
     CDS             6917..7681
                     /locus_tag="RJ259_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HDV7366887.1"
                     /translation="MGFEHLNTIYYFILFFVALFAGFIDSIVGGGGLITLPALIACGI
                     PAHLSLATNKLQSVFGSFTATLTYFKSTTLPRLAWGVFFTALGAAIGSYSVLFVKDEQ
                     LKLIILIFLTLTFLYTALRPNLGKHESEPKIKNIKIFHLICGLTLGFYDGFLGPGTGS
                     FWIFACVMLLGFNMRKASINTKILNFTSNIIALAIFLWQYELLWAVGLLMGVGQVLGA
                     YLGSKLVLKTNGKFIKTLFLIVVGATIIKVAWDYFS"
     gene            complement(7674..8855)
                     /locus_tag="RJ259_001184"
     CDS             complement(7674..8855)
                     /locus_tag="RJ259_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HDV7366888.1"
                     /translation="MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEI
                     QKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRELYFMHSCKIMKKILDNLILAQN
                     LNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
                     LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFV
                     IFIVMLILAYKNFHSFAFSCDFLFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISK
                     AFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSLVFSMLSVAMKSGRL
                     EVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNF
                     N"
     gene            complement(8852..10411)
                     /locus_tag="RJ259_001185"
     CDS             complement(8852..10411)
                     /locus_tag="RJ259_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HDV7366889.1"
                     /translation="MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFNKLANFCNLH
                     FVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMIIRSKPCSLELLEQVKTFMICEK
                     IDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
                     LSFHASDIHIEARNNDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRK
                     TQDGSFELDFENERYDFRVSCLPLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILK
                     KILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDPIEYKIPLVQQILLN
                     SKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALST
                     IDRLLDMQAKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERC
                     HHSGFFGRELIAECLEINEDLACAIRENQDKTILMELAKKYGFQTMFEQGLKKAKEGL
                     TSIDELLRVVR"
     gene            complement(10401..10868)
                     /locus_tag="RJ259_001186"
     CDS             complement(10401..10868)
                     /locus_tag="RJ259_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009882975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HDV7366890.1"
                     /translation="MQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISREKLYK
                     ELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKT
                     IFWALKANELDKQKQDSWLIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK"
BASE COUNT         4127 a         1684 c         1563 g         3502 t
ORIGIN      
        1 aagaattttt agatttgata aaactaagga ttatgaggct tattataaac cttatattta
       61 tgataattat gaaaattttg caagttttta tgatctgctt ttgcaagttc aaaatgatga
      121 tatttatttt gattttgata aagatgaaga tacttacata gttgtaaata agcaaatcat
      181 accacttttt acacctttag aaaaaatagc aaaagaattt gattttaatc tttgtatcga
      241 gcctttaagt acaaaaagag ctattaaaga tcttatcatc gataaaaatg attttttaga
      301 caaatacaaa tatcttgaaa aatttggcga tgaagaggat aaaaagcttt atgcaaaata
      361 tgattattta tattatgcaa ctgaaatttt agactatctt cctgaatata tgggcgatgg
      421 agtgttttat ttggcttcaa aaatgataga aaaatatcct gaaaaaaaga tagaaatttt
      481 aaaaactcta gcagataaag aaaagggtat tttttatcat cttgaaagca aaaatgaaat
      541 tttagaaaca acgatcaaaa acctacaaaa tgaaatttta aatttagggc tttttgataa
      601 aaatatttta cactttgatt tacctaaaac caatgctttt gataatgaga tcaaagaact
      661 taaagaaatt aaacataatt ttaaagattt caatatagct ttttatggtt ttaatgcttg
      721 cgatacttta aaatccaaac ttaaggctaa atttatttcc tatgaaaaca gtataaaaaa
      781 taatggcttt agcttgctta atctaaatcc tacgctaagc tataaaatag ccgcagatat
      841 tgttttggac gcttatgata gcggggctga ttttatggta gtaaaagaag aaaaagattt
      901 ttatcttttt gatacttgtg ctaaaaaact tatgcaaaca agcaaaagag attttgaaga
      961 cttttatatt ttgagccgtt ttgagttttt agcccttatc gaaggcatac aagctccatc
     1021 attaaaaaat cacactttaa aggttagttt gatatgaaaa tctctttaga atgcaaagat
     1081 ctcatcatag aaaaaacttt agaacttttt ttaaaagatc atttggtaat gaaaaaaaat
     1141 tgtgatttca tcattagcga tgaaaaaatt cataccgcaa aacccttatt tatcatctct
     1201 aaaaactctc catttttaag cataccattt agcaaagaaa ccttgtttga gtctttaaat
     1261 gaatttgaca atgccttaaa agcagcagct ttgcaacttg cacttgaaca aaaaagactg
     1321 cttgaagaaa aaattgacgc tattgctttg gaatttaaaa aagattatga aaataaaatc
     1381 gatcttgcca taaaagatct taaaaacaaa ctcgtaaaag cacttaatga tgaatgatga
     1441 atttataagc gttaaagact tttttaatca caatgaaaaa agaaaaaaat ttcttcaaaa
     1501 acaagaaatt aaacctccta aagaaaaaac aaaaaaaact aaagaaacaa agctttatac
     1561 aaatatagaa agtggtaaat acaaagggaa aaaactactt ttacctagtc ttacaacaac
     1621 aagaagtact aaaagcatag tcaaaagttg tgtttttaat gtaataagag aagatttaag
     1681 aagtaaaatt ttcattgaag cctttggcgg aagtgcttta atagcggctg aagcactaag
     1741 taattatgct ttaaaagctt atgctataga acttgatata aaagcttata aaattgcttt
     1801 agaaaatgct aaaaacatag atccaaattt agaagtgatc catgcaaata cttttgaaat
     1861 tttacctaaa ctcatagaaa attcaaaaaa tgaaatcatc ttatatcttg acccaccttt
     1921 tgatatcaga gaaggtttta gtgatattta tgaaaaaatt tatcattttt tagaaaattt
     1981 agatttaaag actttaaatt taatcatttt tgaataccac tcaaccataa aaactcccga
     2041 aaaaatccaa aattttcaaa aagttaaaga aaagaaattt ggatcaacta gcttaagttt
     2101 ttactcttct taactcactt ggaacacttt ttgcttgatc tatcatcaac aatagattaa
     2161 aggaagaatc catgagagtt ttaacgatat ttttactctt tatgacaagc atttttgcag
     2221 tgcaaatcaa ggatgtagca aatactgtag gtgtaagaga taaccaactt ataggttatg
     2281 gacttgttgt agggcttaat ggaagcggcg atggaacaag ctctaaattt acactacaat
     2341 ctatctcaaa ccttttgcaa ggtatgaata tcaaagtaga tcctaatgat atcaaatcaa
     2401 aaaataccgc agctgttatg gttacagcca aacttccagc ctttgcaaaa agcggagata
     2461 aacttgatat taccgtttca tctatgggtg atgcaaaatc tttacaaggt ggaacacttt
     2521 tactgactgc acttcgtggg attgatggtg aaatttatgc tatagcacaa ggctctatct
     2581 caacaggagg tttaacacct agaccaggag gaacaggttc tcactcaact gctgcaactg
     2641 taatgggcgg agctaatgta gaaagagaaa ttccacaaaa ttttagccaa aacaatgatc
     2701 taaccttaag tttaaaagta gcggatttta aaaccgcaaa caatatagaa agagttttaa
     2761 atactgtctt tggcgaagaa gtagctaaag ccatcgactc tcgcacagta aaactcaaaa
     2821 aacctgaaga tctttcaaat gttgatttta tggcaagagt tttagaacaa gatatagctt
     2881 ataaaccaca aagcaaagtt atcatcgatg aaagaacagg aacagtgatt gctggagttg
     2941 atgtagaggt agaacctgtt ttaatcactc ataaagatat cactataaaa atagatccaa
     3001 acaataacgc agtagctaat caaaatgaaa tcgatatgaa agatggtggt tttgtagatc
     3061 caagttcaaa taccttaaga atcaacaatg caaaaagcac agttgcaaat atagctagaa
     3121 tgcttaacaa acttggagca accccaaatg acattattgc tattatggaa aatttaaagc
     3181 gcgcaggtgc aattaacgcg gatttggaga tcatctaatg aaagtggata attttttaaa
     3241 tacttatagt atgaatagcg ctttacttga tcgtgcagcc aaagcaagaa gtttagaatc
     3301 aagcatcaaa ataaatgaca atgatatagt tacaaagagc aaagaagata aagccttaaa
     3361 agaacaaacc aatgcttttg aggcattttt tttaaagcaa gttttagatg tatctttaaa
     3421 aagtcaaaat tcactctttg gaaaagatgc cagcgatgaa atatactctt ccatgtataa
     3481 tgataccatg agtaaagctt taagtggagg tatgggtttt tcaaaattat tatacgattt
     3541 tttaaaagaa aggggttaag ttttttaaat ttaggtcgat atggtttgta gaggattata
     3601 actaagatca aggaggcaga aatgatcaat cctatacaac aaagttatgt ggcaaatacc
     3661 gcattaaata caaatagaat agataaagaa actaaaacaa acgatactca aaaaacggaa
     3721 aatgataaag cgagtaaaat cgcagagcag attaaaaacg gtacttataa aatcgataca
     3781 aaagctacag ctgctgcgat tgctgactct ttaatctaaa actttcattc tccttttttt
     3841 tgagagagaa aaggagaaaa tatgcttaaa caaagacttg atgaagtaaa tgctatctta
     3901 gcaaaactta ttgctttaac cgaagaagat atagaaaata tcaaagtggc taaacatgag
     3961 agtgtaacgc caagtgtaga agaaaaaaac aaacttatcg cggaatttat tacagctaaa
     4021 aaacaacttg atgttgcctt ggttgagcta aataatagct ctacaaaagg gcttagtgaa
     4081 ctcttagatg atgaagataa acaaaaacta gatctactta aaaaaaatct tcaaaacctt
     4141 catagtaaaa acaaagagta tgctaaattt gttcttattg tcaaagattt tcttgatggc
     4201 ttagtaaata aaatgtttga tatcaatgat ggaacaaata atgcttatgg agataaaaag
     4261 acaaatccag agtcaatttt caagatcaat gtataaggat ttataatggg tatttttgga
     4321 acattataca caggtgttac aggcttaaag gcaagcgaag ttcaaatcgc aacaactgga
     4381 aataatatct caaatgctaa tgcaactttt tatacacgcc aaagagtggt gcaaactaca
     4441 aatggatata ttacaacagg tggagttcaa gtaggcacag gaactgctgt agaaagtata
     4501 gtgcgtttgc atgatgagta ttcttactat aaattaaaag gtgcatctac tcaactagaa
     4561 tatactaaat atatggcttc cactttacaa gaaattgcgc agcgttttcc cgacttacaa
     4621 aatactggaa ttttgcaaga tttagaaaat tataacaaag cttggaatga ttttgcatct
     4681 aaccccaacg aaaatgccac aaaaatagcc cttgtaaaag cttctcagac cttaacagaa
     4741 agcgttaata acacttttgc aaccttagat aaaatccaaa aaaaagtaaa tgatgatatt
     4801 aaaaatacag ttgatgagat taatagaatt ggtgaagaaa ttgctactat aaataaacaa
     4861 atttatggac aagaagcctt accaacagaa cacgcaaatg aacttaggga tagaagagat
     4921 gaacttgagc ttactctttc aaagctagtt agtgcagttg caagcaaaaa tgaaatcaat
     4981 caagacaatc gccttgatac aaccatcact gatccaggac atcaatacaa tctaagtata
     5041 gaaggtttta gtatagtaga tggaataaat tttcatcctt taaagcttga ttatgatgat
     5101 aaaaataaat cttatagcat ttattatgaa actcctgatg aaaaagttcg cgatcttact
     5161 gcaaaaatta gcggtggaca gcttggtgct caacttgact tacgcggtag aaactatagc
     5221 aaaagcgaag gaaaatatga agatggaatt atccaaggtt atatggattc tttagatact
     5281 tttgctaaga ccatgatcaa tgaaactaac aatctttatg caagttctgc gaaaagttct
     5341 gttacttctg attatctatc tgggcttaag ggagatattc ctttagttaa ttacgataga
     5401 accatacaac caggaagttt tgatatagtc atttatgatg ataaaggcga taaaaaactc
     5461 accaaaacca tcaccataga tgtaaataca accatgaatg atatcatgcg ccaaatcaat
     5521 gctaatacag atgataatga caataaaaat tcaaacgatg atgttgatga tcatatcaat
     5581 gcaagtttta gctacgatgc aaaaactgga gatggtttat ttcaaatcaa tgcaaaatca
     5641 ggttttaagg tagccattga agataagggc acaaatttcg caggtgcgtt tagcataggt
     5701 ggttttttca gcggaactga tgcaagtgac atgaaagtaa aagattccat cttaaatgat
     5761 ccaagtacag taagagcaag ctcaaatgga gttgatagtg gtaatgacat ggcaaataaa
     5821 atcatccaac ttcaatataa aaaagttaat ttttataatg aagatggcac tatcgataat
     5881 cttactatgg aagaatatta ccgcaaactt acaggtaaaa tagcctcaga tggtgaaaat
     5941 aacaatgtcg tcaattcaag caatgaaact ctttataatt ctgtttatag cgagtaccaa
     6001 tctaaaagtg gcgtaaatac aaatgaagaa ttagccgccc ttatacaata tcaatcaagt
     6061 tacggtgcag cagcaaaaat cgtctcaacc gtagatcaaa tgcttgatac cttactaggg
     6121 cttaaatctt aagctctagt aatatcaaat gaaaaatttt atccatctta aagctaagct
     6181 cgatttttta gccaatcaaa aaaataccaa tcattccctt tttgaaactc cagatccttt
     6241 gcaaattgct aaaattcaca atgatgaatt tattgcctta atttgtgctt tatttgccta
     6301 tggaaatgct aaaaatatag taaattttct aaagaaactt gatttttctt tattaaacct
     6361 tcaagaaaaa caaataaaaa aagaacttaa aaatttaaaa taccgcttcc aaaatgaaaa
     6421 agatatacaa gaaattttta tcactctttc aaggctgaaa aatgaaattt cactctacga
     6481 acttttttat caagcctatc aagaaagaga aaataccaca gatgccatct tagcttttat
     6541 gcaaaaaatc aaaaccttaa attcatattc aagttatgga tatgattttt tctttggaaa
     6601 aatttggcaa aacaccccta cttcacctct taaacgctat aatatgtatc taagatggat
     6661 ggttagaaaa gatgaacttg atcttggact ttttaccaaa attcacacca aagatctttt
     6721 aattccactt gatacacatg cacataaaat ttccttgact ttaggacttc taaagcgtaa
     6781 aatatatgat tataaaagtg ttttagaact cacacaaaat ttaaaaaaat tagatgcaaa
     6841 tgatcccata aaatatgact ttgcactcta tcgtttaggg caaagtaagg aaattgacaa
     6901 atttaaggag tgaagaatgg gttttgagca cttaaatacg atttattatt tcatactttt
     6961 ttttgtagct ctttttgctg gttttataga ttctattgta ggtggaggag ggcttattac
     7021 tctaccagca ctcatagcct gtggaattcc tgcgcattta tccttagcaa caaacaaact
     7081 ccaaagcgtc tttggttctt ttacggctac tttaacttat tttaaatcca ccactctacc
     7141 tcgtcttgct tggggtgttt ttttcacagc cttaggagca gctataggaa gttatagtgt
     7201 tctttttgta aaagatgagc aattaaagct tattatctta atctttttaa ctcttacctt
     7261 cttatataca gccttacgtc ccaacttagg caaacacgaa agcgaaccta aaataaaaaa
     7321 tatcaaaatt tttcatttaa tttgtggctt aactttagga ttttatgatg gatttttagg
     7381 gcctggaacg ggttcatttt ggatttttgc ttgtgtgatg ctactaggtt ttaatatgag
     7441 aaaagcgagc attaatacta aaattttaaa tttcacaagc aacatcattg ctcttgctat
     7501 atttttatgg caatatgaac ttttatgggc tgtaggtttg cttatgggtg taggacaagt
     7561 tttaggagct tatttaggct caaaacttgt attaaaaact aatggaaagt ttataaaaac
     7621 tttattttta atcgttgtag gagctactat tattaaagta gcttgggatt attttagtta
     7681 aaattgaccc ctgagctaag ctcccacata ggtaaaaata tacctaaagc caaaaacaaa
     7741 actaaaagcg ctacaaataa agtcatcata ggctctaaaa aaatcaaaaa tctatccatc
     7801 aaattttcgc ttttttgttg ataatatttg gcaatttctt cacttaatac ttcaagtctt
     7861 ccacttttca tcgcaacact aagcatagaa aacaccaaag aatcaaaaat atcaatcttt
     7921 ttaaaagcct gacttaactc aagaccagaa tctataaaac taaaaagttt tttatactga
     7981 aaaattaaaa atttattttc aagccctata atagctaaat caaaagcttt agatattgaa
     8041 attccatttt ttaaaagcaa agaaaaaacc ataaaaaaat aataattttg attataaata
     8101 atcaaacgag aaatcaaagg tacttttaaa aataaaaaat cgcaagaaaa agcaaaagaa
     8161 tgaaaatttt tataagctaa aataagcata acaataaaaa taacaaacaa aaatatgcaa
     8221 aaaattccat agtcatctaa aaaattataa atttctaaca ttacatgcgt gataaaaggc
     8281 aaactcgcgc ctaaattttc aaataaatct ttaaaattag gcactacaaa aagcattaaa
     8341 aacaaaaatg ctccgataat acttaaaaaa accaaagtag gatatctaaa agcctttttt
     8401 aattgttttt gactctctaa gcttttttct cgaagtttag aaatttgact aaacacttca
     8461 ctgatttttc ctgtcttttc agccgtttta atcaaagcta actccgcacg atttaatcca
     8521 aaattagcat tttcaaaagc ttgatttaga ttttgggcta aaattaaatt gtctaatatt
     8581 tttttcataa tcttgcaaga atgcataaaa tataattctc taatcgcttc ttgaacactt
     8641 aatccaactt cacacaacaa agctagctct ttaaaaaaga gtataaaatt ttcatccttt
     8701 aatctctgaa aattagattt ttgaatttct tttatatcaa tgattttcca attctttgat
     8761 aaggcttttg cttgtgctgt atttaaattt tcagctttta tagtttttgt ataattttga
     8821 ttgtttttaa gaaattctac ttcataaaat ttcatcttac aacccttaaa agctcatcta
     8881 tacttgtaag accttctttg gcttttttta aaccttgttc aaacatagtt tgaaagccat
     8941 atttttttgc aagctccatt aaaatcgttt tatcttgatt ttccctaatt gcacaagcta
     9001 aatcttcatt gatctctaag cactcagcga ttaattctct gccaaaaaat ccactatgat
     9061 gacaacgctc acatcctttt ggttcaaaaa attcaccttc aaattcaata taatgttttt
     9121 tgcttttttg cttacaccaa ggacaaagtt ttctaaccaa acgctgtgct ataacaagac
     9181 tcaaagccga tgctatcaag taactttttg cttgcatatc caaaagccta tcaatggtac
     9241 taagagcatc attagtatgc aaggtgctta aaagcaaatg acctgttaaa gaagctttaa
     9301 gtgcaatatc taaactttct tcatcgcgaa tttctcctat catgataata tcaggatctt
     9361 gccttaaaat tgctcttaaa acactattaa actcgactcc aacttttgaa ttgagcaaaa
     9421 tttgctgcac taaaggaatt ttatattcta taggatcttc tgcggaaata atcttttttt
     9481 caatactttt caactcattt aaacacgcgt ataaagttgt gcttttacca ctacctgtag
     9541 gaccggttaa taaaatcatt ccattgggac gatgtaaaat cttttttaaa atttctaaat
     9601 ttttatttcc aagatttagt ttatacaaat ccaaaatttc tttatcatgt tttaaaattc
     9661 ttataacaac actttcgcca taaatcaaag gcaaacatga aacacgaaaa tcatatcttt
     9721 cattttcaaa atctaattca aaacttccat cttgtgtttt tcttgattca gctaaattca
     9781 aacaagctaa aaatttgaca tgaaaaacca aagcttcata aatatccttc tcaaaaatag
     9841 caaattcacg caaaattcca tcaaccctaa acctaatcaa agcatcatta tttcttgcct
     9901 ctatatgaat atcactcgca tgaaaagata aaatttcatg taataaaaaa tcaaaaattt
     9961 gactgatgca actttgatca tctcttttgt gattttcttg ccattcaagt ctaagcttaa
    10021 tgcttaatct tttaatctcc tcttgaatgc gaatttgatt taaaatttta gctatcttta
    10081 attcatcggc aattgcagtg tcgatttttt cacaaatcat aaaagtctta acttgctcta
    10141 aaagctctaa agaacaaggt ttggatctaa taatcataaa gccgtcattg tttttaataa
    10201 gcagaaattt aaattttaaa agtaaagaaa aaggtatacc ttcataaata aaatcattat
    10261 cttcatctaa atcaacaaaa tgtaaattac aaaaatttgc taatttgtta aaaaaatccc
    10321 aagaagtgat attaaattta gtgcaaattt catcaagact tatttcatta tcaatataag
    10381 cttgaaaaat tttatccatt ctactttcca tctaattcca ttaaaccata ataatttata
    10441 taagcatcta aagcactttg agcttctttt tcttcaccta aagctctttt agcctgagca
    10501 aaaatcagcc aagaatcttg tttttgcttg tcaagttcat tggcttttaa agcccaaaat
    10561 attgtctttt gataagcttt aatatcaaaa tacttcttag ctaaatttaa tgccttttca
    10621 tagcttggat tttgataaaa agattttttt aaatcagaaa tatttaaaat tttagaatca
    10681 atttctatct tgctaatatg tgtattttcc tgcaccgctt taacttcttc tagttcttta
    10741 tataactttt ccctagaaat cttatttttt tcttgtaaaa tttgcgcttg aagaatcttt
    10801 tgctccaaat gctttttatg ttcaatagcc tgcaaataaa tatttttttg cttattatat
    10861 ttttgcatta gcacaa
//
LOCUS       DAPIWJ010000057        10801 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.057, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000057 DAPIWJ010000000
VERSION     DAPIWJ010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10801)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10801)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10801
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.057"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            53..982
                     /locus_tag="RJ259_001187"
     CDS             53..982
                     /locus_tag="RJ259_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2860 domain-containing protein"
                     /protein_id="HDV7366891.1"
                     /translation="MKKYLFSCVLASILTQSATAVEFQEGFSGNLSIGVGARDIKSNI
                     STLANSDYLSSHNADNSDSSFIPFIGAELYYGNLIDNDRIFIKNYNGRDISGIALGYE
                     RAYLERFSTSFSVISSLREKAYANPYAIGNREETDVDRYGFKISQLYESGFGKFTTSY
                     LFSKNKYDKDTIAQSSLKREGYYHEIELNYNYSLLNLGLNYDYNDADGKAQSYSRYGF
                     SIGTNLAFANDYIFTPNLNLSKYEAVGTDPIFHKKQDGNIVKLNLKVVKNQFLGYNGL
                     YGFANYGIEKRNSDIGFYDETYQIVLTGIGYKF"
     gene            complement(1030..2358)
                     /locus_tag="RJ259_001188"
     CDS             complement(1030..2358)
                     /locus_tag="RJ259_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HDV7366892.1"
                     /translation="MSSIFSTLSPFRLFVKYAVPNVISMAFISFYYIVDGIFVGKYLG
                     SDALAALALIIPFIMMSFALADMIAIGSAVQISMHLGLGKKNLARKIFSSSMLIIFII
                     SCFIGILEYFLGPVLIDCLNVSDEIKTMTKECMFVFALFAPFTMLSFALDNYLRICGK
                     TAYSMVMNVIIALSNIVLDYIFIVELGWGLFSAALATCLGLVLGGIFGIFPFLFQNLE
                     LKISSLYMNLKIFKNILYNGSSEFFGNISGSLYSIFANFVLLKISDTQAVAAFSIVLY
                     IDSFIIMLIIAIGDAMQPALSYNYAKKDFSRIKAIIKVVFFAGGFLSLFSIVLILIFG
                     ENLITLFTKENNQEFKTFAYTALMLFAFNYFFAWFNVLSGSFLTAFNKASFSLVLSLA
                     QNLFIPLFFLLFLSCFMGLNGVWLSPFFAEFCVLILAWIFLKRIFKDLSL"
     gene            complement(2539..3474)
                     /locus_tag="RJ259_001189"
     CDS             complement(2539..3474)
                     /locus_tag="RJ259_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HDV7366893.1"
                     /translation="MKKIDLIVVGAGPTGIGCAVEAKLKNKEVLILEKSNNICQTLMQ
                     FYKDGKRVDKAYKGCEGTNHGHVPFEDGTKESTIETFQNALKEHNIEVEFGSEVESVK
                     NENGVFLVSTAKGVYECKNIIVAIGRMGKPNKPDYKLPMTLTKIINFNANSVLGNEKI
                     LVVGGGNSAAEYAVDLANSNQVSLCYRKKEFTRLNDINLKDIHEAGNSGKVELKLGID
                     INEVEDDNGKAKVNFTDGTSDIYDRIIYAIGGSTPLDFLQKCGINVDDKGVPLMDENK
                     QSNVKGIFVAGDIATKNGASIVTGLNDAVKILSVL"
     gene            3545..4777
                     /locus_tag="RJ259_001190"
     CDS             3545..4777
                     /locus_tag="RJ259_001190"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HDV7366894.1"
                     /translation="MRNLLENIKKNSQKLLNLTPKDKEKIILKLAQILRENFKIILEA
                     NKKDMANFTKSGAMKDRLLLDEKRILALCEGLEKIAYIEDPIGKISKGWKNYAGLSIQ
                     KMSIPLGLICVIYEARPSLSAEIAALMIKSSNACVFKGGSEAKFTNEAIFTLVNKVLK
                     EFDLQDCFAMFTQRDEILQILAFDDLIDVIIPRGSSNMIQEIANNTKIPLIKQNKGLC
                     HAFVDQSANLDMALKIILNAKCQRVSVCNALETLLIHEKIAKNFISLLIPEFEKFKVK
                     IHAHENALAYFNNSNLKIFKANENTFDTEWLDFALSVKLVKDCDEAIEHINKHSSLHS
                     ETIISNDASNIAKFQRLINSSCIYANASTRFSDGGEFGFGGEVGISTSKLHARGPMGI
                     EDICTYKYIINGEGQIRE"
     gene            4774..5859
                     /locus_tag="RJ259_001191"
     CDS             4774..5859
                     /locus_tag="RJ259_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HDV7366895.1"
                     /translation="MNKIEILKQHFKEIAKLNSSEQVWQMPFFAALGVGIVLGLSVFF
                     GKLNYGLIAMIGALSFLYVPSTPLYHRMAVVMCCSFGIVSSFFLGILTHFLPAIFAFI
                     PIGIMAMGSSILIRYYNIGAPGYFFFVFSCVLGAYSPFEAKDFIFLVGLVFLGAMVAN
                     LMALLYSIVVIYGFKNALPSEIPPREYIGFDAVFVDSLIMGSFVAFSIFIGTFLELER
                     SYWIAISCTAIMQGVTLNSIWIKQIQRIIGTALGVCFAWWLLSKQFHDIELILLMMSL
                     FFIGQFLVNRNYALAMIFFTPYATYLSEAANFMSENADKLILARLIDVVIGSILGLLG
                     GFVIYKPYLRVHFERIAKYIFRIKQKA"
     gene            complement(5856..6653)
                     /locus_tag="RJ259_001192"
     CDS             complement(5856..6653)
                     /locus_tag="RJ259_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDV7366896.1"
                     /translation="MKIDTHAHIFLKKLNTVANARYKPDYDASFKDYKANLDHYDFNK
                     GVLVQPSFLGIDNEFLLQSIEKDENIKAIVVVDENIKFDELKKLKERKACGVRLNLIG
                     KELPNFKSMVWTQFFENLSKLKMQIEIQRDLDNNLVDIVENLIPYGCNIVIDHLARAN
                     ANLTNLEDLICLKNSRIFFKISGFYRAKIDYANNEQAVKFAKKIYEILKEHFPLSNFV
                     FGSDWPHTNFEANINFSSALVAFNEVVVSKKEQEQILGDNACALFGF"
     gene            complement(6664..7956)
                     /locus_tag="RJ259_001193"
     CDS             complement(6664..7956)
                     /locus_tag="RJ259_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HDV7366897.1"
                     /translation="MIMVFLIISSIIVAIILGYITRHNVGIFAMIFAYIIGAFFMDLA
                     PKKIIAFWPISIFFVIFAVSLFYNFATVNGTLEKLAGHLMYRFANHPYLLPFVIFVVS
                     AIIAALGAGFYTVLAFMAPLTFLLCDKIGLSKIAGAMAINYGALGGANFITSQSGIIF
                     RGLMENSGIEANEAFANSSIIFAFTIILPIVVLSFFVFNAFKNNIKISVISKPDPFDY
                     KQKTTLILMFMMIVVVLIFPVLNIIFPHNETISYFNKKIDIAMIAMIFVAIALFLKLA
                     DEKQVVALIPWGTLIMICGVGMLISIAVEAGAIKLFSDLVENEINVIFIPLIMCAIAA
                     FMSLFSSTLGVVTPALFPIVPSIAASSGLSEALLFSCIVVGAQASAISPFSSGGSLIL
                     GSCPDKYKEKLFKDLLIKAVPIGFIAAILATIIMSFIL"
     gene            complement(8075..9079)
                     /locus_tag="RJ259_001194"
     CDS             complement(8075..9079)
                     /locus_tag="RJ259_001194"
                     /inference="COORDINATES: protein motif:HMM:NF022646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HDV7366898.1"
                     /translation="MEKFIKQFSFIALENIFRELPNKITHSFNDINDIKPPKLMYPIF
                     YGSYDWHSSVHSHWLLVKILKDFSHFAPKDEIIKALDSQFSKEKAEGELKYLQNPAHK
                     GFERPYGWGWFLKLTLEINLLTKENDKAEIWAKNLEGIADFFVKEFKEFLPKMDYPIR
                     VGTHFNSSFALYFALEYARFKKDQELEYCIIQSAKKWFLNDKNMQALEPCGDEFLSPV
                     LMEAVLLSAVLHKNDFVKFFKAYLPNLEAKEPATLFTPVSVSDRSDGKIAHLDGLNLS
                     RAWCFKILSNFCDENLKILLRNNATEHFDKAIAHIEDDYLGSHWLGSFALLALDVDIL
                     "
     gene            complement(9089..10042)
                     /locus_tag="RJ259_001195"
     CDS             complement(9089..10042)
                     /locus_tag="RJ259_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HDV7366899.1"
                     /translation="MISLDLLYYIVGILFLVFGILSFSNQAKDIKSRISGGVFWISYS
                     FTFLLAGVLPHFVMGCIVILLALIAGFNLLKPAKIEVSKEEKEYEIKHANIYKNKLFI
                     PALMVPLITLIGTFLFPYLSFFENKNATLMALIIGIIISSVVACFMFKASPKRAVKDA
                     AHTMDHISWAALLPQILATLGVVFVSTGMGDQVSKLLSSYISLDNAFIAVAVYCIAMA
                     LFTIVMGNAFAAFPVITAAIALPILIIQMHANPAIIGAIGMLSGFCGTLMTPMAANFN
                     IVPAALLNLDDKNGVIKAQFMSGLVLLVANIFLMYFLAFRF"
     gene            complement(10029..10721)
                     /locus_tag="RJ259_001196"
     CDS             complement(10029..10721)
                     /locus_tag="RJ259_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HDV7366900.1"
                     /translation="MEWLLLASIPLIVLGFALKINPFLVVTSVGIYAGLVSGFDFVKV
                     VSDIGKSFVDNRYVAIIWLILPLLAVLERKGLREQAKNLISKIKVASTGRILMCYFVF
                     RQVTAALGLLSLGGHAQMIRPLIAPMAEAAAKLKFKNLTHKDSQKIKAFSAGTDNVAV
                     FFGEDIFIAVHSILFIKAFYESNGIIVEPLHLSVWAIPTGILALIIHCSRLYLFDKRL
                     EKTYKGLSDDKS"
BASE COUNT         4045 a         1799 c         1440 g         3517 t
ORIGIN      
        1 acaattataa atgtaattta attacaaaca acaaacattt caaggagaac atttgaaaaa
       61 atatttattt tcctgtgttt tagcttccat tttaacccaa tcagctacgg ctgtagaatt
      121 tcaagaaggt tttagtggaa atttaagcat aggtgtgggt gcaagggata ttaaaagtaa
      181 tatttcaacc ttggcaaaca gtgattatct aagcagtcac aatgctgata attcagactc
      241 ctctttcatt ccttttatcg gtgcagaact ttactatggt aatcttatag ataatgatag
      301 aatttttatt aaaaactaca atggaagaga tatcagcggt atagctttag gctacgaaag
      361 agcttattta gagcgtttta gcacttcttt ttctgtaatt tcctctttaa gagaaaaagc
      421 ttatgcaaat ccttatgcaa taggaaatag agaagaaact gatgttgata gatatggttt
      481 taaaatctct caactttatg aaagtggttt tgggaaattt accacttcat atttatttag
      541 caaaaacaaa tatgataaag acactatcgc acaaagctct ttaaaaaggg agggatatta
      601 tcacgaaatt gaattaaact ataattatag cttattaaac ctagggttaa attatgatta
      661 caatgatgca gacggaaaag ctcaaagcta ttcaagatat ggttttagta taggaacaaa
      721 tttggctttt gctaatgatt acatcttcac tccaaattta aatcttagca aatatgaagc
      781 agtaggaact gatcctatct tccacaaaaa acaagatggt aatatagtta agcttaattt
      841 aaaagttgtt aaaaatcaat ttttgggtta taacggactt tatggttttg caaattatgg
      901 catagaaaaa agaaatagcg atataggatt ttatgatgaa acctatcaaa ttgtcctaac
      961 tggtatagga tataaattct aaaaattaca aaaaagctcc tttgataaaa tttaaaaaag
     1021 atctatctcc tataaagata gatctttaaa aattctttta agaaaaatcc aagctaaaat
     1081 caaaacacaa aattcagcaa aaaatggact tagccatact ccatttaaac ccataaaaca
     1141 agataaaaac aaaagaaaaa acaaaggtat aaataaattt tgcgccaaac ttaaaaccaa
     1201 agaaaagctt gccttattaa aagctgtcaa aaaagaacca cttagaacat taaaccatgc
     1261 aaaaaaataa ttaaaagcaa aaagcatcaa agctgtataa gcaaaagttt taaattcttg
     1321 attgttttct tttgtaaaaa gcgtgattaa attttctcca aatatcaata taagcactat
     1381 agagaataaa gataaaaatc cccctgcaaa aaataccact tttataatag ctttgattct
     1441 tgaaaaatct tttttagcat agttgtaact aagcgcaggc tgcattgcat cacctatagc
     1501 aataataagc attataataa aactatcaat atataaaact atagaaaagg ctgccacggc
     1561 ttgagtatca gaaattttta ataaaacaaa atttgcaaaa atactataca aagatcctga
     1621 aatattgcca aaaaactcac tgcttccgtt ataaagaata tttttaaaaa tttttaaatt
     1681 catatatagg ctcgaaattt taagctctaa attttgaaac aagaaaggaa aaattccaaa
     1741 aataccacct aaaacaagtc ccaaacaagt tgcaagagca gctgaaaata agccccaacc
     1801 caactcgact ataaaaatat aatcaagcac tatattgctt aatgctataa tcacattcat
     1861 taccatacta taagcagttt ttccgcaaat tcttaaataa ttatccaaag caaaagaaag
     1921 catagtaaag ggtgcaaaca aagcaaaaac aaacatacat tctttagtca tcgttttaat
     1981 ctcatcgcta acatttaaac aatcaatcaa aacaggtcct aaaaaatact ccaaaattcc
     2041 gataaaacaa gagattataa agataatcaa catacttgag ctaaatatct ttctagctaa
     2101 attcttcttg cctaaaccta aatgcataga aatttgcact gctgatccta tggctatcat
     2161 atcagccaaa gcaaaagaca tcatgataaa gggaataatc aaggctagtg ccgctaaagc
     2221 atcacttcct agatattttc caacaaaaat tccatcaact atataataaa aagaaataaa
     2281 agccatgctt ataacatttg gcacggcata ttttacaaaa agcctaaaag ggcttaaggt
     2341 gctaaaaata cttgacataa taatccttaa aatatttaaa attaaaaata ttttaaaccg
     2401 ctaataaaat gccaaaagtc ctagtatgta agaatttaaa taaagtaatt tcgcaataag
     2461 tttattaata tttattttat tttgcatatg aattttctag attaaactaa aataaaaatt
     2521 tagcccaaag gctaaatttt aaagcacaga aagaattttc acagcgtcat ttaaccctgt
     2581 aactatactt gctccatttt tagtagcaat atctcctgct acaaagatgc ctttaacatt
     2641 gctttgtttg ttttcatcca ttaaaggcac gcctttatca tcaacattaa tcccacattt
     2701 ttgtaaaaaa tcaagtggag tagaaccacc aatagcataa atgattctat cataaatatc
     2761 gcttgtacca tcggtaaaat ttactttagc tttgccatta tcatcttcta cttcattaat
     2821 gtcaattcct agttttaact ctaccttacc cgaatttcca gcttcgtgaa tatctttaag
     2881 atttatatca tttaatcttg taaattcttt tttacgataa caaaggctaa cttgatttga
     2941 atttgccaaa tccacagcgt attctgctgc tgaatttccg ccacctacaa caagaatttt
     3001 ttcatttccc aaaactgaat tggcattaaa attaatgatt tttgttaaag tcataggaag
     3061 tttgtaatca ggtttattag gtttacccat tctacctata gcaacaataa tgtttttaca
     3121 ctcataaaca cctttagctg tacttactaa aaaaactcca ttttcatttt taacgctctc
     3181 aacttcagaa ccaaattcaa cttctatatt gtgctctttt aaagcgtttt gaaaagtttc
     3241 tatagtgctt tctttggtgc catcttcaaa aggaacatgt ccgtgattgg ttccttcgca
     3301 tcccttataa gctttatcta ctcttttgcc atccttataa aattgcatta aagtttgaca
     3361 aatgttattt gatttttcta gtatcaaaac ttctttgttt ttaagcttgg cttcaactgc
     3421 acagcctatc cctgttggac ctgcacctac tacaattaaa tctatttttt tcatttatat
     3481 ttacctttca attctaaatt tttttgtata atttatcaag ttttttgtaa ataaaggatt
     3541 aaaaatgcga aatttgcttg aaaatattaa gaaaaattct caaaaactac ttaacttaac
     3601 acccaaagat aaagaaaaaa ttattctaaa attagctcaa attttaagag aaaatttcaa
     3661 aattatccta gaagcaaata aaaaagatat ggcaaatttc acaaaaagcg gagcaatgaa
     3721 agataggctt ttgttagatg aaaaacgtat tttagctctt tgcgaaggcc tagaaaaaat
     3781 cgcttacatc gaagatccta taggcaaaat ttctaaaggc tggaaaaatt atgcgggttt
     3841 gagcatacaa aagatgagta ttcctttagg actcatttgt gttatttacg aagcaaggcc
     3901 tagtcttagc gctgaaatcg cagctttaat gataaaaagt tccaatgctt gtgtatttaa
     3961 aggcggaagt gaagcaaaat ttacaaatga ggctatattt actcttgtta ataaagtact
     4021 taaggaattt gatttgcaag attgttttgc tatgtttacc caaagagatg aaatcttgca
     4081 aattctagcc tttgatgatt taatcgatgt gatcatacct cgcggaagtt caaatatgat
     4141 acaagaaatt gcaaacaata ccaaaattcc tctcattaag caaaataaag gcttgtgtca
     4201 tgcttttgta gatcaaagtg ctaacttaga tatggcttta aaaataatcc ttaatgcaaa
     4261 gtgtcaaaga gtaagtgttt gtaacgcttt agaaacgctt ttaatccatg aaaaaattgc
     4321 taaaaatttt ataagtcttt taatacctga atttgaaaaa tttaaggtaa aaattcacgc
     4381 ccatgaaaat gctttggctt attttaacaa ctcaaattta aaaattttta aagcaaatga
     4441 aaataccttt gatacagaat ggcttgattt tgctttaagt gtaaaattag taaaagattg
     4501 cgatgaagct atagagcata tcaataaaca cagctccttg cattctgaaa ccattatctc
     4561 aaatgatgct tcaaatatcg ctaaatttca acgccttata aactcatctt gtatttatgc
     4621 taatgcttca acgcgtttta gcgatggagg agaatttggc tttggtggag aagttggaat
     4681 ttcaaccagc aaattgcatg caagaggtcc tatggggatt gaagatattt gcacttataa
     4741 atatataatc aatggggaag gacaaattcg agagtgaata aaatagaaat actaaagcaa
     4801 cactttaaag aaattgctaa attaaattca agcgaacaag tttggcaaat gccttttttt
     4861 gcggctttag gcgtaggtat agttttagga cttagtgtat tttttggaaa attaaactat
     4921 ggactcattg ccatgatagg agctttgtct tttttatatg ttccaagcac tcctttatat
     4981 catagaatgg ctgttgtgat gtgctgttct tttggcatag tttctagttt tttcttagga
     5041 attttaactc attttttgcc tgcaattttt gccttcatcc ctataggaat tatggccatg
     5101 ggaagttcta ttttaattag atactataac attggtgcac ctggatattt tttctttgta
     5161 ttttcttgtg ttttaggagc ctattctcct tttgaagcta aggattttat ctttttagta
     5221 ggtcttgttt ttcttggagc aatggtagct aatttaatgg ctttgttata ttctatcgtt
     5281 gtgatttatg gatttaaaaa tgctttacct agcgaaattc cacctagaga atacataggt
     5341 tttgatgcag tttttgtgga ttctttgatc atgggttctt ttgtggcttt ttctatattt
     5401 ataggaactt ttttagaact tgaaagaagt tattggatag ccatttcttg cacagctatt
     5461 atgcaaggtg taactttaaa ttctatatgg attaaacaaa ttcaacgcat cataggaacg
     5521 gccttaggag tatgttttgc atggtggctt ttatctaaac aatttcacga tatagagctt
     5581 attttactta tgatgtcttt gttttttata ggacaatttt tagtcaatcg aaactatgct
     5641 ttagctatga ttttctttac tccttatgct acttatcttt cggaagcagc taattttatg
     5701 agtgaaaatg cagataaatt aatactcgct cgtttaattg atgttgtaat aggaagcatt
     5761 ttagggcttt taggtggttt tgtgatttac aaaccttatc taagagtgca ttttgaacgc
     5821 attgcaaaat acatctttag gataaaacaa aaagcttaaa agccaaataa agcacaagca
     5881 ttatccccta aaatttgctc ttgttctttt ttagatacga caacttcatt aaaagccact
     5941 agagccgatg aaaaattaat atttgcttca aaatttgtat gtggccaatc gcttccaaaa
     6001 acaaaattgc taagtggaaa atgttctttt aaaatttcat atattttctt tgcaaatttt
     6061 acagcttgtt cattattagc atagtctatt tttgctctat aaaaaccgct aattttaaaa
     6121 aatattctag agttttttaa gcaaattaaa tcctctaaat ttgttaagtt tgcattagct
     6181 cttgctaaat gatcgataac aatattacaa ccataaggaa ttaaattttc aacaatatca
     6241 acaagattat tatctaaatc tctttgaatt tctatttgca ttttaagctt acttaaattt
     6301 tcaaaaaatt gagtccaaac catactttta aaatttggta attctttgcc aattaaattt
     6361 aatctaactc cacaagcttt tctttctttt agttttttaa gctcatcaaa tttaatattt
     6421 tcatcaacca caactatagc ttttatattt tcatcttttt ctatactctg aagcaaaaat
     6481 tcattatcaa tacctaaaaa acttggctga actaaaaccc ctttattaaa atcataatga
     6541 tctaaatttg ctttataatc tttaaaacta gcgtcataat caggcttata tcttgcattt
     6601 gcaaccgtat ttaacttttt caaaaatata tgtgcgtgag tatcaatctt cattaaatta
     6661 tccttataaa ataaaactca ttataatagt agctaaaatc gccgctataa atcctatagg
     6721 cacagcttta ataagtaaat ctttaaataa tttttcctta tatttatcag ggcaagatcc
     6781 taaaattaga cttcctccag aagaaaaagg agaaatagca gaagcttgag cccctacaac
     6841 aatacaagaa aaaagcaatg cctcgcttaa tccactgctt gcagcaatgc ttggaactat
     6901 aggaaaaagc gctggagtaa ccacacccaa agtacttgaa aaaagcgaca taaaagctgc
     6961 aatagcacac attattaacg gaataaaaat cacattgatc tcattttcta caagatctga
     7021 aaataatttt atagcccctg cttcaactgc tatgctaatt aacatcccta ctccacaaat
     7081 cattatcaag gttccccaag gaattaaagc aacaacttgt ttctcatcgg ccaattttaa
     7141 aaataaagca atggcaacaa aaatcatggc tatcatggct atatctattt ttttattaaa
     7201 ataactaatt gtctcattat gtggaaaaat aatatttagc acaggaaaga ttaaaacaac
     7261 aacaatcatc ataaacatga gaattaaagt agttttttgt ttataatcaa atggatcagg
     7321 ttttgaaata acactaattt ttatattatt tttaaaagca ttaaacacaa aaaaagataa
     7381 taccacaata ggcaagatta tagtaaaagc aaaaataata ctagaatttg caaaagcttc
     7441 atttgcttca atgcctgaat tttccatcaa tcctcgaaaa ataatcccgc tttgagaagt
     7501 tataaaattt gctcctccca aagcaccata atttatagcc atagctccag caattttgct
     7561 taaaccgatt ttatcgcaaa gtaaaaaagt aagtggtgcc ataaaagcta aaactgtata
     7621 aaaacctgct cctaaagcag ctataatagc actaaccaca aaaataacaa aaggaagcaa
     7681 ataaggatga ttagcaaaac gatacatcaa atgtccagct aatttttcaa gagttccatt
     7741 tacggttgca aaattataaa acaatgagac agcaaaaata acaaaaaata tagaaatagg
     7801 ccaaaaagct atgatttttt taggagctaa atccataaaa aaagctccta taatataagc
     7861 aaaaatcata gcaaaaattc caacattatg tctagtaata tagcccaaaa taatagccac
     7921 tataatacta gagatgatta aaaaaaccat tatcatcctt taaaatatta tagggcttat
     7981 aatatcaaaa aatatatttt tcaaagcata aaaacaaaat ctaaatttaa aaaatatcta
     8041 tttagcaaca aatttactca tcttatgaaa ttttttataa aatatccaca tccagagcaa
     8101 gcaaagcaaa gcttcctagc caatgcgacc caagataatc atcttctata tgagctatag
     8161 ctttatcaaa atgctctgta gcattgtttc ttaaaagaat ttttaaattt tcatcgcaaa
     8221 aatttgaaag tattttaaaa caccaagcac gacttaaatt taacccatct aaatgtgcta
     8281 ttttaccatc gctcctatca ctcacactca caggggtaaa taaagttgca ggctcttttg
     8341 cttctaaatt tggcaaatat gctttaaaaa attttacaaa atcattttta tgtaaaacag
     8401 cacttaaaag caccgcttcc atcaaaacag gagataaaaa ctcatctcca caaggctcta
     8461 aagcttgcat atttttatca tttaaaaacc actttttagc actttggatg atgcaatact
     8521 ccaattcttg atctttttta aatcttgcat attctaaagc aaaatacaaa gcaaaagagc
     8581 tattaaaatg ggttccaact cgtataggat aatccatctt aggtaaaaac tccttaaatt
     8641 ctttaacaaa gaaatcagct atgccttcta aatttttagc ccaaatttca gctttgtcat
     8701 tttctttagt aagtaaattt atctccaaag tcagttttaa aaaccatccc catccataag
     8761 gtctttcaaa acctttgtgt gcagggtttt gaagatattt aagctctcct tctgcttttt
     8821 ctttgctaaa ttgagaatct agagctttga tgatttcatc ctttggagca aaatgagaaa
     8881 aatcttttaa aattttcacc aaaagccagt gagaatgcac gctagaatgc caatcataag
     8941 aaccataaaa tataggatac ataagttttg gcggtttaat atcattgata tcattaaaag
     9001 aatgtgtaat tttatttggc aattctctaa aaatattttc tagtgcaata aagctaaatt
     9061 gttttataaa tttttccatt gtttctcctt aaaatctaaa agctaaaaaa tacattaaaa
     9121 agatattagc cacaagcaaa acaagtcctg acataaactg ggctttaatt acgccatttt
     9181 tatcatccaa atttaaaagt gccgcaggaa ctatattaaa atttgcagcc ataggcgtca
     9241 ttaaagttcc gcaaaatcca ctaagcattc caatcgctcc tataatagca ggatttgcat
     9301 gcatttgtat gattaaaatc ggcaaagcaa tagcagcagt aatcacagga aaagctgcaa
     9361 aagcattgcc cattactata gtaaaaagcg ccatagcgat acaatacaca gctactgcaa
     9421 taaaagcatt atctaaacta atataactag ataaaagttt agatacttga tcgcccattc
     9481 ctgtagaaac aaaaactacc ccaagtgtag ccaaaatttg cggtaaaagc gctgcccaac
     9541 taatgtgatc catagtatgt gctgcatctt taacagctct tttaggagaa gccttaaaca
     9601 taaaacaagc aactactgaa gaaataatta tacctataat caaagccatc aatgtagcat
     9661 ttttattttc aaaaaaactc aaatagggaa ataaaaaagt cccaataagt gtaatcaaag
     9721 gaaccattaa agcaggaata aaaagtttat ttttataaat atttgcatgt tttatctcat
     9781 attctttttc ttctttgcta acttcgatct ttgctggttt taataaatta aatcctgcta
     9841 taagtgctag taaaatcact atacaaccca tcacaaaatg aggcaaaact cctgctagta
     9901 aaaaagtaaa actataactt atccaaaata ccccgccgct tattcttgat tttatatctt
     9961 tagcttgatt agaaaaactt aaaattccaa aaactaaaaa taaaattcct acaatataat
    10021 aaagtaaatc aagacttatc atcactcaac cctttataag ttttttccaa tcttttatca
    10081 aataaataaa gtctagagca atggataatt aaagccaaaa ttccagttgg tatagcccaa
    10141 actgataaat gcaatggctc aacaataata ccattgctct cataaaaagc tttaataaat
    10201 aaaatagaat gcacggctat aaaaatatcc tctccaaaaa atacagcaac attatccgtt
    10261 cccgcagaaa aagctttgat tttttgacta tctttatgtg ttaagttttt aaatttaagc
    10321 ttagctgcag cttctgccat aggggctatt aaaggtctta tcatctgtgc atgtccgcct
    10381 aaagataaaa gccctaaagc tgcagtaact tgtctaaaaa caaaataaca cattaaaatt
    10441 cgtcctgtac tggcaacttt tattttggat attaaatttt tagcctgctc tcttaagcct
    10501 ttgcgttcca aaacagcaag taaaggtaaa ataagccaaa ttatagcaac atagcgatta
    10561 tctacaaaag attttcctat atcactaaca accttaacaa aatcaaaacc tgaaacaagt
    10621 ccagcataaa ttccaactga agttaccact aaaaaggggt taatctttaa agcaaaacct
    10681 aaaacaatca aaggtataga agcaagaagt aaccattcca tcaaccatct ccacaatatg
    10741 aattagaaat attatagaaa ttttaaattg aagaaaagtt taaaaaaata tttttaagaa
    10801 t
//
LOCUS       DAPIWJ010000058        10492 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.058, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000058 DAPIWJ010000000
VERSION     DAPIWJ010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10492)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10492)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10492
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.058"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1726)
                     /locus_tag="RJ259_001197"
     CDS             complement(<1..1726)
                     /locus_tag="RJ259_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7366901.1"
                     /translation="MGLMMTFTPTQKELFNKNIEALSNILLKESLKEIKSSKFELILG
                     KDNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQ
                     NKNHQHIVVFEKDIEIIWIMFHILDFSNELQNSRLMVLQTSSLDIEFFSNFCSSKPFF
                     QFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSYGNDPLDALQGIEQFVYNL
                     PQMITHPSYKELLSKRKNLSDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPIL
                     AKHGIKPDYVCMLERTEITAEFFNHDFREFDKDICFIIKSVVHPNAINYLTKKTDNFT
                     LVSTYASFINYLKLDHFGYFNMGFSVAHMACYLSLHLKHKNIIFIGQDLAYAKNGNSH
                     PDDYQNSATYESKAHEPILTKAYGGKGEVKTHHVWLMFKQNLEQDIEKIQKYLDTKVY
                     NCTEGGARIKGAIEKPFLWACENLLAKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQS
                     IKHCRDFNDNFIKVYDKIKNSFMSLQNSQKNEIFIQEIIQDIDKTKTQIDELYNTQKD
                     LIQILGPLL"
     gene            complement(1714..2484)
                     /gene="ptmA"
                     /locus_tag="RJ259_001198"
     CDS             complement(1714..2484)
                     /gene="ptmA"
                     /locus_tag="RJ259_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin modification protein PtmA"
                     /protein_id="HDV7366902.1"
                     /translation="MLENKIIFVTGACGRIGKVLCKKILLNKGTVILADINKKRLNKL
                     QENLETTFKTKLLSLELDITKQESLQIALQKSQERYGKIDAFVNSSYPFGKDWGKTPY
                     YELKYEQICESLNLHLAGFMLAAQEFVKFFKQQGYGNIINLSSIMGVYAPKFENYEGT
                     SMQSSLEYSVIKAGINHMGTWLAKELFNQNIRVNTLASGGILDNQNELFLKAYRKCCA
                     SKGMLDADDICGTLVFLLSDESRFITGQTLVVDDGWGL"
     gene            complement(2484..3191)
                     /gene="legF"
                     /locus_tag="RJ259_001199"
                     /gene_synonym="ptmB"
     CDS             complement(2484..3191)
                     /gene="legF"
                     /locus_tag="RJ259_001199"
                     /gene_synonym="ptmB"
                     /EC_number="2.7.7.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N,N'-diacetyllegionaminic acid synthase"
                     /protein_id="HDV7366903.1"
                     /translation="MAEILCTICARGGSKGVKNKNIRKINELEMIAYSIIQAQNSKLF
                     KHIVISTDSDEIASVAQKYDAEVFFKREAHLANDQAAKLPVMRDALLRSEEHFKTRFE
                     TLIDLDASAPLRSSLDIKKAYESFVKNDNSNLITAVPARRNPYFNLVEIQNNKVVKSK
                     EGNFTTRQSAPKCYDMNASIYIFKRDYLLENDSVFGEKTGLFVMDESTAFDVDSELDF
                     KIVEFLISLKNLSPKDF"
     gene            complement(3184..4089)
                     /gene="ptmF"
                     /locus_tag="RJ259_001200"
     CDS             complement(3184..4089)
                     /gene="ptmF"
                     /locus_tag="RJ259_001200"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamine-D-fructose-6-phosphate isomerase
                     subunit"
                     /protein_id="HDV7366904.1"
                     /translation="MKVLIIGFGSIGKKHFLALKNLNYEVSLLSLSAKKEEFEKTQIY
                     RSLKECHLNEFDLFIIANITTEHFNTLKALNELVKDKIILVEKPLFEKVQNFTSSKNH
                     IYVAYLLRFHPVIVALKKLLKGEKIYFASLVCNSYLPHWRALDYRQNYSAKKELGGGV
                     LLDLSHEIDLAFFLFGNLELIYSQNAKISELDITSDDFAFLALKNSQEAKIHIELDYF
                     SKFNKREITIHTLEKSFKADLINNKIEIYHKDQSQKILNFENDTIKTLQNLHQAIFEK
                     DKELCDLKQALKVLELCDEVRKKNG"
     gene            complement(4086..5111)
                     /locus_tag="RJ259_001201"
     CDS             complement(4086..5111)
                     /locus_tag="RJ259_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HDV7366905.1"
                     /translation="MDINKLKLTPDSSIEEALKIVGQERVRLGIIVDKKDKFLGVISD
                     SNIRKALISGKTLKDSIKDIYTKNPITIKENTSKEQLLKISAKTDIYDFPVLDEKGQI
                     LSIKSVSSLLKANPNSIIIMAGGLGSRLKELTKDTPKPMLKVGKKPILESIVQRLKNQ
                     NFENFIFCVNYKKQIIEDYFQKGQKFGVKISYIKERKKLGTAGALSLIKQEFKESFIV
                     MNADILTELDFNDLLKAHKKSKALMSVCVREFEQQIPYGVITQKQGFIENIEEKPTQK
                     FLVSAGIYVLENEILNLIAKNEYLDMPELIKLALQKGKVNTYIINDYWIDIGRPDEFL
                     KANEDFK"
     gene            complement(5120..6274)
                     /gene="legG"
                     /locus_tag="RJ259_001202"
     CDS             complement(5120..6274)
                     /gene="legG"
                     /locus_tag="RJ259_001202"
                     /EC_number="3.2.1.184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-N,N'-diacetylbacillosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HDV7366906.1"
                     /translation="MSKRKICIVSATRAEWYLLRILCHEIQNDKDLSLQIIATGAHLS
                     PEFGLTYKEIEKEFKITKKIPILLANDDKISLCKSMSLAFSAFSQAFEDLKPDIVVIL
                     GDRYEMLSVASVCLLMHIPLVHLCGGELTLGAIDDSIRHSISKMSHLHFVSHEIYKKR
                     LLQLGEEEKRVFNVGSLASTIIKNMNFLNKKDLEKALEMKLDKELYLITYHPLTLNVK
                     NTQKEIKTLLKKLDTLKNASLIFTKANADENGLLINEILQNYCQKNSHKAKLFDNLGS
                     QKYLSLMKIAKAMIGNSSSGISESPFFKTPCINIGDRQKGRLKTQNIIDCEINDLDQA
                     FEKLESKEFKQNLKNFKNPYDNDKNPNKFIKTCLKNANLDTILHKNFIDL"
     gene            complement(6267..7271)
                     /gene="legI"
                     /locus_tag="RJ259_001203"
     CDS             complement(6267..7271)
                     /gene="legI"
                     /locus_tag="RJ259_001203"
                     /EC_number="2.5.1.101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetyllegionaminate synthase"
                     /protein_id="HDV7366907.1"
                     /translation="MKKTLIIAEAGVNHNGDLNLAKKLIEVAADSGADFVKFQSFKAK
                     NCISIKAKKAPYQLKTTASDESQLQMVQKLELDLKAHKELILHAKKCNIAFLSTPFDL
                     ESVDLLNELGLKIFKIPSGEITNLPYLKKIAKLDKKIILSTGMANLGEIEQALNVLCK
                     NGTKRQNITLLHCTTEYPAPFDEVNLKAMQSLKDAFKLDVGYSDHTRGIHISLAAVAL
                     GACVIEKHFTLDKNMSGPDHKASLEPQELKMLCTQIRQIQKAMGDGIKKASKSEQKNI
                     NIVRKSLVAKKDIQKGEIFNEGNLTTKRPANGISAMRYEEFLGKIATKNYKEDELIRE
                     "
     gene            complement(7311..7984)
                     /locus_tag="RJ259_001204"
                     /pseudo
     CDS             complement(7311..7984)
                     /locus_tag="RJ259_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344715.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
     gene            complement(8002..9123)
                     /locus_tag="RJ259_001205"
     CDS             complement(8002..9123)
                     /locus_tag="RJ259_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl sugar amidotransferase"
                     /protein_id="HDV7366908.1"
                     /translation="MKYCDYCVMPDTRPGLKFFKDENGKNICSACVNHKNKENIDYKA
                     RFKELEALCDKYRRMNGKFEYDCAIAVSGGKDSHFQVHIMKEKLGMNPILFSVEDNFT
                     MTEAGKKNLKNLSETFGCHIISLKPDIKTQKKVMLKTFEKYGKPTWFIDRLIYSYPFA
                     MALKFNTPLLVYGENVSYEYGGSDTEETPSAKEIFLNGVASDLDINEFIDDEIKEENL
                     QLFFNPSKDKLDKLDPIYLSYFIKWNSYSNYIFAKSRGFSDLQDEWDRSHCAENFDQV
                     DSIGYILHAWMKYPKFGHAMASDYAARFVRYGLLNRKEAIELVQKRDHKLDNKCVEDF
                     CNFIGISKTTFWKIVEKHYNMDLFYKNDFGEFKLKNKLQ"
     gene            complement(9157..10119)
                     /locus_tag="RJ259_001206"
                     /pseudo
     CDS             complement(9157..10119)
                     /locus_tag="RJ259_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002811468.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(10112..>10492)
                     /locus_tag="RJ259_001207"
     CDS             complement(10112..>10492)
                     /locus_tag="RJ259_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HDV7366909.1"
                     /translation="IIDVASLCCNDREKSKNIFTKAVRKLKKGGKFYSSALSKQVFGY
                     EADKGDFFEPNHGIYIKMGSLRFDDEKSLKELYKELKCINFYTQTLKDKQSIKEEILI
                     FEGEKSSTEAMGGGIIKNKALENE"
BASE COUNT         3297 a         1708 c         1458 g         4029 t
ORIGIN      
        1 tcagtaaagg acctaaaatt tgtatcaaat ctttttgagt attgtaaagt tcatctattt
       61 gagttttggt tttgtctata tcttgaataa tttcttgaat aaaaatttca tttttttgag
      121 aattttgtaa actcataaaa gagtttttta ttttatcata aactttaata aaattatcgt
      181 taaaatctct acaatgctta atactttgat aaactttata ataagcctta agtaaaaact
      241 cattttgttt atttaaactt aaaggttcta atttttcaaa aggtttattt aaatccttag
      301 caagtaaatt ctcacaagcc caaagaaaag gtttttctat ggctcctttt atccttgctc
      361 ccccttcggt gcagttgtaa actttagtat ctaaatattt ttgtattttt tctatgtctt
      421 gttctaaatt ttgtttaaac ataagccaaa catgatgagt tttaacttct cctttccccc
      481 cataagcctt agttaaaata ggttcatgtg ccttactttc ataggtggct gagttttgat
      541 aatcatcagg atgagaatta ccattttttg cataggctaa atcctgtcct atgaaaatga
      601 tgtttttatg ttttaaatgc aaagaaagat aacaagccat atgtgcaacg ctaaatccca
      661 tattaaaata cccaaaatga tccagtttta aataatttat aaaacttgca taggttgaaa
      721 ctagggtaaa attatcggtt tttttggtta ggtaatttat ggcattaggg tgtactacag
      781 atttaataat aaaacaaata tccttatcaa attccctaaa atcatgatta aaaaattcag
      841 cagtaatttc agttctttca agcatgcaaa cataatcagg ttttatacca tgtttagcta
      901 aaataggata agaagaatcc gcacaaaaaa tcgtagcttt gctagcatac ttttttaata
      961 aaggaagttg tttagtaaga gatggtcctg tagaaacaat gatagctgta tcacttaaat
     1021 tttttctttt ggaaagtaat tctttataac taggatgagt aatcatttga ggaagattat
     1081 aaacaaattg ttctatgcct tgaagagcat caagaggatc attaccataa gaaacaatag
     1141 aatttttaaa attttctgct aattttttat tcaatcctaa aatatcttca tgaaatcttt
     1201 cataataatg actcatcagt tctaaaaaat aaattctaga aaattgaaag aaaggtttgc
     1261 tagagcaaaa attagaaaaa aattctatat ccaaagaact tgtttgcaaa accatcaatc
     1321 ttgaattttg caattcattt gaaaaatcta agatatgaaa catgatccaa atgatttcta
     1381 tatctttttc aaaaacaaca atatgctgat gatttttatt ttgtaataaa gctttaaata
     1441 aaattccatt tccaaaacca taaaaatata atacaggata aagtaggtat ttgtcgttgt
     1501 aagtgtttag catagagttt aattcatcaa taacattttc ataaagaaaa gtattatcgc
     1561 ttgtatcttt taaatttata tctagattat ctttacctaa gataagttca aatttacttg
     1621 atttaatttc ttttaaactt tcttttaaaa gaatattact taaagcctca atgtttttgt
     1681 taaagagttc tttttgagta ggggtgaagg tcatcataag ccccatccat catctaccac
     1741 taaggtttgc cctgtgataa atctactctc atcactaagc aaaaacacca aagttccaca
     1801 tatatcatct gcatctaaca tgcctttact cgcacaacat tttctataag cttttaaaaa
     1861 aagttcgttt tgattgtcta aaattccccc gcttgctagg gtattaacgc gtatgttttg
     1921 attaaaaagc tctttagcta gccaagtacc catgtggtta atccctgctt ttatcacgct
     1981 atattctaaa gagctttgca tggaagtgcc ttcatagttt tcaaattttg gcgcataaac
     2041 tcccatgatg gagctaagat tgatgatatt gccatagcct tgttgtttaa aaaatttcac
     2101 aaattcttga gcagccagca taaagcctgc taaatgtaaa tttaaacttt cacaaatttg
     2161 ttcgtatttg agttcataat aaggcgtttt accccaatct ttgccaaaag gataacttga
     2221 attgacaaaa gcatcgattt tgccgtatct ttcttgactt ttttgaaggg caatttgtaa
     2281 actttcttgt ttggtgatgt caagttctaa gcttaaaagt tttgttttaa aagttgtttc
     2341 taaattttct tgcaatttat ttaagcgttt tttgttgata tctgcaagta tcactgtgcc
     2401 tttattaaga agtatttttt tgcaaagcac tttacctatg cgtccgcaag ctcctgttac
     2461 aaagatgatc ttattttcaa gcattaaaaa tcctttggcg ataaattttt taaagagatt
     2521 aaaaactcta cgattttaaa atcaagttca ctatctacat caaaagccgt gctttcatcc
     2581 atcacaaaaa gccctgtttt ttctccaaaa acactatcat tttctaaaag ataatccctt
     2641 ttaaagatat aaatactagc gttcatatcg tagcattttg gggcactttg gcgagtggta
     2701 aaatttcctt ctttggattt tactaccttg ttattttgta tttctacgag gttaaaataa
     2761 ggattgcgtc tagcaggaac tgcggtgatg agattggaat tatcattttt aacaaaactt
     2821 tcataagctt tttttatatc aaggcttgag cgaagcgggg ctgaagcatc taagtctatg
     2881 agagtttcaa aacgcgtttt aaagtgctct tcacttctta gcaaggcatc acgcatgaca
     2941 ggaagttttg cagcctgatc attggcaaga tgggcttctc ttttaaaaaa aacttcagca
     3001 tcgtattttt gggctacact tgcgatttca tcactatcag tacttatgac tatgtgttta
     3061 aaaagctttg aattttgagc ttgtatgatg ctataagcta tcatttcaag ttcgttaatc
     3121 tttctaatat ttttgttttt aacgccttta cttccacctc tagcacaaat ggtgcataaa
     3181 atttcagcca ttttttttcc ttacttcatc acaaagttca agtactttta aagcttgctt
     3241 aagatcgcaa agttctttgt ctttttcaaa gattgcttga tgtaaatttt gaagggtttt
     3301 tatcgtatcg ttttcaaaat ttaagatttt ttgactttga tctttgtgat aaatttcgat
     3361 tttattgttt attaaatcgg ctttaaagct tttttctaaa gtgtgaatgg taatttctct
     3421 tttgttaaat ttagaaaaat agtctaattc tatatgaatt ttagcttctt gtgaattttt
     3481 taaagccaaa aaggcaaaat catcgcttgt tatgtcaagc tctgaaattt tagcattttg
     3541 ggagtatata agctctaagt ttccaaaaag aaaaaaggct agatcgattt catgagaaag
     3601 atcgagtaaa accccaccac ctagctcttt tttagcgctg taattttgcc tgtagtctaa
     3661 agccctccaa tggggcaaat aagaattgca aaccaaacta gcaaaataaa ttttttcacc
     3721 ttttaaaagt ttttttaaag ctacaatcac aggatgaaaa cgcagtaaat acgctacata
     3781 aatgtgattt tttgagcttg tgaaattttg caccttttca aataaaggtt tttctacgag
     3841 tatgatttta tcttttacga gctcatttaa agcttttaag gtgttaaaat gctctgtggt
     3901 gatatttgcg atgataaaaa gatcaaattc atttaaatga cattctttta aggaacgata
     3961 gatttgagtt ttttcaaact cttctttttt agcacttaaa gaaagcaagc ttacttcata
     4021 atttaaattt tttaaggcta aaaaatgctt ttttcctatg cttccaaagc ctatgattaa
     4081 gactttcatt taaaatcctc attggctttt aaaaactcat ctggccttcc aatgtcgatc
     4141 caataatcat tgatgatata ggtatttacc ttaccttttt gcagagcgag tttgatgagt
     4201 tctggcatat ctaggtattc atttttagca attaaattta aaatttcatt ttcaagtaca
     4261 taaatccccg cacttactag gaatttttgg gtaggttttt cttctatatt ttctataaaa
     4321 ccttgttttt gagtgatcac tccataagga atttgttgct caaactcacg cacgcaaacg
     4381 ctcattaaag cttttgattt tttatgcgct tttaaaagat cattaaaatc aagctcggtt
     4441 aaaatgtctg cattcataac gataaaactt tctttaaatt cttgttttat aaggcttaaa
     4501 gctcctgctg tgcctagttt tttacgctct ttaatataag aaattttaac cccaaatttt
     4561 tgcccttttt gaaaataatc ttctatgatt tgttttttat aattcacaca aaagataaaa
     4621 ttttcaaaat tttgattttt aagcctttgg actatacttt ctaaaatagg ctttttgcct
     4681 acttttagca tgggttttgg agtatcttta gttaattctt ttaagcgaga gcctaagcca
     4741 ccagccatga tgataatgga gtttggattg gcttttaaga gcgatgagac agattttatg
     4801 gaaagaattt gccctttttc atctaaaaca ggaaaatcat aaatatcggt tttagcagaa
     4861 atttttaaaa gctgttcttt gcttgtgttt tcttttatgg tgatgggatt tttagtgtaa
     4921 atatccttga tactatcttt taaagttttg ccactaatta aagcttttct gatgtttgaa
     4981 tcgctaatga ctcctaaaaa tttatccttt ttatcaacta taatgcctag tctaacgcgt
     5041 tcttgcccga ctatttttaa agcttcttct atgcttgaat caggggtgag tttgagtttg
     5101 tttatatcca cactaagcct tataaatcga tgaaattttt atgtaaaatt gtatctaaat
     5161 ttgcattttt taggcaagtt tttatgaatt tattgggatt tttatcatta tcataagggt
     5221 ttttaaaatt ttttaaattt tgtttaaatt ctttgctttc taatttttca aaagcttgat
     5281 caagatcgtt gatttcgcaa tcaatgatat tttgagtttt taaacgccct ttttgtctat
     5341 cgcctatgtt aatgcaagga gttttaaaaa aaggactttc actaatgcca cttgaagaat
     5401 tgcctatcat ggccttggct attttcataa gacttaggta tttttgtgag ccaagattat
     5461 caaaaagttt agccttgtgt gagttttttt ggcagtaatt ttgcaaaatt tcattgatta
     5521 aaagtccatt ttcatcggca tttgctttgg taaaaatcaa acttgcgttt ttaagggtgt
     5581 caagtttttt aagtaaggtt ttaatctctt tttgagtatt ttttacattt aaggttaaag
     5641 gatgataagt gattaagtaa agttctttat ctagtttcat ttctaaggct ttttctaaat
     5701 cttttttgtt taaaaaattc atatttttta tgatagtaga agctaaagaa cctacattaa
     5761 aaaccctttt ttcttcttct ccaagttgta aaagcctttt tttataaatt tcatgactta
     5821 caaaatgtaa atgcgacatt tttgaaatgc tatgccttat actatcatca atagccccta
     5881 aagtaagctc tccgccacat aaatgcacta agggtatgtg catcaaaaga cacacgctag
     5941 ctacgctaag catttcataa cgatcgccta aaatcaccac tatatcaggt tttaagtctt
     6001 caaaagcttg actaaaagca ctaaaagcca aactcatgct tttgcaaagg cttattttat
     6061 catcgtttgc aagcaggata gggatttttt tagtgatttt aaattctttt tctatttctt
     6121 tataagtgag tccaaactca gggcttaagt gtgctcctgt agcgatgatt tgaaggctta
     6181 gatctttatc gttttgaatt tcatgacata aaattcttaa aagataccat tcagcccttg
     6241 ttgcactgac tatacaaatt tttcttttac tcacggataa gctcatcttc tttgtagttt
     6301 ttagtagcaa ttttacctaa aaactcttca tatctcatag cacttatacc atttgcgggg
     6361 cgtttggtag taagatttcc ttcgttaaaa atttctcctt tttggatatc ttttttagcg
     6421 actaaacttt ttcttactat gttgatattt ttttgttcgc ttttacttgc tttttttatg
     6481 ccatcaccca ttgccttttg tatttgtctt atttgggtgc aaagcatttt tagttcttga
     6541 ggttctaaac ttgctttatg atcaggtcct gacatatttt tatctagggt aaaatgcttt
     6601 tctatcacac aagctcctaa ggcaaccgca gctagggaaa tgtgtatgcc ccttgtgtga
     6661 tcagaatagc ccacatcaag tttaaaagca tcttttaagc tttgcatggc tttcagattg
     6721 acctcatcaa aaggggcagg gtattctgta gtgcagtgta aaagagtgat gttttggcgt
     6781 ttagtaccgt ttttgcaaag cacatttaaa gcttgttcta tctcgcctaa atttgccatg
     6841 ccggttgaaa gtatgatttt tttatcaagt tttgcaattt ttttaagata gggtagattg
     6901 gtgatttctc cgcttggaat tttaaagatt tttaagccta actcatttaa aagatctaca
     6961 ctttcaagat caaaaggagt agaaagaaag gcgatattgc atttttttgc gtgcaagata
     7021 agctctttgt gagctttaag atcgagttca agtttttgca ccatttgaag ttgactctca
     7081 tcgctagctg tggttttaag ctgatagggt gcttttttag cctttatact gatgcagttt
     7141 ttggctttaa aactttgaaa tttaacaaaa tcagcccctg agtctgctgc gacttctatt
     7201 aactttttag ccaaatttaa atcaccattg tgattaaccc ctgcttctgc gatgataaga
     7261 gtttttttca tagttttgcc tttattttgc cttaaaataa aggcaaaatt ttatttttta
     7321 atacctacat aaatgtaatg gtgtgctgat ccttcaaaat tataaaaatt aataggatca
     7381 taatctccta aaaataaagt ttcaaaaggt tgaaaaagat tttctagatc ttgggcttta
     7441 tcaataaaat gtataaagct tgtttcattt aatcttccat taatttcaac tttactcaag
     7501 ccattttttt cttctttttg actgtgggaa aaataataat ttttcttgct catcattgta
     7561 gcaaaaagta ttccacccgt gtttaaaagt tcgtaaaatt ctaaaatatt ttgtttaagt
     7621 tcttttaagg gtatatagta aagactttga tttgcaaaga tgatatccat attttcatca
     7681 aaaagtcctt tgatactaga atttggttct ataattttac aatatccccc cccctaatat
     7741 tttgctccca aatttctttt aaacttggaa ctatatctat tccgaaggtt ttaaaccctt
     7801 tgctttgaaa atacgctgaa tgtacaccat tgccacaacc aaaatcaagt aaatttccat
     7861 ttattttatt tagtttgtat tttaaaattc tttcataaaa acgtactaca tgagcatctg
     7921 gaaaaagtaa tccgtatcca ttttcattat atttcattgt ataagtttct aatgagtttt
     7981 gcatttcttt cctttatatt tttattgtaa tttatttttt aatttaaatt ctccaaaatc
     8041 atttttataa aataaatcca tattgtaatg tttttctact attttccaaa atgtggtttt
     8101 gctaatacct atgaaattgc aaaaatcttc aacgcattta ttgtcaagct tatgatctct
     8161 tttttgtaca agttcaatag cttcttttct atttaaaagt ccatagcgca caaaacgagc
     8221 tgcataatca cttgccatag catgaccaaa tttgggatat ttcatccaag cgtgtaggat
     8281 atagcctata ctatcaactt gatcaaaatt ttctgcacaa tgacttctat cccactcatc
     8341 ttgcaaatcg ctaaatccac gacttttagc aaagatataa tttgagtaag aattccattt
     8401 tataaaatag ctcagataaa taggatcaag tttatcgagt ttatctttgc ttggattgaa
     8461 aaaaagttgc aaattttctt ctttgatttc atcgtctata aattcattta tatctaaatc
     8521 actagctaca ccatttaaaa atatttcttt ggcgctagga gtttcttcgg tatcactacc
     8581 tccatattca taactaacat tttctccata aaccaataaa ggtgtattaa attttaaagc
     8641 catagcaaaa ggatagctgt aaatcagtct atcaataaac caagtgggtt ttccatattt
     8701 ttcaaaggtt tttagcataa cttttttttg agttttgata tcaggtttta agctaatgat
     8761 atgacaacca aaagtttcac ttaaattttt aagatttttc ttacctgctt cagtcatggt
     8821 gaaattatct tcaacgctaa aaagaatagg attcattcca agtttttctt tcatgatatg
     8881 cacttgaaaa tgcgaatctt tacctccact tacggcaata gcacaatcat attcaaattt
     8941 tccattcatt ctgcggtatt tatcgcataa ggcttcaagc tctttaaatc ttgctttata
     9001 atcaatattt tctttatttt tatgattaac acaagcactg catatatttt tgccattttc
     9061 atctttaaaa aatttaagtc cgggtctggt atctggcata acacaataat cacaatattt
     9121 catttttact ccatataaag attgtaaaat aactaccccc cccccattgc ggtatttgag
     9181 gaaaaaatta tttttataat ctttacaaaa ttttttataa tttaaaacat caaaaactat
     9241 cccacctatg taaaaaaagc tttcaagtgt tgaaaatttt tgcttaaaat aaaacaaatt
     9301 atcatcatcc ttcaccccac cgccaagtag gataaaatca atatttttgt ttaaacaaag
     9361 ttcaaaagaa aaatcaagta aagccgcatt ggcatttttt tcatttttat ttgcactaag
     9421 atgatagtag gcaaatttct tacctaagaa aaaactagca taggctaaaa tttcacccct
     9481 ataacttgct tttaagatta agctttgttt aaaattaaaa agctctttaa aataatcatc
     9541 atcaaaaaaa taaaactcac ctgcttgatt tcttctcatg gtttcatcgt aaagtctttt
     9601 aaaatcctta gcatcacttg cctttgcctt tgaaatttca agttcttttc ttgctttttt
     9661 cacataagtt tttattcttg gactataatt ggctctgatt tgttctaaat ttttatagat
     9721 tggcactatg actatctttc tttcttttaa gaaaaaatca agcttttttt cataaaaact
     9781 taaattttta tcaaaaggat gaaatcttat aaaaaaagca acgatatttt ccttcaaagc
     9841 acgctgtctt aaattctcta aagctctcgt taaaaaggct ttatccatgc tattgctata
     9901 aattccacca tacccataag gactttgcaa atcaaaaaaa gaagtattct ttatactttt
     9961 tttattggct acaattttta aaaaatttcc attttcttta tagacaaatt caaaaacttt
    10021 tccataaaat tttgcatatt ctttttgaaa ataaatgtcc tcgccaaaat catcacaaaa
    10081 gaaatgatca tctaattttt caagtagaat tttactcatt ttccaaagcc ttgtttttga
    10141 taatcccccc ccccatagct tctgtagagc ttttttcacc ttcaaagatt aaaatttctt
    10201 ctttgatact ttgcttatcc tttaaggttt gggtataaaa attgatacat tttaattctt
    10261 tataaagttc ttttaagctt ttttcatcat caaaacgcaa agaacccatt ttgatgtaaa
    10321 ttccgtgatt tggctcgaaa aaatctcctt tgtcagcttc atatccaaaa acttgcttgg
    10381 ataaagcact agaataaaac ttgccaccct ttttaagttt tctaacggct tttgtgaaaa
    10441 tattttttga cttttctcta tcgttgcaac aaagcgatgc cacatctata at
//
LOCUS       DAPIWJ010000059        10410 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.059, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000059 DAPIWJ010000000
VERSION     DAPIWJ010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10410
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.059"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            209..481
                     /locus_tag="RJ259_001208"
     CDS             209..481
                     /locus_tag="RJ259_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HDV7366910.1"
                     /translation="MMPFSDEELINPVKASLEKSLPMLERDGGGLEFLGIKNGIVYVH
                     LIGACKGCASSGTTLKYGLERQLKIDIHPEITIINLNGGADEFAKL"
     gene            468..1019
                     /locus_tag="RJ259_001209"
     CDS             468..1019
                     /locus_tag="RJ259_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HDV7366911.1"
                     /translation="MQNYKKLGIEHFYKKDFKTAKMYFSMAYEKRKNKRLLNFICLCD
                     LALKSPKEASLLFDFYIEHYKISSIDKDLEEILSTIEFKKQENKQENEFEDGHALNYQ
                     DFLKSEEELGFQKSFENIINSTKLVIDNRDDFLDFLEKLLDNGYKDMTLNYIENVMPH
                     FWANDRFIKLQEKLMGFKSEIKT"
     gene            1003..2286
                     /locus_tag="RJ259_001210"
     CDS             1003..2286
                     /locus_tag="RJ259_001210"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HDV7366912.1"
                     /translation="MKLKLENSFITDNTLECEKECFFLQTTQNAKFHAQALEKGAKII
                     DVNECKKLLKIDEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQ
                     IDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQ
                     DHLDFHGTFENYKEAKELFFTDESLKFINKDALAIKFNVRNAFTYGIENPALYQIKAY
                     SLEEGISTIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFG
                     GVCGRVEQVAKGVIVDFAHTPDGIEKVLDTLKNKKLIVVFGAGGDRDKTKRPLMGKIV
                     EHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDL
                     VVILGKGDETTQEIKGIKYPFSDKVVVNEILKNQG"
     gene            2290..2601
                     /locus_tag="RJ259_001211"
     CDS             2290..2601
                     /locus_tag="RJ259_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HDV7366913.1"
                     /translation="MFENMDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKV
                     SANGKGEIIDVSIDDSLLEDKESLQILLISAINDVLAMVAQNRSSMANDVLGGFGGMK
                     L"
     gene            2598..3692
                     /locus_tag="RJ259_001212"
     CDS             2598..3692
                     /locus_tag="RJ259_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HDV7366914.1"
                     /translation="MKKILIICMLFTLSFGIERPKFEDFLAGYERNKASMLNYEGMPA
                     FALSENLLAVLKQPNAKLNKYVKYDPFLNLYLVRTDFSLIPTPMGDEEKLTRNDWVGI
                     WDPNKPYIGHIKYLAQNIDEKDQLDFNSKIGLLGTPCCEMMGIALNNSSFIGNRYLKH
                     FMKYNDVYWGDIGVDFVVRENKIYVNNVRKNPQFLINDQVISVDGLPANDLRKLNEKI
                     LFADRGSTLYFQVLRDNMDLNISTEVFAKDLSKFNLPDSKPKPKITNFTSNLGLTVNA
                     SLVVTKIDPKSKVSNAGFMVGDKILRVNNIILNNFKELQNILSAGNDFSILIERKSTK
                     LPLSNFNNELGGNANSGGDGKFQFFIRLTK"
     gene            3689..4534
                     /locus_tag="RJ259_001213"
     CDS             3689..4534
                     /locus_tag="RJ259_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HDV7366915.1"
                     /translation="MNLKELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQL
                     LLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDET
                     TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRL
                     SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDV
                     TTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLSECEQDLEKLNEKLAQMIQNL
                     IIQYL"
     gene            4545..6443
                     /gene="tkt"
                     /locus_tag="RJ259_001214"
     CDS             4545..6443
                     /gene="tkt"
                     /locus_tag="RJ259_001214"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HDV7366916.1"
                     /translation="MNIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY
                     HLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHP
                     EISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
                     YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYE
                     EINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDP
                     NISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFK
                     GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREH
                     AMAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDG
                     PTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADIPSAFVLSRQKLKALNEP
                     VFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFE
                     KQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFERFGFSVSK
                     LVNFILSK"
     gene            6445..7554
                     /locus_tag="RJ259_001215"
     CDS             6445..7554
                     /locus_tag="RJ259_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7366917.1"
                     /translation="MNTNFKFQNNTLFIFGIWDKTSIYKLKIKDFLALIQSKEVIFDF
                     KDLKAIDTAGVRFFLALENDLKNKNIKITKEGLNSRFQTLFELCEKNYQRLGKTKKSH
                     QNFSEYFIDLGKLSLELLKILRKFINFTGAFFTSLFLCLKNPKNFRFIAFLYHIENSA
                     FKALPIVILTALLVGVVLAYQAAYQLAQFGANIFIVDLMGISATRELAPLIAAIVIAG
                     RSASSYTAQIGVMKITDEIAAMNTMGFRSFEFIVIPRVMALVVAMPLIVAISDAISII
                     GGMMVAKLNLDISFAEFLRRFREAVDIKHIFIGLAKAPIFGFLIGLIACFRGFEVKNT
                     TQSIGIYTTKSVVNAIFWVIAFDALFSVILTSTGI"
     gene            7555..8277
                     /locus_tag="RJ259_001216"
     CDS             7555..8277
                     /locus_tag="RJ259_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7366918.1"
                     /translation="MVIKAQNIITKFGEKIVHDGVSFEIKKNEIFGILGGSGSGKSVL
                     LKQMLMLEHFDDGEYEILGYKLKNINEEDALALRKKWGVVFQFAALFSFFNVYENIAI
                     PLKEYTHLDENSIQELVLMKLKMVGLNESVLKQFPSELSGGMQKRVAIARALALDSKL
                     LFLDEPTSGLDPHSSREFDDLVLELKKSFDLNIILVTHDKESMKNLLDRFIILENKKV
                     GFCGTYEELRLQNERLFKRFME"
     gene            8280..9170
                     /locus_tag="RJ259_001217"
     CDS             8280..9170
                     /locus_tag="RJ259_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HDV7366919.1"
                     /translation="MENRANYFFVGLFVFGVFFASLGFILWLGGYSKEESFKYYEIHT
                     QESVAGLGIKAPVRLLGVEVGSVEEISIYNQDELGVNIRIKVKNNTPIKEDTFATLQL
                     QGITGLKFIQLQGGSKNSKDLVSMQGKLPVIPFKESFLATIDRQSEHIFSLVKTADDK
                     SKELLSEKNLKNLEILLQNLAELSANLNANSKNLSLNLSNASLKIGKMADNISLSAQN
                     FNSSLKNIKESTMILKNFIKKADEKLNTYDDIKASLMQNLELFKRVLIESNILIENLQ
                     NSPADLIFKETKPKLGPGEK"
     gene            9170..9769
                     /locus_tag="RJ259_001218"
     CDS             9170..9769
                     /locus_tag="RJ259_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7366920.1"
                     /translation="MLKQLFCILTFIFMLCGCSLRHETINKNENIILKDEGIDSNIFF
                     KKTGKILKIRNANAPLYLNSRAIVYIDNGFSNKYAHYFWGDLPSNLYSFLILSKFEQS
                     NIFTTLLSSTSSLSADYSLESRINSFEQILNNNENYAQISISVNFINLENNQIIAHKI
                     FNTKEKIEKKDIRSTYNAFQKALNKIGNEIVFWVNSNLS"
     gene            9825..10325
                     /locus_tag="RJ259_001219"
     CDS             9825..10325
                     /locus_tag="RJ259_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366921.1"
                     /translation="MKSDLDIFKKHLGEIQGVNEFKANQICSQINDANDFIGALQVLD
                     MSLKKIEKSILERIDENSDDMQKRTLDATASQLIQNCSFMGTALFGNIFNVYVGKKLF
                     EFEIANPLLILQTSNYEGVLAYIQDKRDEIKIILSELSTAITMGETMDNAGIYNSTMD
                     FKNLFK"
BASE COUNT         3848 a         1498 c         1759 g         3305 t
ORIGIN      
        1 aaaatatgaa aaaaacgaag aaattctgca acaatcattt agaaacttaa atggaatttt
       61 tggtaacaaa aactttacag cttatgattt aggatttagc atacaaaata atgacgaacc
      121 tttttaattt atttaaattt caagccttaa tttacctttt tttaaacaca atcacgctaa
      181 agtatataaa aatttttaag gataaattat gatgcctttt agtgatgaag agcttataaa
      241 tcctgttaaa gcaagtttag aaaagagctt gcctatgctt gaacgtgatg gcggagggct
      301 tgaattttta ggaattaaaa atgggatcgt ttatgtccat ttaataggag cttgtaaagg
      361 ctgtgcatcg agtggaacaa cgctaaaata cggtcttgaa aggcaactta agattgatat
      421 tcatccggaa atcactataa tcaatttaaa cggcggagca gacgaatttg caaaattata
      481 aaaaacttgg aattgaacat ttttacaaga aagattttaa aactgcaaaa atgtattttt
      541 ctatggctta tgaaaaacgc aaaaataaac gcttgctaaa ttttatctgc ctttgtgatc
      601 ttgctttaaa atctcctaaa gaagcttctt tactttttga tttttatata gaacattaca
      661 aaatctctag cattgataaa gacttagaag aaattttaag tacaattgaa tttaaaaaac
      721 aagaaaacaa acaggaaaac gaatttgaag atgggcatgc gttaaattat caagattttt
      781 taaaaagcga agaagaactt ggctttcaaa aaagttttga aaatatcatt aacagcacta
      841 aattagttat tgataatcgt gatgattttt tagatttttt ggaaaaatta cttgataatg
      901 gctataaaga tatgacttta aattacatag aaaatgttat gcctcatttt tgggcaaatg
      961 atagatttat caaactccaa gaaaaactca tgggatttaa aagtgaaatt aaaacttgaa
     1021 aattcattca ttacagataa caccttagag tgtgaaaaag aatgcttttt tttgcaaacc
     1081 acacaaaatg ctaaatttca cgctcaagcc ttagaaaaag gtgcaaaaat cattgatgta
     1141 aatgagtgta aaaaactttt aaaaatcgat gaaaagattc aaatcatagg aatcacagga
     1201 accaatggca aaaccacaac cgcagcagcg atttattcta tcttattgga tttaggttat
     1261 aagtgtgggc tttgtgggac aagaggagct tttatcaacg atgaacaaat cgatgaaaaa
     1321 tccttaacca cctcccctat tcttaaaacc ttagaatacc tacaaatagc cactcaaaaa
     1381 aaatgtgatt ttttcatcat ggaagtaagc tcacacgcac tcgttcaaaa ccgcatcgaa
     1441 ggcttaaatt ttgctgctaa aatttttacc aatatcactc aagatcattt agattttcac
     1501 ggtacttttg aaaattataa agaagcaaaa gaactttttt ttaccgatga gagtttaaaa
     1561 tttatcaaca aagatgcttt ggctattaaa tttaatgtgc gtaatgcttt tacttatggc
     1621 atagaaaatc ctgctttata tcaaatcaaa gcttattctt tagaagaagg cattagtact
     1681 attgtaacaa ataaaaatca aacttttcac atagactcgc ccttgctagg actttttaat
     1741 ctttacaatc ttctagttgc tagtgcttgt gtgaatgaac tcgtaaagcc tgatttaaaa
     1801 gacttggaaa aagctatcag tggatttggc ggggtttgtg gcagggtaga acaagtagca
     1861 aaaggtgtga ttgtagattt tgctcatacg cctgatggca ttgaaaaagt gcttgacact
     1921 cttaaaaata aaaaactcat cgttgttttt ggagcaggtg gagatagaga taaaaccaaa
     1981 cgccctttaa tgggaaaaat cgtcgaacat tttgcaaaaa ttgctatcat tacaagtgac
     2041 aatccacgca gcgaagaacc aaaaaccatc atggaagaaa ttttatcagg ctttactaaa
     2101 aaagaaaaag ttttaatgat agaagataga aaagaagcta taaaaaaagc tttagaacta
     2161 aaagaaaatg acgatttagt cgttatttta ggcaaaggtg atgaaactac tcaagaaatt
     2221 aaagggataa aatatccttt tagtgataaa gtagttgtta atgaaatttt aaaaaatcaa
     2281 ggataatcaa tgtttgaaaa tatggatttt tctaaaatgg gagaactttt aaatcaagtt
     2341 caagaaaaag caaaaaatat agaactagaa cttgcaaatc gtgaatttag tgccaaaagc
     2401 ggagcaggac ttgttaaagt aagtgccaat ggaaagggtg aaattatcga tgttagcatt
     2461 gatgattctt tacttgaaga taaagaatcc ttgcaaattt tacttatttc tgcaattaat
     2521 gatgttttgg ctatggttgc acaaaatcgt tcaagtatgg cgaatgatgt tttaggcggt
     2581 tttggaggta tgaaattatg aaaaaaattt taattatttg catgcttttt actttgtctt
     2641 ttggtataga aagacctaaa tttgaagatt ttttagcagg ttatgaaaga aataaggcaa
     2701 gcatgctcaa ctatgaagga atgccagctt ttgcactcag tgaaaattta cttgctgtgt
     2761 taaaacagcc taatgctaag cttaacaaat atgtaaaata cgatccattt ttaaatttat
     2821 atcttgtaag aactgacttt agcctaatcc ctactcctat gggtgatgaa gaaaaactta
     2881 ctcgtaatga ttgggttgga atttgggatc ctaataaacc ttatataggg catattaagt
     2941 atttagctca aaatattgat gaaaaagatc aacttgattt taattctaaa ataggacttt
     3001 tagggactcc atgctgtgaa atgatgggga ttgctttaaa taatagctct tttataggca
     3061 atcgctattt aaaacatttt atgaaatata acgatgttta ttggggggat attggcgttg
     3121 attttgttgt tcgagaaaat aaaatttatg ttaacaatgt aagaaaaaat ccacaatttt
     3181 taatcaatga tcaagttata agtgttgatg gcttacccgc caatgattta agaaaactca
     3241 atgaaaaaat tctttttgca gatcgcggaa gcactcttta ttttcaagtg ttgcgtgata
     3301 atatggattt aaatatttct actgaagttt ttgcaaaaga tttgagcaaa tttaaccttc
     3361 ctgattctaa accaaaacca aaaattacaa atttcacaag caatcttggt ttaacggtta
     3421 atgctagtct tgttgtaact aaaatagatc caaaatcaaa agtatcaaat gcaggattta
     3481 tggtaggaga taaaatttta cgcgttaata atattatttt aaataatttt aaagaattac
     3541 aaaatatttt aagtgctggt aatgacttta gcatcttaat tgaacgcaaa agtactaaat
     3601 tacctttatc aaatttcaac aatgaactag gcggaaatgc caactcaggt ggcgatggta
     3661 aatttcaatt tttcataagg cttactaagt gaatttaaaa gaacttttta tccatcactt
     3721 agaaaaaaat ctacccaaag ttgaaagctt tcatcctttt ttcaatgaag ctttagcact
     3781 tatgttaaaa gcaggaggaa agcattttcg cgcacaattg cttttaagcg tagtgcaaag
     3841 caataaacct gaacttttaa atcaagcttt agatgtagct ttagctttgg aatttatcca
     3901 tacttattca ctcatacacg atgatttacc cgctatggat aatgcggact ttagacgagg
     3961 aattccaacc ttacacaaaa gctacgatga aactacagcc atcttagtag gtgatgcttt
     4021 aaataccgaa gcttttttag ttctaagtca tgctcattta aaagatgaaa tcaaaatcaa
     4081 actcatcaaa acccttgcct ttaatgcagg acttaatgga atggtcatag gacaagctat
     4141 tgattgtttt tttgaagaca aaagactgag tttaaatgaa cttgagtttt tgcatacaca
     4201 taaaaccgca agattgatcg ccgcagcttt aaaaatgggt tgtgaaattt gcgaacttaa
     4261 caacgaagaa agcaatcaaa tttacaaact tggtttaaaa ctaggactga tttttcaaat
     4321 caatgatgat attatcgatg taactacaag tcaagaacaa agcggaaagc ctaccaacaa
     4381 cgatattcat aaaaattctt ttgtcaattt gcttggactt gaacaagcca taaaaacaaa
     4441 agaaaatctt cttagtgaat gcgaacaaga cttagaaaaa cttaatgaaa aactcgcaca
     4501 aatgatacaa aatttaataa ttcaatactt ataaaggcaa aataatgaac attcaaattt
     4561 tacaagaaca ggcaaatact ctaagatttt taagtgctga tatggtgcaa aaagcaaact
     4621 caggacaccc aggtgcacct ttgggcttag cagatatttt aagtgtttta agttatcatt
     4681 taaaacacaa tcccaaaaat ccaacttggc taaaccgaga tagacttgta ttttcaggcg
     4741 gacatgcaag tgctttgctt tatagttttt tacatttaag cggctatgac ttaagcttag
     4801 aagatcttaa aaatttccgc caacttcatt ctaaaacccc tggacaccct gaaatttcaa
     4861 ctcttggagt agaaatcgct acaggccctt taggacaagg cgttgccaat gctgtaggct
     4921 ttgctatggc agcaaaaaaa gcacaaaatt tgctaggcag tgatttaatc gatcataaaa
     4981 tttattgtct ttgcggagat ggggatttac aagaaggcat ttcttatgaa gcttgttctt
     5041 tagcaggact tcacaaactt gataacttca tacttattta tgatagcaac aatatctcta
     5101 tagaaggcga tgtaggttta gcctttaacg aaaatgtaaa aatgcgtttt gaagcacaag
     5161 gatttgaagt tttaagtata aatggacacg attatgaaga aatcaataaa gccttagaac
     5221 aagctaaaaa atccacaaaa ccttgtctta tcatcgcaaa aacaactata gcaaagggtg
     5281 caggagagct tgaaggcagt cataaaagcc atggcgcacc tttgggtgaa gaagtgatta
     5341 aaaaagccaa agaacaagca ggctttgatc caaatatcag ttttcatatc ccacaagcaa
     5401 gcaaaatccg ctttgaaagt gctgtagaac ttggggattt agaagaagca aaatggaaag
     5461 ataagcttga aaaaagtgct aaaaaagaac ttttagaaag gctattaaat cctgatttta
     5521 acaagatagc ttatcctgat tttaaaggaa aagatcttgc tacaagagat agtaatggtg
     5581 aaattttaaa tgttttagct aaaaatttag aaggattttt aggtggaagt gcagacttag
     5641 gcccttcgaa taaaacagaa cttcacagta tgggagactt tgtagaaggt aaaaatatcc
     5701 attttggtat cagagaacac gctatggcag cgattaacaa tgcttttgca agatatggaa
     5761 ttttcttacc attttcggca acttttttca tctttagcga gtacttaaaa cctgccgcaa
     5821 gaatagcagc tctaatgaaa atcaaacatt ttttcatttt cacacacgat agcataggcg
     5881 tgggcgaaga tggaccaaca caccaaccta tagaacaact tagcactttt agagctatgc
     5941 caaatttttt aacctttaga cctgctgatg gggtggaaaa tgtcaaagct tggcaaatag
     6001 ccctaaatgc tgatattccg agtgcttttg tgctttcacg ccaaaaactc aaagctctaa
     6061 atgaacctgt ttttggagat gtaaaaaacg gagcgtattt actcaaagaa agcaaagagg
     6121 ctaaatttac acttctagca agtggaagtg aagtttggct ttgtctagaa agtgcaaacg
     6181 aacttgaaaa acaaggtttt gcttgtaatg ttgtttccat gccttgtttt gaactttttg
     6241 aaaaacaaga taaagcttat caagaaagat tgttaaaagg tgaagttata ggtgttgaag
     6301 cagcacattc taatgaactt tataaatttt gccataaagt atatggcata gaaagttttg
     6361 gagaaagtgg taaagacaaa gatgtgtttg aacgctttgg atttagcgtt tcaaagcttg
     6421 taaattttat ccttagcaaa taaaatgaat acaaatttca aatttcaaaa taatactctt
     6481 tttatctttg gaatttggga taaaacaagt atttataagt taaaaataaa agatttttta
     6541 gctttgatcc aaagcaagga agtgattttt gattttaaag atctaaaagc aatcgatacc
     6601 gctggagtga gatttttcct tgctttggaa aatgacctta aaaataaaaa tattaaaatc
     6661 accaaagaag gcttaaattc acgctttcaa accctttttg aactttgtga aaaaaactac
     6721 caaagactag gcaaaacaaa aaaatcacat caaaatttca gtgaatactt tatcgatctt
     6781 ggaaaattaa gtttagaact tttaaaaatt ttaagaaaat tcatcaattt cacaggagct
     6841 tttttcacaa gtcttttttt atgcctcaaa aatcctaaaa attttcgctt tattgctttt
     6901 ttatatcata tagaaaattc tgcttttaaa gccttaccta tagttatttt aaccgctctt
     6961 ttagtaggag tggttttagc ctatcaggct gcttaccaac tcgcacaatt tggagccaat
     7021 attttcatag tggatttgat gggaatttca gccactagag aacttgcacc tttaatcgct
     7081 gccatagtga tcgcaggaag aagtgcaagc tcttataccg cacaaattgg ggtgatgaaa
     7141 attactgatg aaattgcagc tatgaatact atgggttttc gttcttttga atttattgtt
     7201 attccacgtg tcatggcttt ggtagtagct atgcctttaa tcgttgccat tagcgatgca
     7261 atcagtatta taggtggaat gatggttgca aaattaaatc ttgatatttc ttttgccgaa
     7321 tttttaagac gctttagaga agctgtagat ataaaacata tctttatagg acttgcaaaa
     7381 gcacctattt ttggattttt gataggactt attgcttgtt ttcgtggttt tgaggtaaaa
     7441 aacactacac aaagtatagg aatttataca acaaaaagcg ttgtaaatgc tattttttgg
     7501 gtgatagctt ttgatgcttt attctctgtt attttaactt ctacaggaat ttaaatggtt
     7561 attaaagcac aaaatatcat tacaaaattt ggagaaaaaa ttgtccatga tggcgtaagt
     7621 tttgaaatca aaaaaaacga aatttttggt attttaggag gtagtggaag tggaaaatcc
     7681 gtccttttaa aacaaatgct tatgcttgaa cattttgatg atggagaata tgaaatttta
     7741 ggctataaac ttaaaaatat caacgaagaa gatgcacttg ctttgcgtaa aaaatggggt
     7801 gtggtttttc agtttgctgc actttttagc ttttttaatg tttatgaaaa tatcgctatt
     7861 cctttaaaag aatacactca tttagatgaa aatagcatac aagaactggt tttaatgaag
     7921 ctaaaaatgg taggcttaaa cgaaagtgtt ttaaaacaat ttccaagcga acttagtggc
     7981 ggtatgcaaa aaagagtggc aattgctaga gctttagcac ttgatagtaa attgcttttt
     8041 ttagatgaac ctacttcagg acttgaccct catagtagtc gtgaatttga cgatttggtt
     8101 ttagagttaa aaaaaagttt tgatctaaat atcattttgg ttacacatga taaagaaagt
     8161 atgaaaaatt tactcgatcg ttttatcatt ttagaaaata aaaaagttgg attttgcggc
     8221 acttatgaag aattacgctt gcaaaatgaa cgacttttta aaagatttat ggagtaaaag
     8281 tggaaaatag agcaaattat ttttttgtag gactttttgt ttttggagta ttttttgcaa
     8341 gccttggttt catactttgg cttggtggat actctaaaga agaaagtttt aagtattatg
     8401 aaattcacac acaagaatcc gttgcaggac ttggcataaa agcacccgta aggcttttgg
     8461 gcgtggaagt aggtagcgta gaagaaatca gcatttacaa tcaagatgaa ctcggcgtta
     8521 acatacgcat caaggtcaaa aacaataccc ctataaaaga agatactttt gctactttgc
     8581 aacttcaagg tatcacagga cttaaattta tccaacttca aggcggaagt aaaaatagta
     8641 aagatctagt atctatgcag ggaaaacttc cagtcattcc ttttaaagaa agttttttag
     8701 cgaccataga cagacaaagt gaacatattt tttctttggt taaaacggcc gatgataaat
     8761 caaaagaact tttaagcgaa aaaaatctta aaaatctaga aatccttttg caaaatctag
     8821 cagaattaag tgcaaattta aacgctaatt ctaaaaattt aagtcttaat ctttcaaacg
     8881 caagtttaaa aataggaaaa atggctgata atataagcct tagtgcgcaa aatttcaact
     8941 ccagtcttaa aaacataaaa gaaagcacaa tgattttaaa aaatttcata aaaaaagctg
     9001 atgaaaaatt aaacacttat gatgatatta aagcatcttt gatgcaaaat ttagaacttt
     9061 ttaaacgggt tttaattgaa agcaatattc taatagaaaa tttacaaaac agccctgctg
     9121 atttgatttt taaagaaact aaacctaaac ttggaccagg agaaaaataa tgctaaagca
     9181 attattctgt attttgactt ttatttttat gttatgcgga tgctctttaa gacacgaaac
     9241 catcaataaa aatgaaaata tcatattaaa agacgaagga atagactcaa atattttttt
     9301 taaaaaaact ggtaaaattc ttaaaattcg caatgcaaat gcacctttgt atttaaactc
     9361 aagagctatt gtttatatag ataatggttt tagcaacaaa tacgcacatt atttctgggg
     9421 agatttacca agcaatcttt attctttttt aattttatca aaatttgaac aaagcaatat
     9481 ttttacaacc ttactttctt caacaagctc tttaagtgcg gattattctc ttgaaagcag
     9541 gattaactct tttgagcaaa ttcttaataa caatgaaaac tacgctcaaa tttctataag
     9601 cgtaaatttc ataaatcttg aaaacaatca aataatagct cataaaattt tcaataccaa
     9661 agaaaaaata gaaaaaaaag atatccgctc tacctataat gcttttcaaa aagccttaaa
     9721 taaaattggc aatgagattg ttttttgggt aaattctaac ttatcctaat ttaggaacac
     9781 tttttgcttt ttaaatattt agcaatattt ttgaaaggta aacaatgaaa agtgatttag
     9841 atatatttaa aaaacactta ggtgaaattc agggcgtgaa tgaatttaaa gcaaatcaaa
     9901 tttgctctca aatcaatgat gcaaatgatt ttataggagc acttcaagtg cttgatatgt
     9961 ctttaaaaaa aatagaaaaa agcattctag aaagaataga tgaaaattca gatgatatgc
    10021 aaaaaagaac tcttgatgcc acagcgtcac aacttataca aaactgctct ttcatgggaa
    10081 cagctctttt tggaaatatt ttcaatgttt atgttggtaa aaaacttttt gaatttgaaa
    10141 ttgctaatcc acttttaatt cttcaaacaa gtaattacga aggtgtattg gcctatatac
    10201 aagataaaag agatgaaata aaaatcattc tatcagaatt atcaaccgca attaccatgg
    10261 gcgaaactat ggataatgct ggaatttata actctacaat ggattttaaa aatttattta
    10321 aataagaata gtaatcgttt gttctcttta agcaaatata atatatttta gcttaaagag
    10381 attttccaaa ctctaaaaga gagttaggct
//
LOCUS       DAPIWJ010000060        10243 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.060, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000060 DAPIWJ010000000
VERSION     DAPIWJ010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10243)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10243)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10243
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.060"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..1221
                     /locus_tag="RJ259_001220"
     CDS             <1..1221
                     /locus_tag="RJ259_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HDV7366922.1"
                     /translation="FIYTFFIHYFALLIFVRRKRYIFATCMAFIILNLCFFKYFPSIK
                     GSVDEILNFFGLEFLNIDLVLPIGISFYTFTSITYLVEVYQKRRLESFLNLATFLSFF
                     PTLLSGPIMRSSFFFEQAYQKREFKHANLIIILLVFGIVKKVLIANYLGIYAKSILDF
                     PQSYNFIQLLSAIYAYAIQIYCDFSGYVDLVCAFALMLGFTLPSNFNMPYLAKNLKDF
                     WARWHISLSTFIRDYIYIPLGGNRKGMPRTIVNILIAFILSGMWHGNTLAFIVWGLLH
                     GIGIVFIHLLALSKFSLQKIPALGRFLTFQFVCFTWIFFYYSKNLEDAIEYFKACYYN
                     FFQIPSYNDIYMLVAFGVLFMIYPLFINFKEYCIKILNLTPFLLKPFIIAFILLLVFA
                     FMPDGIPDFIYSSF"
     gene            1222..2232
                     /locus_tag="RJ259_001221"
     CDS             1222..2232
                     /locus_tag="RJ259_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF459 domain-containing protein"
                     /protein_id="HDV7366923.1"
                     /translation="MSVVRFFFILIIVLGLVVVVMNQSISSYIEQKYHFAFYPHNDLL
                     KEANGFKIKLEQIRAILSNEPLLQTNEETTNQESKSTDENLSKIDKVLNTLENDENTS
                     HKETNLTLIQDANISFIDNTKLELQNGDEFLFIGDSLMQGVAIALNRDLRNLNLKVTD
                     LSKQNTGLSYKSYFDWSKATNEAFIKNSNIKYLVVLLGANDPWDIKKGGNYHRFGSLS
                     WIDIYTSRVDEIIKIAKKHKAKVFWFEIPPVKKEDLNKKIQVLNKIYSDEILKNKEIF
                     INTKLFFSVNDEYSAYIKDENNRSIKVRTDDGVHFTPSGAREMSKLLLEHIKLKEENA
                     SK"
     gene            2219..3397
                     /locus_tag="RJ259_001222"
     CDS             2219..3397
                     /locus_tag="RJ259_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HDV7366924.1"
                     /translation="MLVNKFKIILLFFIIFTSSYAQNLNTNDTIDSILNQNKNHSALT
                     SYVLKKDLKNLEKKLEKNQNIGIRIYGDSHMAADFFPRVIRGYLIRSNSIGFAYPLQP
                     KYQQNLNLVYSYKNFEILNSRNPANAGHNFPLGGIIAKAKIKGAKINLDTTLDKKKFK
                     IGFLFKAKQNTNAFSIKDAKNQSYELRTTQINKWSYKELELDLPLQISALQKDAELGG
                     YFITNKDNNVFLDTIAINGAKSDLWLSWNQTVVKKELGLLHNDLIILAYGSNDALFKG
                     FEKQKFKNNLKKWISILKTYNKNAVIMLISPPTVVQKQGKNYKLAPDFFTIRKALYEV
                     AKEEKTLIFDMHQFMQDSGGKNKWIEQKLSLNDVHLTIKGYELMAKKLLEDLKNIIDY
                     "
     gene            complement(3400..4770)
                     /locus_tag="RJ259_001223"
     CDS             complement(3400..4770)
                     /locus_tag="RJ259_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HDV7366925.1"
                     /translation="MKIILSIFLAFFLSACGVKLSLPKEVDLTQEQMKDLNLTYDWYR
                     SYDNAKLNEFLNFVLLNNSDINIARKTLLSALARADLIDYDLYPTLSGNLGFGADKDL
                     NSGKQSKNFNNSLNLSYELDIYGKLRDSASASEFSAKASAYDLENLKISMINTALNDV
                     FELAYFNDVDKLLRAYLSNLEQMKELYNYKYKLGKIEELDLLNIEQSLLRAKQNLLSN
                     DQNRNLLIKNLQDLLARQEGFAYIEYFKTLSLNDFKTLSPDFNIPLKALAYRADVRSK
                     LNSLKSAFKDYSSMQKSILPSISLGGALSGSDKKIDDSFKFEILSGNVKISLPFLDYG
                     RVKQNIKISQFAYEQLLISYEQVLQSAMNEFALNYKDYQSDTLLLQNLQNINIKQELI
                     TKAYYEKYILGKSELKDYLDANNTLNSTQQEFLRARFNLLKTINSYYQITALSFNDKN
                     LEFPKY"
     gene            complement(4772..6697)
                     /locus_tag="RJ259_001224"
     CDS             complement(4772..6697)
                     /locus_tag="RJ259_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7366926.1"
                     /translation="MIFLKNICKNIGENAILKNVSLSIEKGEFVAIIGQSGSGKTSLL
                     NIIGTLDTPSSGTYVFDEYEVTKLNNDEKARLRREKIGFIFQRYNLLSLLSAKENVSL
                     PAVYAGKNLQERSQNAKKLLNDLELAHKLDSKPNELSGGQQQRVSIARALINGGELIL
                     ADEPTGALDSKSGIMVLEILQKLNEQGHTIVLVTHDPKIAAQAKRVIEIKDGEILSDT
                     KKEKAQEKLILKTMPKEKKTLTLLKNQAFECFKIAYSSILAHKLRSILTMLGIIIGIA
                     SVVCVVALGLGSQAKVLESIARLGTNTIEIRPGKGFGDLRSGKTRLNFSDLETLRSLE
                     YLEAVDAHSNTSGVATYTNISLSARAEGVGVNNFAIEGLRIDAGRILNNDDVKNSTNV
                     AVLDFNAKKNLFPDEKSENILGRVVLFNSQPFKIIGVLQKDTDKPIEDNVVRFYIPYT
                     TLMNKLTGDRNLREIIVKVKDDVSSTLAENAIIRILEIKRGQKDFFTFNSDTFKQAIT
                     ANKRTTTILTACVAVIALIVGGIGVMNIMLVSVSERTREIGIRMAIGARREDIMMQFL
                     IEAVMICTIGAILGVILSIFVIFAFNTLSTDFPMILNAYSVLLGLLSSMFIGVVFGFF
                     PARNAANLNPISALSKE"
     gene            complement(6697..7869)
                     /locus_tag="RJ259_001225"
     CDS             complement(6697..7869)
                     /locus_tag="RJ259_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDV7366927.1"
                     /translation="MKKKIVLIILIAILGSVGAYFIFFNNDEKISYLTQKIQKKDISQ
                     TIEAVGKVYAKDQVDVGAQVSGQIIKLYVDVGTHVKQGDLIAQIDKDKQQNDLDITKA
                     QLESAKANLESKKVALEIANKQYQREQKLYAAKASSLENLETQKNNYYTLKANVAELN
                     AQVVQLEITLKNAQKDLGYTTITAPMDGVVINVAVDEGQTVNANQNTPTIVRIANLDE
                     MEVRMEIAEADVSKIKVGTELDFSLLNDPQKTYHAKIASIDPADTEVSDSSTSSSSSS
                     SSSSSSSSSNAIYYYAKFYVANKDDFLRIGMSIQNEIVVASAKAVLAVPTYAIKSDPK
                     GYYVEILENQKAVKKYVKLGIKDSINTQILEGVNEDEELIVSSSADGLAPKMKLRF"
     gene            complement(7948..9138)
                     /locus_tag="RJ259_001226"
     CDS             complement(7948..9138)
                     /locus_tag="RJ259_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDV7366928.1"
                     /translation="MQKLVENLALKYYDKVVDLRHQIHMHPELEFEEENTAHLVCKIL
                     DEFGIKYQKNIAKTGILAIIEGKKKSQKKPKCVLLRADMDALPVQEKTNLSYASKIDG
                     KMHACGHDGHTAGLLGAALILNELKDEFCGTIKFMFQPAEEGSGGAKPMIESGVLENP
                     YVDAVFGCHLWGPLLENTAQIVSGEMMAGTDIFDLEFIGRGGHGAHPHTCIDPIIMTT
                     QFVNNIQSVISRRLAPYEAGVITVGQICAGTTYNVIPTNAYLKGTVRFLNDKTQDILK
                     SSLEEVAAATAKSNGGDYKLKYTKEFPPLINDEKAVLIARKAFAKVLGEENIIVSSKP
                     DMGAEDFAFLTRERMGAYVFVGISKDLNHPALHHSSTFCWDDENLKVLMQGDVMMALE
                     FLNL"
     gene            complement(9147..10027)
                     /gene="ppk2"
                     /locus_tag="RJ259_001227"
                     /pseudo
     CDS             complement(9147..10027)
                     /gene="ppk2"
                     /locus_tag="RJ259_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344034.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
BASE COUNT         3452 a         1776 c         1313 g         3702 t
ORIGIN      
        1 tttatatata ccttttttat acactatttt gccttgctaa tttttgtgcg tcgcaagcgt
       61 tatattttcg ctacttgcat ggcttttatt attttaaatt tatgtttttt taaatacttt
      121 cctagcatca aaggaagtgt tgatgagata ttaaattttt tcggtttaga atttttaaat
      181 attgatttag tattaccaat aggaattagt ttttatacct ttacttctat tacttatctt
      241 gtagaagttt atcaaaaacg ccgtttagaa agttttttaa atttagcaac cttcttatca
      301 ttttttccaa cactactttc agggcctatt atgcgaagtt cttttttctt tgaacaggcc
      361 tatcaaaaac gcgaatttaa acatgcaaat ttaatcatca tcttgcttgt ttttggtata
      421 gttaaaaaag ttttaatagc caattacctt ggaatttatg ctaaaagtat tttagacttt
      481 ccacaatctt ataatttcat acaactttta agcgcaattt acgcctatgc aattcaaata
      541 tactgcgatt ttagcggata tgttgattta gtttgtgctt ttgctttaat gttaggtttt
      601 acccttccgt ctaactttaa catgccttat cttgcaaaaa acctaaaaga tttttgggct
      661 agatggcata tcagtctttc aacctttata agagattata tctatatacc tttagggggc
      721 aatagaaaag gaatgccacg cactatagtt aacatactca tcgcttttat actttcaggt
      781 atgtggcatg gcaatacact tgcttttatt gtttggggtt tattgcatgg tattggcata
      841 gtttttatac atttgctagc tttaagcaaa tttagtttac aaaaaattcc agctttagga
      901 agatttttaa cctttcaatt tgtatgtttt acttggattt tcttttacta tagcaaaaat
      961 ctagaagatg caatagaata ttttaaagct tgttattata atttcttcca aattccatct
     1021 tataacgata tctatatgtt ggttgctttt ggggttcttt ttatgatcta tcctttattt
     1081 attaatttta aagaatattg cattaagatt ttaaatctta ctccattttt gctaaaacct
     1141 tttatcatag cttttatttt acttttggtt tttgctttta tgccagatgg aattcctgat
     1201 tttatttatt cgagttttta gatgagtgta gttagatttt tcttcatttt gattatagtg
     1261 cttggcttgg ttgttgtagt tatgaatcag agcattagct cttatataga acaaaaatat
     1321 cattttgcat tctatcctca taatgatctt ttaaaagaag ccaatggctt caaaattaaa
     1381 ttagaacaaa ttcgtgcaat tttaagcaac gaacccttgc ttcaaaccaa tgaagaaact
     1441 acaaatcaag aaagtaaatc aacagatgaa aacttaagta aaatagataa agttctaaac
     1501 actttagaaa atgatgaaaa cacttctcat aaagaaacaa atctaacctt aatccaagat
     1561 gcaaatatta gttttatcga caataccaaa ttagagctac aaaatggaga tgagttttta
     1621 tttatcggag attctttaat gcaaggtgtt gcaatagcct taaatagaga tttaagaaat
     1681 ttaaatctta aggtaaccga tcttagtaaa caaaatacag gcctttctta taaatcctat
     1741 tttgactggt caaaagccac taatgaagct tttattaaaa actcaaatat taaatatctt
     1801 gttgttcttc ttggcgctaa tgatccttgg gatattaaaa aaggaggaaa ttaccatcgt
     1861 tttggctccc tttcttggat agatatttac acaagtcgtg tagatgaaat cattaaaatc
     1921 gctaaaaaac ataaagccaa agttttttgg tttgaaatcc ctcctgtaaa aaaagaagat
     1981 ttgaacaaaa aaatacaagt gctcaataaa atttacagcg atgaaattct taaaaataaa
     2041 gaaattttta tcaacactaa gctatttttt agtgtcaatg atgaatactc agcttatata
     2101 aaagatgaaa acaatagaag tataaaagta agaacagatg atggggttca ttttactcca
     2161 agtggcgcaa gagaaatgtc taaactttta ttagaacaca taaaacttaa ggaagaaaat
     2221 gctagtaaat aaatttaaaa ttatcttatt gttttttatt atttttacta gctcttatgc
     2281 acaaaattta aatacaaatg acacaataga ttccatactc aatcaaaaca aaaatcactc
     2341 tgctttaaca agttatgtat taaaaaaaga tcttaaaaat ctagaaaaaa aattagaaaa
     2401 aaatcaaaac ataggaatta gaatttatgg agattctcat atggcggctg atttctttcc
     2461 gcgtgtcata agaggatatt taatccgctc taactctata ggttttgcct atcctttaca
     2521 gcccaaatat caacaaaatc ttaatcttgt ttattcttat aaaaactttg aaattttaaa
     2581 ctcaagaaat cctgctaatg ctggacataa ttttccatta ggtgggataa tagccaaagc
     2641 aaaaatcaaa ggcgcaaaaa tcaaccttga tacaacctta gataaaaaaa aattcaagat
     2701 aggattttta tttaaagcca aacaaaatac caatgctttt agcatcaaag atgcaaaaaa
     2761 ccaaagctat gagttaagaa ctacacaaat taacaaatgg tcttataaag aactagaact
     2821 tgatcttcct ttgcaaattt cagccttaca aaaagatgct gagctaggag gatatttcat
     2881 cacaaataaa gataataatg ttttcttaga taccattgca atcaatggtg ccaaaagtga
     2941 tttatggctc tcttggaatc aaacagttgt aaaaaaagaa ctaggacttt tacacaatga
     3001 tttaattatt cttgcctatg gttctaatga tgcactcttt aaagggtttg aaaaacaaaa
     3061 atttaaaaac aatttaaaaa aatggattag tattttaaaa acttacaata aaaacgctgt
     3121 tatcatgcta atctctccac caaccgtagt tcaaaaacaa ggtaaaaact acaagcttgc
     3181 tcctgatttt tttaccatac gcaaagcatt atatgaagtt gctaaagaag aaaaaactct
     3241 tatctttgat atgcatcagt ttatgcaaga tagtggggga aaaaacaaat ggatagaaca
     3301 aaagctttcg ctcaatgatg tacatcttac tataaaaggc tatgagctaa tggctaaaaa
     3361 gttactcgag gatttaaaaa atatcatcga ttattaaatt taatacttag gaaattctaa
     3421 gtttttatca ttaaaactta aagctgtgat ttgatagtaa gaattaatgg tttttaaaag
     3481 attaaatcta gctcttaaaa attcttgctg ggtagaattt aaagtattgt ttgcatccaa
     3541 ataatctttt aattcgcttt ttcctaaaat atatttttca taatacgcct tagtgataag
     3601 ctcttgttta atgttaatat tttgcaaatt ttgcaagagc aaggtatcgc tttgataatc
     3661 tttataattc aatgcaaatt cattcatcgc gctttgcaag acttgctcat aagaaattaa
     3721 aagttgctca taagcaaatt gtgaaatttt gatattttgc tttaccctac cataatctaa
     3781 gaaaggtaaa gaaatcttaa cattaccact taaaatttca aatttaaaac tatcatcaat
     3841 ttttttatca ctcccactta atgctccacc taaagaaata ctaggcaaaa tagatttttg
     3901 catagaagaa taatccttaa aggctgattt taagctattg agtttagatc tcacatctgc
     3961 acggtacgct aaagctttta aaggtatatt aaaatcagga cttaaggttt taaaatcatt
     4021 taaagataaa gttttaaaat actctatata agcaaaacct tcttgccttg ccaataaatc
     4081 ttgtaaattt tttatgagta aattacgatt ttgatcattg cttaataaat tttgtttagc
     4141 tcttaataag ctttgttcta tgtttaaaag atctaattct tctatttttc caagcttgta
     4201 tttatagtta taaagctctt tcatttgttc taaatttgaa agataagctc gaagcaattt
     4261 atctacatcg ttaaaataag ccagctcaaa cacatcattt aaagctgtat tgatcatact
     4321 tatttttaaa ttttcaagat cataagcact tgcttttgca ctaaattcac tcgcacttgc
     4381 actatctctt aatttaccat aaatatcaag ctcatagctt aaatttaaag aattattgaa
     4441 atttttactt tgtttgcctg aatttaaatc tttatccgca ccaaaaccca aatttccact
     4501 taaagtcgga tataaatcat aatcaatcaa atcagctcta gccaaagccg aaagcaaagt
     4561 ttttctagca atattaatat cactattatt caataaaaca aaatttagaa attcatttaa
     4621 ttttgcatta tcataagatc tataccaatc ataagtaaga tttaaatctt tcatttgttc
     4681 ttgagttaaa tcaacttctt taggcaagct aagttttaca ccacaagcgc tcaagaaaaa
     4741 tgctaaaaaa atgctaagta ttattttcat tttattcctt tgataatgca ctaataggat
     4801 ttaaatttgc tgcatttctt gcagggaaaa aaccaaaaac cacaccgata aacatagaac
     4861 ttaaaagtcc caaaagcaca gaataggcat ttaaaatcat aggaaaatcc gtacttaaag
     4921 tattaaaagc aaaaataaca aaaatcgata aaatcacacc taaaatcgcc cctatagtac
     4981 aaatcataac cgcttcgatt aaaaactgca tcataatatc ttctcttcta gcccctatag
     5041 ccatgcgtat gcctatttct cttgttcttt cacttacaga aacaagcatg atattcatca
     5101 ctcctatacc cccaacaatc aaagcaatca cagccacaca agcggtaagt atggttgtag
     5161 tgcgtttatt tgctgtaata gcttgcttaa aagtgtcaga attaaaagta aaaaaatcct
     5221 tttgtccgcg tttaatttct aaaattctta taatagcatt ttcagccaaa gttgaactca
     5281 catcatcttt aaccttaact atgatttcac gcaaatttct atctcctgta agcttattca
     5341 tcagtgttgt atagggtata taaaaacgta ctacattatc ttctataggc ttgtctgtat
     5401 ctttttgcaa aactcctata atcttaaaag gttgagaatt aaaaagcacc acacgaccta
     5461 aaatattttc acttttttca tcaggaaaaa gatttttttt agcattaaaa tccaatacag
     5521 caacattggt actatttttt acatcatcat tatttaaaat tcttcccgca tctatcctta
     5581 aaccttctat agcaaaatta tttaccccta ctccttcagc tcttgcgctt aaagaaatat
     5641 tggtataagt tgccactcct gaagtatttg aatgagcatc aactgcttct aaatattcta
     5701 aagatcttaa tgtttctaaa tcactaaaat taagccttgt tttacccgaa cgcaaatccc
     5761 caaatccttt tccagggcga atttcaatag tatttgtccc aagtcttgca atagactcaa
     5821 gcactttagc ttgagagcct aatcctaaag ctacaacaca aactacagaa gcaataccta
     5881 tgatgattcc aagcatagtt aaaatagaac gaagtttgtg tgcaagtatg gaagaataag
     5941 ctatcttaaa acattcaaag gcttgatttt taagcaaagt aagtgttttt ttctctttgg
     6001 gcattgtttt taaaataagt ttttcttgag ctttttcctt tttagtatcg cttaaaattt
     6061 ctccatcttt aatctctata acccttttag cttgtgctgc aatttttgga tcgtgagtta
     6121 ctaagactat agtatgacct tgctcgttaa gtttttgtaa aatttcaagc accataatac
     6181 cgcttttact atccaaagct cccgttggct catcagccaa aataagctct ccgccattga
     6241 ttaaagctct tgctatagaa acgcgttgtt gctgccctcc gcttaattcg tttggcttag
     6301 aatctaactt gtgagctaat tctaaatcat ttaagagttt tttagcattt tgacttcttt
     6361 cttgtaaatt ttttcccgca taaactgcag gtaaagaaac attttcttta gcactcagca
     6421 agcttaaaag attgtatctt tgaaatataa agcctatttt ttcacgcctt aatcttgctt
     6481 tttcatcatt attaagttta gtgacttcat actcatcaaa aacataagtt ccactacttg
     6541 gtgtatctaa tgttcctatg atattcaaaa gtgaagtttt accacttcca ctttgtccta
     6601 taatagcaac aaattcacct ttttctatac ttaaacttac attttttaaa atggcatttt
     6661 cgcctatatt tttgcaaata tttttaagaa aaatcattaa aatctcaact tcattttagg
     6721 agctaaacca tcagcacttg agcttactat caattcttca tcttcattta caccttctaa
     6781 aatttgagta ttgatagaat ctttaatgcc aagtttgaca tattttttaa cagctttttg
     6841 attttccaaa atttcaacat aatagccttt tggatcgctt ttaattgcat aagttggcac
     6901 tgctaaaaca gcctttgcac ttgctacgac aatttcattt tgtatactca taccaatacg
     6961 caaaaaatca tctttattgg ctacataaaa ttttgcgtaa taataaatag catttgatga
     7021 gcttgagctt gaagaactcg aacttgatga gcttgagctt gtactagaat cactcacttc
     7081 agtatcagct ggatctatac ttgcaatctt agcatgataa gttttttgag gatcattaag
     7141 caaagaaaaa tcaagctctg ttcctacttt tatcttactc acatcagcct ctgctatttc
     7201 cattcttact tccatttcgt ctaaattagc tatacggact atagtaggag tgttttgatt
     7261 agcattaact gtttgtcctt catctacagc tacattaatc acaacaccat ccataggagc
     7321 agtaatggtt gtataaccta aatctttttg tgcattttta agagtgattt caagctgaac
     7381 tacttgagca ttaagctctg caacattggc ttttaaagta taataattat ttttttgagt
     7441 ttctaaattt tcaagagaac ttgctttagc tgcataaagt ttttgctctc tttgatattg
     7501 cttattcgca atctcaaggg caactttttt actctctaaa ttagccttag cactttcaag
     7561 ctgagctttt gtaatatcta aatcgttttg ttgtttatct ttatcaattt gagcgatcaa
     7621 atcaccttgc tttacatgag ttcccacatc aacataaagt tttataattt gtccactaac
     7681 ttgagcaccc acatcgactt gatctttggc atataccttt cctactgcct ctatggtttg
     7741 agatatatct tttttttgta ttttttgagt taaatagctg attttttcat cattattaaa
     7801 aaaaataaaa taagccccaa cacttccaag tattgcaatt aaaatgatta aaacaatctt
     7861 ctttttcata ataacaaatc ctaaagaaaa atcaagatta aattttactc attttttgtg
     7921 aattttttgt gaatttttaa ttctatttta taaatttaaa aattctaaag ccatcatcac
     7981 atcaccctgc attaaaactt ttaaattttc atcatcccaa caaaaagtag aactatgatg
     8041 caaagctgga tgatttaaat cctttgaaat tccaacaaat acataagccc ccattctttc
     8101 tcgtgttaaa aaagcaaaat cttcagcccc catgtcaggt ttagaagaaa caatgatatt
     8161 ttcttctcct aagacctttg caaaagcttt tcttgctatt aaaacagctt tttcatcatt
     8221 aatcaatgga ggaaattctt tagtatattt aagcttataa tctccgccat tggattttgc
     8281 tgtagcagca gccacttctt ctaaagaact ttttaaaata tcttgcgttt tatcatttaa
     8341 aaagcgcaca gttcctttta aataagcatt tgtaggaata acattataag tagttcctgc
     8401 acaaatttga cctacggtaa tcacccctgc ttcataaggg gctaaacgtc tagaaataac
     8461 actttgtata ttatttacaa attgcgttgt cataattata ggatctatac aagtgtgcgg
     8521 atgagctcca tgccctcctc tgccaataaa ttccaaatca aaaatatccg ttccagccat
     8581 catttcacca cttacaattt gagcagtatt ttcaagcaaa ggcccccata aatgacaacc
     8641 aaaaactgca tcaacataag gattttccaa tacacctgat tctatcatag gtttagctcc
     8701 accgcttccc tcttctgcgg gctgaaacat aaatttaatc gtgccacaaa attcatcttt
     8761 aagctcattt aatatcaaag cagctcccaa aagccctgct gtatgtccat catgtccaca
     8821 tgcatgcatc ttaccatcaa tttttgaagc atagcttaaa ttagtttttt cttgcacagg
     8881 caaagcatcc atatccgctc ttaaaagaac acattttggt tttttctgac tcttcttttt
     8941 tccttctata atagctaaaa ttcctgtttt tgcaatattt ttttgatatt taatgccaaa
     9001 ctcatctaaa attttacaca ctaaatgggc tgtattttct tcttcaaatt caagctcagg
     9061 atgcatatga atttgatgtc ttaaatcaac tactttatca tagtacttta gtgctaaatt
     9121 ttcaaccagc ttttgcattc ttttccttaa tctaaatctt ttattttctc atctgctttt
     9181 ttactgtcaa gtttttccaa attcgcctcc atttttcgta tttcttcttc tccactacgc
     9241 actaattttg catcaatttt ggaaaaatct ccagtttttt tatttggata ttctacctta
     9301 gaaagtataa aacgcaataa atttaatctt gcttttttct tatcatcaga agaaataata
     9361 gtccaaggac aagttggagt attagatgct aaaagcatag agtatttagc taaagtatat
     9421 ttatcccata attcttgcga tttttgatcc acaggagata atttatattg tttaagtgga
     9481 tcgcttcggc gtttttcaaa acgttttttt gctcgtcttt tgatactgaa aaataaaatt
     9541 taaaaaaaat aatatcacta tttgaaatca tattttcaaa caaaggcact tctcttaaaa
     9601 aatctttatg ttgttgcggt gtacaaaaac ccataaccgg ttctactcct gcacgattat
     9661 accaagatct gtcaaaaatc acaatctcac cggctgaggg caaatgtgct atataacgct
     9721 gaaaatacca ctgtgttttt tccacatcac taggtttttc aagagccaca acgcggcaac
     9781 cacgcggatt taaatgctca atcaaacgtt taatcgcccc accttttcca gccgcatcac
     9841 gcccttctat aagtataaga acctttaaac ccttggcttt aacatgattt tgaaatttca
     9901 aaagctcaat ttgcaaattc tttaaatctt tttcatattc tattgtactt ttctttcttt
     9961 taacagaaac ataaatttca ttctttttaa caaccgcttg cgcttttgga gaattatttt
    10021 cttgtatttt caaaccttta taaagtattt aaagtaaatt taccataata aattataatt
    10081 gaagttaaaa ataaaggaaa aaataagttt ttaggaaatt tatgcgtatt tttggtatta
    10141 ttttattaag tttttgttta tgttttgctt ctatattatc tttaaatgaa gcttttaatg
    10201 taaaatcaaa ctcttataat aactctatct caattgatat tga
//
LOCUS       DAPIWJ010000061        10166 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.061, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000061 DAPIWJ010000000
VERSION     DAPIWJ010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10166)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10166)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10166
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.061"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(109..666)
                     /locus_tag="RJ259_001228"
     CDS             complement(109..666)
                     /locus_tag="RJ259_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HDV7366929.1"
                     /translation="MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVR
                     GGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHP
                     ESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVP
                     AKTRDANAKAFDLGVKYATQAKPYS"
     gene            complement(663..1508)
                     /locus_tag="RJ259_001229"
     CDS             complement(663..1508)
                     /locus_tag="RJ259_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HDV7366930.1"
                     /translation="MAFNYDEYLRVDKMPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCSGRMSSYVNCNTVHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIG
                     GNHTIHGCRRNIDLTHIVINNFIYGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACEL
                     TKAAGASFVARGNVIEANKLENLIYKALAHKGYSFVDVFSNCHINLGRKNKMGEAVAM
                     LDWIKNRVVDKAKFESMDFEERKDKFPTGILHEDNSQPEYCHAYEEVRRAAKEKRMVD
                     LGALK"
     gene            complement(1509..2633)
                     /locus_tag="RJ259_001230"
     CDS             complement(1509..2633)
                     /locus_tag="RJ259_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate synthase subunit alpha"
                     /protein_id="HDV7366931.1"
                     /translation="MREVIATGNVLIAKAAIDCGCKFFGGYPITPSSEIAHELSHMLP
                     ANDGTFIQMEDEISGISVAIGAAMSGVKSMTASSGPGISLKAEQIGLAFIAEIPLVIV
                     NVMRGGPSTGLPTRVAQGDLFQAKAPTHGDFASIAIAPASLEEAYTETIRAFNLAEKY
                     MTPVFLLMDETVGHMNGKAVLPDLKDIKVYNRKKFEGDKKDYKPYAAGENEPATLNPF
                     FTGYRYHVTGLHHGDIGFPTEDGVIVKKNMERLIGKIKNNQEDICTYEEYMLDDAEFL
                     IIAYGSVSRSAKEAIQRLREQGIKVGLFRPITLYPVAEKKIAEVVSKFKKVMVSELNM
                     GQYLEEIERVTSRRDFISLHRANGRPITPSEIIAKVKENI"
     gene            complement(2642..2953)
                     /locus_tag="RJ259_001231"
     CDS             complement(2642..2953)
                     /locus_tag="RJ259_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HDV7366932.1"
                     /translation="MSMTAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLG
                     QMIEVVHPESCIGCTECETHCPDFAIMVAKRDEFKFAKLTAEAKDRAVAVKNNKYKKL
                     A"
     gene            complement(2968..3837)
                     /gene="sucD"
                     /locus_tag="RJ259_001232"
     CDS             complement(2968..3837)
                     /gene="sucD"
                     /locus_tag="RJ259_001232"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HDV7366933.1"
                     /translation="MSILVNKNTKVIVQGFTGKEATFHAEQCMAYGTNIVGGVTPHKG
                     GQTHLGKPVFDTVADAVKATKADVSLIFVPAFAVGDSVIEAADAGIKLAVVITEHTPV
                     KDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGIMPGFIFKKGCVGLISKSGTLTYE
                     AANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFQKDDETKAIIMIGEIGGSLEVEA
                     AKFIKENISKPVVAFIAGATAPKGKRMGHAGAIVGSADESAAAKKEALKSYGIHVVDS
                     PALIGEEIQKILG"
     gene            complement(3847..5010)
                     /gene="sucC"
                     /locus_tag="RJ259_001233"
     CDS             complement(3847..5010)
                     /gene="sucC"
                     /locus_tag="RJ259_001233"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HDV7366934.1"
                     /translation="MNIHEYQAKAIFADNGIPTLKGKVAFSVDEAVANAKELGGSVWA
                     VKAQIHAGGRGLGGGVKIAKNLDEVKDYTSKILGINLVTHQTGPEGKLVQKLYIESGA
                     NIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHG
                     LEVARVLGLDKDEGKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSF
                     DDSALYRHPEIAELRDITEENPAEREAAEFGLSYVKLDGDVACMVNGAGLAMATMDII
                     NYSGAKPANFLDVGGGASPETVAKAFEIILRDKNVKVIFINIFGGIVRCDRIANGILE
                     ATKNVEVNIPIVVRLDGTNAAEAKTILDNSNLKNIKAATNLKNGAELVKSLVG"
     gene            complement(5011..5913)
                     /locus_tag="RJ259_001234"
     CDS             complement(5011..5913)
                     /locus_tag="RJ259_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HDV7366935.1"
                     /translation="MKITVIGAGNVGSSVAYALILREIANEIVLVDINEDLLYAKELE
                     LTQSIAALNLNIDLLCTKDYTHTKNSDIVLFSAGFARKDGQSREELLQLNTSIMLDCA
                     KKIKDFTEDPLFIILTNPVDFLLNTLYESGIFSSKKIIAMAGVLDNARFKYELAKKLN
                     VKMSRVDTRLIGFHNDDMVLVKSYASVKNKNISEFLNEEEFEDLENEVKTGGAKVIKH
                     LKTSAYLAPASACIRMLESIRSGEFLPMSVILHGEFGVQNKALGVMARLGLEGVIEIM
                     KMDLSLQEKDKLEKSLIKYQYKGE"
     gene            complement(5910..8114)
                     /locus_tag="RJ259_001235"
     CDS             complement(5910..8114)
                     /locus_tag="RJ259_001235"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HDV7366936.1"
                     /translation="MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGR
                     ILATFSEYLKEEQRCEDALELLGELVKRSDANLIKTPNISASIPQLKAAIKELQDKGY
                     MLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV
                     EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEI
                     LDATFMDVQKLQEFYTKEIKASKDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELF
                     IEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYNEILAKSADISMVNSDKGIT
                     NLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNG
                     TLNPSKLGSVSNVGLMAKKAQEYGSHDKTFVAKEEGTFKIVSNGKVLLEHKVRKGDIY
                     RANQAKFDAVLNWIDLGIERSELSGAEAIFWLDSKRASNKIMITLVQNRLKEKGKNVA
                     ILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVVPMLNGG
                     AMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCGNHKAKVLAECL
                     DEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFANHLARQASDMELQSFFKDIALEL
                     SSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRPSATFNAILEKIGQR"
     gene            complement(8231..>10166)
                     /locus_tag="RJ259_001236"
     CDS             complement(8231..>10166)
                     /locus_tag="RJ259_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HDV7366937.1"
                     /translation="KRIELPQSLNLWVAYRAKGEFYHLDYLQGFIDFTKDNYYLDNIS
                     ASGYVNNVKVRLDDKMNAIEIPKLDLNLNKQKLDFVFNKAFYNGADLSSSKVYLYDLF
                     DEKKVGIYLRIKSDNLKFDEKLAKALEDYHFSLPFYQKSGKIKSDLELKIDFHDKGEI
                     SYSGILALENASISLADFNITKAFVKLNQNDLNIENASVKNGFLEADFNAKFDLQKQQ
                     GNFNTQISRLYFDNGELLDLKNQNVEVKLDYSQNVNISIPQWNLILNFKDGLEANLNN
                     PKILFSFSPLLKKLGFIDAKNVYYKTLNFEDFNASVNDTYFKNNLLINGQTPYENDSF
                     DIVKNKGIMEIHTQSDTASAKISSDNKEIHLKNLSYIYRKHSNSSNSTFDIATNTQNI
                     SFGGANVALILADSNKTLAFDRVEADLKGNALDLKGSRGNAKFDLYYSSNDLNLNVSN
                     IDDNYLNEFLQKQAVQDGVFNLSIKGSGLEYFDGQIDFKNTYVKDLRGINQLISFIDT
                     VPSLLMFKSPTFNQKGLSLHDGKIIFNRKKDLLSVSAINLNGDSVDIYGLGSANLRLN
                     TVDFSLELKTLKSASEAISKVPILNYVILGKNQEISTNLKIDGSIDDPKFHTEILTDT
                     LKTPFNLIKNIIQLPANLLN"
BASE COUNT         3220 a         2034 c         1268 g         3644 t
ORIGIN      
        1 tataaaattt taatcgttaa aagtagctaa attaaaataa ttaaaattta aattttattt
       61 gcaatgtgta aaattttaga agttaaattc cgcatgatgc ggaatttatt atgaatatgg
      121 ttttgcttga gtggcgtatt ttacacccag atcaaaagct ttagcatttg catcacgagt
      181 ttttgcagga accatatgaa gcatagtttc ttttaaaaca tctaaatcta tacatttgct
      241 catataagca gcaattgcaa gtgcaacaac tgattgagta gccacatttc ctacctcatc
      301 tttagctatg gtaataatag ggatttcaaa aatttgccat tttttataat cttcactttc
      361 aggatgtact aaatttggct ctacaactat aatacctcct tcttttacac ccccacgaaa
      421 acctttataa cccttatctg cagtcgaaag cataaaatct acttcccctt ctacagcata
      481 aggaaataaa atttctttat catcaatgat aatatccacc ttagtaggac cgccacgcac
      541 ttgtgaagta taagtagaag ccttaaaagc ttgacgacct tctttaatgg ctgcttctgc
      601 taaaatttct cctgcggtga taacaccttg tccgccttca ccgccaaatc ttaattgata
      661 tttcatttta aagctcctaa atccaccatt cttttttctt tggctgcacg acgtacttct
      721 tcataagcgt ggcagtattc tggctgagaa ttatcttcat gtaaaattcc tgttggaaat
      781 ttatcttttc tttcttcaaa atccatgctt tcaaatttag ctttatccac aacacgattt
      841 ttaatccaat caagcatagc tacagcttcg cccattttgt tttttctgcc tagattgata
      901 tgacaatttg aaaaaacatc tacaaaacta taacccttat gcgctaaagc cttataaatt
      961 aaattttcaa gcttattagc ttctatcaca ttaccccttg ccacaaaaga agctcctgca
     1021 gctttagtta attcacacgc atcaaaattg gggtcaatat ttccaaattg agctgttact
     1081 gtataaaaac cttttggagt agttggactt gtttgagaat ttgtaagtcc atagatgaaa
     1141 ttattgatta caatatgtgt taaatcaata tttctgcgac aaccatgtat ggtatgattt
     1201 ccaccaattg ccaaagtatc cccatctcca cttactacaa taacatgttt actaggattg
     1261 gctagtttaa tgcctgttgc ataagctatt gctctaccat gagtagtatg aactgtattg
     1321 caatttacat aagaactcat tctgccacta caacctatac ccgaaacaag acaaacatca
     1381 tccatattcc aaccaagttt ttctatcgcg cggataatac attttaaaac aacaccatcg
     1441 ccacatcccc aacaccattg agtaggcatt ttatctactc ttagatattc atcataatta
     1501 aaagccattt atatattctc ctttacctta gcaataattt cacttggagt gataggacga
     1561 ccatttgcac ggtgcaaact aataaaatcg cgacgcgaag ttactctttc aatctcttca
     1621 agatattgtc ccatattaag ctcgcttacc attacttttt taaatttgct tacaacttca
     1681 gcgatttttt tctcagccac tggataaaga gtaatcggac ggaaaagccc cactttaatc
     1741 ccttgctctc ttaatctttg tatagcttct tttgctgaac gactcacgct tccataagca
     1801 atgattaaaa actcagcatc atcaagcata tactcttcat aagtacaaat atcttcttga
     1861 ttgtttttta ttttacctat gagtctttcc atattttttt tcactataac tccatcttca
     1921 gttggaaaac ctatatctcc atgatgaagt cctgtaacat gataacgata acctgtaaag
     1981 aaaggattta aagttgcagg ctcattttct cctgctgcat aaggtttata atccttttta
     2041 tcgccttcaa attttttacg gttatatact ttaatatctt ttaaatcagg taaaaccgct
     2101 ttaccattca tgtgccctac agtttcatcc ataagtaaaa atactggagt catatatttt
     2161 tcagctaaat taaacgctct aatggtttct gtataagctt cttcaagact tgcaggagca
     2221 atagcaatac ttgcaaaatc cccatgagtt ggtgctttag cttgaaacaa atctccttgt
     2281 gctacacgag ttggaagacc tgttgaagga ccacctctca taacatttac aatcacaagt
     2341 ggaatttcag caataaatgc aagtcctatt tgctctgctt ttaaagaaat tccaggaccg
     2401 ctacttgcag tcatggattt tactccactc attgccgcac caatagccac gctaatacct
     2461 gaaatttcat cttccatttg tataaaagtt ccatcatttg caggaagcat atggcttaat
     2521 tcatgagcta tctcactact aggagtaata ggataacctc caaaaaattt acatccacaa
     2581 tcaatcgcag ctttggcgat taaaacatta cctgttgcta taacttctct cattattttt
     2641 cctatgctaa ttttttgtat ttgttatttt ttacggctac agctctatct ttagcctcag
     2701 cagtaagttt ggcaaattta aattcatctc tttttgccac cataatagca aaatcagggc
     2761 aatgtgtctc acactcggta cagcctatac aggattcagg gtgtactacc tctatcattt
     2821 gtcctaaaac cgcatgcaca tcatcgcgca tagctaaaac cccagcgggg caatagctaa
     2881 cacaaatatt acatgcttta catctatgct catctaccca aacaggggta tcttttggag
     2941 ctgtcatact catgtttttt tcctttatta acctaatatt ttttgaattt cttcaccaat
     3001 taaagccgga gaatccacca catgaattcc atagcttttt aaagcttctt ttttagctgc
     3061 agcactttca tcagcacttc ctactatggc acctgcatgc cccattcttt tgcctttagg
     3121 agcagttgca cctgcaatga atgctaccac aggtttgcta atattttctt taataaattt
     3181 agccgcttcc acttccaaac taccaccaat ttcgcctatc attataatag ccttagtttc
     3241 atcatctttt tgaaattcac ttaaaagttc tttataagca agacctatga taggatcacc
     3301 gccaattcct actgcagtag aaattccata accaccttga actacctgat tagcagcttc
     3361 ataagttaaa gttccacttt ttgaaataag ccccacgcaa ccttttttaa aaataaaacc
     3421 tggcataatt cctaatttgc attcttcaga agtgataata cctggacaat ttggtccaat
     3481 gattttcata ccctttttat tagcatattg cttagcaaac atcatatctt ttacaggcgt
     3541 atgctcggtg attacaactg caagcttaat acccgcatca gctgcttcaa tcacgctatc
     3601 acccacagca aaagcaggga caaagatcaa gctcacatca gcctttgttg ctttaaccgc
     3661 atctgcaacg gtatcaaaaa ctggtttacc taaatgagtt tgtccgcctt tatgaggggt
     3721 gacacctcca actatatttg taccataagc catgcattgc tcagcgtgaa aagttgcttc
     3781 tttacctgta aaaccttgaa ctattacttt tgtattttta ttaaccaata tactcatttt
     3841 ccatccttat cctactaaac tttttacaag ctctgcaccg tttttaagat tggttgctgc
     3901 tttgatattt ttaagatttg aattatctaa aattgtcttt gcttctgctg cgttagtgcc
     3961 atcaagacgc actacaattg gaatatttac ctcaacattc ttagtagctt ctaaaattcc
     4021 atttgctatc ctatcacaac gaacaatacc accaaagata ttgataaata taacttttac
     4081 atttttatct cttaaaataa tttcaaaagc ctttgcaaca gtttctggag aagctccccc
     4141 acctacatct aagaaatttg caggttttgc accactataa ttaataatat ccatagttgc
     4201 cattgctaga cccgcaccat ttaccataca agctacatct ccatctaatt tcacatagct
     4261 taagccaaat tcagccgctt ctctttcagc aggattttct tcagtaatat ctctaagttc
     4321 agcaatttca ggatgacgat aaagcgcact atcatcaaaa ctgcattttg catcaagggc
     4381 ataaaaatcc ccttctgcag ttttaattaa aggattaatt tcaagcatat tcatatcttt
     4441 atccatgtaa agcttataaa gtttagctat catagaaatg agttttttgc cttcatcttt
     4501 atcaagtccc aaaactctcg ctacttcaag tccatgaaac attttaaatc caatttgtgg
     4561 atcaatacct acttttgcaa ttttttcagg actttctttg gctacttttt ctatatccat
     4621 ccctccttca cttgaagcga taatggtaat ttgctctgcc attctattaa acaaaatagc
     4681 caaataatac tcttttacta tattagcgcc actttctata taaagttttt gcacaagttt
     4741 gccttcaggt cctgtttgat gagttactaa atttattcct aaaattttac ttgtgtaatc
     4801 ttttacctca tctaaattct tagcgatttt aacaccacca ccaagaccac ggcctcctgc
     4861 gtgaatttga gctttaactg cccaaacact accgcctaat tctttagcat tagccacagc
     4921 ttcatctacg ctaaatgcaa cttttccctt taaggtaggg ataccattgt ctgcaaaaat
     4981 tgcttttgct tgatactcat gtatgttcat ttattctcct ttatattgat atttgattaa
     5041 agatttttct aatttgtctt tttcttgcaa actaagatcc attttcatga tttcaatcac
     5101 accttcaagt cctaatcttg ccataactcc caaggctttg ttttgcactc caaattcccc
     5161 atgtaaaatc acactcatag gtaaaaactc gccacttctt atagactcaa gcattcttat
     5221 acaagcacta gcaggggcta aataagctga agttttaaga tgtttgatta ctttagctcc
     5281 gcctgtttta acttcatttt ctaaatcctc aaattcttct tcatttaaaa attcgcttat
     5341 atttttattt ttaacacttg cgtaagattt taccaaaacc atatcatcat tatgaaaacc
     5401 aataagtctt gtatccactc ttgacatttt gacattaagt tttttggcaa gttcatactt
     5461 aaatcttgca ttgtctaaaa cacccgccat ggctataatt ttctttgatg aaaaaatccc
     5521 gctttcataa agagtattaa gtagaaaatc cacaggatta gttaaaataa taaaaagcgg
     5581 atcttctgta aaatctttaa tttttttagc acaatcaagc ataatgcttg tatttaactg
     5641 aagcaattct tctctacttt gcccatcttt tctagcaaaa cctgcactaa aaagcactat
     5701 atctgaattt ttggtatgag tataatcttt agtgcaaagt aaatctatat ttaaatttaa
     5761 agcagctatg ctttgagtaa gctctagttc ttttgcgtaa agcaaatcct cgttaatatc
     5821 tactaaaaca atttcatttg ctatttctct taaaatcaaa gcataagcta cgcttgaacc
     5881 tacattgcca gcccctataa cagtgatttt catctttgtc ctattttttc taaaatagcg
     5941 ttaaaagttg cacttggacg catgatttta tttgcttttt catcatcaaa tttataatac
     6001 ccacccaaat ccactttcac accttgtgca tcgttaaatt cggctctgat tttttcttca
     6061 ttagaagaaa gctctagggc aatatcttta aaaaagcttt gaagctccat atcacttgcc
     6121 tgtcttgcta aatgatttgc aaaatacatt gctaaataaa aatgacttgt tctattatca
     6181 tcttctttga cttttcttga tggagcttta ttattttcaa gccattcgcc tatagcctca
     6241 tcaagacatt ctgctaaaac cttagcttta tgattgccac acttatttgc ataaaattcc
     6301 aaacttgctt gcaaagccaa aaattcaccc aaactatccc aacgcagatg attttcttcg
     6361 actaattgtt ctacttgttt aggtgctgaa ccccctgctc ctgtttcaaa catagctcca
     6421 ccatttaaca taggcacaac agaaagcatt tttgcacttg ttccaagctc taaaatagga
     6481 aaaagatcgg ttaaataatc ccttaaaaca ttacccgtga tagaaataac atctttacct
     6541 tctcggatta actctaaact tcttaaacaa gcttcttttg gagttaaaat ggctacattt
     6601 ttaccctttt cttttaaacg attttgtacc aaagttatca tgattttatt actagctctt
     6661 ttgctatcta accaaaaaat agcttcggct ccactaagtt ctgatctttc tatacctaaa
     6721 tcaatccaat ttaacactgc atcaaattta gcctgattag ctctataaat atcacctttt
     6781 ctaaccttat gttctaataa aactttaccg ttagaaacta ttttaaaagt tccttcttct
     6841 ttagccacaa aggttttatc gtgcgatcca tattcttgag cttttttagc cattaaacct
     6901 acattagata cactgccaag ttttgaagga tttaaagtac catttttatg caaatcttca
     6961 ataaccgcct cataaatagt tgcgtaagtt tgatcaggaa ttacggcatt tgtgtccttt
     7021 tccttacctt ccttatccca caatcttgcg ccatttttaa gcattgcagg catagaagca
     7081 tcaacgataa catcgcttgg aacatgaaga tttgtaatgc ctttatctga atttaccata
     7141 gaaatatctg cagatttagc taaaatttca ttgtattttt ttaaaatttc atcttttttg
     7201 cttgaatttt cgatcttact taaaagctca cttaaaccat tatttggatt aatgcctaat
     7261 ttttcaaatt catcttgaaa ttcgataaat aattctttaa aaaatacttt taccgcataa
     7321 ccaaaaagta taggatcact tactttcatc attgtagctt ttaaatgcaa agaaaaaagc
     7381 acatcatcat ctttgcttgc tttaatttct tttgtataaa attcctgaag tttttgcaca
     7441 tccataaaag tagcgtctaa aatttcattt ttttcaagtt ttaagccctc ttttaaaatt
     7501 tcttttttac catcaacgct tgtaaattct atattagcca cacaatcttg atcgattaaa
     7561 accgcttttt cattagagaa aaaatcccct tctttcatgt aagaaacacg agtttttgag
     7621 tttggattaa actcaaccac acgataagga ttgttttttg cataatcttt taccgctttt
     7681 gttgaacgac gatctgaatt tccttgtctt aatacaggat taactgctga acctaaaact
     7741 ttttgatatt ttgttttaat ttgcaattct tcatcatttt ttggctcatc tgggtaattt
     7801 ggtaacatgt aacccttatc ttgcaattct ttaatcgccg ccttaagctg aggaatagaa
     7861 gctgaaatat ttggggtttt aataagattt gcatccgatc ttttgacaag ctcacctaaa
     7921 agttctaaag catcttcaca tctttgttcc tcttttaaat actcactaaa agtagctaaa
     7981 atccttccag acaaagaaat atccgaggtt tttactccta tatgtgccct acttaaaaaa
     8041 gctttcacta taggcaaaaa cgaataagtc gcaagagctg gagactcatc tgttaaggta
     8101 taagtaattt gcatttttag tcctttaaaa tacttatttt tattttcatt tttaagtata
     8161 ttacaaataa aaaaaaatgc aagagtaagt ttaaagtttg ttttagtttt caaacaaact
     8221 ttaaatattt ttaattaagt aaattagcag gaagttgtat gatattttta ataagattaa
     8281 aaggggtttt tagggtatct gttaaaattt cggtatgaaa tttagggtca tctatacttc
     8341 catctatttt taagtttgtg ctaatttctt gatttttacc taaaattaca taatttaaaa
     8401 ttggaacctt ggatatagct tctgaagctg attttaaagt tttaagctct aaactaaaat
     8461 ccactgtatt taatcttaaa tttgctgatc ctaaaccata tatatctaca ctatcgccat
     8521 ttaaattaat agctgaaaca cttaaaagat ctttttttct attaaaaata atctttccat
     8581 catgtaagct taaacctttt tgattaaaag ttggagattt aaacatcaat aaacttggta
     8641 cagtatcgat gaaggaaata agctgattta tacctcttaa atccttcaca taagtatttt
     8701 taaaatcgat ctgtccatca aaatactcca atccacttcc ttttatactt aagttaaaca
     8761 ctccatcttg aacagcttgt ttttgtaaaa actcatttaa ataattatca tcaatattgc
     8821 taacgtttaa atttaaatca ttagaagaat aataaagatc aaattttgca tttcctctag
     8881 aacctttaag atctaaagca ttgcctttta aatcagcttc tactctatca aaagccaaag
     8941 ttttattaga atctgccaaa attaaagcta catttgctcc accaaaacta atattttggg
     9001 tattagtagc aatatcaaat gttgaatttg aagagttgga atgttttcta taaatataac
     9061 ttaaattttt taaatgaatt tctttattat cagaacttat tttagcactt gctgtatcac
     9121 tttgagtatg aatttccata atgcccttat tttttacaat atcaaagcta tcattttcat
     9181 aaggagtttg accgttgata agtaaattat ttttaaaata agtatcatta acacttgcat
     9241 taaaatcttc aaaatttaaa gttttataat aaacattttt agcatcgata aacccaagct
     9301 ttttaagtaa tggagaaaat gaaaataaaa tcttaggatt attaagatta gcctcaagtc
     9361 catctttaaa atttaaaatc aaattccact gaggaatgct aatattaaca ttttgcgaat
     9421 aatctaattt tacttctaca ttttgatttt ttaaatctaa aagctctcca ttgtcaaaat
     9481 aaagccttga aatctgagta ttgaaatttc cttgctgttt ttgtaagtca aatttagcat
     9541 taaaatcagc ttctaaaaag ccatttttaa cactggcatt ttctatattt aaatcatttt
     9601 gatttaattt tacaaatgct tttgtaatat taaaatcagc caaagaaata ctagcattct
     9661 ctaaagctaa aataccacta taagaaattt cacccttatc atgaaaatca attttaagct
     9721 ccaaatcact tttaattttt ccgctttttt gataaaaagg tagtgaaaaa tgataatcct
     9781 ctaaagcttt agcaagtttt tcgtcaaatt ttagattatc agacttaatg cgcaaataaa
     9841 tcccaacttt tttttcatca aacaaatcat atagataaac cttactagaa cttaaatcag
     9901 caccattata gaaagcttta ttaaagacaa aatcgagctt ttgtttgttt aaatttaaat
     9961 cgagttttgg aatttcaata gcattcattt tatcatccaa gcgaactttg acattattaa
    10021 cataacctga tgcactaata ttgtctaaat aataattatc tttagtaaaa tctataaagc
    10081 cctgcaaata atctaaatga taaaattctc ccttagccct atatgctacc caaagattta
    10141 aactctgcgg aagttctatt ctttta
//
LOCUS       DAPIWJ010000062         9815 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.063, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000062 DAPIWJ010000000
VERSION     DAPIWJ010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9815
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.063"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            11..1441
                     /gene="glnA"
                     /locus_tag="RJ259_001237"
     CDS             11..1441
                     /gene="glnA"
                     /locus_tag="RJ259_001237"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HDV7366938.1"
                     /translation="MGKFVNNIDDFFKFCKQNEVLFVDFRFTDMIGTWHHITYNLHAI
                     NEETFQTGIPFDGSSIHGWQPIEKSDMILKPDAQSAFLDPFTADPTIIVFCDVYDIYK
                     GQMYEKCPRSIAKKAIEHLKNSGIADTAYFGPENEFFVFDSVKIVDTTHCSKYEVDTE
                     EGEWNDDREFTDSYNTGHRPRNKGGYFPVQPIDSLVDIRSEMVQTLEKVGLKTFVHHH
                     EVAQGQAEIGVNFGTLVEAADNVQIYKYVVKMVAHLNGKTATFMPKPLYGDNGNGMHV
                     HMSLWKNGVNLFYDKDGYSGLSQTAINYIGGILKNARSVAAFTNPSSNSYKRIVPGFE
                     APCILTYSCQNRSASCRVPYGIGKNSARIEIRFPDSTANPYLAFVSLLMAGLDGIKNK
                     TIPVGPMDENLFDLTLDEIREKGIEQLPHTLRGSLEALIRHNSYLKPVMSDIFIDDYQ
                     HLKFETQVWPVEARPTAYEFKTCYSC"
     gene            complement(1508..2299)
                     /gene="flgG"
                     /locus_tag="RJ259_001238"
     CDS             complement(1508..2299)
                     /gene="flgG"
                     /locus_tag="RJ259_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HDV7366939.1"
                     /translation="MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADL
                     MYQVMKYAGTSTSATTLSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNG
                     FFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSV
                     MLPGEQQETQIGQVELVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHG
                     FIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR"
     gene            complement(2328..3140)
                     /locus_tag="RJ259_001239"
     CDS             complement(2328..3140)
                     /locus_tag="RJ259_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein"
                     /protein_id="HDV7366940.1"
                     /translation="MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADF
                     KRIFKETQDELPIENHTRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMT
                     REDAFYLVQTKDGEVRLTKDGNFQLDDEGYLVNKQGYKVLSSDYFNNPQNAGIRIPNG
                     AVQISVDKNGSIEVDGAQNARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAI
                     RQGFSQGSNVNPVTEMVGLIEANRMVEMYQKVMTAHMDDLNQEAINKLAAVK"
     gene            complement(3296..4408)
                     /gene="ftsZ"
                     /locus_tag="RJ259_001240"
     CDS             complement(3296..4408)
                     /gene="ftsZ"
                     /locus_tag="RJ259_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HDV7366941.1"
                     /translation="MSEFLVEEMQHNKGAKIKVIGCGGGGGNMINHMVKMGLNDLDLI
                     AANTDAQAISISLAKTKIQLGEKKTKGLGAGMLPEVGAESARESFEEIKASLSQSDIV
                     FIASGFGGGTGTGATPVIAQAAKEIGALTVSVVTMPFAFEGKQRKKLAESGLLELKKE
                     SDSILVIQNEKLLSIIDKKAGIKDAFRLVDDILARAVKGMVSILLDNGDINVDFADVR
                     TIMSHRGLALMGVGSASGENAIEEALSNAIESPLLDGMDIKGAKGVILHFKTSSNCSL
                     FEISAAANSIQEIVDENAKIIFGSTTDDSMEDRVEVTIIATGFEDKDTVAKKSTEEAQ
                     ASKKNPYLSLKKVSGGYDEEIMAQIETPTFLRRQMD"
     gene            complement(4424..5812)
                     /gene="ftsA"
                     /locus_tag="RJ259_001241"
     CDS             complement(4424..5812)
                     /gene="ftsA"
                     /locus_tag="RJ259_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HDV7366942.1"
                     /translation="MILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGA
                     ITNIELASKSIEEAVRSAEMMSGVHYDRVVVSISGAYTKSVDSIGVVNIPNHEIGIKE
                     IHRAVSTAKHTANLPSGYEIIHVLPYNFKVNDLEHVDDPLGMSGNRLEVSTHIVISQE
                     SHIKNLKKAVELADLRVDNIVLSGYASAIACLDDSEKELGAVLIDMGGAICDMVVHTG
                     NSIRYNDCLQIGSINITQDLSMALHTPLKEAEKIKLNYAALSQQPNTLIQIPSMGDER
                     KVNEVSLDIISNVIYARAEETLMILAKILSDNRYANAIGGGVVLTGGMTKLAGIDELA
                     PATFDNRSVRLATARKDLITGFSEIFNDPENTCAIGLCLYGAGYFTPYELDSNEKLRY
                     KGEIENFNRQIKQDIVLQKDTESEIKSDFFDENLQENDTIAIQEQLDFKEPKEKKPSV
                     FSNIWHKIMNQF"
     gene            complement(5809..7299)
                     /locus_tag="RJ259_001242"
     CDS             complement(5809..7299)
                     /locus_tag="RJ259_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDV7366943.1"
                     /translation="MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYDFNLNRSSSV
                     ATVGNEKIGFSEFDTRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLN
                     FAKDLGIGVNENQILQKLANTREFQDPTGDFNKTIYYELLNANNLAPKDYETQLANEV
                     ITDKLNQIFNIPSKDEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHK
                     EDYKTKKIYEISTYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEV
                     AKDYALMQLKNVANAKFLDLKNGKDNFQKDQNISESDVYYPIDLLNKAKNGDVLRPAP
                     YNNGYIIVKLNKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSLVNFKGDDIG
                     FVSRDSSRESVKVSDKILNDSEFAYFLMNVFNTDQNSSYVVINDNKAILYKINKQKLD
                     MNSDKFEQYKTMLEQNLQNLKANELKQELVDELKKIYPIKIYYKGN"
     gene            7458..8396
                     /gene="rsmH"
                     /locus_tag="RJ259_001243"
     CDS             7458..8396
                     /gene="rsmH"
                     /locus_tag="RJ259_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HDV7366944.1"
                     /translation="MILEIPHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKN
                     HPDLKFIACDQDQQALKFSKKRLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIG
                     VSSFQLDNNERGFSVNSDFLDMRMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAH
                     FIAEKICLERSKNPIKSAKELYQIIGKGKQNHRKISKATLAFQAIRIEVNQELKVLKD
                     FLEHLENLKPKNCILAIISFHSLEDRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQ
                     IITKKAISASKEELLKNSRSSCAKMRAFYFNNLDNK"
     gene            8396..9334
                     /locus_tag="RJ259_001244"
     CDS             8396..9334
                     /locus_tag="RJ259_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366945.1"
                     /translation="MLEDDFIKERQNIRQKMLKFSRAINQGKPLDDDLRDEISSDDIL
                     RRRFKKKTPNKFLEELDEEYESKHTKKSNIYLKEDLINVKLEEKQSLAKKIFSKMKER
                     RKEENKKTKKNFLFSRKKANEIKNIQTKTQIQTKSNQATTQTKQEKKELTNSIEKIQK
                     TETKIQKPLIIEKKLDVKNQPNIKKSLENLQKKITPQENKQELPKPSNQAQEKQQNDE
                     DAQKAKNILLEGFSNATKEDRNLNFNHLLFAALLVSFALFLFAPQIYIRNQIYYLSRE
                     IATLRTEESVLNEENKDLKRRLENMRFQNQILDYLE"
     gene            complement(9322..9813)
                     /locus_tag="RJ259_001245"
     CDS             complement(9322..9813)
                     /locus_tag="RJ259_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366946.1"
                     /translation="MKKFKEFSLRFLFKVSEQPVLIRDLLEANALFNDGMLVDPSKLN
                     FNFKILNSYIYFGVFCAVILLPLLLITHYFLTKLDFHISIVSAVMVTACVFIGYDIFK
                     VYTRKIISKKIIQKAWALHFPYFAYEKYSTMAGEFYKEALKEEIPKANLEQYVLDKII
                     HSK"
BASE COUNT         3429 a         1696 c         1326 g         3364 t
ORIGIN      
        1 gagtaaaaat atgggaaaat ttgttaataa tatagatgat tttttcaaat tttgcaaaca
       61 aaatgaagtg ctttttgttg attttcgttt tacagatatg ataggaactt ggcatcatat
      121 tacctataat cttcatgcaa tcaatgaaga aacatttcaa actggcattc catttgatgg
      181 aagctcaatt catggatggc aacctataga aaaatcagat atgattttaa aacctgatgc
      241 tcaaagtgct tttttagatc cttttacggc tgatcctact atcatagtat tttgtgatgt
      301 gtatgatatt tacaaaggac aaatgtatga aaaatgtcca agaagcatag caaaaaaagc
      361 aatagaacac cttaaaaata gtggcatagc tgatactgct tactttggac cagaaaatga
      421 attctttgtt tttgatagtg taaaaatagt tgatactact cattgttcta agtatgaagt
      481 tgataccgaa gaaggagagt ggaatgatga tagagaattt accgatagct acaatactgg
      541 acacaggcca agaaacaaag gtggatattt tccagttcag ccaattgatt ctttagtaga
      601 tattcgttct gaaatggttc aaacccttga aaaagtaggt cttaaaactt ttgttcatca
      661 tcatgaagtt gcacaaggac aagctgaaat aggagtaaat tttggcacgc ttgtagaagc
      721 agctgacaat gttcaaattt ataaatatgt tgtaaaaatg gtagctcatt taaatggcaa
      781 aactgccact tttatgccaa aacctttata cggagataat ggcaatggta tgcatgttca
      841 tatgagctta tggaaaaatg gagtaaattt attttacgat aaagatggat acagtggact
      901 tagtcaaact gctataaatt atataggtgg aattttaaaa aatgctagaa gtgttgcagc
      961 ttttacaaat ccaagttcca actcttacaa aagaatagtt cctggctttg aagctccttg
     1021 tattttaact tattcttgcc aaaacagatc agcaagttgt cgcgttcctt atggcatagg
     1081 taaaaattca gctcgtatag aaattcgctt ccctgatagc actgctaatc cttatttagc
     1141 ttttgttagt cttttaatgg caggtcttga tggaatcaaa aataaaacca ttcctgtggg
     1201 tcctatggat gaaaatttat ttgatcttac tttggatgaa atacgtgaaa aagggataga
     1261 gcaattacca catactctaa gaggaagttt ggaagcttta atccgacata attcttattt
     1321 aaaacctgta atgagcgata tttttatcga tgactatcag catttaaaat ttgaaacaca
     1381 agtttggcca gtagaagctc gtccaactgc ttatgaattt aaaacttgct actcttgcta
     1441 aaaaatttaa tggcgtttaa cacgccatta aacaaaaaag aattaaaaat tatttatttt
     1501 atatcaacta tcgcttaagc tgatttacaa ttcctagcat atcatcactt gttgtaatgg
     1561 ccttagaacc cgcttcataa gctctttgtc ctgtgataag atctgtcatt tcttcaacaa
     1621 gctgaacatt actaagttct ataaatccat gtcttattgt tccaagccca tcttgtcctg
     1681 ctatacccgc aacaggtgca ccacttgctc ctgtttcaag ataaagatta tcacccatag
     1741 aatgaagacc cgctggattt ataaactgaa ctagctccac ttggccaatt tgagtttctt
     1801 gttgctcccc tggtagcatt acagaaacgg ttccatctgt agcaacatta attgctgttg
     1861 cgccttcagg tattgtcatt tcaggtaaaa gtctataacc atctgaattt acaatattac
     1921 cttcattatc ttttgtaaat tgcccatttc tagtatatcc tatagtgcca tcaggaagtt
     1981 gtatttgaaa aaacccatta cctgcaatag ccatatcaag accatcagta cttgttgatt
     2041 ttaaatttcc ttcagtaaaa actttagtta ccgctgttgg acgcacaccc acacccactt
     2101 ctatacccga aggagaaaga gtagtagctg aagttgaagt tcctgcatac ttcataactt
     2161 gatacataag atcagcaaat tctgcgcgac ttttcttaaa acctgctgta ttaacattgg
     2221 cgatgttatt tgaagtaaca tcaatttgtg tttgctgcgc taccattcct gtagcagcag
     2281 tatgaagtga tctcatcatt tttaatcctt ttttatttta ttttaaatta tttaacagct
     2341 gcaagcttat tgatagcttc ttgatttaag tcatccatat gagctgtcat aactttttga
     2401 tacatttcta ccattctgtt tgcttcaatc agtcctacca tttcagtaac tggattaaca
     2461 tttgatccct gagaaaaacc ttggcgaata gcattggagt ttttcaaatc tctaatacgg
     2521 gttagatcat ctattttata gacattatcc ccatcttttt gcaaagctct tatatcatct
     2581 acttgtgcta caaataatct tgcattttga gctccatcaa cttcaatgct tccgttttta
     2641 tcaacgctaa tttgaacagc accattagga atgcgtatgc cagcattctg aggattatta
     2701 aaataatcac tacttaatac cttgtatcct tgcttattta ccaaataacc ctcatcatca
     2761 agttgaaaat ttccatcttt ggttaatctt acttctccat ctttggtctg aaccaaataa
     2821 aaagcatctt ctctagtcat tgccaaatcc aaaggattgt ttgtggcctt taaagaacct
     2881 aggctaaaat ccgtatattc ttgagaaact tgtgggattc catctattgt agtatttaca
     2941 aaacgagatg catctcttgt gtgattttct ataggcaact catcctgagt ttctttaaaa
     3001 atccttttaa aatctgcaat aaccacatca tctcttttgt atccgcttgt attaatattg
     3061 gcaagattat tagtaatcac atcaagttta ttaaactgag ttaccattcc gccagttgct
     3121 tgataatatc cattttgcat attttcacct ataaatttaa gattttataa ctataaaagc
     3181 aaagagtgtt ccaactttta aaaacaaaga aaaataaata tttgaaagat tattaggaga
     3241 gaattttaaa ctataaaaag caagatttga ctcaatcttg ctttaaaaat caattttaat
     3301 ccatttgacg acgcaagaaa gttggtgttt caatttgcgc cattatctct tcatcgtaac
     3361 caccgcttac ctttttaaga cttaaataag gatttttctt agaagcttga gcttcttcgg
     3421 tagatttttt agctactgta tctttatctt caaaccctgt cgcaataata gttacttcaa
     3481 ctctatcttc catgctatca tctgtagtag aaccaaaaat aatcttagca ttttcatcaa
     3541 caatttcttg tatactattt gctgctgccg aaatttcaaa caaagagcaa ttagaacttg
     3601 ttttaaaatg taaaataact cccttggcac ctttaatatc cattccatca agcaaaggag
     3661 attctatagc gtttgaaaga gcctcttcta tagcattttc accgctagca ctaccaacac
     3721 ccataagcgc gagtccgcga tgactcatga tggttcttac atccgcaaag tcaacattaa
     3781 tatctccatt atcaagtaag atagacacca taccttttac agcacgagct aaaatatcat
     3841 caaccaacct aaaagcatct ttaatacctg cttttttatc aataatgctc aataattttt
     3901 cattttgaat tacaagaata gaatcacttt cttttttaag ctcaaggaga ccgctttcag
     3961 caagtttttt tctttgtttt ccttcgaatg caaaaggcat agttacaaca gaaacagtta
     4021 aagctccaat ctctttagct gcttgtgcaa taactggagt ggcacccgtt ccagtacctc
     4081 caccaaaacc tgaagcaata aatacaatat cactttgact aagacttgct tttatttctt
     4141 caaaactttc tctagcactt tctgcaccta cttcaggaag cataccagcg cccaaacctt
     4201 tagttttttt ctcgccaagt tgaattttag tttttgctaa tgaaattgaa atagcttgtg
     4261 catcagtatt cgctgcaatt aaatcaagat catttaatcc cattttaacc atatggttaa
     4321 tcatattacc gccaccgcca ccgcagccta taaccttaat ttttgcacct ttattatgtt
     4381 gcatttcttc tactaaaaat tcactcataa aaatttctcc ttgttaaaat tgattcataa
     4441 ttttatgcca gatatttgaa aaaacactag gttttttttc ttttggctct ttaaaatcta
     4501 attgttcttg tattgcaatt gtatcatttt cttgcaaatt ttcatcaaaa aaatcagatt
     4561 ttatttcact ttctgtatct ttttgcaaaa caatatcttg tttaatttga cgattaaaat
     4621 tttcaatttc ccctttatat cttaatttct cattagaatc aagttcataa ggcgtaaaat
     4681 atcccgctcc atataaacaa agtcctatag cacaagtatt ttcaggatca ttaaaaattt
     4741 cactaaaacc agtaatcaaa tcttttcttg cagtagccag tctaactgag cgattatcaa
     4801 atgttgcagg agctagctca tcaatacctg ctaacttagt cattccacct gttaaaacaa
     4861 ctccgccacc tatagcattg gcataacgat tatcacttaa gatttttgcc aaaatcatca
     4921 aagtttcttc cgctcttgca taaattacgt ttgaaataat atccaaagaa acttcattaa
     4981 cctttctttc atcacccatt gaaggaattt gtataagggt attaggctgt tgtgaaagag
     5041 ctgcataatt aagcttgatt ttttctgctt cttttaaagg tgtatgcaat gccattgata
     5101 aatcttgagt gatattaatc gagccaattt gcaaacaatc attatatcta attgaatttc
     5161 cagtatgaac aaccatatca caaatcgctc cacccatatc aatcaaaaca gcacctaatt
     5221 ccttttcgct atcatctaaa caagctatag ctgaagcata tcctgaaaga actatattat
     5281 ccactcttaa atcagctaat tcaaccgctt tcttaagatt tttaatatga gattcttgtg
     5341 aaatcactat atgggttgaa acttctaaac gattgccact cattcccaaa ggatcatcaa
     5401 catgttcaag atcattaacc ttaaaattat aaggcaaaac atggataatt tcataaccac
     5461 ttggtagatt ggcagtatgc ttagctgtac ttacagcacg atgaatttct ttaatgccta
     5521 tttcatgatt tggaatatta acaacaccta tgctatcaac gcttttagta taagcacctg
     5581 atatagacac cacaacccta tcataatgaa ctccgctcat catctcagca cttctaacag
     5641 cctcttcaat agatttagaa gcaagctcta tattggtaat ggcacctttt ttaaccccgt
     5701 tggttttcga cttggaaaaa ccaataattt ttaatccatc ttcatctttt tgagcaataa
     5761 tggcacaagt ctgggttgag cctaagtcaa ttcctaatat attcaaaatc aattcccttt
     5821 ataataaatt tttatcggat atatcttttt aagttcatca acaagttctt gcttaagctc
     5881 atttgctttt aaattttgca aattttgttc aagcatagtt ttgtattgtt caaatttatc
     5941 ggagttcata tctaattttt gtttatttat tttatataat attgctttat tgtcattaat
     6001 gaccacataa gaactatttt gatcagtatt aaatacattc attaaaaaat aagcaaattc
     6061 agaatcgttt aatattttat cgctaacctt tacactctcg cgagaactat ctcgacttac
     6121 aaagcctata tcatcgcctt taaaatttac taaactattt ttagcttttt cttctaaatt
     6181 ttttctagct tgttcgctta aatacatagg taaaacttct tctctagctt cttcaaaagt
     6241 tttatttctt ataggatcta ctttatttag tttaactatg atatatccgt tattataagg
     6301 tgctggccgt aaaacatctc catttttagc tttattcaaa agatcaattg gataataaac
     6361 atcagattca ctaatatttt gatctttttg aaaattatct ttcccatttt ttaaatctaa
     6421 aaatttagca ttagccacat tctttagttg cattaaggcg taatctttag caacttcatt
     6481 tttagcagac tgaaaatcca tcactttacc tgcaaaatct ttatatttta gtttattttc
     6541 atcttgatta taaaattttt ctaattcttt gtcgtcaatt ttctcattgc taactggcaa
     6601 aaaataagtt gaaatttcat atattttttt agttttataa tcttctttat gttcattcca
     6661 aagctttttt aaatcctctt cgttaatctt aatatttttt ttgtcataat caatttttgc
     6721 aatacttaaa gcatcttgca tgaaataact agaagctaac atttttaatt cctcatcttt
     6781 gctaggaata ttaaaaattt gattaagttt atcggtaatt acttcatttg caagttgtgt
     6841 ttcataatct tttggagcta aattattggc atttaaaagt tcataataaa ttgttttgtt
     6901 aaaatcccct gtaggatctt gaaattctct agtatttgca agtttttgta aaatttgatt
     6961 ctcgttcaca ccaataccca aatctttggc aaaatttaac aaaagcttat cttcaacaag
     7021 agagcttaaa gctatatttt taatgcctag ttgctcagca ttttctggag ttaaagcacc
     7081 attgctaatt tgattataat aacttaaaat ttgtctatat ctagtatcaa attcgctaaa
     7141 acctatcttt tcatttccta cagttgcaac actcgaactt ctattgagat taaaatcata
     7201 agcaccccaa cctaaaaagc cagcgccaac aaaagctata gtactaaccc atatagtaac
     7261 aacaagatat tttttgtgat gttgcatcca agtaagcata tcattccttg attaaattta
     7321 aaccagatat tgtatcgtag aagtgtttaa gtggagttta attataaaat ttttaccaaa
     7381 aaatatttgt tctttaaatt ttatgatttt tacaatgaaa tttagttata attatagttt
     7441 ataaaaattt attaggattg attttggaaa ttcctcatat cccagtttta cttaatgaag
     7501 ttcaagagat ttttaaaaat cttaaaacag gttatttttt agactgcact ttaggatttg
     7561 gcggacatag tgaagctttg cttaaaaatc atcctgatct taaattcatt gcttgtgatc
     7621 aagatcaaca agctttaaaa ttttctaaaa aacgtcttaa agattttcgc aataggataa
     7681 cttttatgca aagtaatttt agtgaagttt tagaaaaaat ttcacataaa gaagaattaa
     7741 gaggtatttt agcagacatt ggagtttctt catttcagct tgataataac gaaagaggtt
     7801 ttagtgtaaa ttctgacttt ttggatatga gaatgaatca aaactccaaa atatcagctt
     7861 atgagattat taatacttat acaaaagagc aattaacttc catttttaaa gattatggag
     7921 aattacatga tgcacatttt attgctgaaa aaatttgcct agaaagaagt aaaaatccaa
     7981 tcaaaagcgc caaagagctt tatcaaatca taggaaaagg taaacaaaat catagaaaaa
     8041 tttccaaagc tactttagca tttcaagcca ttagaataga agtaaatcaa gaacttaaag
     8101 tgcttaaaga ttttcttgaa catttagaaa atttaaaacc aaaaaattgc attttagcta
     8161 tcattagctt tcattcttta gaagatagaa tagtaaaaca atttttcaaa aaatggtcaa
     8221 aaaactgcat ttgtaatgaa aaaataatgc gttgcgaatg tggaaataac catagcctag
     8281 gacaaataat aactaaaaaa gctataagtg cgagcaagga agaactttta aaaaattctc
     8341 gctctagttg tgctaaaatg cgggcttttt attttaataa tttggacaat aaataatgct
     8401 agaagatgat tttataaaag aacgccaaaa catacgccaa aaaatgctga aattttctcg
     8461 cgccataaat caaggcaaac cgcttgatga tgatttaaga gatgaaattt ctagcgatga
     8521 tattttaaga cgtcgtttta aaaaaaagac tcctaataaa ttcttagaag aactcgatga
     8581 agagtatgag tcaaaacata ctaaaaaatc aaatatatat ttaaaagaag atctaatcaa
     8641 tgttaaatta gaagaaaagc aatctcttgc taaaaaaatt ttttccaaaa tgaaagaaag
     8701 aagaaaagaa gaaaataaaa aaactaaaaa aaatttttta tttagcagaa aaaaagcaaa
     8761 cgaaataaaa aatatccaaa ccaaaacaca aattcaaaca aaaagcaatc aagctaccac
     8821 tcaaacaaaa caagaaaaaa aggaacttac aaattctata gaaaaaattc aaaaaacaga
     8881 aactaaaata caaaaacctc taattataga aaaaaaacta gatgttaaaa atcaacctaa
     8941 tatcaagaaa agtttagaaa atttacaaaa aaaaataaca ccacaagaaa ataaacaaga
     9001 acttccaaaa ccatctaatc aagctcaaga aaaacaacaa aatgatgaag atgctcaaaa
     9061 ggcaaaaaat attttactag aaggcttctc taatgctacc aaagaagata gaaacctaaa
     9121 cttcaatcat cttctttttg cagctttact tgttagtttt gcattatttt tatttgcccc
     9181 acaaatttat attagaaatc aaatttatta tcttagtaga gagattgcta cattaagaac
     9241 agaagaaagt gttttaaacg aggaaaataa agacttaaaa agaagacttg aaaatatgcg
     9301 attccaaaat caaattttag attatttaga atgaataatc ttatctaaaa catactgctc
     9361 taaatttgct tttggaattt cttcttttaa agcttcttta taaaattcac ccgccattgt
     9421 agagtacttt tcataagcaa aataaggaaa gtgtaaagcc caggcttttt gtattatttt
     9481 ttttgagatt attttgcgag tataaacttt aaaaatatca tatcctataa atacacaagc
     9541 agtaaccata acagcgctca ctatgcttat atgaaagtca agctttgtta aaaaataatg
     9601 agtaatcaaa agcaatggca ataaaatcac agcgcaaaaa acaccaaaat aaatataaga
     9661 atttagaatt ttgaaattaa aatttagctt agaaggatct acaagcattc catcgttaaa
     9721 aagtgcattt gcctctaata aatctcttat aagaacaggt tgctctgata ctttaaataa
     9781 aaaacgaagg ctaaattctt taaatttttt cataa
//
LOCUS       DAPIWJ010000063         9611 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.064, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000063 DAPIWJ010000000
VERSION     DAPIWJ010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9611)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9611)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9611
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.064"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..747)
                     /locus_tag="RJ259_001246"
     CDS             complement(<1..747)
                     /locus_tag="RJ259_001246"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HDV7366947.1"
                     /translation="MENLYALILGIIEGLTEFLPISSTGHMILGTTILGIDIDEFWKS
                     FLIIIQLGSILAVIFVFWRKLFQGLDIWLKLAVGFFPTGVIGLFVAKYLNALFNGWVV
                     VGMLIFGGVVFILIELAHKNKQYRINSLEEISFKQAFCIGIFQSLAMIPGTSRSGASI
                     IGGLLLEFNRKVAAEFSFLLAIPTMIIATAYSIYKEPELLGNANSLIPLGIGFITAFI
                     VAVLVIKFFLKFISKFDFIPFGIYRIILGFV"
     gene            complement(821..2818)
                     /locus_tag="RJ259_001247"
     CDS             complement(821..2818)
                     /locus_tag="RJ259_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HDV7366948.1"
                     /translation="MMYKKQNLPELTLRGLILGSILTIIFTASNVYLGLKVGLTFSSS
                     IPAVVISMAVLSLFKTSNILENNMVQTQASAAGTLSSVIFVIPGLFMCGYWSEFPLWQ
                     TFMICLCGGGLGVLFTIPLRRTMVVESKLAYPEGRAAAEILKVANKDQSSKKGKQGIK
                     EIALGSFIAAIFSLLSNGFKLAASESNFAFIWNKMAFGFSMGYSLALLGAGYLVGLAG
                     AIALFVGMFLAWGIFTPYLSNFEFDSTKNAVDLASSVWSSKVRLIGTGAIAIAALWTL
                     IELLKPVIEGIKEIVKNVKITNQEKNERTNIDLSLKSIFILFVLMVVGLFITFYSFVE
                     DANLSIYYQMLFSFVGTLVSVLIGFFVAAACGYMAGLVGSSSSPISGIGLIGVIISSI
                     VFLVLGVELFQDPMLSKFAVALAIFTTSVILATAAISNDNLQDLKTGHLVGATPWKQQ
                     VALLVGCVFGALAIVPVLNLLYQAYGFVGAMPREGMDASSALAAPQANLMSTIAQGIF
                     HHNIEWGYMAFGVFVGILMIIIDKILKGTQKMSLPPLAVGIGIYLPPAVNIPLVIGGI
                     LKYIVMQHLTKKYAKNSHKEEKLASCEQRGTLFASGLIVGESIFGVIIAGITVFSVSM
                     GGSENPLALNLANFHDSELFALIFFVGVVLYFIKRIVKKDA"
     gene            complement(3001..4155)
                     /locus_tag="RJ259_001248"
     CDS             complement(3001..4155)
                     /locus_tag="RJ259_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate transporter"
                     /protein_id="HDV7366949.1"
                     /translation="MKTLVAFIKDGVKSVTDTAALFVFSILFFSVLNASGFFTKILNA
                     FLSKMKANVYQVCILTVFIAAAVHLDGSGASTFLIVIPALLPIYERLGIRKTSMLLII
                     TSAMGVMNVIPWGGPTLRAATNIGMDANLLWHHIIPIQIVGLVLSLLLAIWIAKIEIK
                     RGAGAGNLSGINLNIEKSEHHNEKWFWLNLLVAIGVIGLLISGIIPSYIYFMIGLAII
                     LPLNYPNLKTAKKVLDRASAGAMLMYITLIGAGILIGVFDKSGIMEKMGVLILNFVPD
                     YLGAYIPLMVGILAVPMAIIFCTDSYFYGVMPIVLSVTKAFGAEPLTIAIIMVIARNC
                     ATFISPVVPATLLGCGLAEVNIKDHIKRSFFYIWGISIICLIFAEVAGII"
     gene            4118..4342
                     /locus_tag="RJ259_001249"
     CDS             4118..4342
                     /locus_tag="RJ259_001249"
                     /inference="COORDINATES: protein motif:HMM:NF015397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="HDV7366950.1"
                     /translation="MTPSLIKATNVLISKTPPLTPEQAHKNAVELAEHTKAWKGHEVL
                     IATHIDKGHIHTHFIVNSVNYENGHKLQWM"
     gene            4394..4768
                     /locus_tag="RJ259_001250"
     CDS             4394..4768
                     /locus_tag="RJ259_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001129922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TnpV protein"
                     /protein_id="HDV7366951.1"
                     /translation="MAKSLFEELGGKYERQGDYLIPCLTVPAEEEQAIGIWGQRHLDY
                     LKQYRKVTYTNLLTSGRLNAYLADINRQAQERFERLIEGMKQAQGITEQLKAENALEW
                     TGCLNNIRACAREIVEKEIIFA"
     gene            5135..7054
                     /gene="tet(O)"
                     /locus_tag="RJ259_001251"
     CDS             5135..7054
                     /gene="tet(O)"
                     /locus_tag="RJ259_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance ribosomal protection
                     protein Tet(O)"
                     /protein_id="HDV7366952.1"
                     /translation="MKIINLGILAHVDAGKTTLTESLLYTSGAIAELGSVDEGTTRTD
                     TMNLERQRGITIQTAVTSFQWEDVKVNIIDTPGHMDFLAEVYRSLSVLDGAVLLVSAK
                     DGIQAQTRILFHALQIMKIPTIFFINKIDQEGIDLPMVYREMKAKLSSEIIVKQKVGQ
                     HPHINVTDNDDMEQWDAVIMGNDELLEKYMSGKPFKMSELEQEENRRFQNGTLFPVYH
                     GSAKNNLGTRQLIEVIASKFYSSTPEGQSELCGQVFKIEYSEKRRRFVYVRIYSGTLH
                     LRDVIRISEKEKIKITEMCVPTNGELYPSDTACSGDIVILPNDVLQLNSILGNEMLLP
                     QRKFIENPLPMLQTTIAVKKPEQREILLGALTEISDGDPLLKYYVDTTTHEIILSFLG
                     NVQMEVICAILEEKYHVEAEIKEPTVIYMERPLRKAEYTIHIEVPPNPFWASVGLSIE
                     PLPIGSGVQYESRVSLGYLNQSFQNAVMEGVLYGCEQGLYGWKVTDCKICFEYGLYYS
                     PVSTPADFRLLSPIVLEQALKKAGTELLEPYLHFEIYAPQEYLSRAYHDAPRYCADIV
                     STQIKNDEVILKGEIPARCIQEYRNDLTCFTNGQGVCLTELKGYQPAIGKFICQPRRP
                     NSRIDKVRHMFHKLA"
     gene            7106..7279
                     /locus_tag="RJ259_001252"
     CDS             7106..7279
                     /locus_tag="RJ259_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich KTR domain-containing protein"
                     /protein_id="HDV7366953.1"
                     /translation="MMKCEWILCPVCGSKTRNKIRKDTVLENYPLYCPKCRQERLIKV
                     DNLKITVIKEPDA"
     gene            complement(7654..8945)
                     /locus_tag="RJ259_001253"
                     /pseudo
     CDS             complement(7654..8945)
                     /locus_tag="RJ259_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001274343.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(8932..9570)
                     /locus_tag="RJ259_001254"
     CDS             complement(8932..9570)
                     /locus_tag="RJ259_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS607-like element ISChh1 family transposase"
                     /protein_id="HDV7366954.1"
                     /translation="MNKLLSIGQASKALGVTIQTLRNWDKKGLLKPDDMTKGGERRYK
                     LETLKAINKNLVFNKDSLKTIAYARVSSHDQKDDLIRQVQVLELYCSKQGFNYEVIQD
                     LGSGMNYYKKGLTKLLNQILDGKVKRLVLTHKDRLLRFGAELVFAICEAKEVEVIIIN
                     KGEESVKFEEELAKDVLEIITVFSARLYGSRSKKNKKLLDEMQEVVVENVSK"
BASE COUNT         3403 a         1733 c         1574 g         2901 t
ORIGIN      
        1 aacaaatcct aaaataatac gataaattcc aaaagggata aagtcgaatt tagaaataaa
       61 ttttaagaaa aattttataa ctaaaactgc aacaataaaa gcagtgataa aacctatgcc
      121 taaaggaatt aaagaatttg cattgccaag aagctcaggc tctttataaa tgctataagc
      181 tgtagcgata atcatcgttg gaatggcaag caaaaaacta aactcagccg caacttttct
      241 attaaattct agcaaaagtc caccaataat acttgctcca cttcttgaag taccaggaat
      301 catggctaaa gattgaaaaa tacctatgca aaaagcttgt ttaaaactta tttcttctaa
      361 agaattgata cgatattgtt tatttttatg tgcaagttct ataagaataa acacaacacc
      421 gccaaaaatg agcattccaa ccacaaccca accattaaat aaagcattta agtattttgc
      481 cacaaaaagc cctataactc cggtaggaaa aaatccaact gcaagtttta accaaatatc
      541 aagcccttga aacaatttac gccaaaatac aaaaatgacc gccaaaatag aaccaagctg
      601 gatgataatc aaaaagcttt tccaaaactc atctatatcg atacctaaaa tagtcgtacc
      661 taaaatcata tgtcctgttg aagaaatagg taaaaactca gtcagacctt ctataattcc
      721 aagtattaaa gcatataaat tttccatttt aatccttgaa tgataattgc aaaagaaaaa
      781 ttatatcaga atggattaaa tggggtttta accccaaaaa ttaagcatct tttttaacaa
      841 tacgcttaat gaaatataat acaactccca caaaaaagat aagtgcgaaa agctcgctat
      901 catgaaaatt tgctaaattt aaagctaaag gattttcact accacccata cttactgaaa
      961 atacagtaat tcctgcgata attaccccaa aaatactttc acccactata agccctgaag
     1021 caaaaagcgt gcctctttgc tcacaacttg caagtttttc ttctttatga gaattttttg
     1081 catatttttt agtcaagtgt tgcattacaa tatattttaa aattccgcct ataactaaag
     1141 gtatatttac agcaggggga aggtaaatac ctattccaac ggctaaaggc ggcaaagaca
     1201 ttttctgtgt tccttttaaa attttatcta taataatcat taaaattcct acaaatacac
     1261 caaaagccat ataaccccac tctatattgt gatgaaaaat tccttgggcg atagtgctca
     1321 ttaaatttgc ttgcggtgct gctaaagctg atgaagcatc cataccttct cttggcattg
     1381 ctccgacaaa accataggct tgataaagca aatttaaaac aggaactata gccaaagcac
     1441 caaaaacaca gcctacaagt aaagcaactt gttgtttcca aggagtagct ccgactaaat
     1501 gtcctgtctt taaatcttgt aaattatcat tcgaaatagc agctgtagct aaaataacac
     1561 tagtagtaaa aatagctaat gctactgcaa atttagaaag cataggatct tgaaaaagtt
     1621 ccacacctaa aaccaaaaaa acaatagaag aaataataac accaataagt ccgattccag
     1681 aaataggact agaagaagat cctacaagtc ctgccatata tccgcaagct gctgcaacaa
     1741 aaaaacctat taaaacagaa actaaagttc caacaaatga aaatagcatt tgataataaa
     1801 tacttaagtt agcatcttca acaaaactat aaaaagtaat aaataaaccc acaaccatta
     1861 aaacaaaaag tataaaaata ctttttaaag aaaggtctat atttgttctt tcattttttt
     1921 cttgattagt aattttaaca tttttaacaa tttctttaat accctcaata acgggtttta
     1981 aaagttctat taaagtccaa agcgctgcta tagcaatagc tcctgttcct ataagcctta
     2041 ctttagaact ccatacacta gaagctaaat ctacggcatt ttttgtacta tcgaattcaa
     2101 aatttgaaag atagggagta aaaatacccc aagctaaaaa catacctaca aaaagagcta
     2161 tagcacctgc taaaccaact aaataacctg cccctaaaag tgccaaagaa tatcccatag
     2221 aaaaaccaaa agccatttta ttccaaataa aagcaaaatt actctcactt gcagcgagtt
     2281 taaaaccatt gcttaacaaa ctaaaaatag cagctataaa agagcctaat gctatttctt
     2341 taatgccttg ttttcctttt ttactactct gatctttatt ggctactttt aaaatttcag
     2401 ctgcggctct accttcagga taagcaagct tgctttcaac caccatagtc cttcttaatg
     2461 gtatagtaaa aagcactcca agtccgccac cacaaagaca tatcataaaa gtttgccaaa
     2521 gtggaaattc actccaatac ccacacataa aaagccctgg gataacaaaa ataactgatg
     2581 ataaagttcc tgctgctgaa gcttgagttt gaaccatatt attttctaaa atatttgaag
     2641 tcttaaaaag actcaaaacc gccatggaga tgaccacagc tggaattgat gatgaaaaag
     2701 taagtcccac ttttaacccc aaatatacat ttgaagctgt aaaaataata gttaaaatac
     2761 ttcccaaaat caaacccctt aaggtaagtt ctggtaaatt ttgttttttg tacatcattt
     2821 ctccgtttta aaatttactt tcaacttaaa aaatattctt ataagtttaa atttataatt
     2881 tttctctaaa gcaaaataaa ataatacaaa aaaacgctta tatttttata aatttttgac
     2941 tcaaaaatat cataaaacaa tgaaccaatc attgaaaaat caaaagttct tttattttaa
     3001 ttatattatc ccagctacct cagcaaaaat caagcaaata atacttatac cccatatata
     3061 aaaaaagctt cttttgatat gatctttaat attaacctct gctaaaccac aacctagcaa
     3121 agttgcaggc acaacaggag aaataaatgt cgcacaattt cttgctatca ccatgataat
     3181 agctatagtc aaaggttcag cgccaaaagc cttagttaca ctcaaaacta taggcatcac
     3241 tccataaaaa taagaatctg tacaaaaaat aattgccatt ggaacagcca atatccctac
     3301 catcaaagga atataagcgc ctaaataatc tggaacaaaa tttaaaatca aaacacccat
     3361 tttctccata ataccacttt tatcaaatac gcctattaat atcccagcac caattaaagt
     3421 aatatacata agcattgcac cagcacttgc acgatctaaa acttttttag ctgtttttaa
     3481 attaggataa ttaagcggta aaattattgc aagtcctatc ataaagtaaa tataactagg
     3541 aataataccg ctaattaaaa gcccaataac tccaatagct acaagtaaat ttaaccaaaa
     3601 ccatttttca ttatggtgtt cgcttttttc tatatttaaa tttattccag acaagttacc
     3661 tgcgcctgca cctcttttta tttctatctt agcaatccaa attgccaaaa gaagggataa
     3721 taccaaacct acaatctgaa taggtataat atggtgccaa agcaaatttg catccattcc
     3781 tatattagta gccgctctta aagtaggacc accccaagga ataacattca taacccccat
     3841 agccgaagta ataatcaata acattgaagt ctttcttata cctaaacgct cataaatagg
     3901 taataatgca ggtattacaa taagaaaagt agaagcacct gaaccatcta aatgcacagc
     3961 agcagcaata aaaacagtaa gaatgcaaac ttgatataca ttagctttca tttttgataa
     4021 aaatgcattt aaaattttag taaaaaaacc acttgcattt aaaacactaa aaaagagtat
     4081 agaaaaaaca aacaaagctg ccgtatccgt tacgcttttg actccatctt taataaaagc
     4141 aaccaatgtt ttaatatcaa aaacacctcc tttaaccccg gagcaggctc acaagaacgc
     4201 tgtcgagctg gcagagcata caaaggcatg gaaagggcat gaagttctga tagccacgca
     4261 tatagacaag gggcatatac acacgcactt tattgtcaat tccgtaaatt atgagaacgg
     4321 tcataagctc caatggatgt aggacggatt ttgcggacat tcaaaataaa aaagaatgtg
     4381 gaggtaacag acaatggcaa aatcattatt tgaggaactg ggcggcaaat acgaaaggca
     4441 aggggattat ttgataccgt gcttaactgt acccgccgaa gaagaacagg caataggcat
     4501 ctgggggcaa cggcatttag attatctaaa acagtaccgt aaagttacat acaccaatct
     4561 tcttacaagc ggcaggctaa acgcctacct tgccgacatc aacagacagg cacaggaacg
     4621 ctttgaaagg ctcatagagg gtatgaaaca ggcacagggc ataacggaac agctaaaggc
     4681 agaaaacgcc ttagaatgga caggatgcct caataacata agggcttgtg cgagggagat
     4741 tgtggaaaag gaaattattt ttgcataaac agatgattag tggcaggggg aaatcctgcc
     4801 gctttttctg ctttagtttg tcagcttgac aaataaaggg ttaaagaata taattagatt
     4861 cagtattata caaggagtta ataaatatgc ggcaaggtat tcttaaataa actgtcaatt
     4921 tgatagtggg aacaaaaagt agcagtcccg tttcactttt aatatggggc ttagtttttt
     4981 gtacccagtt taagaatact tttatcatgt gattttatat gcccgaaaac atataagtgt
     5041 tttggggcta ttggagttat ttacccagtg ataggagtat ttatcactgg gtatttttat
     5101 gccctttttt gggtgttgat aggaggaaaa tcacatgaaa ataattaact taggcattct
     5161 ggctcacgtt gacgcaggaa agacaacatt aacggaaagt ttattgtata ccagtggtgc
     5221 aattgcagaa ctagggagcg tagatgaagg cacaacaagg acagatacaa tgaatttgga
     5281 gcgtcaaagg ggaatcacta tccagacagc agtgacatct tttcagtggg aggatgtaaa
     5341 agtcaacatt atagatacgc caggccatat ggattttttg gcggaagtat accgttcttt
     5401 atccgtatta gacggagcag tattattagt ttctgcaaag gatggcatac aggcacagac
     5461 ccgtatactg tttcatgcac tacagataat gaagattccg acaatttttt tcatcaataa
     5521 aattgaccaa gaggggattg atttgccaat ggtatatcgg gaaatgaaag caaagctttc
     5581 ttcggaaatt atagtgaagc aaaaggttgg gcagcatccc catataaatg taacggacaa
     5641 tgacgatatg gaacagtggg atgcggtaat tatgggaaac gatgaactat tagagaaata
     5701 tatgtcaggg aaaccgttta aaatgtcaga actggaacag gaagaaaaca ggagattcca
     5761 aaacggaacg ttatttcccg tttatcacgg aagcgctaaa aacaatctgg ggactcggca
     5821 gcttatagaa gtaattgcca gtaaatttta ttcatcaacg cctgaaggtc aatctgaact
     5881 atgcgggcag gtttttaaga ttgaatattc agagaaaagg cggcgttttg tttatgtgcg
     5941 tatatatagc ggaacattgc atttgaggga tgttattaga atatctgaaa aagagaaaat
     6001 aaaaatcaca gagatgtgtg ttccgacaaa cggtgaatta tatccatccg atacagcctg
     6061 ctctggtgat attgtaattt taccaaatga tgttttgcag ctaaacagta ttttggggaa
     6121 cgaaatgctg ttgccgcaga gaaaatttat tgaaaatcct ctccctatgc tccaaacaac
     6181 gattgcagta aagaaacctg aacagcggga aatattgctt ggggcactta cagaaatttc
     6241 agatggcgac cctcttttaa aatattatgt ggatactaca acgcatgaga ttatactttc
     6301 ttttttgggg aatgtgcaga tggaagtcat ttgtgccatc cttgaggaaa aatatcatgt
     6361 ggaggcagaa ataaaagagc ctactgttat atatatggaa agaccgctta gaaaagcaga
     6421 atataccatc cacatagaag tcccgccaaa tcctttctgg gcttctgtcg ggttgtccat
     6481 agagccgctc cctattggaa gcggagtgca gtatgaaagc agagtttcac ttggatattt
     6541 aaatcaatcg ttccaaaatg cggttatgga gggggttctt tatggctgcg agcaggggct
     6601 gtatggatgg aaagtgacag actgtaaaat ctgttttgaa tatggattgt attatagtcc
     6661 tgtaagtacc cccgcagact ttcggctgct ttcccctatc gtattggagc aggctttaaa
     6721 aaaagcaggg acagaactat tagagccata tctccacttt gaaatttatg caccgcagga
     6781 atatctctca cgggcgtatc atgatgctcc aaggtattgt gcagatattg taagtactca
     6841 gataaagaat gacgaggtca ttctgaaagg agaaatccct gctagatgta ttcaagaata
     6901 caggaacgat ttaacttgtt tcacaaatgg gcagggagtc tgcttgacag agttaaaagg
     6961 ataccagcca gctattggta aatttatttg ccaaccccgc cgcccgaata gccgtataga
     7021 taaggttcgg catatgttcc acaagttagc ttaacagctt gcaaaagtca tataaaatga
     7081 gatttgaaag gattagagac taattatgat gaaatgcgaa tggatattgt gtcctgtttg
     7141 tgggagcaaa acccgtaata aaattaggaa ggacactgtt ttggagaatt atccccttta
     7201 ttgtccaaaa tgcagacaag aaagattgat taaagttgac aacttgaaga taactgtcat
     7261 caaagagcca gacgcttaag acgcagagcc gatgaaattg tggaacaatt cacgaatcat
     7321 cggctctttt tgtttcgtat ttgaaagaac aaactcacca aataaaaaaa acgatattcg
     7381 ggtgggttat tttgttatac cctaaattac cctctgagta agcacgacct taaagactta
     7441 aaggaacggt gcaacgagca gagctgggaa cagggcttgc atgtgccgga gaaaggaaag
     7501 acatttgctg gagaagtccg ggaagaaacg gtggcatgga gcaaagacac ctaccagctt
     7561 ttgaaacagg cagagcaggg aaaggtcaaa agctatgtgc aggatattgc cgttcctaca
     7621 aacctataaa atcctataaa aagatataaa actctataaa taggattttt gttgtattcc
     7681 tgtttcaacc ttgctagttg ctatttgatt tattgctaaa tcatttaaca gagctgtcaa
     7741 gtccgcaggc gtaaattcgg caagaacttt gcctattttt gctttaattg tgaaagcaaa
     7801 ttaagactag cattgtagtc tctatcaatg ctaattccac attcatcgca aatataaact
     7861 ctatctttta gagctaaatt ttcttttata gttccacaat tagagcataa tttagaacta
     7921 ggataaaatc tatctacttg atagatttct ttatcgttgt agctagattt atattctagt
     7981 tgccttttaa actcataaaa acttacatcg cttatagatt tagcaagtct atgattactc
     8041 atcatccctt ttacatttaa atcctctaag caaaaatatt tagcatttgc taccaagcta
     8101 gaagtaagct tgtgtaaaaa atcacttctt atatttgcta ttttacgatg caatttattt
     8161 agcttaatac ttgcttttag ataattgcta gattttttaa tgccttgtaa tgcttcttgc
     8221 ttggtttttg cgtgttgctt tttgcttagc tgtctagctc tttttatcat taaacgatta
     8281 aacttagcta atggtttagg tgcttttatc tctaagccat tagataaact taaaaacgat
     8341 tttaagccta catctatgct aagtgctaga ttattatttt tagctttatt atgagttttt
     8401 agatactcat ctttactaat ttgcatacta aaagaaacaa agaatttatc agcactttga
     8461 gaaatagtaa aagaattgat tttaccatta aatctcaatt tctctttcat ttttacaagt
     8521 cctaaatttg gcacttttag atatttttca tctttgatta ttgcttggtc tccacctatg
     8581 taataagagc cgaaattatc tttctttttc ttaaattttg gatagcttac tttaccttgt
     8641 tttaaatctc taaaaaattt ttgaaatgct agatttagat ttaaaaaagg ctgttgcgta
     8701 gcatatttac ttacttcata aacgaaagga aattgttctt tttttataac attaaactct
     8761 tttttaagct ctaaatgaga ttttttaatg ccttgcttat agtattcttg ccatttagca
     8821 agtccccaat tataagcaag tctagcacaa ccaaaggctt ttttaaaatg agttttagct
     8881 ttattatttg gctttaactc tatcttatga gaaatgctaa taagctcatt attatttgct
     8941 gacattttct accaccactt cttgcatttc atctaaaagt tttttatttt tctttgagcg
     9001 tgagccataa agtctagctg aaaatactgt gattatttcc aacacatctt tggctaattc
     9061 ttcttcaaat tttacgcttt cttcgccttt atttattatt attacttcta cttctttggc
     9121 ttcacatata gcaaatacta gctcagcacc aaagcgtaaa agtctgtctt tgtgagttaa
     9181 aactaatctt tttactttgc catctagaat ttgatttagc aatttagtta agcctttttt
     9241 ataataattc ataccagagc ctaaatcttg tataacttca taattaaagc cttgtttaga
     9301 acaatatagc tctaagactt gaacttgcct tattaaatca tctttttggt cgtggctaga
     9361 aacacgagca taagcaatag tttttaagct atctttatta aaaactaggt ttttatttat
     9421 agcttttaat gtttctagct tatacctacg ctctccaccc ttagtcatat catcaggttt
     9481 taataagcct tttttatccc aatttctaag agtttggata gtaacaccaa gagctttact
     9541 agcttgaccg attgataata atttattcat aggactattt tagcaaattt taaaaaataa
     9601 gtcaagtaaa a
//
LOCUS       DAPIWJ010000064         9397 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.065, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000064 DAPIWJ010000000
VERSION     DAPIWJ010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9397)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9397)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9397
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.065"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..312
                     /locus_tag="RJ259_001255"
     CDS             <1..312
                     /locus_tag="RJ259_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HDV7366955.1"
                     /translation="QCIAEIFGGRVSKMQNPMHGKISKLYFKKDPIFKGIKKEIEICL
                     YHSLHISSMPEKCKILAHNSENIIMAIKHKKYPIYGLQFHPEAVLTQKGKKILKNFMK
                     L"
     gene            439..867
                     /locus_tag="RJ259_001256"
     CDS             439..867
                     /locus_tag="RJ259_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366956.1"
                     /translation="MKIDTLTKNFSNYQTQINKNNDLASNVHSDNVVKIQISDEARSL
                     SQANSKNEKEYEIKVSQEKIENHKDQNSIQSSKGGGNPALEALIAKLAEILAKIAELT
                     QKMTNANEQMKTTFQKQIDVLISQADVIQAQIQELQSQQA"
     gene            933..2189
                     /gene="murA"
                     /locus_tag="RJ259_001257"
     CDS             933..2189
                     /gene="murA"
                     /locus_tag="RJ259_001257"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HDV7366957.1"
                     /translation="MTYLEIEGTNHLSGNVAISGAKNAALPLIVSSILAKNEVKINNV
                     PNVADIKTLISLLENLGAKVNFQNNSALLNTNTLNQTIAKYDIVRKMRASILTLGPLL
                     ARFGHCEVSLPGGCAIGQRPIDLHLLALEKMGANIQIKQGYVVASGNLKGNEILFDKI
                     TVTGSENIIMAAALAKGKTKLLNVAKEPEVVQLCEVLKDAGLEIKGIGTDELEIYGSD
                     GELLEFKEFSVIPDRIEAGTYLCAGAITNSKITLDNVNATHLSAVLAKLHQMGFETLI
                     AEDSIALLPAKEIKPVEIMTSEYPGFPTDMQAQFMALALKANGTSIIDERLFENRFMH
                     VSELLRMGADIKLNGHIATIVGGKELNAADVMATDLRASSALILAALAAKGTSKVHRI
                     YHLDRGYENLEEKFKDLGVKITRLEE"
     gene            2186..3346
                     /locus_tag="RJ259_001258"
     CDS             2186..3346
                     /locus_tag="RJ259_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HDV7366958.1"
                     /translation="MKNIFETLKDLENQISCLDESELISLEKAKDRILAKDLYARKNL
                     PSFDNAALDGYAFNYTDINEALEIKGTIFAGDKNFYTVAKNECYKIMTGAKMPKNADT
                     ILMLEDEYIEENKLIIKKTPKQYNAYRYKGEELKKGEILLQKGTKLNDKHIALLASQG
                     LYKIEVIRKIRIGIFSSGNELKEPWQECDEESIYNANALPLLTMLQNASYLGIIKDDF
                     KSTKEALENTNFDLLITSGGASVGEADFMEKALDELGFTPLFKGLKARPARPTKLYRK
                     GENFVLILPGNPMAAYLSCFIFAKKIINLLSGNLDNPLTFYGKMGMDLKLKSGRNNLI
                     LGNLEKGIFTPFNENKFGSGMILPLIKSEFLLISEENTSELKKGDEITLLKI"
     gene            complement(3368..4216)
                     /gene="lepB"
                     /locus_tag="RJ259_001259"
     CDS             complement(3368..4216)
                     /gene="lepB"
                     /locus_tag="RJ259_001259"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HDV7366959.1"
                     /translation="MEILKKLYKFSQSWTGTVVIVLLVIFFFIQAFVIPSGSMKNTLL
                     VGDFLFVKKFSYGIPTPHIPWLEIPVLPDFNKDGHLIKAQGPQRGDIVVFRNPRNEKE
                     HFVKRCVGTGGDRIVYANKTLYVRMHEGDEFMKEHYPNDLVTLGGQIYVKEPYKQKGI
                     HYDPKKDIESDILRFLSIGDFAMSPAYIKELGNHIGFSGGNAYVFDVPENEYFMMGDN
                     RDYSYDSRFWGSVPYRLIVGKPWFVYFSWDKDKNVRWERIGRFVDTLENDEQYIHDHD
                     DEDKLS"
     gene            complement(4226..5074)
                     /gene="folD"
                     /locus_tag="RJ259_001260"
     CDS             complement(4226..5074)
                     /gene="folD"
                     /locus_tag="RJ259_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HDV7366960.1"
                     /translation="MTLLDGKALSAKIKEELKEKNQFLKSKGIESCLAVILVGDDPAS
                     QTYVKSKAKACEECGIKSLVYYLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHI
                     CKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEIDLEGKDA
                     VIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDM
                     VKEGVIVVDVGINRLESGKIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKS
                     AKNRLN"
     gene            5154..5501
                     /locus_tag="RJ259_001261"
     CDS             5154..5501
                     /locus_tag="RJ259_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366961.1"
                     /translation="MKIVLMFFLFSISLFGADFITLKEYSKMLYENPRGISCKECHGA
                     NGSEQILGYYMKNGIKTAYKVPSIQNLSFENFKNSLNQSKDAKSIMPNYSLTNDEIVT
                     LYNYIKQFSKEEK"
     gene            5498..6772
                     /gene="hemL"
                     /locus_tag="RJ259_001262"
     CDS             5498..6772
                     /gene="hemL"
                     /locus_tag="RJ259_001262"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HDV7366962.1"
                     /translation="MTNKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIF
                     DIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDF
                     PHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAATFN
                     SPSSLGVLEDVAKHTLVAKYNDINSVKELFEKNKDIACIIIEPIAGNMGLVPAKQDFL
                     EELAKICKNNQTLLIFDEVMSGYRASYLGSYGINHIQADIITFGKVIGGGLPAAAFAS
                     RAEIMDILSPLGGVYQAGTLSGNPLAMAAGIASLTKAKKKTKLYDKLGKLAKKLTQGM
                     KKLADEKGLPLQACHVGSMFGYFFTKDPVSNYQDALKSDLALFSKFHKNMLENGIYLA
                     PSQFETGFICSKMDDKIIDTTLEAVRESFKRI"
     gene            6769..7098
                     /locus_tag="RJ259_001263"
     CDS             6769..7098
                     /locus_tag="RJ259_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HDV7366963.1"
                     /translation="MSNILKEEKNHLENSNSKRQKIIRKTLEAADGLSLGISMVVAVF
                     IGVGIGYLLKKFTPYPWLFWLGVFWGISAAILNVYKAYKVQVKSYEEFKERDELIKEK
                     IQKEKNK"
     gene            7098..7601
                     /locus_tag="RJ259_001264"
     CDS             7098..7601
                     /locus_tag="RJ259_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366964.1"
                     /translation="MEHKKALFCIFAIIHLFFWIIFSSLNHFKLDTFLSYEIAFFSVL
                     LIIFTSYLNYKKVIIKKSKNYEKDFNFISSLFIKKKQNLSKIIHFKVLKDDLKPNIKE
                     KIHFFTMFFTLFKLMAYVILVAGFLFLHRQDKLDIFAYICGISSLLICVFIFILYIKK
                     YESKKNY"
     gene            7579..8766
                     /locus_tag="RJ259_001265"
     CDS             7579..8766
                     /locus_tag="RJ259_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7366965.1"
                     /translation="MSPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLA
                     VGVVSSCFFVGALVGTISAHKIISRIGHIRSFGLFGAIFGISAMLHTVSENLIFWAIL
                     RFFIGICYYGLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHS
                     VFILSATLILLSSLPLNLIKIKEPVLPASSPISIPKIFDIAPLAIVTSFIAGMLINGF
                     FSMASLFILLQGFDTKAVSYFIFCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFI
                     TMLIFIFFKLHLYMQYFLGITLGIGIFCLYALALARANDVLVSKNKGVELGRGVLFCY
                     SLGSLFGPLILGFLMQYFEIKGFIWFYIVSLAFLILFAINKPNILNKKFKKKPGNMVI
                     FDD"
     gene            8759..>9397
                     /locus_tag="RJ259_001266"
     CDS             8759..>9397
                     /locus_tag="RJ259_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HDV7366966.1"
                     /translation="MINTQLASQIANTQKNDLKVDNSASKDKTNLKDNPKEALAQALK
                     QNLGLSKDASSEEILAKFVQNETGTKLKELVNKLLDQINAQKNPDSPVLKQGKNLNLA
                     PNFANELKILSTELAKSDTFTQVLDRLNQILKPASEIKNNNLAPLFKNSGVFLEAKLK
                     DALNEELLPKSFHSLLSTIKGLSSEKLSVQIAQLANTNLSPKDTLKELKNIIN"
BASE COUNT         3406 a         1419 c         1455 g         3117 t
ORIGIN      
        1 cagtgtatag ctgaaatttt tggcggtagg gtttctaaaa tgcaaaatcc catgcatggt
       61 aaaatttcta aactttattt taaaaaagat cctattttta agggtattaa aaaagaaatt
      121 gaaatttgct tatatcattc tttacacatt agttccatgc ctgaaaaatg caaaatttta
      181 gctcataatt cagaaaatat tattatggca attaaacata aaaaatatcc tatttatgga
      241 ttgcaatttc accctgaagc ggttttaact caaaaaggca aaaaaatact taaaaacttt
      301 atgaaacttt agtctttttt gcatttaaaa tataaatatg aaaatctaaa ataaaatatc
      361 cttaaaataa ttatcattaa tataaattta taaataaaaa aaccgataac aatataaatt
      421 aatttaaaaa gatttaagat gaaaatagat actttgacaa aaaattttag caattatcaa
      481 acacaaataa acaaaaacaa tgatttggca agtaatgttc atagtgacaa tgtggttaaa
      541 attcaaattt cagatgaagc aagaagttta agtcaagcaa attcaaaaaa tgaaaaagaa
      601 tatgaaatca aagtaagtca agaaaaaata gaaaaccaca aagaccaaaa ttccattcaa
      661 agtagcaaag gtggcggaaa tcccgcatta gaggctttaa tagcaaaatt agctgaaatt
      721 ttagctaaaa ttgcagaact tactcaaaaa atgacaaacg ctaacgaaca aatgaaaacg
      781 acatttcaaa aacaaattga tgtgctaata tctcaagcag atgtaattca agctcaaatt
      841 caagaactcc aaagccaaca agcttgatta tattttttca aaagtttaag aatgctataa
      901 tggtgcattt ttaaactttt tcaaggaaaa atatgactta tctagaaatc gaaggcacaa
      961 atcatctaag cggaaatgtt gcaataagcg gggcaaaaaa tgccgcccta cccttgatcg
     1021 tttcaagcat acttgctaaa aacgaagtaa aaatcaacaa tgttcctaat gttgctgata
     1081 taaaaactct tatatctttg ctagaaaatt taggagctaa agtcaatttt caaaacaata
     1141 gtgctttatt aaacacaaac actcttaatc aaaccatagc taaatatgac attgtgcgta
     1201 aaatgcgtgc ttctatactt actctagggc ctttgcttgc tcgttttggg cattgtgaag
     1261 tatctttgcc tggtggatgt gccataggac aaagacctat tgatttacat cttttagcct
     1321 tagaaaaaat gggggcaaat atacaaatca aacaaggcta tgtcgtagct agtggaaatt
     1381 taaaaggcaa tgaaattctt tttgataaaa tcacggttac aggtagtgaa aacatcatca
     1441 tggcagcagc tctagctaaa ggtaaaacca aactcttaaa tgttgcaaaa gaacccgaag
     1501 tagttcaact ttgcgaagtt ttaaaagacg caggacttga aatcaaaggc ataggtacag
     1561 atgaacttga aatttatggt agtgatggag aacttttaga atttaaagaa tttagcgtta
     1621 tacctgatag aattgaggca ggaacttatc tttgtgcagg ggctattaca aattctaaaa
     1681 ttactttaga taacgttaac gccactcatc ttagtgcagt tttagcaaaa cttcatcaaa
     1741 tgggttttga aactttgatt gcagaagata gtatcgccct acttcctgct aaagaaatta
     1801 aacctgtaga aatcatgaca agtgaatatc caggctttcc aaccgatatg caagcgcagt
     1861 ttatggcact agctttaaaa gctaatggaa ctagtattat tgatgaaaga ctatttgaaa
     1921 atcgtttcat gcatgtaagt gaacttttaa gaatgggtgc ggatattaaa ctcaatggtc
     1981 atattgctac catagtaggc ggaaaagaac ttaacgctgc tgatgtcatg gctacagatt
     2041 tgcgcgcttc ttcagccctt atcttagcag ctcttgcagc taaaggtaca agcaaagtcc
     2101 atagaattta ccatcttgat aggggttatg aaaatttaga agaaaaattt aaagatttgg
     2161 gtgtgaaaat cacaaggctt gaagaatgaa aaatatcttt gaaaccttaa aagacttaga
     2221 aaatcaaatt tcatgtttag atgaaagtga gcttattagc cttgaaaaag caaaggatag
     2281 aattttagct aaagatttat acgctagaaa aaatctacct agttttgaca atgctgctct
     2341 tgatggctat gcttttaatt atactgatat caatgaggct ttggagatta aagggactat
     2401 ttttgcagga gataaaaatt tttatacagt tgctaagaat gaatgctata aaatcatgac
     2461 aggggctaaa atgcccaaaa atgctgatac tatcttaatg ttagaagatg agtatataga
     2521 agaaaataaa ctcatcatta aaaaaacccc taaacaatac aatgcctatc gctataaagg
     2581 cgaagaatta aaaaaaggtg aaattttact tcaaaaaggc accaaactta atgataaaca
     2641 tatcgccctg cttgcttctc aagggcttta taaaatagaa gtcataagaa aaattcgcat
     2701 aggtattttt tcaagtggaa atgagctaaa agaaccttgg caagaatgcg atgaagaaag
     2761 tatttataat gccaatgctt tgcctttact aactatgctt caaaatgctt cttatttggg
     2821 tattatcaaa gatgatttta aaagcactaa agaggcttta gaaaatacaa attttgatct
     2881 tttaatcact tcaggaggtg caagcgttgg cgaggctgat tttatggaaa aagctttaga
     2941 tgaattaggc tttactccgc tttttaaagg tttaaaagca cgccctgcaa gacctactaa
     3001 gctttataga aaaggtgaaa atttcgtatt gattttacca ggaaacccta tggcagctta
     3061 tctttcttgt tttatttttg ctaaaaaaat cattaattta ttaagtggaa acctagacaa
     3121 tcctttaaca ttttatggca aaatgggtat ggatttaaaa cttaaaagcg gaagaaataa
     3181 tctcatttta ggaaatttag aaaaaggtat ttttacacca tttaacgaaa acaaatttgg
     3241 ctctggtatg atacttccac ttattaaaag tgagtttttg cttataagcg aagaaaatac
     3301 gagtgaatta aaaaaaggtg atgaaatcac gcttttaaaa atataatgtt tgtgtttttc
     3361 acaaacatta gcttaattta tcctcatcat catgatcatg gatatattgt tcatcatttt
     3421 ccaaggtatc aacaaaacgc cctatccttt cccagcgaac atttttatct ttatcccaag
     3481 agaaatatac aaaccaaggt ttacctacta tcaacctata aggaacagaa ccccaaaaac
     3541 gactatcata agaataatcg cgattatcac ccatcatgaa atactcattt tcaggtacat
     3601 caaaaacata agcatttccg ccgctaaaac ctatatgatt tccaagttct ttaatataag
     3661 ctggagacat ggcaaaatca cctatgctaa gaaagcgtaa aatatcgctt tctatatctt
     3721 tttttggatc ataatgaata cctttttgtt tataaggttc ttttacataa atttgccctc
     3781 caagagtaac aagatcattc ggataatgtt ctttcataaa ttcatcaccc tcatgcattc
     3841 ttacataaag tgttttattt gcataaacta tcctatctcc tcctgtgcct acacaacgct
     3901 ttacaaagtg ttctttttca tttctaggat ttctaaaaac aactatatct cctctttgcg
     3961 gcccttgtgc ttttatcaaa tgcccatctt tattaaaatc cggcaaaaca ggaatttcca
     4021 accaaggaat atgaggagtt gggataccat agctaaattt tttaacaaat aaaaaatccc
     4081 ctactaataa ggtgtttttc atagaaccag aaggaataac aaaagcttgt ataaagaaaa
     4141 aaatcaccaa aagaacaata actacagttc cagtccaaga ctgtgaaaat ttatataatt
     4201 tctttaaaat ttccatagat tttccctaat taagtctatt tttagcagat ttaactgtgt
     4261 tttctaaaag catggctata gtcataggac ctactccacc tggaacagga gttatataac
     4321 tagatttttt agatacctct tcaaaatcta catctccaac tatctttcca ctttcaagac
     4381 gattgattcc aacatcaaca acaatcactc cttcttttac catatccgat cgaagtaaat
     4441 tcacacaacc tgctgctact ataatcaaat cagcttgcct agtataaagg ctcaaatctt
     4501 tggttttaat atgacaaacg cttactgtag ctccagcgtt taaaagcata gtagccatag
     4561 gacgacctac tatatttgaa gcacctataa taacagcgtc ttttccttct aaatcaattt
     4621 cataagcctt caaaagcttc ataactccaa gtggagtaca aggcaaaaac ccactttcta
     4681 agcctaaatt taaatatcct acattaatag gatgaaagcc atcaacatct ttactactta
     4741 taatgctttc aagtattaaa tctttacaaa tatgatcagg taagggaagt tgaaccaaaa
     4801 ttccatgaac actatcatcg tgatttaagg tattaatcaa tgccaaaagt tcattttgtg
     4861 tagtattttc attaagataa taaactaaag atttaattcc acattcttca caggctttag
     4921 ccttagattt tacataagtt tgacttgcag gatcatctcc aaccaagata acagctaaac
     4981 agctttcaat ccctttgctt ttcaaaaatt gatttttttc ttttaattct tctttgattt
     5041 ttgcgcttaa agctttacca tcaagcaaag tcattatttt ccttctataa atttaatcac
     5101 ttttttaaag taaaaattgt atcatattaa aacttcatta acaaggtgaa actttgaaaa
     5161 ttgtcttaat gtttttttta tttagtatca gtctttttgg tgctgatttt atcactctta
     5221 aagaatactc taaaatgctt tatgaaaatc caaggggcat tagttgtaaa gaatgtcatg
     5281 gagcaaatgg aagcgaacaa attttaggat attatatgaa aaatggtatt aaaacagctt
     5341 ataaagttcc aagtatacaa aatcttagtt ttgaaaattt taaaaattct cttaatcaga
     5401 gtaaagacgc aaaatcaatc atgccaaatt actctttaac aaatgatgaa attgtaactt
     5461 tatataatta catcaagcaa tttagcaagg aagaaaaatg acaaacaaaa aagcttttaa
     5521 agaagcgtgt aaattcatcg caggtggtgt aaattctcca gttcgtgctt ttgcaaatgt
     5581 tcaaagtgag ccaaaattta tttctcatgg aaaaggtgct tatattttcg atatagatgg
     5641 aaattcttat atagactatg ttcaaagctg ggggccttta ctttttggac attgtgataa
     5701 agatatacaa aaagcttgtc aaaaagcact tcataaaggt tcaagttttg gagctccaac
     5761 tttattagaa actgaacttg ccaagcttgt tttatctgat tttcctcatt tagaaaagat
     5821 ccgctttgta agcagtggaa cagaagcaac catgagtgct attcgtcttg cccgtggttt
     5881 tactaaaaaa gataaaattt taaaatttga aggatgttat cacgggcatt ctgattcatt
     5941 attagtgagt gcaggaagtg gtgctgctac ttttaactct cctagttctt tgggtgtttt
     6001 agaagatgta gctaaacaca ctttagtagc taaatataat gatataaata gcgttaaaga
     6061 gctttttgaa aaaaataaag atattgcatg tattatcatt gagcctattg ctggaaatat
     6121 ggggttagtt ccagctaaac aagatttttt agaagaactt gctaagatct gtaaaaacaa
     6181 tcaaactctg ctgatttttg atgaagtaat gagtggatat agagcatctt accttggttc
     6241 ctatggaatc aatcatattc aagcagatat aattactttt ggtaaggtaa taggaggcgg
     6301 tctacctgca gcagcatttg cttctagagc tgaaattatg gatattttaa gtcctttggg
     6361 tggagtttat caagcaggaa ctttaagtgg aaatcctttg gcaatggctg caggtatagc
     6421 aagtcttaca aaagccaaaa agaaaaccaa gctttatgac aaacttggaa aattagcaaa
     6481 aaaacttaca caaggaatga aaaaattagc agatgaaaaa ggacttccgc tgcaagcttg
     6541 tcatgtaggt tctatgtttg gatacttttt caccaaagat cctgtatcaa actaccaaga
     6601 tgcattaaaa tctgatctag cattattttc aaaatttcac aaaaatatgc ttgaaaatgg
     6661 aatttattta gcaccttctc aatttgaaac aggctttata tgttcaaaaa tggatgataa
     6721 aattatagat acaacattag aggctgttag ggaaagcttt aaaagaatat gagcaatatt
     6781 ttaaaagaag aaaaaaatca cttagaaaat tccaacagca aaagacaaaa aatcattcgc
     6841 aaaactcttg aagctgcgga tggtttaagt cttggcattt ctatggttgt tgctgtattt
     6901 ataggtgtgg gaataggata tttgcttaaa aaatttactc cttatccttg gcttttttgg
     6961 cttggagttt tttgggggat cagtgctgct atacttaatg tttataaagc ttataaagtt
     7021 caagtaaaaa gctatgaaga atttaaagaa agagatgagt tgatcaaaga aaaaattcaa
     7081 aaagaaaaga acaaataatg gaacataaaa aagctctatt ttgtattttt gccattattc
     7141 atttattttt ttggatcata ttttcatcgt taaatcattt taaattagat acatttttaa
     7201 gctatgaaat agcttttttt agtgttttat tgattatttt tacttcttat ttaaattata
     7261 aaaaagtcat tataaaaaaa tcaaaaaatt atgaaaaaga ttttaatttc atttcatcac
     7321 tttttattaa aaaaaaacaa aatttatcaa aaattattca ttttaaagtt ctaaaagacg
     7381 atttaaagcc aaatattaaa gagaaaatcc atttttttac tatgtttttt actctcttta
     7441 aattgatggc ttatgtgata ttggttgctg gatttttatt tttacatcgc caagataaat
     7501 tagatatctt tgcttatatt tgtggaattt catccttgct aatttgtgtg tttattttta
     7561 ttttatatat aaaaaagtat gagtccaaaa aaaattatta aatcaatgac agcacttttt
     7621 gctggtatgg catttttatt tgcaggtaat gccttgatag taagctctat aggtgttata
     7681 ttaaaagaaa acggagaaag ttctttagct gttggagtag taagttcttg tttttttgta
     7741 ggcgctcttg ttggaactat cagtgctcat aaaattattt ctcgtatagg tcatatacgc
     7801 tcttttgggc tatttggtgc tatttttgga atttcagcta tgcttcatac agtaagcgaa
     7861 aatcttattt tttgggctat tttaagattt ttcataggaa tttgctacta tggactttta
     7921 atggtcatag aatcatggct taatgaaaaa agcaaaaatg ccattcgatc tagaatttta
     7981 ggcttttatg aaattgtttt ttatcttgcg tttggtattg gagttttaat catagcgtta
     8041 aatttgagca aacatagtgt atttattctc agtgcaactt taattttact ttcatcttta
     8101 cctttaaatc taattaaaat caaagaacct gttttacccg catcaagtcc tatttctata
     8161 cctaaaattt ttgatatagc tcctttagct atcgtcacaa gctttatagc tggaatgctt
     8221 ataaatggct ttttttctat ggcatcttta tttatacttt tgcaaggttt tgatacaaaa
     8281 gcggtttctt attttatatt ttgtggggtt ttaggtggtt ttattgcaca aaccatcata
     8341 ggaactattt cagacaaact tggtcgcaaa tttgccatta tcacttgtgc aagcatagga
     8401 tttatcacta tgcttatatt tatctttttt aaacttcatt tatatatgca atatttttta
     8461 ggaattactc ttggtatagg aatattttgc ttatatgctt tagcacttgc tagagcaaat
     8521 gatgttttag taagcaaaaa taaaggtgta gagttaggtc gtggggttct tttttgttat
     8581 tctttgggct ctttgtttgg ccctttaatt ttaggttttt taatgcaata ttttgaaatc
     8641 aaaggtttta tatggtttta tatagtttct ttagcatttt taattctttt tgctatcaat
     8701 aaaccaaata ttttaaataa aaaatttaag aaaaagcctg gaaatatggt gatatttgat
     8761 gattaatact caactagcaa gtcaaattgc caatacgcaa aaaaatgatt taaaagtaga
     8821 taactctgct tcaaaagata aaacaaattt aaaagacaat ccaaaagaag cacttgcaca
     8881 agctttaaag caaaatttag gtttaagcaa ggacgctagt agtgaggaaa tactagcaaa
     8941 atttgttcaa aatgaaacag gtaccaaatt aaaagaactt gttaataaac ttttagatca
     9001 aatcaatgct caaaaaaatc ccgattcccc tgtgcttaaa caaggaaaaa atttaaattt
     9061 agctcctaat tttgctaatg aattaaaaat cttaagtaca gaacttgcaa aaagtgatac
     9121 ttttacacaa gttttagaca gattaaatca aattttaaaa cctgccagtg aaataaaaaa
     9181 caataactta gctcctttgt ttaaaaattc aggcgtattt ttagaagcta aattaaaaga
     9241 tgccctaaac gaagaattac tacccaaaag ttttcactct cttttaagta caatcaaagg
     9301 tcttagtagc gaaaaactaa gcgttcagat agcccagctt gcaaatacaa atttaagccc
     9361 aaaagacact ttaaaagaat taaaaaatat tattaat
//
LOCUS       DAPIWJ010000065         9179 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.066, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000065 DAPIWJ010000000
VERSION     DAPIWJ010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9179)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9179)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9179
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.066"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(1..126)
                     /locus_tag="RJ259_001267"
                     /pseudo
     CDS             complement(1..126)
                     /locus_tag="RJ259_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344095.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="K+-transporting ATPase subunit F"
     gene            complement(268..1692)
                     /locus_tag="RJ259_001268"
     CDS             complement(268..1692)
                     /locus_tag="RJ259_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDV7366967.1"
                     /translation="MDFLTSLSEGGQFAIQIIIVLICLFYGAKKGGIALGLLGGIGIL
                     MFVFAFHIKPGKPAIDVMLTILAVVVASATLQASGGLDVMLQIAERILRRNPKFLTIL
                     APFVTCFLTILCGTGHVVYTIMPIIYDIAIKNGIRPERPMAAASISSQMGIIASPVSV
                     AVVSLTALLLNANHKLAGFDGYINLLQITIPSTLFGVLCIGIFSWFRGKDLDKDEVFQ
                     EKLKDPEFKKYVYGDSKTLLGVKLPKSNWVAMWIFLGAIALVALLGVFDFLRPNWGQV
                     VKNGIPQVDALGNPKMDVLSMVSVIQMFMLLAGSLIIIFTKTDAKKIGSNEIFKSGMI
                     ALVAVFGISWMADTMFAVHTPMMKAALGDIVKEHPWTYAVMLLLISKFVNSQAAAISA
                     FVPLALGIGVEPGVIVAFAAACYGYYILPTYPSDLATIQFDRSGTTHIGKFVINHSFI
                     LPGLIGVITSCIAGYFIAMAAGYL"
     gene            complement(1814..3064)
                     /locus_tag="RJ259_001269"
     CDS             complement(1814..3064)
                     /locus_tag="RJ259_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HDV7366968.1"
                     /translation="MLKQKITQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEDNP
                     FLNVQDSIQTHDKGKNYFDSFYKHNVNSAFVDSKGLAKKSVYELLNEQILPPLFPTNK
                     SQELAKKIIECLNEEGYFEYDEEFLKEYSLEEIERVRARFKFLDPVGVGAKDYKEAFL
                     FALENMELDEDIDEFCRMLIMDFENIQNHTKEPLYKEALAVLKRFSTPPFLEYFEDSR
                     IIVPDIFVYKENGEIKVKINDDYYPEISIQTDGLEHDFLSHYIKEAKNLVDALAMRKA
                     TLYKIGLMIVEYQYDFFMGKEIKPMTFKDLALDLERNASTISRAVANKYLSCERGLIP
                     LRDFFAFALDEEGETSNVGVKEFVANLVKNEDRNKPLSDSKILELIKEEFKVDIGRRT
                     ITKYRKHLNIASSTDRKKLYELEG"
     gene            complement(3064..3792)
                     /gene="lptB"
                     /locus_tag="RJ259_001270"
     CDS             complement(3064..3792)
                     /gene="lptB"
                     /locus_tag="RJ259_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HDV7366969.1"
                     /translation="MSKLEIVNLEKIIKKTKIIHGISLEVNSGEVVGLLGPNGAGKTT
                     TFYMICGLISPSSGKVLLDGLDVTKDPLNKRARSGIGYLPQESSIFKDLSVEDNLLLA
                     AQIFYKDKKILHDKVEQMLELLSIEPIRLRKGLSLSGGERRRCEIARSLMCEPKFLLL
                     DEPFAGVDPIAVAEIQTLIKELKRLGIGVLITDHNVRETLAICDRAYVIRSGSLLASG
                     NADEIATNKDVKKYYLGAEFKLLD"
     gene            complement(3785..4192)
                     /gene="tsaE"
                     /locus_tag="RJ259_001271"
     CDS             complement(3785..4192)
                     /gene="tsaE"
                     /locus_tag="RJ259_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HDV7366970.1"
                     /translation="MKEFILAKDEIKTMLQIMPKEGVVLLQGDLASGKTSLVQAWVKF
                     LGLDARVDSPTFSTMQKYENHDICIYHYDIYQEGLEGLLANGLFENFFEKGLHLVEWG
                     GENLKKTLMKFGISTIQIKISIKDDKRKYEIYE"
     gene            complement(4189..4434)
                     /locus_tag="RJ259_001272"
     CDS             complement(4189..4434)
                     /locus_tag="RJ259_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HDV7366971.1"
                     /translation="MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVG
                     DIITLHFTEYTQKYKVLAIPSTKSIPKNAQNEYVVKL"
     gene            4589..5809
                     /locus_tag="RJ259_001273"
     CDS             4589..5809
                     /locus_tag="RJ259_001273"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HDV7366972.1"
                     /translation="MKNEVKKVVLAYSGGLDTSIILKWLQDEYNCEVVTFTADIGQGE
                     ELEPARKKALSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLI
                     AKTQAQIALQTGADAVSHGATGKGNDQVRFELGYLAFNPDLKIIAPWREWDLNSREKL
                     LAYAQKHGIDISKKKGKSPYSMDANLLHISYEGLVLEDPAHAPEEDMWRWSKSPKDAP
                     NESEIIELDFQKGDLVAINGEKLSPAGLLTKLNELGCKHGIGRLDIVENRYVGMKSRG
                     CYETPGGTILLKAHRALESITLDREAAHLKDELMPKYASLIYNGYWFSPERMMLQALI
                     DESQIHANGRVKLELYKGNVMVIGRESANDSLFNAAYCTFEEDEVYNQKDAAGFIKLN
                     ALRFIIAGKNGRKF"
     gene            5822..6265
                     /locus_tag="RJ259_001274"
     CDS             5822..6265
                     /locus_tag="RJ259_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HDV7366973.1"
                     /translation="MKVLLIKDVKALGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVL
                     RKYESDKKKEAENLRFEIANLEKLKEELSKITLEISKPVGANGSLFGGVTKDEIAHAL
                     KEQSHIEIDKKSLECDTLKSLGIHEVSVKLGHAIHAKFNINIKAE"
     gene            6265..6807
                     /gene="hslV"
                     /locus_tag="RJ259_001275"
     CDS             6265..6807
                     /gene="hslV"
                     /locus_tag="RJ259_001275"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HDV7366974.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHASLDEEELVKSSLQIA
                     GEICIYTNTNIKTYVIEDEK"
     gene            6804..8123
                     /gene="hslU"
                     /locus_tag="RJ259_001276"
     CDS             6804..8123
                     /gene="hslU"
                     /locus_tag="RJ259_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HDV7366975.1"
                     /translation="MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQ
                     DDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDL
                     ANAALNLVKNEQREKNKDKINEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTK
                     LRNGDLDESTIEIEISQNMFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKN
                     ALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRD
                     LLPIVEGSNVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDK
                     ALYEILTRPKNSLLKQYSQLLKTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLH
                     TVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL"
     gene            8120..8995
                     /gene="era"
                     /locus_tag="RJ259_001277"
     CDS             8120..8995
                     /gene="era"
                     /locus_tag="RJ259_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HDV7366976.1"
                     /translation="MKSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKA
                     IVMHEKNQIIFIDTPGLHESGATLNQLLVQSAIKSIGDCDVILFVASVFDSTKDYENF
                     LSLNPQVPHIIALNKVDLTDNATLLKKLSEYAKFSQHFKAVIPYSSKKKSYKKGLLDE
                     IVKYLDEHEYFYDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLINRTKDTPN
                     LLILEANIITDTNSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNW
                     QKDEEFLKKLLNDEN"
     gene            8982..>9179
                     /locus_tag="RJ259_001278"
     CDS             8982..>9179
                     /locus_tag="RJ259_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366977.1"
                     /translation="MMKINSLNKINFIKSTDLLYAQRTGISKEDELFNNLTADFKLSK
                     PFDYQIAFFKHNEIYHCFLAPV"
BASE COUNT         3403 a         1570 c         1426 g         2780 t
ORIGIN      
        1 ctagtaaaaa tatcatccgc gtgtcctagt ttgaatttca caaaaacgga taaaaaacca
       61 taaactacca aaagctaaaa gcagaagcaa agcaaagata acatccatag gatagccctt
      121 tctcattgat tcaaaatagg atttattcta tccttgttaa gcttatattt tgattaatac
      181 taattttatg atttatttat aatttttatc tatattaaat aaaaagacaa atgaagaatt
      241 tagcaggaaa aatcctgcta aaaattgtta aagataacct gctgccatag cgataaaata
      301 tcctgctata caagaagtga ttacacctat aagacctggt aaaataaaac tatgattgat
      361 aacaaattta ccgatgtgag tagtacctga tctgtcaaat tgtatagtag ctaaatcgct
      421 tggataagtt ggtaaaatat aatatccata acaagcagcc gcaaaagcaa caattacacc
      481 aggttcaaca ccaattccta aagccaaagg aacaaaagcc gaaatagccg ctgcttgaga
      541 gtttacaaat tttgaaatta aaagaagcat tacagcataa gtccaaggat gctcttttac
      601 tatatctcca agcgctgctt tcatcatagg agtatgaact gcaaacatag tatcagccat
      661 ccaagaaatt ccaaataccg caacaagtgc tatcatacct gatttaaaaa tttcattaga
      721 gccgattttc tttgcatctg ttttagtaaa gatgataatc aaagaacctg ctaaaagcat
      781 aaacatctga ataactgaaa ccatggataa aacatccatt ttaggattgc ctaaagcatc
      841 tacttgagga atgccatttt ttacaacttg cccccagttt ggacgcaaga aatcaaatac
      901 acctaataaa gccactaaag caatagctcc taagaaaatc cacattgcaa cccaattact
      961 ttttgggagt ttaacaccta aaagtgtttt agaatcccca taaacatatt ttttaaattc
     1021 aggatcttta agtttttctt gaaatacttc atctttatcc aaatcttttc ctctaaacca
     1081 agaaaaaatt cctatacaca atacaccaaa taatgtacta ggtatggtaa tttgaagaag
     1141 attaatataa ccatcaaaac ctgctaattt atgattagca tttaaaagca aagcagtcaa
     1201 actcacaaca gccacagata caggagatgc aataataccc atttgtgatg atatagaagc
     1261 tgccgccatt ggacgctcag gacgaatacc atttttaatc gctatatcat aaataatagg
     1321 cataatagta taaaccacat gtcctgttcc acaaagtatg gtcaaaaagc aggttacaaa
     1381 aggcgctagt attgttaaaa acttaggatt gcgtcttaaa attctttctg ctatttgaag
     1441 cataacatcc aaaccaccac ttgcttgcaa agttgcactc gcaaccacta ccgctaaaat
     1501 tgtaagcata acatctatgg ctggttttcc aggctttata tgaaaagcaa atacaaacat
     1561 taaaatacct ataccaccaa gtaaaccaag tgctatgccg cctttttttg caccgtaaaa
     1621 aagacaaatt aaaacgataa tgatttggat tgcaaattgc cctccctcgc taaggcttgt
     1681 taaaaagtcc attttaactc ctttgaaaat tgatatataa aaacagttat tattgtatca
     1741 catttttaaa ttaaagaata atatttctaa aaataaaaca aaagtgtaat gggtttgata
     1801 gattgataga attttatcct tcaagttcat ataatttttt tctatctgta gagcttgcta
     1861 tattaagatg tttgcgatat tttgtaatag ttcttcgccc tatatcgact ttaaattctt
     1921 ctttgattaa ttctaaaatt ttactatcac ttaaaggttt atttcgatct tcattcttta
     1981 ccaaatttgc tacaaattct ttaacaccta catttgaagt ctctccctct tcatcaagag
     2041 caaaagcaaa aaaatcacgc aaggggataa gtcctctttc acaacttaaa tatttatttg
     2101 ccacagctct tgatatagtc gaagcattgc gttctaaatc aagtgctaaa tccttaaaag
     2161 tcataggttt tatctctttt cccatgaaaa aatcatattg atattctact atcataagcc
     2221 ctattttata aagagtagct tttctcatcg ctaaagcatc aactaaattt tttgcttctt
     2281 tgatgtaatg acttaaaaaa tcatgctcta aaccatcagt ttggattgaa atttcaggat
     2341 aataatcatc attgattttt actttaattt caccattttc tttataaaca aaaatatcag
     2401 gaacaattat acgagaatct tcaaaatatt ccaaaaaagg aggagtgcta aaacgcttaa
     2461 gtacagctaa tgcttcttta tataaaggct ctttggtatg gttttgtata ttttcaaaat
     2521 ccataatcaa cattctacaa aactcatcaa tatcttcatc taattccata ttttcaagag
     2581 caaataaaaa tgcttcttta taatctttag ctcccactcc tacaggatct aaaaatttaa
     2641 atcttgctct tactcgctca atttcttcca aagaatactc ttttaaaaat tcttcatcgt
     2701 attcaaaata tccttcctca tttaagcatt ctataatttt ttttgcaagt tcttgagatt
     2761 tgtttgtagg aaacaaagga ggaagaatct gttcatttaa aagctcataa acactttttt
     2821 tggcaagtcc tttactatcc acaaaagccg aatttacatt atgtttataa aatgaatcaa
     2881 aataattctt acccttatca tgagtttgta tcgaatcttg aacatttaag aaaggattat
     2941 cctcagcaaa tttatctaaa ttttctttta aatcctctat atttgcttgt aaaatcggca
     3001 accaagagcg taaagtttga gaaattttag tcttgggtgc ttgggtgatt ttttgcttta
     3061 acatcaatca aggagtttaa actccgctcc taaataatac tttttcacat ctttattggt
     3121 tgcaatttca tcagcattcc cactagcaag taaagaacct gatcttataa cataagctct
     3181 atcacaaata gccaaagtct cacgcacatt atgatcggta attaaaaccc caatccccaa
     3241 tcttttaagc tctttaatta aagtttgaat ttcagccact gctataggat caacacctgc
     3301 aaaaggctca tcaagaagca aaaacttagg ttcacacatc aagcttctag cgatctcaca
     3361 acgccttctt tcacctccac ttaaacttaa acctttcctt aaacgaatag gctctatact
     3421 taagagttca agcatttgct caactttatc atgtaaaatt tttttatctt tataaaaaat
     3481 ctgagccgct aaaagcaggt tatcttctac acttaaatcc ttaaaaatac tactttcttg
     3541 aggtaaataa cctatccctg atctagctct tttgtttaaa ggatcttttg tcacatctaa
     3601 accgtctaaa agaacttttc cactacttgg ggaaataagt ccacatatca tataaaaagt
     3661 tgtcgttttt cctgcaccat ttggccctaa aagtcctaca acttctccgc tattaacctc
     3721 taaagaaatt ccatgtataa tcttagtttt tttaataatt ttttctaaat ttacaatttc
     3781 taatttactc ataaatttca tactttcttt tgtcatcttt aatgctaatt ttaatctgga
     3841 tagtagaaat tccaaatttc attaaagttt ttttcaaatt ttcaccgccc cattcaacca
     3901 aatgtaaacc tttttcaaaa aaattttcaa ataaaccatt tgctaaaagt ccttctaaac
     3961 cttcttgata aatatcataa tgataaatgc aaatatcatg attttcatat ttttgcatag
     4021 tggaaaaagt tggagaatcc acccttgcat caagaccaag aaatttaacc caagcttgta
     4081 ctaagcttgt ttttccgcta gccaaatctc cttgaagcaa aacaacacct tctttaggca
     4141 ttatttgaag catcgttttg atctcatctt ttgctaaaat aaattctttc ataattttac
     4201 cacatattca ttttgtgcgt ttttaggaat gcttttcgtg ctaggtatag ctaggacttt
     4261 atatttttgg gtgtattcag taaaatgtaa agtgatgata tcacccacct taacctcttt
     4321 actcgcttta acaataacgc cattaatccc cactacacca cttttacaca tatcctcaga
     4381 aatagctctt cttttcgtga tattaactac atttaaaaat ttatctactc tcataaaagc
     4441 aattttagca aaaaaaatca atttttggaa caaaatttgc ttacgccttt gctttatttt
     4501 ttaagaaaat agcaagtaaa aacttttctt taatgaaatt tggatacaat tttacaattt
     4561 tcaaatctat tttaacaaag gatatcttat gaaaaatgaa gtaaaaaaag tagttttagc
     4621 gtattctggg gggcttgata cgagcattat tttaaaatgg cttcaagatg agtataattg
     4681 tgaagttgta acttttacag cagatattgg tcaaggtgaa gaactcgaac ctgcaagaaa
     4741 aaaagccctt tctttaggca taaaagaaga aaatattttc attaaagatt taagagatga
     4801 atttgttaaa gattatgtat ttcctatgtt tagagccaat gcgatttatg aaggagaata
     4861 tcttttagga acaagtatag caagaccact tatagcaaaa actcaagcac aaatcgccct
     4921 gcaaacaggt gctgatgcgg taagccatgg tgccacaggt aaaggaaatg atcaagtgcg
     4981 ttttgaactt ggctatcttg cttttaaccc agatttaaaa atcatcgctc catggcgtga
     5041 gtgggattta aacagtcgtg aaaaactcct tgcttatgcg caaaaacacg gtattgatat
     5101 ttctaagaaa aaaggaaaat ccccttattc tatggacgca aatttacttc atatttctta
     5161 cgaaggactt gttttagaag atcctgcaca cgcacctgaa gaagatatgt ggagatggag
     5221 taaaagccca aaagacgctc caaatgaaag tgaaattata gaacttgatt tccaaaaagg
     5281 agatttagta gcgataaatg gagaaaaact aagtcctgca ggacttttaa ccaaacttaa
     5341 cgaactaggc tgcaaacacg gtataggacg ccttgatata gtagaaaatc gctatgtagg
     5401 aatgaaaagc cgtggttgtt acgaaactcc aggcggtact atacttttaa aagcacacag
     5461 agcgcttgaa agcatcacgc ttgatagaga agcagcacac ttaaaagatg aactcatgcc
     5521 aaaatacgcg agtttaattt ataatggcta ttggttctcg cctgaaagaa tgatgcttca
     5581 agccttaatc gatgagtctc aaattcacgc caatggcaga gtaaaactcg agctttataa
     5641 aggcaatgtg atggttatag gacgcgaaag tgcgaacgat agcttgttta acgcagctta
     5701 ttgtactttt gaagaagatg aagtgtataa tcaaaaagac gcagcaggct ttatcaagct
     5761 taatgctttg cgttttatca tcgcaggaaa aaatggaaga aaattttaat aaaggaataa
     5821 aatgaaagta ttattaatca aagatgtaaa agcacttgga aaagcaggag aaataaaaga
     5881 agtaaaagac ggctatggac aaaatttctt aatcgctaaa ggctttgcta aagcagctac
     5941 taatgaagtt ttaagaaaat atgaaagcga caagaaaaaa gaggctgaaa atttacgctt
     6001 tgaaatcgca aatttagaaa aactcaaaga agaacttagc aaaatcactc ttgaaatttc
     6061 aaaacccgta ggtgcaaatg gaagtttgtt tggtggcgta accaaagatg aaatcgctca
     6121 cgccctaaaa gaacaaagcc atatagaaat cgataaaaaa agtttagaat gtgatacctt
     6181 aaaaagctta ggaatccacg aagtaagcgt aaaacttgga cacgcaatcc atgctaaatt
     6241 taatataaat ataaaggcgg aataatgttt cacgcaacaa cgattttagc ttacaaaggc
     6301 aaaaacaaat ccgtaatcgg cggagatgga caagtaagct ttggaaacac ggtattaaaa
     6361 ggcaatgccg taaaaataag aaaacttaat aatggtaaag ttttagccgg ttttgcaggc
     6421 tcaacagctg atgcttttaa tctttttgat atgtttgaaa atctccttca aagttctaaa
     6481 ggcgatcttt taaaagctgc cattgatttt tctaaagaat ggagaaaaga caaataccta
     6541 agaaaacttg aagccatgat gcttgtactt gatagaaatc acattttttt actttcaggc
     6601 acaggcgatg tggttgaacc cgaagatgga caaatcgcag ccataggaag tggtggaaac
     6661 tatgcacttt cagcggctag agccttagca aaacatgcaa gtttagatga agaagagctt
     6721 gtaaaatcaa gccttcaaat cgcgggtgaa atttgcattt ataccaatac taatatcaaa
     6781 acttatgtga tcgaggatga gaaatgaatc taactccaaa agaaattgtt aaatttttag
     6841 atgattatgt cataggacaa aaaaaagcta aaaaaatcat agctatagct ttaagaaatc
     6901 gctaccgcag aatgcaactt agccctgagt tgcaagatga tatagtgcca aaaaatatct
     6961 taatgatagg ttctacaggt gtaggaaaaa cagaaatcgc taggcgttta gctaaaatga
     7021 tgggctttcc tttcattaaa atcgaagcga gtaaatatac tgaagtaggt tttgtaggtc
     7081 gtgatgtaga aagcatggta agagatcttg ccaatgcggc tttaaatttg gtaaaaaatg
     7141 agcaaagaga aaaaaacaaa gataaaatca atgaatttat agaaaataaa attttagaaa
     7201 aacttttgcc acctctacca aagggtatca gcgatgaaaa acaagaagaa tataaaaaca
     7261 gtcttgaaaa aatgagaact aagctaagaa atggcgatct tgatgaaagc accatagaga
     7321 tagaaatttc acaaaatatg ttcgatacca atcctaacct acctcctgaa atgggtgcaa
     7381 tgcaagatat agttaaggtt ataggcgttg gcagtaaaaa agtcaaaaaa gaaatgaaaa
     7441 tcaaagacgc taaaaatgct ttaaaaaatg aagcaggaga aaaaatccta gatcaagaaa
     7501 gtatcaaaag tgaagcttta aaaagagcgg aaaatgaagg gattattttt attgatgaaa
     7561 tcgataaaat cgctgtttca agcggaaatt caaaccgcca agatccaagt aaagaagggg
     7621 tgcaaagaga cttacttcct atagtcgagg gatcaaatgt acaaacaaaa ataggtactt
     7681 taaaaaccga tcatattctt tttatcgctg caggagcttt tcatcttagc aaaccaagtg
     7741 atcttatccc tgaacttcag ggacgctttc ctttaagagt ggaattagat agtcttgatg
     7801 ataaagctct ttatgaaatt ttaacacgcc ctaaaaattc acttttaaaa caatactctc
     7861 agcttttaaa aactgaaaat ttagaacttg aatttgatga tgaagccatt aaagaaatag
     7921 caaaaatagc ttcaagagcc aatgaagaaa tgcaagatat aggtgctaga cgcttacata
     7981 ctgtgataga aaaattactt gaagatctaa gctttgaagc tgatgagtat gcgggtaaaa
     8041 aattcgtagt ggataaaaaa atggtagaag aaaaactcgg agatatcata gaaaataaag
     8101 atcttgcaag gtatattttg tgaaaagtgg ctttgttagc atcatagggc gtactaatgc
     8161 aggaaaaagt actttaatca attccttatt agaagaaaaa atcgccctag tttctcacaa
     8221 acaaaacgcc acaaggcgta aaatcaaagc catagtgatg catgaaaaaa atcaaatcat
     8281 tttcatcgat accccaggac ttcacgaaag cggtgctaca cttaatcaac tgcttgtcca
     8341 aagcgctatt aaatctatag gggattgtga tgtgatttta tttgtggcga gtgtttttga
     8401 tagtacaaaa gactatgaaa attttcttag tctaaaccca caagtaccac atatcatcgc
     8461 tttaaataaa gtagatttaa ccgacaatgc tacgctttta aaaaaactta gcgaatatgc
     8521 aaaatttagc caacatttta aggctgtcat tccttattct tctaagaaaa aaagctataa
     8581 aaaaggcttg ttagatgaga tagtaaaata tcttgacgaa catgaatatt tttatgatcc
     8641 tgaattttta agtgcgagta gcgaaaaaga actttataga gatttcatac ttgaaagtat
     8701 ttatgaaaat ttaagcgatg agcttcctta tagtagcgaa gtgcttatca atcgcaccaa
     8761 agacacgccc aatcttttaa tcctagaagc caatatcatc acagatacaa actctcacaa
     8821 gggtatgctt ataggaaaag aaggggcaac tttaaaaaga ataggcaaag atgcacgctt
     8881 taaaatttca aaacttgcac aaaaaaaagt acttttaaag cttttcgtaa cagtgaaaaa
     8941 aaactggcaa aaagatgaag aatttttaaa aaaactttta aatgatgaaa attaattcat
     9001 taaataaaat aaattttata aaatctacag atttgcttta tgctcaaaga acaggaatat
     9061 ccaaagaaga cgaacttttt aacaatttaa ccgcagattt taagctaagc aaaccctttg
     9121 actatcaaat agcttttttt aaacataatg aaatttatca ttgtttttta gcacctgtt
//
LOCUS       DAPIWJ010000066         8712 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.067, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000066 DAPIWJ010000000
VERSION     DAPIWJ010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8712)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8712)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8712
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.067"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            177..602
                     /gene="rplM"
                     /locus_tag="RJ259_001279"
     CDS             177..602
                     /gene="rplM"
                     /locus_tag="RJ259_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HDV7366978.1"
                     /translation="MTKITKPNEVKREWIVLDAEGKRFGRLLTEVATILRGKNKPCFT
                     PNVDCGDYVIIINASKAVFTGANKAEDKLYHRHSGYFGSVKSEKFGDLLEKNPAKLYK
                     LAVRGMLPKTNLGRAMLKKLKIYAGSEHPHTAQIAKEGK"
     gene            605..994
                     /gene="rpsI"
                     /locus_tag="RJ259_001280"
     CDS             605..994
                     /gene="rpsI"
                     /locus_tag="RJ259_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HDV7366979.1"
                     /translation="MATTYATGKRKTAIAKVWVKPGSGKISVNGVDLNTWLGGHEAIK
                     LKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGL
                     LTRDSRTVERKKYGRRKARRSPQFSKR"
     gene            1119..2078
                     /gene="cadF"
                     /locus_tag="RJ259_001281"
     CDS             1119..2078
                     /gene="cadF"
                     /locus_tag="RJ259_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding outer membrane protein CadF"
                     /protein_id="HDV7366980.1"
                     /translation="MKKIFLCLGLASVLFGADNNVKFEITPTLNYNYFEGNLDMDNRY
                     APGIRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKTTDITRTYLSAIKGIDVGEKFYF
                     YGLAGGGYEDFSNAAYDNKSGGFGHYGAGVKFRLSDSLALRLETRDQINFNHANHNWV
                     STLGISFGFGGKKEKAVEEVADTRATPQAKCPVEPREGALLDENGCEKTISLEGHFGF
                     DKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDNIGSRAYNQKLSERRAKSVANEL
                     EKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR"
     gene            2078..2719
                     /locus_tag="RJ259_001282"
     CDS             2078..2719
                     /locus_tag="RJ259_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDV7366981.1"
                     /translation="MNKTILFDLDGTLIDSTDAILNSFQGAFKALGLTSKNNEEIKNL
                     IGYPLEQMFRMLYPDKVNLSKEFVLAYREIYAQIYLEQTTLLPKAKEALELGSEIADL
                     GIVTTKGGKFTPILLDYLGVKKFFKTLITLEDVTNPKPSSEPIILALKGLNKTQENAY
                     MIGDTILDIQAAISANITPLALTCGYGNENELKAHSMVFLNAYEAVNYIARLN"
     gene            2812..6372
                     /gene="nifJ"
                     /locus_tag="RJ259_001283"
     CDS             2812..6372
                     /gene="nifJ"
                     /locus_tag="RJ259_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HDV7366982.1"
                     /translation="MGKIMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDMWA
                     AAGKKNLFGVPVKIVEMQSEAGAAGSVHGSLQAGALTTTYTASQGLLLKIPNMYKIAG
                     QLLPCVIHVAARSLAAQALSIFGDHQDIYAARQIGFAMLCSHSVQETMDLAGVAHLAA
                     IKGRVPFLHFFDGFRTSHEIQKVEVMDYAHFDRLLDREALLEFRNNALNPENPKTRGT
                     AQNDDIYFQTREVSNRFYDALPDVVNEYMQEISKITGREYKPFTYYGHKEPECVIVAM
                     GSVTQALEEVVDYLNAKGEKVGILKVYLYRPFSLKYFFDVMPKSVKKIAVLDRTKEPG
                     SLGEPLYLDVKSAFYGRENAPVIVGGRYGLSSKDVDPAQMIAVFENLKLDNPKDGFTV
                     GIIDDVTHTSLSTGEKISLGDESTIECLFYGLGADGTVGANKNSIKIIGDKTDFYAQA
                     YFAYDSKKSGGYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYLEIYDVLAGIRKGGT
                     FLLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFF
                     KLAKIIPYEDAQKYMKELAYKSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPNWKNLE
                     LKEKEQTNAYKGTEFVEKIVKPMNAAKGDDLPVSAFLGYEDGSFEHGTTEYEKRGVGV
                     MVPRWIEANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKDHALEAKGTKGEKLS
                     FKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKEITYKDDIL
                     NKETTKGAQFAQPLFEFHGACPGCGETPYITLITRLFGERMIVANATGCSSIYGGSAP
                     STPYRKSVKNGHGPAWGNSLFEDNAEFGLGMKIATENTRHRIEHIMNESMQEVPNALS
                     ALFKDWIANKDNGAMSVEIKDKMIPILEQNKNIKAVQDILELKQYLSKKSHWIFGGDG
                     WAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQK
                     KDLGQIAMTYGYIFVAQVNSTANYTHLIKAITAAEAYDGPSLVICYSPCIAHGIKGGL
                     GYSGEQGELATKCGYWPLYTFDPRLEEQGKNPLTLTGKEPDWDLYEQFLMNEVRYNSL
                     KKANPEHAAELFERNKKDAQRRYRQLKRIAMADYSNEVES"
     gene            6396..6713
                     /locus_tag="RJ259_001284"
     CDS             6396..6713
                     /locus_tag="RJ259_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HDV7366983.1"
                     /translation="MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRH
                     IKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKEIKFQYDNLEIAIQINKNDKINI
                     NIN"
     gene            6685..8103
                     /gene="mshL"
                     /locus_tag="RJ259_001285"
     CDS             6685..8103
                     /gene="mshL"
                     /locus_tag="RJ259_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HDV7366984.1"
                     /translation="MIRLILILINILFCHYLYALDCQKRLFDISINEKLSIQESLDEL
                     AKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFNFFIKEHDLSYDFDGKILRIS
                     GINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQN
                     IEKEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVI
                     IDVSILAVSLNESHSSGINWQNFNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNF
                     DSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGTTVSESY
                     NNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKL
                     SSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFII
                     TPSIVDSVNAPSLKDLGFKHYE"
     gene            8096..8704
                     /locus_tag="RJ259_001286"
     CDS             8096..8704
                     /locus_tag="RJ259_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7366985.1"
                     /translation="MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLA
                     KKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILDEVGMYDYAMLESIRIYSDSISF
                     VLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
                     QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR"
BASE COUNT         3134 a         1145 c         1612 g         2821 t
ORIGIN      
        1 aagatcgcca ttagtgaaat tttgcaaaaa gataaagtgc gtgcttttat agtttattgt
       61 ttggaaaatg aaattcaaat tttggaaata taaacttaat ttttacttaa attaagtaaa
      121 aattaatatt attttttata caatcacatt ttaaattttt ggcaaaggta aaaattatga
      181 caaagataac aaagccaaac gaagtaaaac gagaatggat tgttttagac gcagaaggca
      241 aacgctttgg tcgtctttta actgaagtag caacaatttt gagaggtaaa aacaaacctt
      301 gctttactcc aaatgttgat tgtggtgatt atgtaattat catcaatgct tcaaaagctg
      361 tatttacagg tgctaataaa gcagaagata agctttatca tagacattca ggatattttg
      421 gaagtgtaaa aagcgaaaaa tttggtgatt tacttgaaaa aaatcctgca aaattatata
      481 aattagcagt tagaggtatg cttcctaaaa caaatttggg cagagctatg cttaaaaaat
      541 taaaaatcta tgcgggtagt gagcacccac acactgcaca aattgctaaa gaaggaaaat
      601 aatcatggca acaacatacg caacaggtaa gagaaaaact gctatcgcaa aggtatgggt
      661 aaaaccaggt agtggtaaaa ttagtgttaa tggtgttgat ttaaacactt ggcttggtgg
      721 acacgaggcg attaagctta aagtggttca acctttactt gtgactaaac aagaaacttc
      781 aatggatatt aaagcaacta ctttaggcgg gggctatagt gctcaagctg aagctttaag
      841 acatggaatt tcaagagctt tagcagctat ggatgctgat tttagagcct tattaaaacc
      901 taaaggactt cttactagag atagtagaac tgttgagcgt aaaaaatatg gacgccgcaa
      961 agcaagaaga agcccacaat tctctaaacg ttaatatttt tggtgggatt ttcccacctt
     1021 tctacaattt tttataaaac tcatcctttt ttctatcatt tatgttataa ttgcaaaatt
     1081 taaattttta ttttataaca caatgaaagg ttttttctat gaaaaaaata ttcttatgtt
     1141 taggtttggc aagtgtttta tttggtgctg ataacaatgt aaaatttgaa atcactccaa
     1201 ctttaaacta taattacttt gaaggtaatt tagatatgga taatcgttat gcaccaggga
     1261 ttagacttgg ttatcatttt gacgattttt ggcttgatca attagaattt gggttagagc
     1321 attattctga tgttaaatat acaaatacaa ataaaactac agatattaca agaacttatt
     1381 tgagtgctat taaaggtatt gatgtaggtg agaaatttta tttctatggt ttagcaggtg
     1441 gaggatatga ggatttttca aatgctgctt atgataataa aagcggtgga tttggacatt
     1501 atggcgcggg tgtaaaattc cgtcttagtg attctttggc tttaagactt gaaactagag
     1561 atcaaattaa tttcaatcat gcaaaccata attgggtttc aactttaggt attagttttg
     1621 gttttggtgg caaaaaggaa aaagctgtag aagaagttgc tgatactcgt gcaactccac
     1681 aagcaaaatg tcctgttgaa ccaagagaag gtgctttgtt agatgaaaat ggttgcgaaa
     1741 aaactatttc tttggaaggt cattttggtt ttgataaaac tactataaat ccaacttttc
     1801 aagaaaaaat caaagaaatt gcaaaagttt tagatgaaaa tgaaagatat gatactattc
     1861 ttgaaggaca tacagataat atcggttcaa gagcttataa tcaaaagctt tctgaaagac
     1921 gtgctaaaag tgttgctaat gaacttgaaa aatatggtgt agaaaaaagt cgcatcaaaa
     1981 cagtaggtta tggtcaagat aatcctcgct caagcaatga cactaaagaa ggtagagcgg
     2041 ataatagaag agtggatgct aaatttattt taagataatg aataaaacta ttttatttga
     2101 tttagatggc actttaattg attctactga tgctatttta aattctttcc aaggagcttt
     2161 taaagccctt ggattaactt ctaaaaataa tgaagaaatc aaaaatctca taggttatcc
     2221 tttagagcaa atgtttagaa tgctttatcc agataaagta aatttaagta aagaatttgt
     2281 attagcttat cgtgaaattt atgcacaaat ttatttagaa caaaccactc ttttgcctaa
     2341 agcaaaagaa gcattagaac ttggaagcga aattgcagat cttggtatag ttacaacaaa
     2401 aggaggtaaa tttactccga ttctgcttga ttatttggga gttaaaaaat tctttaaaac
     2461 tttaattact cttgaagatg tcacaaatcc aaagccaagt tccgaaccta taattttagc
     2521 cttaaaagga ctcaataaaa ctcaagaaaa tgcctatatg ataggcgata caatattaga
     2581 tattcaagct gcaatttctg ctaatatcac tcctttggcc ttaacttgtg gctatggcaa
     2641 tgaaaatgaa ttaaaagctc attctatggt atttttaaat gcatatgagg ctgttaatta
     2701 tatagctaga ttaaactaat ttcaagtttt cgttaaacgc cttttaagag aatttatagt
     2761 aaattgatag ttaaaaaatt ataaaaatta tcaatataaa ggaaggtctc aatgggtaaa
     2821 attatgaaaa ctatggacgg aaatgaggct gctgcatacg ctgcgtatgc ttttactgaa
     2881 gttgctggaa tttatcctat tacacctagt tctcctatgg ctgattatac cgatatgtgg
     2941 gcagctgcag gaaaaaaaaa tctttttgga gttcctgtaa aaatcgtaga aatgcaaagt
     3001 gaagcaggag ctgcaggtag tgtgcatgga tctttacaag ctggggcttt gactacaact
     3061 tatacggctt ctcaaggatt actccttaaa attccaaata tgtataaaat agcaggtcaa
     3121 ttactcccct gtgtaatcca tgtagcagcg cgttctttgg ctgctcaagc tttgtctatc
     3181 tttggtgatc atcaagatat ttatgcagca agacaaattg gttttgctat gctttgttcg
     3241 cattctgtgc aagaaaccat ggacttagct ggtgtagcac atttagctgc aattaaggga
     3301 agagtgccat ttttacattt ttttgatggt tttagaacaa gccatgaaat tcaaaaagtt
     3361 gaagtaatgg attatgcgca ttttgataga ttattagata gagaagcttt gcttgaattt
     3421 agaaataatg ctttaaatcc agaaaatcca aaaacacgtg gaacagcaca aaatgatgat
     3481 atttattttc aaactagaga agtaagcaat cgtttttacg atgctttacc tgatgttgtt
     3541 aatgaatata tgcaagaaat ttcaaaaatt acaggtagag aatacaaacc atttacttat
     3601 tatggtcaca aagagccaga gtgtgtgatt gttgctatgg gttctgtaac tcaagcactt
     3661 gaagaagtgg tggactatct taatgccaag ggtgaaaagg tagggatttt aaaagtttat
     3721 ctttatcgcc catttagttt aaaatatttc tttgatgtta tgccaaaatc agtgaaaaaa
     3781 atcgcggttt tagatagaac caaagaacca ggaagtctcg gagaaccact ttatcttgat
     3841 gtaaaatcag ctttctatgg aagagaaaat gctcctgtta tagtgggtgg aagatacgga
     3901 ctttcttcaa aggatgttga tcctgctcaa atgatagcag tatttgaaaa tcttaaactt
     3961 gataatccaa aagatggctt tactgtaggt ataattgatg atgtaactca tacttcactg
     4021 agtactggag agaaaatttc acttggagat gaaagtacga tcgaatgttt attttacgga
     4081 cttggtgctg atggaactgt gggtgcaaat aaaaactcga ttaaaatcat cggagataaa
     4141 acggattttt acgctcaagc ttattttgct tatgattcta aaaaatcagg gggttataca
     4201 agaagccatt taagattttc taaaaaacct atccgttcaa cttatcttgt ttcaactccg
     4261 cattttatcg cttgttcggt agcggcttat ttggaaattt atgatgtttt agcaggaatt
     4321 cgcaaaggag gaactttcct tttaaatagt atttggaatg ctgaagaaac cataagacaa
     4381 cttccagatg cagtaaagaa aactttagct gaaaaagaag taaattttta tatcatcaat
     4441 gcaaccaaac tagctcgtga tataggtttg ggaaatcgta caaataccat tatgcaatca
     4501 gcctttttca aacttgcaaa aatcattcct tatgaagacg cacaaaaata catgaaagag
     4561 cttgcgtata aatcttatag taaaaaaggc gatgctattg tagaaatgaa ttacaaggct
     4621 attgatgtgg gtgctgatgg acttgtaaaa gttgaagtgg atccaaattg gaaaaattta
     4681 gagcttaaag aaaaagaaca aaccaatgcc tataaaggta ctgaatttgt tgaaaaaatc
     4741 gtaaaaccta tgaatgcggc taagggtgat gatttacctg tttcagcctt tttaggttat
     4801 gaagatggaa gttttgaaca cggcacaacc gaatacgaaa aacgcggtgt tggggttatg
     4861 gtaccaagat ggatagaggc aaattgtatt caatgcaatc aatgtgcttc agtttgtccg
     4921 catgctgtta tcaggccatt tttgattaat gatgaagaaa tggcaaatgc acctcgcggt
     4981 gtaaaagatc atgctttaga agctaaagga accaaaggag aaaaattaag ctttaaaatt
     5041 caagtttctc cacttgattg tacaggctgt gagctttgtg ttcatgagtg tcctactaaa
     5101 gaaaaatctt tggttatggt accacttcaa gaagagatgg attttggtga gcaagaaaat
     5161 gcggattatt tatttaaaga aattacttat aaagatgata ttttaaataa agaaaccaca
     5221 aaaggagcgc aatttgccca acctttattt gaattccatg gggcatgtcc tggatgtggg
     5281 gaaactcctt atattacttt aattacaaga ttgttcggtg aaagaatgat tgtggctaat
     5341 gctacaggtt gtagttctat ttatgggggt tcagctccat caactcctta tagaaaaagt
     5401 gtgaaaaatg gacacggtcc tgcttgggga aattcacttt ttgaagacaa tgctgagttt
     5461 ggtttgggta tgaaaattgc aactgaaaat acaagacacc gcattgaaca tatcatgaat
     5521 gaaagtatgc aagaagttcc aaatgcttta tcagctcttt ttaaagattg gattgcaaat
     5581 aaagacaatg gtgctatgtc tgtggaaatt aaagataaaa tgatccctat tttagagcaa
     5641 aataaaaata ttaaagctgt acaagatata ttagagctta aacagtattt aagtaaaaaa
     5701 tctcactgga tttttggtgg tgatggttgg gcttatgata taggctatgg cggacttgat
     5761 catgttttag caagtggaga aaatgtaaat attttagtgc ttgatacaga agtttattct
     5821 aatacaggcg gtcaaagttc aaaatcttct agaacaggag ctgtagcaca gtttgcagca
     5881 gcaggcaaac ctatacagaa aaaagatcta ggtcaaattg ctatgactta tggttatatt
     5941 tttgtagcac aagtaaattc aacggcaaat tatactcatc ttatcaaagc tatcactgca
     6001 gctgaggcct atgatggacc atctttggtg atttgttatt ctccttgtat agctcatggt
     6061 attaaaggtg ggctgggtta ctcaggagag caaggtgagc ttgctacaaa atgtggttat
     6121 tggccacttt atacctttga tcctcgttta gaagagcaag gaaaaaatcc tttaactcta
     6181 acaggaaaag aacctgattg ggatttatat gagcaatttt tgatgaatga agtgcgttat
     6241 aattcactta aaaaagcaaa tcctgaacac gctgctgagc tttttgaacg caataaaaaa
     6301 gacgctcaac gtcgctatag acagcttaag cgtattgcta tggctgatta tagcaatgag
     6361 gtcgaaagct gataaaatat atttttagtg ctacattgtg ttttagcact ttgtttgcac
     6421 aagataattt tgaagagtat tttaaactta tagataaaga aaatcgtata aattttaata
     6481 ctcttcaaaa cccatttgtg aatcctactt ttgaaaaatt aagacatatt aaaattactg
     6541 caattatgct tgataaagta aaaatttatg atcgatggta taaaaaaggt gatatgattg
     6601 atgatgctat aatatatgaa ataaatacta aagagattaa attccaatat gataatttag
     6661 aaattgcaat ccaaataaat aaaaatgata agattaatat taatattaat taacattctt
     6721 ttttgccatt atctttatgc tttagattgt caaaagcgtc tttttgatat cagtattaac
     6781 gaaaaattaa gcatacaaga aagtcttgat gagcttgcaa aatattgttc tttcagtatt
     6841 attgttaaag ataaaattgc caaagaaaaa ttagaaacat tgcaaaactc tgtcaatatt
     6901 catcaaatga gtttggacga aatttttaat ttttttatca aagagcatga tcttagctat
     6961 gattttgatg gtaaaatttt aagaatttca ggcattaata cgaagatttt taagataagt
     7021 tatatcactt ctatcagaga aggacaaagc ataactaaag cgtctgtaga cgctaaacca
     7081 aggcaaagtg aatatagcgg tagttttgat gatgcagaag acaacatgat taaaagtatg
     7141 gaaaaatttg atttttggca aaatatagaa aaagagatta ttgtattatt aaaaaattct
     7201 catgaagatt atgaggctaa aactcccatt ataaatccca atgcaggtct tattatagta
     7261 actggaacaa attctcagtt aaaaagtgtg aaaaattatt tgcaaaaact agaaaatcgt
     7321 cttaaaaaac aagttattat cgatgttagc atacttgctg tgagtttaaa tgaaagccat
     7381 tctagtggga ttaattggca aaattttaat ataggtttaa attcacaagt aaataatgaa
     7441 aattctttta ttcagtttca aaatgggcaa ggttttgtta agaatttggg tttaagggcg
     7501 aatttaaatt ttgattctat tattaacttt ctttctcaaa atggaaaaac tagcgtgctt
     7561 tctaatccaa agcttatggc tttaaataac caacaagcca ttatttctgt aggcgatact
     7621 ataaattatc aagttaaaga aagttctaaa ggtactgaaa atgggactac tgttagtgaa
     7681 agttataata attattctat ttttgtaggc attttactca atatcttgcc tgaaatttct
     7741 gatgatggaa aaataatgct taggattaat ccaagcttaa gtgattttaa gtatccagaa
     7801 gataataaac gacaaaaaga accaagaact attgctcctg ataccataca aaaaaagctt
     7861 tctagtgttg tgcaagtaga gaataatcaa actttaattt taggcggatt gatttctcac
     7921 gataaatcta atgagaaaaa ttctatcaat tttctatcaa aaattccaat cctaggttct
     7981 ttgtttaaag gagaagtttt aaattctaaa gcaaccgaaa tcgtttttat tatcactcca
     8041 agtatagtag atagcgtaaa tgctccaagt cttaaagatc taggatttaa gcattatgag
     8101 taaaattatt ccatttagag aagaaatttt tcatcaaatc aatcaaattt tagaaagcca
     8161 aaaagctttt atttttttat ggggaaaaag tggtagtggt aaaagtgtat tgttgcaaag
     8221 attggcaaaa aaatataatg ttgattttat taatgaaaat tttaaagatc agagtttctt
     8281 aaaagaaaaa attgagtttt tgatttcaca aggtcagagt ttaatcattc ttgatgaagt
     8341 gggaatgtat gattatgcaa tgctagaaag catcaggatt tatagtgatt ctataagttt
     8401 tgttttaagt tctcataaaa agttaaatat acttaaaaaa gagcatttta aaagtcgttt
     8461 aagtgcttgt tttaaattga aaaatattag tcttttagaa cttgatgatt atattaaatt
     8521 gaaatttgga atgaattttt caaataaatg tcttaagttt ttacaaaaaa tttctcaagg
     8581 aaatttaaga tatattgata aaactttaaa aagtttttat gagataaata gtttttttga
     8641 taaaaacaaa agtcaagagt atattttaaa gcttagtgct ttagagaatg gcttattaag
     8701 gtaagatatg ca
//
LOCUS       DAPIWJ010000067         8627 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.068, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000067 DAPIWJ010000000
VERSION     DAPIWJ010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8627)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8627)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8627
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.068"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(103..555)
                     /locus_tag="RJ259_001287"
     CDS             complement(103..555)
                     /locus_tag="RJ259_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HDV7366986.1"
                     /translation="MFKVYYKMPLCYLSLHSDGKFLTRVDFCDNKRSEKNCSLLDLAK
                     YELDLYFTHKLRKFSIPVLIQGTDFESKVYKALMEIPYGKIATYKDIAEKINHPKAFR
                     AVGNANSKNQIPIFIPCHRVIASNGIGGYNGGLEIKRFLLENEGVNLK"
     gene            610..3156
                     /locus_tag="RJ259_001288"
     CDS             610..3156
                     /locus_tag="RJ259_001288"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HDV7366987.1"
                     /translation="MSFMQEYNKLVEERAALGIPPLPLNANQTRELCKLLENENNEEL
                     ANLLENRVNPGVDDAALVKCEFLDSILKGKISAPNIDKKRALRMLGTMLGGYNVKVLI
                     DALKDENIAKDAAEVLKNIIFVHDNFHTIAELSKNNPHAKEVLQSWANADWFNKKEKL
                     PQVIKCIVFKVAGETNTDDLSPAGDAFTRSDIPLHANAMLKVRQTGSLEKIKELKKSG
                     REVVYVGDVVGTGSSRKSAINSIQWHLGKEIEGVPNKHSGGIIMGSTIAPIFFNTAQD
                     SGALPIICDVTNLEMGDEFEIHPYEGKIIKNGSTIAEFTLSPNTLLDEVRAGGRIPLI
                     IGRGLCTKAREFLGMESENIFTKPEQPKSSSGGYTLAQKMLGRACGVEGVRPGMYIEP
                     ITLTVGSQDTTGPMTRDEIKELASLGFNADFVMQSFCHTAAYPKVSDSNLHKTLPNFM
                     TSRGGVSLKPGDGVIHSWLNRFVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTG
                     SMPLNVPESVLVRFSGELQAGVTLRDLVNAIPYYAIKQGQLTVEKKNKKNIFAGKILE
                     IEGLPNLKVEQAFELSDASAERSAAACSVDLSIESVSEYIKSNISLIEAMIEVGYENK
                     ATLARRAEKMREWLKNPTLLRADKDAKYAYIIDINLNNIKEPILACPNDPDDVATLSE
                     ILADDKRPKNIDEVFVGSCMTNIGHYRALGEILKDKGILKTRLWVVPPTKMDKAQLIN
                     EGYYSIFGAAGARIEVPGCSLCMGNQARVNDGAVVFSTSTRNFDNRMGMGAKVYLGSA
                     ELAAVCAILGKIPSKEEYLQIVSEKLSNEHKANIYRYLNFNEIENFKLEN"
     gene            3206..4444
                     /locus_tag="RJ259_001289"
     CDS             3206..4444
                     /locus_tag="RJ259_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HDV7366988.1"
                     /translation="MKLLFTSFCCFASLMASDAINCDNIKNNKTLLNESSNLDYLNIA
                     SSCKESLKNQDFTKKLYAISNEIRGSNSSCNGVAYLPKLQQFDFLLLKIAIDPIAYQK
                     TLDTPENLEKKYDILKSYFRYWAYQSIGNFRLYKAFWQEYNNAIEPLEKYFESNFNFD
                     KGSNIYYTSNALNEFLNWAVGETKIYKDISPLAKIMSNKNYSVSYIQDFIFSNNPSQD
                     DLTIALQAALLNQREKEILELLIRFGARIDEGYESAIFYALESYENTNFLIQNGANVN
                     QANAFGKTPLFYAIEFNRLDIIKLLLDNGANVNQKYINNNEKLALSANIGSNTPYFIT
                     FCALEHTSKNVLMHAAAYGNVEILKLLISKGANFNAVDDLGFNALDFALSAGKKENAD
                     YLKSLGLKANENLFYGGSLE"
     gene            4441..5190
                     /locus_tag="RJ259_001290"
     CDS             4441..5190
                     /locus_tag="RJ259_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HDV7366989.1"
                     /translation="MKTAFITGASSGFGRACVEAFIQEGYKAIALARRKERLEELKNA
                     YKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINT
                     MVDTNIKGFLYVAKAIIPILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
                     ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMS
                     IINLPSHINVNEIELMPVTQTWNGFYIERDE"
     gene            5187..6920
                     /locus_tag="RJ259_001291"
     CDS             5187..6920
                     /locus_tag="RJ259_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HDV7366990.1"
                     /translation="MNKFLVSLFLPLVAFANSSEAAANANLFGAFTLIPPLVAIALAF
                     ITKDVILSLFTGVLSGTFLLSLSTNIFKAQHLTFVNYYNTTVESFSKIISYILGSTSD
                     PVNAGIILQILCIGGLVALITKMGGAKAVALKFAKRAKSAVSAQVNTWFLGLLIFFDD
                     YANLLIVGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIGLEVSLIKTAYE
                     HIGISNISAFGIFVETIPYRFYNIFMLFFVVMTAIMGREFGSMYKAEVRARTTGQIAP
                     LPKSGTLDTTELEDQFLAPKEGIKIRAFDAIVPIFTLIILAILGFYFNGLSTLEGEEL
                     AKASTNPLSFETFRAAFGNADSSVVLFQAALFAAIVAIFIGVRRKIFNLKEAVETWIY
                     GWKTMIFTIVLLLFAWSLSSIVKDLGTSLFITSLLADKLPEFILPATIFAFASAISFA
                     IGTSYGTMGILMPLAVPLAHEIAKINGMDANAMHHYMVINISCVLTGAIFGNHCSPIS
                     DNVILSSMSAKCDHMEHVRTQIPYALFICGISLIAGYIPVSLGLSVWFVLPLNFILIA
                     LLLRLIGKKVP"
     gene            6917..7990
                     /gene="trmA"
                     /locus_tag="RJ259_001292"
     CDS             6917..7990
                     /gene="trmA"
                     /locus_tag="RJ259_001292"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HDV7366991.1"
                     /translation="MSLENFGNFLTLDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTR
                     AELSFYHENDTLFYAMFDPKSKKKYIIEYLDFADEKICAFMPRLLEYLRQDNKLKEKL
                     FGVEFLTTKQELSITLLYHKNIEDIKSNLENLSNILHINLIARSKGKKLIFKTENLRQ
                     TLNIQDRKIFYEFNNDCFIQPNTAINEKMITWVCEILNTQKRMDLLELYCGYGNFTLA
                     LAPFFFKILATEISKSNINFALKNCELNNTTNIHFARLSSEELSLAIKKEREFFRLKD
                     IRLDDFNFSHVLVDPPRAGLDKSVIDLIKKYGNIIYISCNPITLKENLKELSLTHRVE
                     EFALFDQFVNTPHLECGVFLSKV"
     gene            complement(7977..8393)
                     /locus_tag="RJ259_001293"
     CDS             complement(7977..8393)
                     /locus_tag="RJ259_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002956941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopD"
                     /protein_id="HDV7366992.1"
                     /translation="MEEFYPYTLTIHLLCAILFIGYLFVDVFVLGVVKKKNPNFDKSL
                     FSATGVKIMPFVVLLLFLSGGALAGFHFKPLNLLFAVKIILAFGILSLVVFSLFCHFI
                     LKKKNPLGVFIHPFVFVLCIAIVILAKLMNYFFIPC"
     gene            8512..>8627
                     /locus_tag="RJ259_001294"
     CDS             8512..>8627
                     /locus_tag="RJ259_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HDV7366993.1"
                     /translation="MNEKETISYIINTSKNIVIFALSPDKTKASYRVAEFLQ"
BASE COUNT         3088 a         1307 c         1434 g         2798 t
ORIGIN      
        1 tcagatttaa gaaaattaaa aaattttaaa tattgtttaa ttcttgaaaa ttatgatatt
       61 tttgagcaag aatttgaaaa caaagaaaat caaaccccaa gcttatttta aattcactcc
      121 ttcattttca agcaaaaatc tttttatttc aagccctcca ttatatcctc ctatgccatt
      181 gcttgcaata actctatgac aaggtataaa aataggaatt tgatttttag aatttgcatt
      241 tccaacagct ctaaaagctt ttggatgatt aattttttct gctatatctt tataagtagc
      301 tattttgcca taaggaattt ccattaaagc cttgtaaacc tttgattcaa aatccgtacc
      361 ttgtatcaaa acaggaatgc taaattttct aagcttatga gtaaaatata aatcaagttc
      421 atattttgct aagtcaagca aactacaatt tttttctgat cttttattat cacaaaaatc
      481 gactctagtt aaaaattttc catcactatg taaagatagg taacataaag gcattttata
      541 ataaacttta aacatttttt atccttcaaa gagctacaat tataataaaa aatatttaag
      601 gagtagaaaa tgtcttttat gcaagaatac aataaacttg ttgaagaaag agccgctttg
      661 ggtataccac cccttccttt aaatgcaaat caaactagag aactttgtaa attacttgaa
      721 aatgaaaata atgaagagct tgcaaatctt ttagaaaata gagtaaatcc tggtgttgat
      781 gatgcagctt tagtaaaatg tgaattttta gattccatac ttaaaggcaa aatcagtgct
      841 ccaaatatag acaaaaaaag agccttaaga atgcttggaa ctatgctagg cggatataat
      901 gttaaagttt taatcgatgc cttaaaagat gaaaacatag ccaaagatgc tgcagaagtg
      961 ttgaaaaata ttatttttgt acatgataat ttccatacca tagctgaact tagcaaaaac
     1021 aatccacacg ctaaggaagt tttacaaagc tgggcaaatg cggactggtt taataaaaaa
     1081 gaaaaactac cacaagtgat taaatgtata gtttttaaag tagcagggga aacaaatacc
     1141 gatgatctaa gccctgcagg agatgctttt acaagaagcg atattccttt acatgcaaat
     1201 gccatgctaa aggtaagaca aacaggatcc ttagaaaaaa tcaaagagct taaaaaaagc
     1261 ggtcgcgaag tggtttatgt aggtgatgtt gtaggaacag gttcaagtag aaaatcggca
     1321 ataaattcca tacaatggca cttaggaaaa gaaatagaag gtgtgccaaa caagcacagc
     1381 ggtggtataa taatgggttc aactatagca ccgattttct ttaacactgc tcaagatagc
     1441 ggggctttac ctatcatctg tgatgtaaca aacttagaaa tgggcgatga gtttgaaatt
     1501 catccttatg agggaaaaat cataaaaaat ggctctacaa tcgcagaatt tacactcagt
     1561 ccaaacactc tcttagatga agttagagca ggaggaagaa tcccacttat cataggtcgc
     1621 gggctttgta ctaaggctag agaattttta ggaatggaaa gtgaaaatat ctttaccaaa
     1681 cctgaacaac ctaaatcttc aagcggtggt tataccttgg ctcaaaaaat gctaggtcgt
     1741 gcctgtggag ttgaaggtgt gcgtccaggt atgtatatag aacctataac tttaactgta
     1801 ggctctcaag ataccacagg tcctatgact agagatgaaa ttaaagaact tgcaagccta
     1861 ggttttaatg cagactttgt tatgcaaagc ttttgccata cagctgcgta tccaaaagta
     1921 agcgattcaa atttacataa aaccttgccc aatttcatga caagtcgtgg tggggtaagt
     1981 ttaaaaccag gtgatggagt tatccactct tggcttaatc gttttgtatt gccagatacc
     2041 gtaggaacgg gcggggattc tcacacacgc tttcctatag gaatttcttt ccctgcagga
     2101 agtggacttg tagcttttgc tgcggttact ggttctatgc ctttaaatgt acctgaaagt
     2161 gttttagtgc gttttagtgg agaattgcaa gccggagtta ccttaagaga tttggttaat
     2221 gctatacctt attatgcaat caaacaagga caacttaccg ttgaaaagaa aaataagaaa
     2281 aatatttttg caggaaaaat tttagaaata gaaggcttgc caaacttaaa agtcgaacaa
     2341 gcttttgaac ttagtgatgc aagcgctgaa agatctgcag ctgcttgcag tgtggattta
     2401 agcatagaaa gtgtaagcga atatatcaaa tccaatatct ctttaattga agctatgata
     2461 gaagtaggat atgagaataa agctaccctt gccagaaggg ctgaaaaaat gagagaatgg
     2521 cttaaaaacc ctactctttt aagagcagac aaagatgcaa aatatgcgta cattatcgat
     2581 attaatctta acaatatcaa ggagccaatt ctagcttgtc caaatgaccc tgatgatgtg
     2641 gcaaccttaa gcgaaatttt agccgatgac aagcgtccaa aaaatataga tgaagttttt
     2701 gtaggttctt gtatgacaaa cataggacat tatagagctt tgggagaaat tttaaaagat
     2761 aaaggcatac ttaaaaccag actttgggta gtgcctccaa caaaaatgga taaagcacaa
     2821 cttatcaatg aaggttatta cagcatcttt ggcgcagcag gtgctagaat agaagttcct
     2881 ggttgttctt tgtgtatggg aaatcaagca agagtaaatg atggtgctgt tgtcttctca
     2941 acctctacaa gaaactttga caatcgtatg ggtatgggtg ctaaagtata tctaggaagt
     3001 gctgaacttg cagcagtttg tgcgattttg ggtaaaattc caagcaagga agaatactta
     3061 caaattgtca gcgaaaaact aagtaatgag cataaggcaa atatctatag atatttaaat
     3121 tttaatgaga ttgaaaattt caaacttgaa aattaattca aatttaatac taaataacaa
     3181 aattaaaatt ttcaaaggaa aaatattgaa gttattattc acttcctttt gttgttttgc
     3241 aagtttaatg gctagcgatg ccattaactg cgacaacatt aaaaataata aaacattgct
     3301 aaatgaaagt tcaaatttag attatttaaa tatagcttca agctgtaaag aatctttaaa
     3361 aaatcaagat tttacaaaaa aactctatgc aatttccaat gaaattcgcg gaagcaatag
     3421 ctcttgtaat ggtgtggctt atttgccaaa attacaacaa tttgattttt tattattaaa
     3481 aatagctatc gatcccatcg cttatcaaaa aactttagat acacccgaaa atttagaaaa
     3541 aaaatatgat attttaaaat cttattttag atattgggca tatcaaagca taggaaattt
     3601 tagactttac aaagcttttt ggcaagaata caataatgct atagaacctt tagaaaagta
     3661 ttttgaaagt aattttaatt ttgacaaagg cagtaatatt tactatacta gcaatgcctt
     3721 aaacgaattt ttaaattggg ctgttggtga aacaaaaatt tacaaagaca ttagtccttt
     3781 agcaaaaatc atgtcaaata aaaattattc agtatcttat atacaagatt ttattttttc
     3841 aaataatcca agccaagatg accttactat agccttgcaa gcagcgcttc taaatcaaag
     3901 agaaaaagaa attttagaac ttttgattcg ttttggcgct aggattgacg aaggttatga
     3961 aagtgctatt ttttatgcat tggaaagtta tgaaaataca aactttttaa tccaaaatgg
     4021 agcaaatgtt aatcaagcca atgcctttgg taaaacccca cttttttatg ccatagagtt
     4081 taatcgtctt gatatcataa aactacttct tgataatgga gcaaatgtta atcaaaaata
     4141 tattaataac aatgaaaaat tagcattaag cgcgaacata ggttcaaata cgccttattt
     4201 tattacattt tgtgctctag agcacacttc aaaaaatgtt ttaatgcatg ctgcagccta
     4261 tggaaatgtt gaaattttaa aacttcttat ttcaaaagga gcaaatttta atgctgttga
     4321 tgatcttggt tttaatgcac tcgactttgc gctatcagca ggtaaaaaag aaaatgctga
     4381 ttatctaaaa agcttgggtt taaaagcaaa cgaaaatcta ttttacggag gtagtttaga
     4441 atgaaaaccg catttattac aggagctagt tcaggttttg gtagagcttg cgttgaagct
     4501 tttatacaag aaggctacaa agcaatcgcc cttgctagac gcaaagagcg tctagaagag
     4561 ttaaaaaatg cttacaaaga taagatttac acgctttgca tagatgtaag aaatcaaaaa
     4621 gaaatctttg aggctattga aaatttaccc aaagaatttc aagaaattga tgtgcttttt
     4681 aataatgcag gtttagcttt aggggtagat gaatttgata aattaaacct tgaagatatt
     4741 aacactatgg tagatacaaa catcaaagga tttttatatg ttgcaaaagc tattattcct
     4801 atacttcgca aacaaaaaaa tgcttatatt tttaacttag gttcggttgc gggacgcaat
     4861 ccttattttg gaggcaatgt gtattgtgga accaaagcct ttgtaggaca attttcattg
     4921 gccttaagaa atgatcttag aggaagcaat atcaaagtaa caaacattgc tccaggactt
     4981 tgcaaaactg aatttagtga agtgcgtttt aaaggagata tccaaaaagc tgatgcagtg
     5041 tatgaaaata cgcaatttat cagtgctaat gatattgcca aagtggtaat gtctatcatt
     5101 aacctaccaa gccatattaa tgttaatgaa atcgagctta tgccggtaac acaaacttgg
     5161 aatggatttt atatagaaag agatgaatga ataaattttt agtttcattg tttttacctt
     5221 tagttgcatt tgcaaactcc tcagaagcag ctgcaaatgc taatttattt ggagctttta
     5281 cgcttatacc acctttagtt gctattgctt tagcctttat cacaaaagat gttattttat
     5341 cgctctttac tggagtttta agtggaactt ttctacttag cctttctaca aatattttta
     5401 aagcacaaca tttaactttt gtaaattatt acaatactac agtagaatct ttttcaaaaa
     5461 ttatttccta tatcttaggt tcaacttcag atccagtaaa tgcaggaatc attttacaaa
     5521 ttctttgtat aggtggtctt gtggcactta tcacaaaaat gggaggtgca aaagctgtag
     5581 cattaaaatt tgccaaaaga gccaaatcag ctgtatcagc tcaagttaac acttggtttt
     5641 tagggctttt aatatttttt gatgactatg ctaatttact aatcgtaggt ccaattatgc
     5701 gtcctttggc agataaattt aaaatttctc gtgaaaaatt tgcctttatt atcgactcta
     5761 ccgcagctcc tgtggcagga atagctgtaa tttctacttg gataggctta gaagtttctt
     5821 taattaaaac cgcttatgaa cacataggca ttagcaatat tagtgctttt ggaatttttg
     5881 ttgaaaccat accttatcgt ttttataata tcttcatgct tttttttgta gtcatgactg
     5941 caatcatggg gcgtgagttt ggttctatgt acaaggctga agtgcgtgca agaaccacag
     6001 gacaaattgc tcctctacct aaatcaggca cactagatac tactgaatta gaagatcagt
     6061 ttttagcacc aaaagaaggt attaaaattc gtgcttttga tgctattgtt cctattttta
     6121 ctttaatcat tttagctata ttaggatttt attttaatgg acttagcact ttagaaggcg
     6181 aagaacttgc aaaagcaagt accaatcctt tgtcttttga aacttttaga gctgcttttg
     6241 gaaatgctga ttcttctgtg gtgttattcc aagctgcttt gtttgctgct attgtagcga
     6301 tttttatcgg ggtgcgtcgt aaaattttca atcttaaaga agcggtagaa acttggatat
     6361 atggctggaa aaccatgatt tttaccatag tattgctttt atttgcttgg tcactttcaa
     6421 gcatagtaaa agatctagga acttctttat ttatcactag tttgcttgca gacaaattgc
     6481 ctgagtttat tttgcctgct actatttttg cttttgcttc agccatttct tttgccatag
     6541 gaacaagcta tggaactatg gggattttaa tgcctttagc tgtgccttta gctcatgaaa
     6601 tcgccaaaat caatggtatg gatgcaaacg ctatgcatca ttatatggtt attaatataa
     6661 gctgcgtttt aacaggtgcg atttttggaa accattgctc accaatttca gataatgtaa
     6721 tcctttcatc tatgagtgca aaatgcgatc atatggagca tgtaagaaca caaattcctt
     6781 atgctttatt tatctgtggc atttctttaa tcgctggata tattcctgta tctttaggac
     6841 ttagcgtttg gtttgtcttg cctttaaatt tcatacttat tgcactttta ctaagactca
     6901 tcggaaagaa agttccatga gtcttgaaaa ttttggaaat tttctcactt tagatgaaaa
     6961 acattctttc ataaaaaaat attttaaaga attttataca aaggatttta aactttttgc
     7021 ttcaaaagat aaacattatc gtacaagagc tgaactttca ttttatcatg aaaatgatac
     7081 gcttttttat gcaatgtttg atccaaaaag caaaaaaaag tacattatag aatatttaga
     7141 ttttgctgat gaaaaaattt gtgcttttat gccaagactt ctagaatact tgcgtcaaga
     7201 taataaatta aaagaaaaac tttttggtgt agaattttta accacaaagc aagaacttag
     7261 cataacctta ctctatcata aaaatataga agatataaag tcaaatttag aaaatttaag
     7321 caatattctt catatcaacc tcatagcaag aagtaaaggc aaaaaactta tttttaaaac
     7381 agaaaatcta agacaaactt taaatattca agatagaaaa atattttatg aatttaacaa
     7441 cgattgtttt attcagccta atactgctat aaatgaaaaa atgattactt gggtgtgtga
     7501 aattttaaac actcaaaaaa gaatggattt gcttgagctt tactgtggat atggaaattt
     7561 tactttagct ttagcgccat tcttttttaa aattttagcc actgaaattt caaaaagcaa
     7621 tattaatttt gctttaaaaa attgcgagct taacaataca acaaatatcc actttgcaag
     7681 actttcaagc gaagaattaa gtcttgctat caaaaaagaa agagaatttt ttcgtttaaa
     7741 agatattcga ttagatgatt ttaatttctc tcatgtttta gttgatccac cccgtgcagg
     7801 acttgataaa agcgtaattg acttaataaa aaaatatgga aatattattt atatttcttg
     7861 caatcctatc actttaaaag aaaatttaaa agaattaagc ctaacacata gagtggaaga
     7921 gtttgctctg tttgatcaat ttgtcaatac tccacatctt gaatgtggag tatttcttag
     7981 caaggtataa aaaaataatt cattaattta gccagtatta ctatcgcgat acaaagcaca
     8041 aatacaaaag ggtggataaa aacaccgagt ggatttttct tctttaatat aaaatgacaa
     8101 aataaagaaa aaacaactaa agataaaatt ccaaaagcca aaataatttt tacagcaaaa
     8161 agtaaattta aaggtttaaa atgaaaacct gccaaagcac ctccacttaa aaaaagcaaa
     8221 agaacaacaa aaggcattat tttaactcca gtagcactaa aaagactttt gtcaaaatta
     8281 ggatttttct ttttaactac acccaaaaca aatacatcaa caaacaaata acctataaac
     8341 aaaatagcac aaagaagatg gattgttaaa gtatatggat aaaattcttc catttttccc
     8401 tccttattaa acttcggaat ttgctatatt ataacacttt tttcattttt tgaattcact
     8461 ttagttaatt ttttaatcat ttaagataaa ataccaaaac aaaggttaac aatgaacgaa
     8521 aaagaaacta tctcttatat tataaataca agtaaaaata ttgtcatatt tgctttaagt
     8581 ccagataaga caaaagcttc ttatagggta gcagaatttt tacaaag
//
LOCUS       DAPIWJ010000068         8547 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.069, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000068 DAPIWJ010000000
VERSION     DAPIWJ010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8547)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8547)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8547
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.069"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            9..434
                     /gene="exbB"
                     /locus_tag="RJ259_001295"
     CDS             9..434
                     /gene="exbB"
                     /locus_tag="RJ259_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HDV7366994.1"
                     /translation="MEFLKDYIDLIIFLILGIMAFIAFWCVVERMLFFRKINFKNYEN
                     QEQFDDAISENLTTIYIIYSNAPYIGLLGTVIGIMVTFYEMGLAGNIDVKSIVVGLSL
                     ALKATALGLLVAIPALMAYNALLRKVSLLSNAYKANKNA"
     gene            427..816
                     /gene="exbD"
                     /locus_tag="RJ259_001296"
     CDS             427..816
                     /gene="exbD"
                     /locus_tag="RJ259_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HDV7366995.1"
                     /translation="MLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPS
                     SENATNISNNEKKLLITIDEKNTFYLNDKLADLNEVQNAIFSLDKKTIVELKSDKNAK
                     FESFVKIIDFLKAKEHENFQILTEKNK"
     gene            813..1496
                     /locus_tag="RJ259_001297"
     CDS             813..1496
                     /locus_tag="RJ259_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDV7366996.1"
                     /translation="MKTLFLNHKYQASYITFIVFIPLLFVIFHSNDFFKMEIKNEDSF
                     SLAIKQFTQTNPTNETKPTESIIEPIKPKPQPKVIKKTPEKMQKKIKKTPPHPIPNKT
                     PIAPTQEVKTFAKTTDTNVKPKITQLTQGKDNHPVLKEIQKAIQQAQFYPRQAKKMRM
                     QGTVKVEFLWKENKTLADLKIIEISGYDLLDKSALESIRKASLNFPHYNGDLRITLPI
                     IYDFKTLRG"
     gene            complement(1509..2377)
                     /locus_tag="RJ259_001298"
                     /pseudo
     CDS             complement(1509..2377)
                     /locus_tag="RJ259_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345000.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2381..2542)
                     /locus_tag="RJ259_001299"
     CDS             complement(2381..2542)
                     /locus_tag="RJ259_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7366997.1"
                     /translation="MLKIILVLSILSSFAFANSCANYEQELKKCNSLKNSHERKMCRL
                     GLFAKCKKG"
     gene            2637..3620
                     /locus_tag="RJ259_001300"
     CDS             2637..3620
                     /locus_tag="RJ259_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MnmA/TRMU family protein"
                     /protein_id="HDV7366998.1"
                     /translation="MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSE
                     IMKKRAAMVGADFEMIDVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKE
                     ENASFIITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWV
                     DREKLEGIIGRSRKRQLELAAKFGLEDFESPGGGCLLTLDSFAKKIRDFIEFDKDMQV
                     NDAQLLKYGRHLRLPNGAKMIIGRNELENTLLKGLKTPKYEAIEIGDLIGAYSLVDEK
                     ISEKDLELALKIALTYTKHEVGKSYELKFKNQAYTSIAFENKADINQFFIS"
     gene            complement(3706..4794)
                     /gene="aroC"
                     /locus_tag="RJ259_001301"
     CDS             complement(3706..4794)
                     /gene="aroC"
                     /locus_tag="RJ259_001301"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HDV7366999.1"
                     /translation="MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELD
                     KRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPA
                     HADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLREFDICVQSGVFGVGTFV
                     SNLKEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGL
                     GEVLYDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSCNNDALKDGKFLSNHSGGI
                     LGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLKFELKGRHDPCVGVRGSVVASA
                     MVRLVLADCLLLNASANLNNLKNAYGLK"
     gene            complement(4794..5468)
                     /locus_tag="RJ259_001302"
     CDS             complement(4794..5468)
                     /locus_tag="RJ259_001302"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HDV7367000.1"
                     /translation="MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGD
                     AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENN
                     GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQ
                     EITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIAL
                     EKLGAL"
     gene            complement(5455..5895)
                     /gene="rnhA"
                     /locus_tag="RJ259_001303"
     CDS             complement(5455..5895)
                     /gene="rnhA"
                     /locus_tag="RJ259_001303"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HDV7367001.1"
                     /translation="MKHIEIYTDGSCLNNPGFGGWAYILRYKEYQKEGFGAEANTTNN
                     RMELMAIIESLKALKEPCEISLFTDSNLMVQSINEWLEGWIKKDFKGKKNIDLWKEYI
                     KVAKSHKIKAFWVKAHNGHLENERCDTLAREAALKIARENDEKH"
     gene            complement(5882..6868)
                     /locus_tag="RJ259_001304"
     CDS             complement(5882..6868)
                     /locus_tag="RJ259_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367002.1"
                     /translation="MDFFFVEYRDPLVGLIILTILVFVVAVANYIWKIFANKDEEQKL
                     EKFIKKFEMDNAHKELLRNSSLSFGNLSFLAEIFTKSGEFEKATQIYLIALEKCKDKQ
                     EREFIFLSLAKVYFKAGFLERAKEVLLQALKLRPRNIQALKLLKIVYLKLRSYKENLE
                     LLECLFELNEDVQKERDFIKALELCTFNITDEEKKKKLLEFKIEDNPMLGRLVFEKYH
                     MFLGQNFFDICDLLYRENEAFNLENQDFLEFFYALGKISKHDDTHQFVFKNSNFKMLK
                     ILKDNSFNAGLEFSYRCSECKNVMPLFFYHCPVCYEFNTCKIIYEVKNNETH"
     gene            6938..>8547
                     /locus_tag="RJ259_001305"
     CDS             6938..>8547
                     /locus_tag="RJ259_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDV7367003.1"
                     /translation="MITKESIENLSQRLNIVDIIENYIEVKKQGSSFVCICPFHADKN
                     PSMHINPIKGFYHCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYTKEKQE
                     NKKELKSILPSLNAYFKDNLKHHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLL
                     QNQKIPLEDAMSVGALKKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAK
                     YVNSPQNILFDKSRIFYAFNIAKENIAKKKEIIVCEGYMDAIAFHKAGFNNAVAVLGT
                     ALTEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGKVAILQGGKDPAE
                     LVAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLEPLV
                     ANSYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEKIHIAELELIAFLK
                     QHPDICNDFKQISDSVCFKHKILLDKILEKKGYEDSDIREFESKNIRKNLNYSEFLLG
                     ICKVNLAFLNNVKIKNSTLALKKQLFTL"
BASE COUNT         3081 a         1451 c         1102 g         2913 t
ORIGIN      
        1 agaaaaatat ggaattttta aaagattaca tcgatttaat tatcttttta attctaggaa
       61 ttatggcatt tatagctttt tggtgtgttg tagaaagaat gctatttttt agaaaaatta
      121 actttaaaaa ttatgagaat caagagcaat ttgatgatgc gattagtgaa aatttaacca
      181 ctatatatat catctattcc aatgcccctt atataggact tttaggcact gtaataggca
      241 tcatggttac attttacgaa atgggcttgg cgggcaatat agatgtcaaa tctatagtcg
      301 tggggctttc tttagctctt aaagctacag ccttaggact tttggttgct attcctgctt
      361 taatggctta taatgcctta cttagaaaag tttccctctt aagcaatgct tataaggcaa
      421 ataaaaatgc ttaaactacc aaaaaatgaa ggtttaaata tagtcccatt tatagacatt
      481 atgcttgttt tgcttgctat agtacttagt atttcaacct ttattgcgca tggaaaaatt
      541 caaatctcac ttccttcaag tgaaaatgct accaatataa gcaataatga aaaaaaactt
      601 cttataacca tagacgaaaa aaatactttt tatttaaatg ataaattagc tgatttaaat
      661 gaagttcaaa atgctatttt ttcacttgat aaaaaaacca tagtagaact aaaaagcgat
      721 aaaaatgcta aatttgaaag ctttgtaaaa attatagatt ttttaaaagc caaagaacat
      781 gaaaattttc agattcttac tgagaaaaac aaatgaaaac tttattttta aatcataaat
      841 accaagcttc ttatataact tttatagtct ttataccttt actttttgtc atttttcact
      901 caaatgactt ttttaaaatg gaaattaaaa atgaagattc tttttcttta gcaataaaac
      961 aatttaccca aactaatcca acaaatgaga ctaaaccaac agaatccatt atagaaccta
     1021 tcaaaccaaa acctcagcca aaagttatta aaaaaactcc tgaaaaaatg caaaaaaaga
     1081 taaaaaaaac acctccacac ccaataccaa ataaaacccc aatagcacca actcaagaag
     1141 ttaaaacttt tgcaaaaaca actgatacaa atgtcaaacc taagatcact caattaacac
     1201 aaggaaaaga taatcaccct gtattaaaag aaatccaaaa agctatacaa caagcacaat
     1261 tttatccaag gcaagcaaaa aaaatgcgta tgcaaggaac tgtaaaagta gaatttttat
     1321 ggaaagaaaa caaaacttta gcagatttaa aaatcataga aatctcggga tatgatttgt
     1381 tagataaaag tgctttagaa agcataagaa aagcttcttt aaattttcca cactataatg
     1441 gagatttaag aattacacta cctattatat atgattttaa aaccctaaga ggataaaatt
     1501 ataatttgct acactctctt atctacaatt tgtgcttctt gattttcaat tttattttga
     1561 aaatctttac ttaaattctg acttaattct tgcaaagatt tttgcttcag tttttcaaat
     1621 tcttcaggat tgctagcctc aagctttgcc tgctcatcag cacttaaagc acttaaacct
     1681 ttttcttgag ctttttgaag caaatcttcg tcttcttttt ctttgatatt attttcctta
     1741 tcatcttttt tattgatttt ttgcggatct atggttttca tagcattagc tccaccacct
     1801 gatgcttctt taatgtcgct taaaatttct ctcatgctag gttctttaac atcactatca
     1861 tcaactttac catctttatt tacatcttta tcaataaaaa aatttaattt ttcttctata
     1921 tttgcatcat cagatatttt ttcatcactt gttttaaagc ctaaattttg catactttgt
     1981 tgaagggtac ttgtattaaa atttaatttt acactttgtt gtttattatt taaatttgaa
     2041 tttaaagaac caaaattatc ttttacactt tcaaaccaat ttgaaacaaa ttgatttact
     2101 tcgccattaa gccttatact accatcattt ctagcaacat aattcatata agaaccgaaa
     2161 ttttttgtaa actactataa ttttcatcgc ttaaatttaa agctataagt tcaccttgct
     2221 tattttcaaa aacaacctta acaccatcgc tatttaaact cgaaagatct tgcacgggaa
     2281 ttttatcttg atcttctttt tttaatacgc taagctcttt tttatcaaca ttattagtta
     2341 aagaatgggt taaactagca gaagtatcga ttttcattat ttatcctttt ttacattttg
     2401 caaataaacc taaacgacac atttttctct catgtgaatt ttttaaagaa ttacactttt
     2461 taagttcttg ctcgtagtta gcacaagaat ttgcaaaagc aaaagaactc aaaatgctta
     2521 aaaccaaaat tatttttaac attttccaat ccttatttta aagatttttt agttaaaatt
     2581 atacctttta taatcgacaa aatcttaaaa aactttataa tctcagaaag gaatcaatga
     2641 aagcattagc tctttttagc ggtgggcttg atagtatgct tgcaatgaaa ctcatcactg
     2701 cacaaggcat agaagttaaa gctctaaata tcaacatagg ttttggaagc acaagtgata
     2761 aaagcgaaat catgaaaaag cgtgcggcaa tggtaggtgc agattttgaa atgatagatg
     2821 taagaaattc ctatcttcaa gaagtgcttt ttaatccaca atatggctat ggcaaacatt
     2881 ttaatccttg tatagattgt catgctttta tgtttaaaac tgctcttgct atgttaaaag
     2941 aagaaaatgc aagttttatc atcacaggag aagttttagg acaacgccct atgagtcaaa
     3001 gaagtgatgc aatggcaaag gttaaaaaac ttgctcttga tgaagaagat ttaatcttgc
     3061 gtcctatgtg tgcaaaaaac ctacctctaa ccaaacctga aagagaaggt tgggtagata
     3121 gagaaaaact cgaaggtatt attggaagaa gtcgtaaaag acaacttgaa cttgcagcta
     3181 aatttggctt agaagacttt gaaagcccag gtggaggttg tttgctaact cttgatagtt
     3241 ttgctaaaaa aattcgagat ttcatagaat ttgacaaaga tatgcaggtt aatgacgcac
     3301 aacttttaaa atatggtcgt catttaagat tacccaatgg agctaaaatg atcataggta
     3361 gaaatgaact tgaaaatact cttttaaaag gtttaaaaac tcctaaatat gaagcaatag
     3421 aaattgggga tttaatcgga gcttactctt tggtagatga aaaaatttca gaaaaagact
     3481 tagaacttgc cttaaaaata gcccttacct atactaaaca cgaagtagga aaaagctatg
     3541 aacttaaatt taaaaatcaa gcttatacaa gtatagcttt tgaaaataag gctgatatta
     3601 atcaattttt tattagttaa agtataaagt atttagcaaa acaagcgata tagtatttga
     3661 atcttttcaa aatattgcaa tcaagcccat gaaaatgggc tttttttatt ttaatccata
     3721 agcatttttt aaattgttta aattcgcact cgcattcaaa agcaaacaat cagccaaaac
     3781 taaacgtacc atagcactag ctacaacact tcctctaaca cctacacaag gatcatgcct
     3841 acctttgagt tcaaatttca aattattgcc aaatttatct atactttctt gcttggcaaa
     3901 aatagaagga gtaggtttaa aataagtttt taaaataaga ttttctccat ttgaaattcc
     3961 tcctaaaatt cctccgctat gattgcttaa aaacttgcca tcttttaaag catcattatt
     4021 acacgatccg cgcattttgc ttgcattaat accttcgcct atttcaactg ctttaacagc
     4081 attaattccc attaaagcat gagctaattt agagtctaac ttatcataaa gaacttctcc
     4141 aagtcctata agcataccac taacttttgt aaaaacagca gcgcctacgc tatcttttga
     4201 atttctagca tttaaaattt catttttaaa gtcactttct agttttggat caaggcaaaa
     4261 aatttcactt ttcttagcaa attcaaaatc aaattcttct tctttcaaat ttgatacaaa
     4321 agttcctact ccaaaaacac cactttgaac acaaatatca aattcacgca aaagcatcgc
     4381 tgcaactgca ccaccagcca ctctagcaac actttcccta gcgcttgatc tacccccacc
     4441 cctatgatct cttatgccat atttataaaa ataagtaaaa tccgcatgag caggacgaaa
     4501 tagatctttt aaattatcat aatctttaga atgagcattt tcattaaaaa ctactatagc
     4561 tatgggatga cccgttgtat atccttcaaa aaccccgctt aaaacctgag ctttatcgct
     4621 ttcttttctt ggtgttgcaa atttacttcc gcctttgcgt ttatcaagct cattttgcaa
     4681 aaattcttca tcaaatttaa ccccagcagg cattccatca ataatacatc caacagccac
     4741 accatgagac tcaccaaaac ttgtaaattt caatctcgta ccaaaggtat tcactataaa
     4801 gctcctaatt tctcaagtgc aatttttgct gccatttgct gtgcttcttt tttgcttcct
     4861 gcaatagctc ttgcaagttc tttaccatca agcattaaag caatttcaaa ttgctttaaa
     4921 tgatcagggc caaaagcacg cactgtttca tactgcggag tttgtccgat ttttccctgt
     4981 gtaatctctt gtaattttgt tttataatct tttataagaa tttttgcatc aatttgaggg
     5041 aaattttttt ctataagcct taaagcaata gtttttgcaa actcgaaccc agcttctaaa
     5101 tgtatagcac ctataatggc ttctaacgca tctgaaagta tagaaggctt ttcttttcct
     5161 ccattgtttt cctcagcaac actcataaga ataaaatcgc ccaaatttaa actatttgca
     5221 atttttgcaa aagacttttc atttactaaa gctgctctaa gcttagataa atctccttcg
     5281 gcatctttgg cgaatttatg aaaaaggtat tcacctacaa ctaaatcaag cacggcatca
     5341 cctaaaaatt ccaagcgttc gttgttgtaa gattttttaa aacttttatg ggttaaagca
     5401 tgtataagaa gatttttatc tttaaattca taagttaaac tctgctctag cttttcaatg
     5461 tttttcatca ttttcccttg caattttcaa agcagcttca cgcgccaatg tatcacacct
     5521 ttcattttcc aaatgtccat tatgtgcttt tacccaaaaa gccttaatct tatgagattt
     5581 tgccacttta atatattcct tccataaatc tatatttttt ttacctttaa aatccttttt
     5641 tatccatcct tctagccatt cattaatact ttgaaccatt aggttagaat ctgtaaaaag
     5701 cgaaatttca caaggctctt ttaaagcctt caaagattca ataattgcca ttagctccat
     5761 tctattgtta gtggtattag cctcagctcc aaaaccttcc ttttgatact ccttataacg
     5821 caaaatataa gcccatccgc caaaacctgg attattaaga catgagccat ctgtataaat
     5881 ttcaatgtgt ttcattgttt ttcacttcat aaataatttt acaagtatta aactcataac
     5941 aaacaggaca gtgataaaaa aacaaaggca ttacattttt acactcagaa caacgatatg
     6001 aaaattctaa ccccgcatta aaagaattat cttttaaaat ttttaacatt ttaaagttag
     6061 aatttttaaa aacaaactgg tgcgtatcat catgctttga aattttaccc aaagcataaa
     6121 agaattctaa aaaatcttga ttttctaaat taaacgcttc attttctcta taaagcaaat
     6181 cacaaatatc aaaaaaattt tgccctaaaa acatatgata tttttcaaaa actaaacgcc
     6241 ccaacatagg attatcttct attttaaatt ctaaaagttt tttctttttt tcttcatcag
     6301 taatattaaa agtacaaagt tctaaagctt tgataaaatc acgctctttt tgtacatctt
     6361 cattaagctc aaaaagacat tctaaaagtt ctaaattttc tttataagaa cgaagtttta
     6421 aataaacaat ttttaaaagt tttaaggctt gtatatttct tggacgcagt tttaaagctt
     6481 gtaataaaac ttcttttgca cgctctaaaa atcctgcttt aaaataaact tttgctaaag
     6541 aaaggaaaat aaattctctt tcttgtttat ctttacattt ttcaagagca atcaaataaa
     6601 tttgagttgc tttttcaaat tccccgcttt tagtaaaaat ttcagccaaa aaacttaaat
     6661 ttccaaaact caagctacta tttcttaata actctttatg agcgttatcc atttcaaatt
     6721 tttttataaa tttttcaagc ttttgttctt catctttgtt agcaaatatt ttccaaatat
     6781 aatttgcaac agctacaaca aatactaaaa tggttaaaat tataagccct actaaagggt
     6841 ctctgtattc tacaaagaaa aaatccatag tctcgctcta aaaattttat gccaaattat
     6901 agccaaatct ttgtataatt ttaacaaggt ttgtaaaatg ataactaaag aaagtataga
     6961 aaatttatcc caaagactta atattgttga tattatagaa aattatattg aagtaaaaaa
     7021 acaaggctct agttttgtat gtatctgtcc ttttcatgca gataaaaacc cgtctatgca
     7081 tatcaatcct atcaaaggtt tttatcattg ttttgcctgc aaggctggtg gagatgcttt
     7141 taaatttgta atggattatg aaaaattaag ttttgctgat gcagttgaaa aagttgcaag
     7201 ccttagtaat tttactttga gttatacaaa agaaaaacaa gaaaataaaa aagagctaaa
     7261 gtctatacta ccaagcttaa atgcgtattt taaagataat ctcaaacacc acaaagaagt
     7321 tttaacctat ctttaccaga gagctttaaa tgacaaagat atagccaaat tcgaattagg
     7381 ttttgcagga gcaagtgaag atagtataag attattgcaa aatcaaaaaa ttcctttaga
     7441 agatgctatg agtgttggag ctttaaaaaa agatgaaaat aatgaatttt acgcaagttt
     7501 tatatggcgt atcacctttc caatctacga tcataaagac ttattggtag ggtttggagg
     7561 gcgcacttta aatcccaatg taccggcaaa gtatgtaaat tcaccccaaa atatactttt
     7621 tgataaaagt agaatttttt atgcttttaa catcgctaaa gaaaatatag ccaaaaaaaa
     7681 agaaataata gtatgtgaag gctacatgga tgcaatagct tttcacaaag cagggtttaa
     7741 caatgctgta gcagttcttg gaacagcatt aaccgaacat catctaccct taatccgccg
     7801 ttatgatgca aaagtgattt tatgttttga caatgatgaa gcaggattaa aagctgcgac
     7861 acgatctgca tttttattaa gcacaaacaa aatagacggt aaagtggcaa ttttgcaagg
     7921 cggaaaagat cctgctgagc tcgtagcaaa aaatgaaagc acaaaactcc ataatatact
     7981 cgatgaagga atagagcttg gtgaatttta tatcagacgc ttaatatcca ctcattccat
     8041 aatttctgct cttgataaac aaaaagcttt agaaactata caaaaattca cctttaatct
     8101 tgaaccttta gtggcaaatt cttacactag tctagtttca aatttattaa aagtggatga
     8161 aaaatttatt gtcttatcac aaaattcaaa aaaaaccata caaacccctt taatttctca
     8221 aaataaatac aattttccta aagaaaaaat tcacattgca gaattagaac ttatagcttt
     8281 tttaaaacag catccagata tatgtaacga ttttaagcaa attagtgata gtgtttgttt
     8341 taaacataag attttattgg ataaaatttt agaaaaaaaa ggttatgaag atagtgatat
     8401 tagagaattt gaaagtaaaa atattcgaaa aaatttaaac tatagcgaat tcttgttagg
     8461 tatttgcaag gttaatttag cttttttaaa caatgtaaaa attaaaaatt ctacactcgc
     8521 attaaaaaaa caacttttta cgcttat
//
LOCUS       DAPIWJ010000069         8070 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.070, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000069 DAPIWJ010000000
VERSION     DAPIWJ010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8070)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8070)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8070
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.070"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            72..458
                     /locus_tag="RJ259_001306"
     CDS             72..458
                     /locus_tag="RJ259_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HDV7367004.1"
                     /translation="MPTINQLVRKERKKVLEKSKSPALKNCPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGAL
                     DTAGVAKRTVSRSKYGAKRPKAGAAK"
     gene            528..998
                     /gene="rpsG"
                     /locus_tag="RJ259_001307"
     CDS             528..998
                     /gene="rpsG"
                     /locus_tag="RJ259_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HDV7367005.1"
                     /translation="MRRRKAPVREVLPDPIYGNKVITKFINSLMYDGKKSTATTIMYG
                     ALEAIDKKGGEKKGIDIFNDAIENIKPLLEVKSRRVGGATYQVPVEVRPARQQALAIR
                     WIISFARKRSERTMIDKLAAELLDAANSKGASFKKKEDTYKMAEANKAFAHYRW"
     gene            1011..3086
                     /gene="fusA"
                     /locus_tag="RJ259_001308"
     CDS             1011..3086
                     /gene="fusA"
                     /locus_tag="RJ259_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HDV7367006.1"
                     /translation="MSRSTPLKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH
                     DGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGA
                     VAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPV
                     PLQIPIGAEDNFKGVIDLVTMKALVWEDDTKPTDYVEKEIPAELKEKAEEYRTKMIEA
                     VSETSDELMEKYLGGEELSLEEIKTGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVV
                     AYLPAPDEVANIKGEYEDGTEVSVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCL
                     ESGSYAYNSTKDKKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLASEK
                     DKVILERMDFPDPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEENGQTIIS
                     GMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHV
                     FLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQEALQNGVLAGYPVEDVKVTVY
                     DGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMMKVEVETPEDYMGDVIGDLNK
                     RRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQGRATYSMEFDHYDEVPKNVA
                     DEIIKKRNG"
     gene            3115..3191
                     /locus_tag="RJ259_001309"
     tRNA            3115..3191
                     /locus_tag="RJ259_001309"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3149..3151,aa:Arg,seq:cct)
     gene            3209..3358
                     /locus_tag="RJ259_001310"
     CDS             3209..3358
                     /locus_tag="RJ259_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367007.1"
                     /translation="MIKIAFFITFVISFLAAQSPVNFKEDNNITKERNIFKEQSPKRI
                     KIPTH"
     gene            3364..4065
                     /locus_tag="RJ259_001311"
     CDS             3364..4065
                     /locus_tag="RJ259_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HDV7367008.1"
                     /translation="MSDLITLAQLSQGYRYNSDSLILADFILKQGIKGAVFDVGAGCG
                     IIGILLKKNIANLSLSLIDIQKENIKLIEKNLKSNKIQGDIFHDDFNQFQIIKKFDFI
                     VCNPPFYRQGAYKSEDQHKAISKFQEFLPLHSFLAKTNSMLKPNGTLYFCYEALALDE
                     ICFILKDMKMKITKLCFVHTHQNKKARLVLIQVKKGSKSPCEILPPFFVYENEILSKQ
                     MQEIHLRFRLKSYDI"
     gene            4055..4429
                     /locus_tag="RJ259_001312"
     CDS             4055..4429
                     /locus_tag="RJ259_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HDV7367009.1"
                     /translation="MIFDKNFSYAFDENACEKCGGKCCTGESGNIFASKEELEALRKH
                     LNLESKEFAEKYLRKVGFKMSFKEVECEDGFACIFFDTQKRNCSIYDFRPKQCRTFPF
                     WEYFKTHQKELEKECIGICYLS"
     gene            4402..5679
                     /locus_tag="RJ259_001313"
     CDS             4402..5679
                     /locus_tag="RJ259_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HDV7367010.1"
                     /translation="MYRYLLFVLAAFFLAACGSSKINVVYPDYTKYKSNDFDLRVMKA
                     YNYEYYKQYKEARDEFLSLYQDYNNTNFLENAFLLSLANNLDKQAELDNLAKPYLNQN
                     DNLKRLSALYALNSNDINNAQKLMKELLTKKDSDPRNLELYGDILVKKNDLKNATKYY
                     RSAYNQVQNEEILFKLIGIYAILNDTLNIKNVLEFSRKTNGCTLKTCVLLAKIYFDEK
                     NIEALKSIYKELYQLTKNKSFVLALVELLNSQGKTEEALKISLQYDLDDDIKLALYQN
                     LKRFDDAKKMSLALYHKTKNKEYLLRAAVFEFEAANEAKKITPKVIDSVKEKFEQAID
                     KDSNALYLNYYGYLLIDYDLDVKKGIELVKLALEKDPQNLYYLDSLAWGYYKLGDCKQ
                     AWEILKQTLDDKEFANSDESKAHIKAIKACIKP"
     gene            5676..6452
                     /gene="trpC"
                     /locus_tag="RJ259_001314"
     CDS             5676..6452
                     /gene="trpC"
                     /locus_tag="RJ259_001314"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HDV7367011.1"
                     /translation="MILDKIFEKTKEDLKERKLKLPYDMLGRSLASNPFFPKDVIKAL
                     KRVEKEVKIIAEVKKASPSKGVIREDFDPLSIALNYEKNKAAAISVLTEPHFFKGSLE
                     YLSLIRRYTQIPLLRKDFIFDEYQILEALVYGADFVLLIAKMLSMKELKKLLEFARHL
                     GLEALVEIHDKEDLSKAIFAGADIIGINHRNLEDFTMDMSLCEKLIPQIPNSKIIIAE
                     SGLENKEFLEHLQNLGVDAFLIGEYFMREKDEGKALKALL"
     gene            6462..6947
                     /locus_tag="RJ259_001315"
     CDS             6462..6947
                     /locus_tag="RJ259_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HDV7367012.1"
                     /translation="MQYLYAPWRSEYFEKVKSICPFCDCANKIKSDEELGVIFRAKHC
                     FGVMNRYPYSAGHFMVIPYIHEEHIENLSDEIWQEMSYFVRLGVKILKEQIHANGVNI
                     GMNLSKDAGAGIAFHCHYHLVPRWSGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNA
                     Q"
     gene            6937..7935
                     /gene="mnmH"
                     /locus_tag="RJ259_001316"
     CDS             6937..7935
                     /gene="mnmH"
                     /locus_tag="RJ259_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HDV7367013.1"
                     /translation="MLSEVEFVEFQKENFSLLIDARSPREFLHSHLIGALNFYALNDE
                     EYQEIGTIYKKNQALAKAMGASYICQNTTKHILEITQNFRIGEKVGIYCSRGGLRSKS
                     IAVILSELGFRVVRLKGGFKAYRTFVTHYFENEINFDFFALCGNTGCGKTELLEQLPQ
                     AINLEKMANHLGSSFGDILGKQPTQKAFEAELFHNIQNLENFAFIESESRKIGDIILP
                     LKFYEKMQKAFKIYCFCSLENRVRRIQKIYQEKMTPLKFQQCVQKISPYISLNLRQDL
                     LQSYERKEWQKLIVMLLEYYDKTYKKPDKIDLELNTDDILKAKEELLDHFKVQLLF"
BASE COUNT         2889 a         1045 c         1558 g         2578 t
ORIGIN      
        1 agtttatatt tttgtaagta aattttagat atcatccaaa gtttattaca tttttaaaga
       61 aaggaattat tgtgcctacc ataaatcaat tggttagaaa agagcgcaaa aaagttttag
      121 aaaaatctaa atctccagcg cttaaaaatt gtccacaaag aaggggagtt tgcactaggg
      181 tttatactac aacacctaaa aaaccaaact cagcgttaag aaaagttgcc aaagtaagac
      241 ttactagtgg ctttgaagtg atcagctata tcggcggtga aggtcataac ttgcaagaac
      301 acagcattgt tttagtgcgt ggtggtaggg taaaagactt accaggggtt aaatatcaca
      361 tcgttcgtgg tgctcttgat acagcaggtg ttgcaaaaag aacagtttct cgttctaaat
      421 atggtgctaa acgtcctaaa gcaggcgctg caaaataatc attcatacag acaaatccgt
      481 tagatttgat tttgtttgag taaaatttaa aatttgaagg aaaaataatg agaagaagaa
      541 aagctccggt aagagaagtc ttgcctgatc cgatttatgg taataaagta atcacaaaat
      601 ttattaattc tttaatgtat gatggtaaaa aaagcacagc tacaacaatt atgtatggtg
      661 ctttggaagc tattgataaa aaaggtggcg agaaaaaagg tattgatatt tttaatgatg
      721 cgattgaaaa tattaagcct ttattagaag taaaatctcg tcgtgtaggt ggtgcaactt
      781 atcaagttcc agttgaagtt cgtcctgcta gacaacaagc tttggcgatt cgttggatta
      841 tttcttttgc aagaaaaaga agcgaaagaa ctatgattga taaacttgca gctgagcttt
      901 tagatgcagc aaatagcaaa ggtgcttcat ttaagaagaa agaagatact tataaaatgg
      961 ctgaagcaaa taaagcattt gctcactatc gttggtaaga aggagtgtgt atgtcaagaa
     1021 gtactccttt aaaaaaagtt agaaatatcg gtattgctgc tcacattgat gcgggtaaaa
     1081 cgactacatc tgaaagaatt cttttcttta caggtatgag tcataaaatc ggtgaagttc
     1141 atgatggtgc tgcaactatg gactggatgg aacaagagaa agagcgcggg attactatca
     1201 cttctgcggc tacaacttgt ttttggaaag atcatcaaat caatcttatt gacactccag
     1261 gccacgtgga ttttacaatt gaagttgaaa gatctatgcg tgttcttgat ggtgctgttg
     1321 cggtattttg ttcagtgggt ggggtgcagc ctcaaagtga aacagtttgg agacaagcaa
     1381 ataaatatgg tgttccaaga atagtatttg taaacaaaat ggatagaatc ggtgcaaatt
     1441 tctacaatgt agaagatcaa attcgcaacc gtttaaaagc taatccagtt ccacttcaaa
     1501 ttccaatcgg tgctgaggat aattttaaag gcgtaatcga tcttgtaact atgaaagctt
     1561 tagtttggga agatgatact aagccaacgg attatgtaga aaaagaaatt ccagctgaac
     1621 ttaaagaaaa ggcagaagaa tatcgcacaa aaatgataga agcagtttct gaaacttcag
     1681 atgagttgat ggaaaaatat ttaggcggag aagaattaag ccttgaagag attaaaacag
     1741 ggattaaagc aggatgttta agtctttcta tcgttcctat gctttgcggt acagcgttta
     1801 aaaataaagg ggttcaacct ttacttgatg ctgttgtggc ttatttacca gctcctgatg
     1861 aagtggcaaa tatcaagggt gaatatgaag atggcacaga agtttctgta aaatcaactg
     1921 atgatggcga gtttgcagga cttgcattta aaattatgac agatccattt gtaggacaac
     1981 ttactttcgt gcgtgtttat cgcggttgtt tagaaagtgg ttcttatgct tataactcaa
     2041 ctaaagataa aaaagaaaga attggtcgtt tgttaaaaat gcactctaac aaaagagaag
     2101 agattaaagt gctttacgca ggcgaaattg gtgctgttgt aggacttaaa gatactttaa
     2161 caggggatac tcttgcaagt gaaaaagata aggtaatcct tgaaagaatg gattttccag
     2221 atccagttat ttctgttgca gttgagccaa aaactaaagc agatcaagaa aaaatgtcta
     2281 ttgctttaaa taaattagca caagaagatc caagttttag agtttctaca gatgaagaaa
     2341 atggccaaac tatcatttca ggtatgggtg agttgcacct tgaaattatc gttgatagaa
     2401 tgcttcgtga atttaaagtt gaagctgaag taggtcaacc acaagttgct tatcgcgaaa
     2461 ctattagaaa aactgttgaa caagaataca aatacgctaa acaatcaggt ggtcgtggtc
     2521 agtatggaca tgtattctta cgccttgaac cacttgagcc aggtagtgga tatgaatttg
     2581 ttaatgatat caaaggtgga gtaattccaa aagaatacat tcctgcagtt gataaaggtg
     2641 ttcaagaagc attacaaaat ggtgttttag caggttatcc tgtggaagat gttaaagtaa
     2701 ctgtttatga tggaagttat cacgaggtgg attcatctga gatggcgttt aaacttgctg
     2761 cttctatggg ctttaaagaa ggtgctagaa aagcaggtgc tgtgatctta gagcctatga
     2821 tgaaagttga agtagaaact cccgaagatt atatgggtga tgttattgga gatcttaaca
     2881 aacgccgtgg tcaagtaaat agcatggatg agcgtggtgg aaataaaatc atcacagcat
     2941 tttgtccttt ggctgaaatg tttggttatt ctactgatct tagaagtcaa actcaaggtc
     3001 gtgcgactta ttctatggaa tttgatcact atgatgaagt tcctaaaaat gttgcagatg
     3061 aaatcatcaa aaaaagaaac ggttaaattt ttagcgggat ttttcccgct ttctgtcctc
     3121 gtagctcagc aggatagagc gcaaaattcc taattttgag gccgtgagtt cgaatctcgc
     3181 cgtggacacc attttatggg gtgttattat gataaaaatt gcttttttta taacttttgt
     3241 aatttctttt ttggcagcac aaagcccagt aaattttaaa gaagataata atataacaaa
     3301 agaacgaaat atatttaaag aacaatctcc aaaacgcatt aaaattccaa cgcattaaaa
     3361 tatatgtcag atctgattac gctagcacaa ttatcacaag ggtatcgtta caatagtgat
     3421 tctttaattt tagctgattt tattttaaaa caaggaatta aaggcgctgt ttttgatgta
     3481 ggtgcgggct gtggtatcat aggtatttta cttaaaaaaa atattgcaaa tttaagttta
     3541 tctttgattg atattcaaaa agaaaatata aaattgattg aaaaaaattt aaaatccaac
     3601 aaaatacaag gcgatatttt tcatgatgat tttaatcaat ttcaaatcat aaaaaaattt
     3661 gacttcatag tctgcaatcc tccattttat agacaaggag cttacaagag tgaagatcag
     3721 cataaagcta taagtaaatt tcaggaattt ttacccttgc atagcttttt agctaaaaca
     3781 aattctatgc ttaagccaaa tggtactttg tatttttgct atgaagcttt agctttagat
     3841 gaaatttgtt ttattttaaa agatatgaaa atgaaaataa caaagctttg ctttgtacat
     3901 acacatcaaa acaaaaaagc aagacttgtt ttgatacagg taaaaaaagg ttcaaaatcg
     3961 ccttgtgaga ttttacctcc tttttttgta tatgaaaatg aaattttaag caaacaaatg
     4021 caagaaattc acttaagatt taggttaaaa agttatgata tttgataaaa atttttctta
     4081 tgcttttgat gaaaatgctt gtgagaaatg cggtggaaag tgttgcactg gagaaagtgg
     4141 caatattttt gcgagcaagg aagaattaga agcattaaga aagcatttaa atttagaaag
     4201 caaagaattt gctgaaaaat acttgagaaa agtgggcttt aaaatgagtt ttaaggaggt
     4261 cgaatgtgaa gatggctttg cttgcatttt ttttgatact caaaaaagaa attgtagtat
     4321 ctacgatttt cgtccaaaac aatgcagaac ttttccattt tgggaatatt ttaaaacaca
     4381 tcaaaaggaa ttagaaaaag aatgtatagg tatttgttat ttgtcttagc agcctttttt
     4441 ttggcagctt gtggaagttc aaaaatcaat gttgtttatc ctgattatac aaaatataaa
     4501 agcaatgatt ttgatttaag ggttatgaag gcttataatt atgagtatta taaacaatac
     4561 aaagaagcca gagatgaatt tttaagtctt tatcaagatt ataataatac taatttttta
     4621 gaaaatgcat ttttactttc tttagcaaac aatcttgaca agcaagcaga gttagataat
     4681 ctagcaaagc cttatttaaa tcaaaatgac aatcttaagc gacttagtgc tctttatgct
     4741 ttaaattcaa atgatatcaa caatgctcaa aaacttatga aagagctttt aacaaaaaag
     4801 gatagtgatc ctagaaattt agagctttac ggagatattt tggttaaaaa aaatgattta
     4861 aaaaatgcta caaaatacta tagatctgct tataatcaag tgcaaaatga agaaatttta
     4921 tttaaactca taggaattta tgcgattttg aatgatactt taaatattaa aaatgtttta
     4981 gaattttcaa gaaaaaccaa tggttgtact ctcaaaactt gcgtcttgct tgctaaaatt
     5041 tattttgatg aaaaaaatat cgaagcttta aaaagtatat ataaagagct ttatcaactt
     5101 accaaaaata aaagttttgt attggcttta gttgagcttt taaattctca aggcaaaaca
     5161 gaagaagctt taaaaatttc tttgcagtat gatttagatg atgacattaa actcgctttg
     5221 tatcagaatt taaaacgctt tgatgatgct aaaaaaatga gtttagctct ttatcataaa
     5281 acaaaaaata aagaatatct tctacgagcg gcagtttttg aatttgaagc tgcaaatgaa
     5341 gctaaaaaaa tcactccaaa agtaattgat tctgtaaaag aaaaattcga acaggctatc
     5401 gataaagata gcaatgcttt gtatttaaac tactatggat atttgcttat agattatgat
     5461 ttagatgtta aaaaaggtat agagcttgtg aaacttgcct tagaaaaaga tccacagaat
     5521 ttgtattatt tagattcttt agcttggggg tattataaac taggcgattg taagcaagca
     5581 tgggaaattt taaaacaaac attagatgat aaagaatttg caaattctga tgagagcaaa
     5641 gctcatataa aagcgataaa ggcgtgtata aaaccatgat attggataaa atttttgaaa
     5701 aaacaaaaga agatttaaaa gaacgcaaac taaaacttcc ttatgatatg ttagggcgtt
     5761 ctttagcttc aaatcctttc tttccaaaag atgtgattaa ggctttaaaa agagtagaaa
     5821 aagaagttaa aatcatagca gaagtaaaaa aagcaagccc tagcaaggga gtcattagag
     5881 aagactttga tcctttgagt atcgctttaa attatgagaa gaacaaagct gcggcgattt
     5941 ctgttttaac tgagccgcat ttttttaaag gttctttaga atacttaagt cttatacgcc
     6001 gttatacgca aattccttta cttagaaaag attttatctt tgatgagtat caaattttag
     6061 aagctttggt ttatggggcg gattttgtat tattaatcgc taaaatgcta agcatgaaag
     6121 agcttaaaaa actgcttgag tttgcaagac atttaggtct tgaggctttg gttgaaatcc
     6181 atgataaaga ggatttgagt aaggctattt ttgctggagc ggatattatc ggtatcaatc
     6241 atcgtaattt agaggatttt actatggata tgagtttgtg cgaaaaactt atcccacaaa
     6301 tcccaaattc aaaaatcatc atcgcagaaa gtggtttaga aaataaagaa tttttagagc
     6361 atttgcaaaa tttaggcgtt gatgcttttt taatcggcga atattttatg cgcgaaaaag
     6421 atgaaggaaa ggctttaaaa gctttgcttt aaggagggaa aatgcagtat ttgtatgcac
     6481 catggcggag tgagtatttt gaaaaagtaa aaagcatttg tccattttgt gattgtgcta
     6541 ataagatcaa aagcgatgaa gaattaggcg tgatttttag agcaaagcat tgttttggag
     6601 tgatgaaccg ctatccttat tctgcagggc attttatggt gattccttat atacatgaag
     6661 agcatataga aaatttaagt gatgaaattt ggcaagaaat gagttatttt gtgcgtttgg
     6721 gggtaaaaat tttaaaagag caaattcatg caaatggagt gaatatcggt atgaatttaa
     6781 gcaaggatgc aggagctggc atagcttttc attgtcatta tcatctagtg ccacgctggt
     6841 caggagatac aaattttatc acaaccatag gagaaactag ggtttgtggc actaatatag
     6901 agcaagttta tcaaaaactt gttttggctt ttaaaaatgc tcagtgaagt tgaatttgta
     6961 gagtttcaaa aagaaaattt ctctctttta atcgatgcaa gaagccctag agaatttttg
     7021 cattctcact tgataggagc tttaaatttt tatgcactca atgatgaaga atatcaagaa
     7081 ataggaacaa tttataagaa aaatcaagct ttagctaagg ctatgggtgc gagttatatt
     7141 tgtcaaaata ccactaagca tatattagaa atcactcaaa attttcgcat aggagaaaag
     7201 gtggggattt attgttctcg tgggggtttg cgttcaaagt ctatcgcagt gattttaagt
     7261 gagcttggct ttagggtggt gcgtttaaaa ggtgggttta aagcttatag aacttttgta
     7321 acgcattatt tcgaaaatga aataaatttt gatttttttg ctctttgtgg taatacaggt
     7381 tgtggaaaaa cagagctttt agaacaactc ccacaagcta taaatttaga aaaaatggca
     7441 aatcatttag gctcgtcttt tggtgatatt ttaggaaaac aacctacgca aaaagctttt
     7501 gaagcagaac tttttcacaa tattcaaaat ttagaaaatt ttgctttcat agaaagcgaa
     7561 agtcgcaaaa taggggatat tatcttacct ttgaaatttt atgaaaaaat gcaaaaggct
     7621 tttaaaattt attgtttttg ttctttggaa aatcgcgtta gaagaataca aaaaatttat
     7681 caagaaaaaa tgactccttt gaaatttcaa caatgtgtgc aaaaaatcag tccttatatc
     7741 agcttaaatt tacgccaaga tttgcttcaa agttatgaga gaaaagaatg gcaaaagctt
     7801 attgttatgc ttttggagta ttatgataaa acttataaaa aaccagataa gattgatctt
     7861 gagttaaata ctgatgatat tttaaaagct aaagaagagc ttttagatca ttttaaagta
     7921 caattacttt tttaatatca gataatttta ttaaataatc aaattttttc ttcatcatct
     7981 tgtaataatc ctttttatct ttgttgtttt ttaacttggc tcaaattttt attttaatgc
     8041 tagtaaattt gaattataga gaagtaaaat
//
LOCUS       DAPIWJ010000070         7962 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.071, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000070 DAPIWJ010000000
VERSION     DAPIWJ010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7962)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7962)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7962
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.071"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..1067
                     /locus_tag="RJ259_001317"
     CDS             <1..1067
                     /locus_tag="RJ259_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HDV7367014.1"
                     /translation="HFYIHIPFCESKCNYCAFTSLKKNDYEKAYFKALKEDIVFQLKQ
                     FNIQSNQIKTLFIGGGTPSCVNAYNYEDIFKILYPLLDKNVEISCEANPNSATLNWLK
                     NMKNLGVNRISFGVQSFHPKKLHFLGRIHNQEMIIKTLENANKVGFKNINLDLIYDTK
                     LDNKKMLEFELLHLKQIKDLITHLSAYNLTIESNTAFAKKEHFKKNAPNLMKFFIKQL
                     LELDFFQYEISNFSKTKAQICKHNLAYWQGKNYLACGLSAVGFYENKRFYTAKNLKNY
                     IENPTFRSIEQLSSKDLNLEHLFLGLRSIVGIDETKLNQWQKNKINILLKEKKLFYKN
                     KRYFNPNFLISDELALYLSS"
     gene            1125..1541
                     /gene="tatB"
                     /locus_tag="RJ259_001318"
     CDS             1125..1541
                     /gene="tatB"
                     /locus_tag="RJ259_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HDV7367015.1"
                     /translation="MSFGEIIVILVVAILVLGPDKLPEAIVQIAKILKAVKRNIDDAK
                     SSIEKEIRINDLKEEAKKYKDEFSSTNENIRKKLSFEEFDDLKRDILDKTKVDLTFDS
                     RDDKVKNNLSGQNLNTEEKPNLSKLETQDKNGKINV"
     gene            1534..2271
                     /gene="tatC"
                     /locus_tag="RJ259_001319"
     CDS             1534..2271
                     /gene="tatC"
                     /locus_tag="RJ259_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HDV7367016.1"
                     /translation="MFEELRPHLIELRKRLFISVACIVVMFIVCFTLRSYILDILKAP
                     LIAVLPEVAKHVNVIEVQEALFTAMKVSFFAAFIFSLPVIFWQFWKFVAPGLYDNEKR
                     LVVPFVSFASIMFAFGACFCYFVVVPLAFKFLINFGLNEDFNPVITIGTYVDFFTKVV
                     VAFGLAFEMPVIAFFFAKIGLIDDSFLKRHFRIAVLVIFVFSAFMTPPDVLSQFLMAG
                     PLCGLYGLSILIVQKVNPAPKDKESDE"
     gene            2264..3292
                     /gene="queA"
                     /locus_tag="RJ259_001320"
     CDS             2264..3292
                     /gene="queA"
                     /locus_tag="RJ259_001320"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HDV7367017.1"
                     /translation="MNKDLLLSSYDYTLANELIANYPTNPKEDARLLVFDRKNKEIFH
                     TTFKNLQDFLPNCAIFFNDTKVIKARIYGNKASGGKIELFLHQPFLNSHNPLFLAQIK
                     GRIKKDEILYFKEDLKVRVVELLNDGLRKVQFFQNDKTLDTSNLYNLLDKIGHIPLPP
                     YIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMLENLRKKHEIYHLTLHVGAG
                     TFKSVECENIQEHKMHSEFFNIPQQACEIIDSKQAILGVGTTVTRTIEYYTRTKTKNG
                     FCDLFLHPQNPPIRQNHLLTNFHLPKSTLIMLVSAFIGREQCLKLYELAIKEKYRFYS
                     YGDAMLIL"
     gene            complement(3281..4246)
                     /gene="lpxD"
                     /locus_tag="RJ259_001321"
     CDS             complement(3281..4246)
                     /gene="lpxD"
                     /locus_tag="RJ259_001321"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HDV7367018.1"
                     /translation="MKLSEIAEFLSLEYKGEDIEISALNSLLKANFTELTYCDGEKNT
                     KDIPHTGAAAILVSKEYENLVPKDTKALITQSPHLSFAFLSKLFAKPLISTAKEKVQN
                     IAKSARIMPNVYIGDNVNIGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKK
                     CHLLANCVIGSDGFGYAHNKNGEHYKIYHNGNVVLEDFVEVGACTTIDRAVFDSTIIK
                     AGTKVDNLVQIGHNCNIGQNCIIVAQTGISGSSELGRNVIMGGQSATSGHLKIGDFST
                     IAARGGVSKNLEGGRVYGGFPIMLQKDWLKLQAKIAINFKEKSQD"
     gene            complement(4243..4707)
                     /gene="ilvN"
                     /locus_tag="RJ259_001322"
     CDS             complement(4243..4707)
                     /gene="ilvN"
                     /locus_tag="RJ259_001322"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HDV7367019.1"
                     /translation="MRRVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLENKEFS
                     RINIVTSGNERTFEQIVKQLHKLIPTYKVIESEEFIDKEMALVKIPLNENLGGLDAVL
                     KAYNGTIANSNENFLFLMVADDANRIDNFLKTIKKYNPSDIVRSGSVLMEIK"
     gene            complement(4704..6404)
                     /locus_tag="RJ259_001323"
     CDS             complement(4704..6404)
                     /locus_tag="RJ259_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HDV7367020.1"
                     /translation="MKELSGSAMICEALKEENVKIVFGYPGGAALNIYDEIYNQKYFK
                     HILVRHEQAALHAADAYARMSGEVGVAIVTSGPGFTNTITGLATAYSDSIPLVLISGQ
                     VANSLIGTDAFQEIDAVGISRPCVKHNYLVTCIEEFPRILKEAFYIARSGRPGPVHID
                     VPKDVSATLGLWEYSKEISMKTYKPVYKGNSKQIKKFAELLKEAKRPLFYLGGGCISS
                     NASEQIRELIKFTKIPAVETLMALGTLRSDDVFNLKMAGMHGSYAANMALSECDLLVS
                     VGARFDDRITGKTSEFAKHATIVHVDIDPSSISKIINAHYPIVGDIKEVLKELLEELK
                     KENFNTTFKEWHETLKRYNELYPLSYEDSNEILKPQWVIEECAKMAPDARIITDVGQH
                     QMWVAQFYPFNYPRQLATSGGQGTMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQ
                     ELMTAYEYGIKAINIILNNAFLGMVRQWQSMFYKEHFSQTDLSTQPDFIKIAQGFGCE
                     GYEISNKEEFIQAFSQALKSDKTSLLNVKIDRFEDVLPMVPAGGAIYNMILPKAKDRQ
                     "
     gene            complement(6422..6865)
                     /locus_tag="RJ259_001324"
     CDS             complement(6422..6865)
                     /locus_tag="RJ259_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HDV7367021.1"
                     /translation="MTLKEQILNDIKEAMKQKDDFKRDSLRTLNAAFKQIEVDERIEL
                     DNERIYKIIASEIKKRKDAIELYLKANREDLAQKEQNEISLFEIYLPKQLSDEELTLA
                     LKQLIEELGVSSLKEQGLVMKEAKIKLGASVDGKRLNLALKELLQ"
     gene            complement(6877..7896)
                     /locus_tag="RJ259_001325"
     CDS             complement(6877..7896)
                     /locus_tag="RJ259_001325"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3,4-dihydroxy-2-butanone
                     4-phosphate synthase/GTP cyclohydrolase II"
                     /protein_id="HDV7367022.1"
                     /translation="MKFVSVEQAIKDLQAGKMLVMVDAEDRENEGDLIFPAQFSTQEK
                     VNFMIKEARGVVCVALDETLAKKFELPLMVPKNTSNHETAFTITVDAKDATTGVSAYE
                     RNMTIQIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCKLAGLKGACV
                     ICEIVKDNGDMARREDLEIFCQKHDLNMIAVSDLIEYRLKHESLIKLEEKSQSVLAGF
                     KAEKFIFSDHNQTQHIAFCFKDIKKCENVKFHISGSDFELLTSDKFSKLLEQIKFLSE
                     NGGVIVFMQGEKSSTTQYKNYGIGAQILRYFGIEEIKLLSQSCDKDYIGLEGFGLNLK
                     ACNFN"
BASE COUNT         2679 a         1437 c         1064 g         2782 t
ORIGIN      
        1 tgcattttta tatccatatt ccattttgtg aaagcaaatg taattattgc gcttttacaa
       61 gtttgaaaaa aaatgattat gaaaaagcct attttaaggc tttaaaagaa gatattgttt
      121 ttcaattaaa acaatttaac attcaatcaa atcaaattaa aaccttattc ataggcggag
      181 gaacaccaag ttgtgttaat gcgtataatt atgaagatat ttttaaaatt ttatatccct
      241 tactagataa aaatgtagaa atttcatgcg aagctaatcc caactcagca acattaaatt
      301 ggcttaaaaa tatgaaaaat ctaggagtta atcgcatttc ttttggagtt caaagttttc
      361 atcctaaaaa acttcacttt cttggaagaa ttcacaatca agaaatgatt atcaaaacat
      421 tagaaaacgc aaataaagta ggttttaaaa atatcaattt agatcttatt tatgatacga
      481 aattagacaa taaaaaaatg cttgaatttg aactcttaca cttaaaacaa atcaaggatt
      541 taatcacaca ccttagtgct tataatttaa ccatagaatc aaacacagcc tttgctaaaa
      601 aagaacattt caaaaaaaat gctcctaatt taatgaaatt tttcatcaaa caacttctag
      661 agcttgactt ttttcaatat gaaatcagta atttttcaaa aaccaaagcc caaatttgca
      721 aacataatct tgcttattgg caaggaaaaa actacctagc ttgtggatta agtgcagtag
      781 gattttatga aaataagcgt ttttatacag caaaaaattt aaaaaattac atagaaaatc
      841 ctacttttag atctatagag caactaagtt ccaaagactt gaatttagag cacctatttt
      901 taggacttag aagtatagta gggattgatg aaacaaaact caatcaatgg caaaaaaaca
      961 aaataaatat attattaaaa gaaaaaaaac ttttttacaa aaataaaaga tattttaatc
     1021 ctaattttct cattagcgat gaacttgctt tatatctctc atcttaaatt taagtttttt
     1081 aagtaaaata tttattaaaa tatcaaatca aagagtaatg attaatgagt tttggtgaaa
     1141 ttatagttat tttagttgta gcgattttag tcttaggacc tgataaactt ccagaagcta
     1201 tagtacaaat agcaaaaatt ctaaaggctg taaaacgcaa catagatgat gcaaaatcaa
     1261 gcatagaaaa agaaatacgc atcaatgact taaaagaaga agctaagaaa tacaaagatg
     1321 aattttcaag cactaatgaa aatatacgca aaaaactcag ctttgaagaa tttgatgacc
     1381 ttaagagaga tattttagat aaaacaaagg tagatttaac ctttgatagc agagatgata
     1441 aagtaaaaaa taaccttagc ggacaaaatt taaatacaga agaaaaacca aatcttagca
     1501 aattagaaac acaagataaa aacggaaaaa taaatgtttg aagaattaag acctcattta
     1561 atagaactta gaaaacgcct ttttataagc gttgcttgca ttgtagttat gtttattgta
     1621 tgttttactc tacgaagcta tatcttagat attctaaaag ctccacttat agctgtttta
     1681 cccgaagtag ccaaacatgt aaatgtaatt gaagtacaag aagccttatt taccgcaatg
     1741 aaggttagtt tttttgcagc ctttatcttt tctctacctg taattttttg gcaattttgg
     1801 aaatttgtag ctccaggact ttatgataat gaaaaacgcc ttgtggtgcc ttttgttagc
     1861 tttgcgagca ttatgtttgc ctttggggct tgtttttgct attttgttgt agtgcctttg
     1921 gcttttaaat ttttgattaa ttttggttta aatgaagatt ttaatcctgt gattaccata
     1981 ggaacttatg tagatttttt taccaaagtt gttgtggctt ttggcttagc ttttgaaatg
     2041 cctgtaattg cctttttctt tgctaaaatc ggacttatag atgatagttt tttaaaacgc
     2101 cattttcgca tagctgtttt agttattttt gttttttcag cctttatgac tccacctgat
     2161 gttttatctc aatttttaat ggcaggacca ctttgcggac tttatggact ttctatttta
     2221 attgttcaaa aggtaaatcc tgctccaaaa gataaagaaa gtgatgaata aagacttact
     2281 tctttcaagc tatgattaca ctctagctaa tgaactcata gccaactatc ctacaaatcc
     2341 aaaagaagat gctaggcttt tggtttttga tcgcaaaaac aaagaaattt ttcatactac
     2401 ttttaaaaat ttacaagact ttttacccaa ctgcgcgatt tttttcaatg ataccaaagt
     2461 tattaaagca agaatttatg gcaataaagc aagcggagga aaaatagagc ttttcttgca
     2521 tcaacctttt ttaaattctc acaatccgct ttttctagct caaattaaag ggcgcattaa
     2581 aaaagatgaa atcttatatt ttaaagagga tttaaaagta cgcgttgtag aacttttaaa
     2641 tgatggtctt cgaaaagttc aattttttca aaatgataaa accttagaca cctcaaatct
     2701 ttacaacctg cttgacaaga taggacatat acccttgcct ccttatatta aaagggagga
     2761 tgaaaaaagt gatttgaaag attatcaaag tatctttgca aaaaatttag gcgcagtggc
     2821 tgctccgact gcaagtttac attttagtga gactatgctt gaaaatttaa gaaaaaaaca
     2881 cgaaatttat catttaacct tgcatgtagg agctggaacc tttaaaagcg tggaatgtga
     2941 aaatatacaa gagcataaaa tgcatagcga attttttaat attccgcagc aagcatgtga
     3001 aattatagat tctaaacaag ctattttagg cgtaggaaca acggtaacaa gaaccataga
     3061 atattataca agaactaaaa caaaaaatgg tttttgtgat ctttttttac acccgcaaaa
     3121 tccacctata agacaaaatc atcttttaac caattttcat ttaccaaaat ctactcttat
     3181 catgctagtt tcagctttta tcggtagaga acagtgttta aaactttatg aactcgccat
     3241 aaaagaaaaa tatcgctttt actcttatgg cgatgcgatg ctaatcttgt gatttttctt
     3301 taaaatttat tgctatttta gcttgaagtt ttagccaatc tttttgaagc atgataggaa
     3361 aacctccata aacacgcccg ccttctaaat ttttactcac accgcctctt gcagctatag
     3421 tgctaaaatc gcctattttt aaatgtccac tcgttgcact ttgaccaccc ataataacat
     3481 tgcgtcctaa ctcacttgaa cctgaaattc cagtttgtgc cacaatgata caattttgac
     3541 ctatattgca attatgtccg atttgaacta gattatctac cttagtacct gctttgataa
     3601 tagtactatc aaaaactgct ctatctatag ttgtacaagc ccccacttct acaaaatctt
     3661 ctaaaaccac gttgccatta tgataaattt tataatgttc gccgttttta ttgtgcgcat
     3721 aaccaaaacc gtcacttcct attacacaat tagcaagcag atgacatttt ttaccgattt
     3781 tagtatcatt ataaatcact acattaggat gaataatact ctcatcacca atgctgacat
     3841 tatcgcctat ataagctcct gccataatga ttacattttc accgatattt acattatcac
     3901 ctatataaac attaggcatg attcttgcgc tttttgcgat attttgtact ttttctttag
     3961 ctgtgcttat caaaggttta gcaaaaagct tgcttaaaaa agcaaaactc aaatgtggac
     4021 tttgagtaat caaagcttta gtatctttag gtactaaatt ttcatattct ttagatacta
     4081 aaatagcagc agctcctgtg tgaggtatat ctttggtatt tttctcacca tcacaataag
     4141 taagctctgt aaaatttgct ttcaataaag aatttaaagc actgatttct atatcctcgc
     4201 ctttatattc caagcttaaa aattctgcta tttcacttaa tttcatttaa tctccatcaa
     4261 aacagatcca ctgcgaacta tatcactagg attgtatttt ttaattgttt ttaaaaaatt
     4321 atcaatgcga tttgcatcat cagcaaccat taaaaacaaa aaattctcat tgctatttgc
     4381 aatagtacca ttataagctt tcaaaacggc atcaagtcca cctaaatttt catttaaagg
     4441 aattttcact aaagccattt ctttgtcaat aaattcttca ctttctatca ctttataagt
     4501 aggaatgagc ttatgaagtt gtttgactat ctgctcaaaa gttctttcat ttcctgaagt
     4561 gactatatta atacgagaaa attctttatt ttccaaaggt gctactgtaa gcgagtcaat
     4621 attataacct cttcctgaaa aaagtcctac tatacgagat aaaaccccat gctcatttaa
     4681 aacaattacc gataaaaccc ttctcattgt ctatcctttg cctttggtaa aatcatatta
     4741 taaatcgcac ctcctgcagg caccataggt aaaacatctt caaagcgatc aatttttaca
     4801 tttaaaagag aggttttatc actttttaaa gcttggctaa aagcttgaat gaattcttct
     4861 ttgtttgaaa tttcataacc ttcacaacca aaaccttgag ctattttgat aaaatcaggc
     4921 tgagtgctta aatcagtttg tgaaaaatgc tctttataaa acatactttg ccattgtctt
     4981 accataccta aaaaggcatt atttaaaata atatttatag cttttatacc atactcataa
     5041 gcagtcataa gctcttggat attcattaaa accgatccat cacctacgaa attaatcacc
     5101 acttcttcac ccacagcaag ctttgcaccc aaagcagcag gtaaagaata tcccatagtt
     5161 ccttgccctc cacttgttgc aagttgtctt ggataattaa aaggataaaa ctgcgctacc
     5221 cacatttgat gctgacccac atcggtaata atccttgcat ctggagccat tttcgcacat
     5281 tcttcaatca cccattgcgg ttttaaaatc tcattgctat cttcataaga aagcggataa
     5341 agttcattat aacgctttaa agtttcatgc cattctttaa aagttgtgtt gaaattttcc
     5401 tttttaagct cttctaaaag ctctttaaga acttctttaa tatctcctac tataggataa
     5461 tgcgcattga taatctttga aatagaacta ggatcaatat caacatgaac tatagtcgca
     5521 tgtttagcaa attcacttgt ttttcctgta atcctatcat caaatctcgc tcctacactc
     5581 acaagcaaat cacactcact taaagccata ttagcagcat agcttccatg catgcctgcc
     5641 attttaagat taaaaacatc atcacttctt aaagttccaa gcgccatcaa agtttcaact
     5701 gctggaattt ttgtaaattt tataagctct ctgatttgct cgcttgcatt agaactgatg
     5761 caacctccac ctaagtaaaa caaaggtctt tttgcttctt ttaaaagctc tgcaaatttt
     5821 ttaatttgct ttgagttacc cttataaacg ggcttataag tcttcatgga aatttcttta
     5881 gagtattccc aaagtcccaa agttgcactt acgtcttttg gcacatctat atgcacaggc
     5941 ccaggtctac cacttcttgc tatataaaaa gcctctttta aaatgcgtgg aaactcttct
     6001 atacaagtaa ctaaataatt atgctttaca caaggtcttg aaatgcctac tgcatcaatt
     6061 tcttgaaaag catctgtacc aataagagaa tttgccacct gccctgaaat caacaccaaa
     6121 gggatagaat cgctataagc cgtagctaga cctgtaatag tatttgtaaa acctggtccg
     6181 cttgtaacta tagctacgcc cacttctccg ctcattcttg cgtaagcatc agcagcatgc
     6241 aaagccgctt gttcatgacg cactaaaata tgtttaaaat acttttgatt gtaaatttca
     6301 tcataaatat taagcgcagc gcctccagga taaccaaaaa caattttaac attttcttct
     6361 tttaaagcct cgcaaatcat tgccgaaccg cttaactctt tcataataac actccaaaaa
     6421 attattgtaa aagctcttta agtgctaaat taagtctttt gccatcaaca ctcgcaccta
     6481 attttatttt agcttctttc attaccaaac cttgttcttt tagtgaactt acgcccaatt
     6541 cttctataag ttgttttaag gctaaagtta actcctcatc acttagttgt ttaggcagat
     6601 aaatttcaaa aagacttatt tcattttgtt ctttttgtgc taaatcttca cgatttgcct
     6661 taagataaag ttcgattgcg tctttgcgtt ttttgatttc acttgcaatg attttataaa
     6721 ttctttcatt atccaactct attctttcat ccacttctat ttgcttaaaa gctgcattta
     6781 gagttcttaa actatctctt ttaaaatcat ctttttgttt cattgcctct ttgatatcgt
     6841 ttaaaatttg ttcttttaaa gtcatttttt tcctttttag ttaaaattac aagctttaag
     6901 atttaaacca aaaccttcta aacctatata gtctttatca caactttgag ataaaagttt
     6961 aatttcttct ataccaaaat atcttaaaat ctgtgctcct ataccatagt ttttgtattg
     7021 agtagtactg gatttttctc cttgcatgaa aactataacg ccaccatttt cactaagaaa
     7081 tttgatttgc tctaaaagtt ttgaaaattt atctgaagtt aaaagctcaa aatcactacc
     7141 actgatatga aatttaacat tttcacattt tttgatatct ttaaagcaaa aagctatgtg
     7201 ttgggtttga ttatgatcac taaagataaa tttttctgct ttaaagcctg ctaaaacact
     7261 ttgacttttt tcttcaagct taataaggct ttcatgtttt aggcgatatt ctataagatc
     7321 gcttacggct atcatattta aatcatgttt ttggcaaaaa atttctagat cttctcttct
     7381 tgccatatct ccattatctt ttacaatttc acaaatcaca caagcacctt ttaatcctgc
     7441 taatttacaa agatcaaccg tgccttctgt atgacctgtg cgttctaaaa ccccaccttt
     7501 ttttgcgatt aaaggattga tatgtcctgg tcttacaaaa tcactcgctt tagcattatc
     7561 atcggcaaaa atttgtatag tcatatttct ttcataggcg ctaactcccg ttgtagcatc
     7621 ttttgcatct acggttatag taaaagcagt ttcgtggttt gaagtatttt taggcaccat
     7681 taaaggaagt tcaaattttt ttgccaaagt ttcatctaag gctacacaaa ccacaccacg
     7741 agcttctttt atcatgaaat ttactttttc ttgagtgcta aattgcgcag gaaagattaa
     7801 atcgccttca ttttctctat cttctgcatc taccataaca agcatttttc ctgcttgtaa
     7861 atccttaatc gcttgttcta cgctaacaaa tttcattttt atttccttaa aatttttaaa
     7921 attataactt aaattgcttg acaaataaat taaaattcat ta
//
LOCUS       DAPIWJ010000071         7924 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.072, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000071 DAPIWJ010000000
VERSION     DAPIWJ010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7924)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7924)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7924
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.072"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            73..3585
                     /locus_tag="RJ259_001326"
     CDS             73..3585
                     /locus_tag="RJ259_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[ACP]--phospholipid O-acyltransferase"
                     /protein_id="HDV7367023.1"
                     /translation="MQKKSFLKIYGLIPFLLIAFINAFVDLGHKIIIQNTIYKAYEGS
                     EQLFLNAIVNALILLPFILMLSPSGFLADKYPKNIVMKISAIFNVILTLIICICYYSG
                     AFWMAFIFTFIMGAQAAIYSPSKYGFIKELVGKDFLAMGNGVINAVSIVAILAGMALF
                     SLSFESLYSSMYNQTDEILKEVAPLGIVLILFSCIEVFFAWRLPKLKQTNKDLVFNKK
                     DYIRGKLLINNLKLVFKNKTIWLCIIGISFFWAISQLYLVSFPVFAKNELFIENTFYV
                     QISLAFSGIGVILGSLVAGKFSKNYIELGFIPLGALGMFLMAFLMPYFISLLSYSFLF
                     FFFGFCGALFIIPLNTLIQFHAKENELGQILAGNNFFQNIAMLGFLLLATLFVKFEIN
                     VIYLFYFIALVTFIGSFYILLKLPFSLVRILLSIAFLQRYRLLVEGFENIPEKGGALL
                     LGNHISFIDWAVVQMAIPRKIYFVMERSIYSKWYIKIFLDKFGIIPVSSTGSKTSLEL
                     IAKHIKEGNLVCLFPEGTLSRHGQLNEFKAGFELACECLSEDDGKIIPFYIRGLWGSA
                     FSRSDEEFSARNRTLNKRKIAIAFGKAMPLHSKKDEVKAKVFELSFMAWKSQCEAMHT
                     IARAWIDTAKKNLNQIAIIDTLAGDISYRKMLTLSLFLNFFIKRKSKELNINLQRGSY
                     APKEEAIGILLPASFASSLTNLSVLIAEKIAVNLNFTAGEKALKAAIKNTQISQIYTS
                     KTFLEKLANKGINLNFDTNIHLIYFEDIVEDFKMQKTKIFSMMLAVSIIPSFILKSIF
                     TPSKNNLAIAAILFSSGSEGSPKGVMLNNRNILSNIAQISDVLCTRNNDVILSSLPPF
                     HAFGLTVTTFLPLLEGIKSITFSDPTDALGVAKAVAKNNVTIMCGTSTFLGIYARNKK
                     LDALMFESLRIVVSGAEKLKNEVRTTFEMKFKKSIFEGYGATETTPVASVNLPNHFDV
                     DYWLIHRANKEGSVGMPLPGTAVRIVDPNNYENLKTNEDGLILIGGHQVMVGYLNDKE
                     KTDEVVKEIDGIRWYNTGDKGHLDEDGFLYIVDRYSRFAKIGGEMISLGAIEEEIAKF
                     IDTEVVKFCATSLEDEKKGEQIVLLIECNNEIFEGVCEAIKNSNIPTLFKPRYYFQIE
                     KIPLLGSGKVDLKKVKELAKNLAI"
     gene            complement(3593..4504)
                     /locus_tag="RJ259_001327"
     CDS             complement(3593..4504)
                     /locus_tag="RJ259_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDV7367024.1"
                     /translation="MFVFIPLFTIFILLAGGYFAKRIGVLKQKQARTFLDFAIIFALP
                     CLIFDKAYHLNFDFSLIIFIFIGLFSCILAAFFAILIGKVFHFSKVTLVSMFLLSCFG
                     NTIFVGMPIVAGIFNDPQFSAEVIFYDALATTLPISLFGPFILSLGNGEKVSLFANVK
                     KILSFPPFLALLFGFLCKLITLPEFIFSPIRLFGASATPVALFAIGLGLGFMAIKTSY
                     KPTIVVIFAKMILAPLFFVFCLKIFNLELKDSTIVAIIESAAPTMTLAGAMVMKAKLD
                     SNLAVSAVAFGVLFAFVSMPILIWTLL"
     gene            complement(4701..4786)
                     /locus_tag="RJ259_001328"
     tRNA            complement(4701..4786)
                     /locus_tag="RJ259_001328"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4750..4752),aa:Leu,seq:gag)
     gene            complement(4821..5159)
                     /locus_tag="RJ259_001329"
     CDS             complement(4821..5159)
                     /locus_tag="RJ259_001329"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HDV7367025.1"
                     /translation="MKKVLFLLLACTAVAFAAETNAPVEQEAINVWIKAFSVLAAGLG
                     LGVAALGGAIGMGNTAAATIAGTARNPGLGPKLMTTMFIALAMIEAQVIYALVIALIA
                     LYANPFIVLQ"
     gene            5392..6726
                     /locus_tag="RJ259_001330"
     CDS             5392..6726
                     /locus_tag="RJ259_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDV7367026.1"
                     /translation="MSSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYI
                     ILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSNKKAWSYVGFTMVGAILIVSFYT
                     LVIGWIVKYVFLSITGNLPMDLEVSKAQFGFFISEDFLSQFICFTLVFLCVFYIVSKG
                     VKNGIEKLNVWMMPSLFILLILMLVYAISKDGFIMAVKFLFVPDFSKINTSNVLEALG
                     LAFFSLSLGVGTIITYSASLPDKTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYN
                     PNQQGPGLVFISLATLFEKIGVIGCIFGAAFFISLIFAGITSAVSMIEPFTFYLINTF
                     GMSRKKALILIGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSVSSKVIMPLGGIL
                     AAIFVGFVMKKEALKILFKPYMRGIFFELWYVFLRFISPLAVVIVMIAAFLK"
     gene            6739..>7924
                     /locus_tag="RJ259_001331"
     CDS             6739..>7924
                     /locus_tag="RJ259_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDV7367027.1"
                     /translation="MRTYFSKIGFVLTVAGGAVGLGNAWKFPTLSAENGGFVFVLLYL
                     FFTLTIGFSIFLAEVAMGRLSKSDLANAYSNLAIKYGNRWRYGGVFMLGGIFVLSFYL
                     VIMGWVLKYTVVSLYYLPKTLDEAASNFQNLITTNLTSSVFFFTLSFFLTLLIVSKGL
                     IKGIEKLNVVIMPSLFLMLVFMLFYCMGFKQGFANAFSYLFYPDFLHFKFSSIAEALG
                     LAFFTLCLGIGCIVTYSSALDKKTNFIKSSVYIVLINLLISFIMGLIVFTFIFEFGAD
                     PHTQGVGIVFISLMSLFNQLGALGYIFAFCFFLALFFAGITSAVSMIEPLTFYMINNY
                     QISRVKALFLIGLFVFVFGICCILSLNLNFFSMFSFFGKDFFTLLDKLTSNFLLPLGA
                     IVC"
BASE COUNT         2568 a         1030 c         1332 g         2994 t
ORIGIN      
        1 taatatagat aattttccta aaaactgata aattcttttg taaaataagc gctaattgac
       61 gaggtttaaa taatgcaaaa aaaatctttt ttgaaaattt acggattaat tcctttttta
      121 cttatagcat tcatcaatgc ttttgtggat ttgggacata aaattattat tcaaaatact
      181 atttataagg cctatgaagg aagtgagcag ttatttttaa atgctatagt taatgctttg
      241 attttacttc cttttattct tatgctttct ccttcgggtt ttttagcgga taaatatcca
      301 aaaaatattg taatgaaaat ttcagcaatt ttcaatgtta tactcacttt aataatttgc
      361 atttgttact atagcggtgc tttttggatg gcttttattt ttacttttat aatgggagca
      421 caagcagcga tttattcacc aagtaaatac ggttttatta aagaactcgt gggaaaagac
      481 tttcttgcta tgggtaatgg tgtaattaat gcggtaagca ttgtggcaat cttagcggga
      541 atggctttat tttctttaag ctttgaaagt ctttatagtt ctatgtataa tcaaacagat
      601 gaaattttaa aagaagtagc gcctttagga attgtgctaa ttttattttc ttgtatcgaa
      661 gtattttttg cgtggcgttt acctaagctc aaacaaacaa ataaagattt agtttttaat
      721 aaaaaagact atattcgtgg aaaacttcta ataaataatc ttaagcttgt ttttaaaaat
      781 aaaactattt ggctttgtat aattggaatt tcattttttt gggctatatc tcaactttat
      841 cttgtcagct ttcctgtctt tgctaaaaat gaacttttca tagaaaatac tttttatgtg
      901 caaatttcac tcgctttttc tggtatagga gtgattttag gctctttagt agctggtaaa
      961 ttttcaaaaa attatataga acttggattt attccacttg gtgcattggg tatgttttta
     1021 atggcttttt taatgcctta ttttataagt ttattaagtt atagtttttt atttttcttt
     1081 tttggatttt gcggagccct ttttatcatt cctttaaata ctttaatcca atttcatgct
     1141 aaagaaaatg aattaggaca aattcttgca ggaaataatt tttttcaaaa tattgccatg
     1201 ttgggatttt tgctcttggc aactttattt gtaaaatttg aaatcaatgt gatttatttg
     1261 ttttatttta ttgctttggt aacctttata ggaagttttt acatactttt aaaactcccc
     1321 ttttctttag tgcgtatact tttaagcata gcttttttac aacgataccg tttacttgtg
     1381 gaaggttttg aaaatatacc agaaaaaggt ggagctttac ttttgggtaa tcatatttct
     1441 tttattgatt gggctgttgt acaaatggca attccaagaa aaatttattt tgttatggaa
     1501 agaagtattt attctaaatg gtatattaaa atttttcttg ataaatttgg tattattcct
     1561 gtatcaagta caggaagtaa gacgagttta gaactgatag caaagcatat taaagaaggt
     1621 aatttagttt gcttatttcc tgaaggtaca ctttcgcggc atgggcaatt aaatgaattt
     1681 aaagcaggat ttgaattagc ttgtgaatgt ttaagtgaag atgatggaaa aattattcct
     1741 ttttatataa gagggctttg gggtagcgct ttttcaagaa gtgatgaaga attttcagca
     1801 agaaaccgca ctttaaataa aagaaaaatt gctatagctt ttggtaaagc tatgcctttg
     1861 cattctaaaa aagatgaagt taaagctaaa gtttttgaac tttcttttat ggcttggaaa
     1921 tcacaatgcg aagctatgca tactatagca agagcttgga tagatacagc taaaaaaaat
     1981 ctaaatcaaa tagctattat cgatacacta gctggagata tttcttatag aaaaatgttg
     2041 actcttagtt tatttcttaa tttttttatt aaaagaaaat ccaaagagtt aaacattaac
     2101 cttcagcgtg gaagttacgc tcctaaagag gaagctatag gaattttact acctgcttct
     2161 tttgcaagtt ctttaaccaa tctatctgtt ttaatcgcag aaaaaattgc agtaaatctt
     2221 aatttcactg ctggagaaaa agctctaaaa gcagctataa aaaatacgca aatttcacaa
     2281 atttatactt ctaaaacttt tttagaaaaa ttagcaaata aaggtataaa cctaaatttc
     2341 gatacaaata tacatttaat ttattttgaa gatattgtag aagattttaa aatgcaaaaa
     2401 actaaaattt ttagcatgat gctagcagtt agtattatac ctagttttat actcaaaagc
     2461 atcttcactc cttcaaaaaa caatcttgcc atcgcagcta ttttatttag tagtggaagt
     2521 gaaggttctc caaaaggtgt tatgctcaat aaccgtaata ttttaagcaa tatagcacaa
     2581 atttctgatg tgctttgcac aagaaataat gatgtcattc tctcatcttt accacctttt
     2641 catgcttttg gacttaccgt aactacattt ttgcctttgc ttgaaggtat taaaagcatc
     2701 actttttcag atccaaccga tgccttaggg gttgccaaag ctgttgctaa aaataatgtc
     2761 actattatgt gtggaacttc aaccttttta ggaatttatg caagaaataa aaagcttgat
     2821 gctttaatgt ttgaaagttt aagaatagtt gtatcgggcg ctgaaaaact aaaaaatgaa
     2881 gtaagaacta cttttgaaat gaagtttaaa aaaagcattt ttgaaggtta tggggctacg
     2941 gaaaccacgc ctgtggcgag tgtaaattta ccaaatcatt ttgatgtgga ttattggctt
     3001 atacatcgtg ctaataaaga aggaagcgta ggaatgcctc tacctggaac tgcggtacgt
     3061 attgttgatc caaataatta tgaaaattta aaaacaaatg aagatggact catacttata
     3121 ggcggtcatc aagttatggt aggctatctt aatgacaaag aaaaaaccga tgaagtggtt
     3181 aaagaaattg atggcataag atggtacaac acgggagata agggacattt ggatgaagat
     3241 ggttttttat atattgtcga tcgttattct cgctttgcaa aaattggcgg agagatgatt
     3301 tctttgggtg caatagaaga agaaattgcc aaatttatag acactgaagt ggttaaattt
     3361 tgtgccacat ctttagaaga tgagaaaaaa ggggaacaaa ttgttttact catagaatgc
     3421 aataatgaaa tttttgaagg agtatgtgag gctataaaaa attctaatat acctacactt
     3481 tttaaaccta gatattattt tcaaatagaa aaaattcccc tcctaggttc aggaaaagtt
     3541 gatctgaaaa aagttaaaga attagctaaa aatttagcca tataatttga gcttataaca
     3601 aagtccaaat taaaattggc atagaaacaa aagcaaaaag aactccaaag gctacagcac
     3661 ttacggctaa attactatct agtttagctt tcattaccat agctcctgct aaagtcatag
     3721 taggagctgc actttctata atagcaacga tggtagaatc ttttaattcc aaattaaata
     3781 tttttaaaca aaatacaaaa aataaaggag ctaaaatcat tttagcaaag atgacaacta
     3841 ttgtaggttt gtaagaggtt ttaatcgcca taaagccaag tcctaaacct atagcaaaaa
     3901 gtgcaacagg ggttgcagag gcaccaaata aacgaatagg agagaaaata aattcaggta
     3961 aagtaatcaa tttacacaaa aaaccaaaaa gcaaagctaa aaaaggtgga aaactaagaa
     4021 tttttttaac attagcaaac aaactgactt tttctccatt tcccaaagaa agtataaaag
     4081 gtccaaaaag tgatataggt aaagttgtgg ctaaagcatc gtaaaatata acttcagcgc
     4141 taaattgtgg gtcattaaat ataccagcaa caataggcat acccacaaat atagtatttc
     4201 caaaacaaga aagcaaaaac atactgacta aagttacttt agaaaaatga aaaacttttc
     4261 caataagaat agcaaaaaaa gctgctagta tacagctaaa caatccaata aaaataaaaa
     4321 taatcaatga aaaatcaaaa tttaaatgat atgctttatc gaaaatcaaa caaggtaaag
     4381 caaaaataat agcaaaatct aaaaaagtcc tagcttgttt ttgctttaaa acgccaattc
     4441 ttttggcaaa atatccgcct gcaagtaaaa taaaaattgt aaataatggt ataaaaacaa
     4501 acattgaata atccttttta agggatggtt tttgaaaacg gatagaatta tattctttat
     4561 acttaaaaaa aatcttaata ttttttaagt tttttaaaaa aaccaatatt ttttattttt
     4621 tgtaacttta agaaattgta agttgaaatt tgattttgaa tagttagtat tttaagttga
     4681 atgattataa ttttaaataa tggtgcggtt agcgagattt gaactcgcac acgcggagcg
     4741 caccaccccc tcaagatggc gtgtctacca attccaccat aaccgcatag aaaaaagccc
     4801 aaaaagggct ttgataagtt ttattgtaaa actataaaag gatttgcgta aagtgctatt
     4861 agcgcgataa caagagcata gataacttgt gcttcaatca tcgctaaagc gataaacata
     4921 gttgtcatta attttggccc aagaccaggg tttctagctg ttcctgcaat tgttgccgct
     4981 gcagtattac ccataccgat agcaccacca agtgctgcaa caccaagacc taagcctgct
     5041 gcaagaactg aaaatgcttt aatccataca ttaatagctt cttgctctac tggagcatta
     5101 gtttcagctg caaaagctac tgctgtacat gctaataata aaaaaagaac ttttttcatt
     5161 atcttaacct ttctataaaa aaattttttt caatttttaa atcagttcgg cttgcgtatc
     5221 cctacttaag acttaaaaat aaattcgaat tataaccaaa agtatcttta tttttattga
     5281 aatttacaaa aattcacatt tttgatttaa atttgattgt tttcaataaa gcttaaaagt
     5341 ttttttgctt taataatatt ttaaaataat ttttaagtca aggttgtaac attgagttct
     5401 aaattttcaa aaataggttt cattttagcg gtagcaggtt cagcggtggg cttgggtaat
     5461 gcttggaaat ttccaacact agtaggtcaa agtggtggat ctgcttttat cttgctttat
     5521 ataattctta ctttaggtgt aggttttgtg atatttttag ctgagcttag cataggaaaa
     5581 attagtgaaa aagatccggt taatgcctat gaaaagttag caccttcaaa taaaaaagct
     5641 tggtcttatg ttggttttac tatggtgggg gcgattttaa tagtttcttt ttataccttg
     5701 gtgattggct ggatagttaa atatgtgttt ttaagtatca ctggaaattt gcctatggat
     5761 ctagaagtaa gtaaagcaca gtttggattt tttataagtg aggatttttt aagtcagttt
     5821 atttgtttta ctttggtttt tttatgtgtt ttttatattg tttctaaagg tgttaagaat
     5881 gggattgaaa agttaaatgt ttggatgatg ccttcattgt ttattttgct tattttgatg
     5941 cttgtttatg ctattagcaa agatggtttt ataatggcgg ttaaatttct ttttgtacct
     6001 gatttttcca aaatcaacac ttcaaatgtt cttgaagcct taggacttgc tttttttagt
     6061 ctttctttgg gcgttggaac gattattact tattctgcta gtctgcctga taaaaccaat
     6121 tttattacca gtactttaaa tattattttt atcaatcttt tagttggttt attaatgggt
     6181 ttggttgttt ttacttttat ctttgagttt ggttacaatc ctaatcagca aggaccagga
     6241 cttgttttta tttccttagc tactttattt gaaaaaattg gagtgattgg ttgtattttt
     6301 ggagcagcgt tttttatttc tttaatcttt gctggtatta cttcagctgt ttcaatgata
     6361 gagcctttca ctttttacct tattaatact tttggtatga gccgtaaaaa agctttgatt
     6421 ttaataggaa ttgttgttta tattttagga atgttgtgta ttttatcttc tttaaaaagt
     6481 actcagtttg gattttttgg aatgagtttt tttgatttgc ttgatagtgt ttcaagcaag
     6541 gttattatgc ctttaggtgg aattttggca gctatttttg tgggatttgt gatgaaaaaa
     6601 gaagctttaa aaattttatt taaaccttat atgaggggta tattttttga actttggtat
     6661 gtgtttttga gatttatttc ccctttggct gttgttatag ttatgatagc cgctttttta
     6721 aagtgagttt gaaaaataat gagaacatat ttttcaaaaa tcggttttgt attgactgtt
     6781 gctggtggag ccgttggttt aggtaatgct tggaaatttc caactttaag cgcagaaaat
     6841 ggtggttttg tttttgtgct tttatatttg ttttttactt taactatagg atttagtatt
     6901 tttttggctg aagtggctat gggacgttta agtaaaagtg atcttgcaaa tgcttattca
     6961 aatcttgcca taaaatatgg caatagatgg cgatatggcg gcgtttttat gttaggtggt
     7021 atttttgtcc tctcttttta tctagttatc atgggatggg ttttaaaata tactgtagtg
     7081 agtctttatt atcttcctaa aactttagat gaagcagcaa gtaattttca gaatttaatt
     7141 actacaaatt tgacaagttc tgtttttttc ttcactttat ctttttttct tactttattg
     7201 atagtatcta aaggtttaat caaagggatt gaaaaattaa acgttgttat aatgcctagc
     7261 ttatttttaa tgcttgtttt tatgttgttt tattgcatgg gatttaagca aggttttgca
     7321 aatgcttttt cttatttatt ttatcccgat tttttacatt ttaaattcag ctctattgcc
     7381 gaagctttag ggcttgcatt ttttacctta tgcttgggaa taggttgtat agttacatat
     7441 tcatcggcct tggataaaaa aacaaatttt ataaaaagtt cagtgtatat tgttttgatt
     7501 aatttattga tttcttttat catgggactt attgttttta cttttatctt tgaatttgga
     7561 gccgatccgc atactcaagg agtaggaatt gtttttatat ccttgatgag tttgtttaat
     7621 caacttggag ctttaggcta tatttttgca ttttgttttt tcttagcact tttttttgct
     7681 ggtattactt cagctgtttc aatgatagag cctttaactt tttatatgat taataactat
     7741 caaatttctc gtgttaaagc tctattttta ataggtttat ttgtttttgt ttttggaatt
     7801 tgttgtatct tgtcattaaa tttaaatttt ttttctatgt ttagtttttt tggtaaagat
     7861 ttttttactt tattagataa attaacttca aattttttac ttccacttgg tgctatagta
     7921 tgct
//
LOCUS       DAPIWJ010000072         7875 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.073, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000072 DAPIWJ010000000
VERSION     DAPIWJ010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7875)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7875)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7875
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.073"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..212
                     /locus_tag="RJ259_001332"
     CDS             <1..212
                     /locus_tag="RJ259_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HDV7367028.1"
                     /translation="FMLSLLILILSLIFVFYFTNTIIELQKLGENTTKTQEFISIHNA
                     SEVVIKIILIMQVFLYFLSFKIAKK"
     gene            251..1000
                     /gene="flaC"
                     /locus_tag="RJ259_001333"
     CDS             251..1000
                     /gene="flaC"
                     /locus_tag="RJ259_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin C"
                     /protein_id="HDV7367029.1"
                     /translation="MMISDATIMQQNYYLNNAQKASDKALENIAAVRAISGVDSANLA
                     IADSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALNDS
                     QKGMLRTEATRIQESINDSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLATDGLSID
                     NQDSITNFMDQLGSLRSEIGSGINAITSNINASVQNSINSKAAENNLLNNDMAKNVND
                     FNANYLKENAAAFVAAQSNMQLQSKIANLLQ"
     gene            1035..1667
                     /locus_tag="RJ259_001334"
     CDS             1035..1667
                     /locus_tag="RJ259_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HDV7367030.1"
                     /translation="MTLEQILEKTKNVRLVAASKYVDASIIEKLFDQGIVEFGENQVQ
                     ALAQKKENLDEKKLDIKWHFIGTLQSNKINLLIKQKPILWHSCNGIKIAKAMDKRLDY
                     KLNTLLEINSANENSKSGLDPNQAVEEYLQIQEECSNLNLCGVMSIGSHSQDKENIIK
                     SFETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK"
     gene            complement(1679..5281)
                     /gene="dnaE"
                     /locus_tag="RJ259_001335"
     CDS             complement(1679..5281)
                     /gene="dnaE"
                     /locus_tag="RJ259_001335"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HDV7367031.1"
                     /translation="MSQFTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGN
                     MFGAIDFYQTMKAQGLKPIIGIEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMY
                     LSSQSYIKGLYYYPRINKKLLEDYSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGY
                     EAAKEAALWYKKVFKDDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTF
                     KERAAAHEVFMCIAMGKKLNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIA
                     QKCNLELNLGNPTPPNFKFTREYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEER
                     LKFIDESKHEEYKQRLEVEINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAG
                     SLVSYCLRITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGAD
                     KVAQVITFGKLLAKGVIRDVARVCDMSIQDADELAKLVPEELKITLDAAYEKEPKIKE
                     FIDRHPKGLEVWEYARALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVT
                     QYSKDHLEDVDLIKFDFLGLKTLTVINNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQ
                     SGNTLGIFQIESGGMQSLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLK
                     SIEYPFDSLEKVLEPTYGVIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKK
                     LKTDFADGAEKQGYDRAKAEDLWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPS
                     EFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSINKAIREFSALEQDGKDAIIYGL
                     GAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT
                     RKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQVNFTPKNEEFEVMEKLGY
                     EKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGEILSIGKIEDFKSMMSKNN
                     KRYGRIEILDYYSSFDATVFESNVEEIENIIKDENLKNNAYGFVLGFKAEGGEKPSFF
                     LKAIKDLQSLEDGEIKAIKKFGAKKDFKNKEENHFTAEPKEFEKNIIELDLTRLNREL
                     IYEIHEIARNAHNPNEKNNKKLVLKVISAGSCLLYHTDFIISDSIVEEISNKYA"
     gene            5510..5716
                     /locus_tag="RJ259_001336"
                     /pseudo
     CDS             5510..5716
                     /locus_tag="RJ259_001336"
                     /inference="COORDINATES: protein motif:HMM:TIGR02174.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SelT/SelW/SelH family protein"
     gene            complement(5729..6058)
                     /locus_tag="RJ259_001337"
     CDS             complement(5729..6058)
                     /locus_tag="RJ259_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family transcriptional regulator"
                     /protein_id="HDV7367032.1"
                     /translation="MKLYGIKNCNSVKKAMDALTQKGIVFDFMDIKKINQDILYTWLK
                     QKSFEELINTAGLTSKKLGLNKEKVKNLNEKELEKIVLENPSCIKRPIIEYEQNIYIG
                     KEYEKML"
     gene            complement(6055..7395)
                     /locus_tag="RJ259_001338"
     CDS             complement(6055..7395)
                     /locus_tag="RJ259_001338"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HDV7367033.1"
                     /translation="MWAKNSWKNYPIKQQPIYPDQEEMNRVLARLEKLPPLVFAGEVR
                     NLQKSLARVCKKEAFLLQGGDCAESFENFGAVNIRDMFKILLQMAIVLTFAGGCPVIK
                     IGRIAGQFAKPRSSDFEELDGISLPSYRGDIINGFEFSEQARIPDPHRMLEAYYQSAI
                     TLNLLRGFAKGGLADLHEVHRWNLGFLKKSELHKQYTDISEKISQALAFMEACGINTS
                     NTPSLREVSVYTSHEALLLPYEEALTRVDSLSGEIYDCSAHMLWIGERTRALDEAHVH
                     FLSGVKNPLGVKIGPSASADDIIALANVLNPNNEEGRLNIIIRMGADKIINNLPKIFS
                     KLKSEGLNLVYSIDPMHGNTVKAGNFKTREFDKIMQEVRSFFEIAISEGVYPGGVHLE
                     MTGKDVTECTGGASNVTAQSLEDRYETQCDPRLNADQALELAFLIADLVKKTRK"
     gene            complement(7419..7832)
                     /gene="uraH"
                     /locus_tag="RJ259_001339"
     CDS             complement(7419..7832)
                     /gene="uraH"
                     /locus_tag="RJ259_001339"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HDV7367034.1"
                     /translation="MFSIKKTLLILASVPMFLSATEYQLSTHVLDITSGQPAPKVKVE
                     LYKLEANQQWKKVSEEFTEENGRIGDLLPYEKAENRAFGIYKLKFFTKDYYTSHKINT
                     FYPFVEVSFELSKDQKHYHVPITLSPFGYSTYRGS"
BASE COUNT         2681 a         1451 c         1032 g         2711 t
ORIGIN      
        1 aatttatgct gagtttgctt attttgattt taagcttaat atttgttttt tattttacta
       61 ataccataat tgaactccag aaattaggcg aaaacactac aaaaactcaa gaatttatca
      121 gcatccataa tgcaagtgaa gtggtgatta aaatcatctt gataatgcaa gtttttttat
      181 atttcttaag ctttaaaata gcaaaaaaat gataaaatat taaataaatc caaaagagaa
      241 ggagtaggcc atgatgatct ctgatgcaac tataatgcaa caaaattatt atttaaataa
      301 tgcacaaaaa gctagcgata aagctttaga aaatattgca gctgttcgcg caataagtgg
      361 agttgatagt gctaatttag ctattgctga ttctttaaga tctcaatcaa gcactataga
      421 tcaaggtgtc gcaaatgctt atgatgctat aggggtttta caaattgcag atgctagcct
      481 taccaatatc tctcaaagcg cagatagact taatgaactt tcagtaaaaa tgaacaatgc
      541 tgcacttaat gattctcaaa aaggaatgct aagaacagaa gcaacacgca tacaagaatc
      601 catcaatgat tcttttaata atgcaactta taatggaaaa aatgtctttc aaactatgaa
      661 ttttgtagta ggtagcggaa ctgaaactac aaatttaaat ccattagcaa cagatggatt
      721 aagcatagac aatcaagata gtattacaaa ttttatggat caacttggaa gtttaagaag
      781 tgaaataggc tcaggtatca atgccatcac atcaaatatt aatgcaagtg ttcaaaatag
      841 catcaactca aaagcagctg aaaataattt actaaataat gacatggcaa aaaatgtcaa
      901 tgattttaat gccaattatc taaaagaaaa tgctgctgct tttgttgctg cgcaatccaa
      961 catgcagctt caaagcaaaa ttgctaattt attacaataa aataagccct aaatagggct
     1021 tattttttat caaaatgact ttagagcaaa ttttagaaaa aaccaaaaac gttcgtcttg
     1081 tagccgcaag caagtatgtc gatgcaagta taattgaaaa gctttttgat caaggtatag
     1141 tagaatttgg agaaaatcaa gtccaagctc tagcacaaaa aaaagaaaat cttgatgaaa
     1201 aaaaactaga cataaagtgg cattttatag gaacgctaca aagcaacaaa atcaatctct
     1261 taatcaaaca aaaacctata ttatggcact cttgcaatgg tattaaaata gctaaagcta
     1321 tggacaaaag acttgattat aaattaaata ctttattaga aatcaatagt gcaaatgaaa
     1381 atagcaaaag cggtctagat ccaaatcaag ccgtagaaga atatttacaa atacaagaag
     1441 aatgctctaa tttaaatctt tgtggcgtaa tgagcatagg atcacacagc caagataaag
     1501 aaaatattat aaaaagcttt gaaactacat ttaaaattta tgaaattctt caaaaacatg
     1561 gggctaagat ttgctctatg gggatgagta atgattttga aattgctata aaatgcggat
     1621 ccaacttggt aagactcgga agcattttat ttaaaaatct taagtaaaac aatcttactt
     1681 aagcatattt attagaaatt tcctctacta tactatcaga gataataaaa tctgtatgat
     1741 aaagcaggca agatcccgcg ctaataactt ttaaaacaag ttttttatta tttttttcat
     1801 taggattatg tgcatttcta gcaatttcat gaatttcata gattaattct ctatttaacc
     1861 ttgtcaaatc tagctctatg atattttttt caaattcctt aggttctgcg gtaaaatgat
     1921 tttcttcttt atttttaaaa tctttttttg ctccaaattt ttttatagct ttaatctcgc
     1981 catcttcaag actttgcaaa tctttaattg cttttaaaaa aaagctaggc ttctcccctc
     2041 cttcagcttt aaatcccaat acaaaaccat aggcattatt ttttaaattt tcatctttga
     2101 tgatgttttc tatttcttct acattgcttt caaatacagt agcatcaaac gaagaataat
     2161 aatccaaaat ttcaattcta ccataacgct tattattttt actcatcatg gatttgaaat
     2221 cttcaatttt acctatactt aaaatttctc cattgttttt taaactttca aaatctaaac
     2281 ttttaacata atctatggca ttaatttgtt cataaaatcg atctaaagga tggcctgaaa
     2341 cataaattcc taaaatttct ttttcatatc ctaatttttc catcacttca aattcttcat
     2401 ttttgggagt aaaatttact tgaacacctg aagttaattc ctcttcacca aaaagagaac
     2461 ttgcagcatt ttttcttact tcagccattt tacgcgatgc ttcgctaaga ttttccatat
     2521 tatcaaacaa agcttttcta gtaaaaccaa actcatcaaa agcccctgcc ttaataagac
     2581 tttctaatgt tctacggttt attttggtgg gatctatctt acctaagaaa tcattaatat
     2641 ccttaaattc tccatcttgt cttgcttcaa gtaaattttc aactgcagga atacccacac
     2701 tttttatagc cccaagtccg tatataatag catccttgcc atcttgctct aaagcactaa
     2761 attcacggat cgctttgtta atcgatggag gtaaaagttt aatattcatt tttttcatct
     2821 catcaatata aacagcaatt ttatccacat tgttttcttc gcttgttaaa agcgctgcca
     2881 taaattcact aggataataa gtttttaaat aagctgtttg aaaagtaatc aatgcataag
     2941 ccgcagagtg agatttatta aaaccatatc ctgcaaattt tacgataagc tcccataaat
     3001 cctcagcttt tgctctatca tatccttgtt tttctgctcc atctgcaaaa tcagttttaa
     3061 gctttttcat cttctcagga tcttttttac ccatagcacg acgcactaca tcagcacctc
     3121 ctaaagaaaa gccacctata atttgaacaa tttgcataac ctgttcttga taaacaataa
     3181 ccccataagt aggctctaaa accttttcta aactgtcaaa aggatattct atacttttta
     3241 aaccatgctt tctgtcgata aaatcatcaa gcattcctga ttccataggg cctggacgat
     3301 aaagcgcaag aaccgcaatg atatcttcaa aacgctctgg ttttaagcgt gcatttaagc
     3361 tttgcatacc gcctgattcg atttgaaaaa ttcccaaagt atttccactt tgtatggttt
     3421 tataaacttt gctatcattt acatctatag tttcccaaat aatgtcttta ttgtaacgct
     3481 ttttaataag cttgatcgca ttattgatta ctgttaaggt tttaagacct aaaaagtcaa
     3541 attttatcaa atccacatct tctaaatgat ctttagaata ctgcgttacc aaatgtcttt
     3601 catcattttt actttgtcta aaaagcggag ttttcttcca taaactttca ttagaaatta
     3661 caacacctgc tgcgtgcata cccgcattgc gatttaatcc ttctaaagct cttgcatact
     3721 cccaaacttc aagaccttta ggatgacgat cgataaattc tttgatttta ggttcttttt
     3781 cataagcagc atcaagagtg attttaagct cttcaggcac aagtttagca agctcatcag
     3841 catcttgaat actcatatca caaactctag ccacatcacg aatcacccct ttagccaaaa
     3901 gtttaccaaa ggtaatcacc tgtgcaacct tatccgctcc atatttatca atcacataat
     3961 caatcacttc agcacgtctg tcttgacaaa aatccacatc aatatcaggc atgctcacac
     4021 gctcaggatt taaaaaacgc tcaaaaagta gactataagg aataggatct aaatccgtaa
     4081 tccttaaaca ataagaaacc aaacttcctg cagctgatcc tcttccaggg cctactggaa
     4141 tacctttatc cttagccact ttaataaaat catgaacaat aagcatataa cctgaaaatt
     4201 tcatattttt aatgatgtta atttctactt caagcctttg tttgtattct tcatgcttac
     4261 tttcatcgat aaattttaat ctctcttcaa gtcccttttt gcaaagttct tcaaaaacca
     4321 tgtcatcatt atcaaagcta aattcttttg tttcttcagg taagataata ttatgatctt
     4381 tagcatattc tcttgtaaat ttaaaattcg gtggagtggg attgccaaga ttaagctcta
     4441 aattacattt ttgtgcgatt tcttgtgtat tttctatagc ttctggaata tctgcaaaaa
     4501 gctcactcat ctgctcagga cttttaacat aaaattcatg cacactatga cgcattctat
     4561 caggatcgtt aagttttttt cccatggcta tacacataaa aacctcatgg gcagccgctc
     4621 tttctttaaa agtataatgc gtatcatttg tagcaatgat ttttatattt aattctttag
     4681 aaagtctgat aatatcatca tctatcattc tttgatcgcc tataccatga cgcatgattt
     4741 caaaataaaa atcatcttta aaaacttttt tataccataa tgccgcttct tttgctgctt
     4801 catagccttt tgcaccaaaa cgcacatttc tttcactata agtatttaag tgccaattta
     4861 cttcaccttg caagcaagca gaagagcaaa taagaccttc gctataatct tccaaaagct
     4921 ttttattgat acgcggataa taatacaaac ctttaatata actttgagaa cttaaataca
     4981 ttaaattttg atatccaatc tcattttttg catacaaaca aaggtgaaaa cgctgacgag
     5041 aacttttatc atctaactca tcatgattat gcaaatacgc ttctatacca atgataggtt
     5101 ttaaaccttg tgctttcatt gtttgataaa aatcaattgc cccaaacata tttccatgat
     5161 ctgtcatagc cacacttgta gcaccctgct cttttaaagt caaagctaat tctttaagct
     5221 tattggctcc atcaagcaaa gaatattctg tatgtaaatg caagtgtgta aattgactca
     5281 ttttcttcct ttagtttttt aaggcttatt ttaattttga taaaaattat aaatttttct
     5341 cgctgaattt gaaagaaatt gaccctaaat ttcaacttaa attttacaaa aaggcaaaaa
     5401 ttcagccaaa ataaactata ataaaatcta agattttaat cttaataaaa agaacttctc
     5461 aaaggatgaa atgatgaaag taaaaattgc ttattgcaat ctttgaaatt atcgcccaca
     5521 agctgcaagg gttgcagaag aactacaaag cgatttcaaa gatgttgaag tagaatttga
     5581 aattggcggc agaggtgatt ttatcgttga agtagacgga aaagttatct tctctaaaac
     5641 acaacttatt aattgcgaaa gtgaaagatt tccatatcaa aatgaaatta atcaattaat
     5701 aaaaaataga gtgtaatcaa acactctatc ataacatttt ctcatattcc ttaccaatat
     5761 atatgttttg ctcatactcg ataataggac gcttaataca acttggattt tccaatacaa
     5821 ttttttcaag ttctttttca tttaaatttt taactttttc tttgtttaag ccaagttttt
     5881 tagaagttaa tccagcagta ttgataagtt cttcaaaaga tttttgtttt aaccatgtgt
     5941 ataaaatatc ttgattaatc tttttaatat ccataaaatc aaacacaata cctttttgtg
     6001 ttaaagcatc catagctttc tttacagaat tgcaattttt aataccataa agtttcattt
     6061 tctagtcttt tttaccaaat ctgcgattaa aaaagcaagt tctaatgctt gatccgcatt
     6121 aagtcttgga tcgcattgag tctcataacg atcttccaag ctttgagcag taacattgct
     6181 tgcaccacct gtgcattctg ttacatcttt cccagtcatt tcaagatgca ctccacctgg
     6241 ataaacccct tcgcttattg caatctcaaa aaaagatctc acttcttgca taattttatc
     6301 aaactcacgt gttttaaaat tgcctgcttt taccgtattt ccatgcatag gatctatgct
     6361 atatactaaa tttaaacctt cacttttaag tttagagaaa atttttggca aattattgat
     6421 aattttatct gcacccatgc ggataataat atttaatctt ccttcttcat tgtttggatt
     6481 taaaacattt gctaaagcta tgatatcatc agcacttgca ctaggtccta ttttaacccc
     6541 taaaggattt tttactccac ttaaaaaatg cacatgagct tcatcaagcg cccttgttct
     6601 ttcacctatc caaagcatgt gagctgaaca atcgtaaatt tctccactta aactatccac
     6661 tctagttaaa gcttcttcat aaggcaaaag taaagcttca tgtgaagtat aaacactaac
     6721 ttctcttaga cttggagtat tacttgtatt aattccacaa gcttccataa aagctaaagc
     6781 ttgtgaaatt ttttcactga tatcagtata ttgcttatgg agttcactct tttttaaaaa
     6841 gcccaaattc caacgatgta cttcatgtaa atctgctaaa ccacccttag caaatccacg
     6901 caacaaattt agcgttattg cgctttgata ataagcttca agcattctat gtggatcagg
     6961 aatgcgtgct tgttcactaa attcaaaacc attaataata tcaccacgat aactaggaag
     7021 acttatacca tctaactctt caaaatcact acttcttggc ttggcaaact gccctgcaat
     7081 acgaccaatt tttataacag gacatccacc agcaaatgta agtactatag ccatttgaag
     7141 taaaatttta aacatatcac ggatatttac agcgccaaaa ttttcaaaac tttcagcgca
     7201 atctccacct tgaagtaaaa aagcttcttt tttacaaact cttgctaaag acttttgaag
     7261 atttctcact tctccagcaa aaaccaaagg aggaagtttc tcaagtcttg ctaaaactct
     7321 attcatttcc tcttgatctg gatagatagg ttgctgtttt ataggatagt ttttccaaga
     7381 attcttagcc cacatggttt tttctttcgt tttatttatc agcttcctct ataagttgaa
     7441 taaccaaaag gagaaagggt tattggaaca tgataatgtt tctgatcttt agaaagctca
     7501 aaacttacct ctacaaaagg ataaaaagta tttattttgt gtgatgtgta atagtctttt
     7561 gtaaaaaatt taagcttata aattccaaaa gccctatttt cagctttttc atatggtaat
     7621 aaatctccta ttctaccatt ttcttcggta aattcttcac ttactttttt ccactgttga
     7681 tttgcttcca acttataaag ctcaactttt actttaggag caggttgtcc agaagtaata
     7741 tccaagacat gagtacttaa ttgatattca gtagcactca aaaacattgg cacgcttgct
     7801 agtattaata aagttttttt aatagaaaac attttctctc cttgtataat atttacaagg
     7861 aatattatac aagag
//
LOCUS       DAPIWJ010000073         7718 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.074, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000073 DAPIWJ010000000
VERSION     DAPIWJ010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7718)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7718)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7718
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.074"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            36..1331
                     /locus_tag="RJ259_001340"
     CDS             36..1331
                     /locus_tag="RJ259_001340"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HDV7367035.1"
                     /translation="MYRFAPSPTGDMHIGNLRAAIFNYICARQKNMDFILRIEDTDKA
                     RNIAGKEEEIKEILNLFSISWQHYYIQSENLKFHRQMALKLVSEKKAFACFCTEEELE
                     AKKELAKKQGKAYRYDGTCEKLADIDVLECEKPFVIRLKKPTHTMKFTDFIKGELSFE
                     PENIDSFVIMRTDKTPTYNFACAVDDMLENVTCIIRGEDHVSNTPKQEHIRASLGYNK
                     AMTYAHLPIILNEEGVKMSKREAHSSVKWLLESGILPSAIANYLVILGNKTPCEIFTL
                     EEAIKWFDISKVSKAPARFDLKKLLQINREHIKMIKDDELNKILDLNKDLAQLAKFYT
                     QETSTIKELKEKMQAIFNAKDFGEFETECKILKELLKDIELFENYEDFKNELLNKSNL
                     KGKKFFMPLRIILTGNIHGPELSDLYPYIKNFIHELARI"
     gene            1334..1615
                     /locus_tag="RJ259_001341"
     CDS             1334..1615
                     /locus_tag="RJ259_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HDV7367036.1"
                     /translation="MVIDSFIISIFQVLQIVINIYTWIIIITALLSWVNPDPYNPIVQ
                     ILYKLSYPAYALVRKIPTRIGNIDLAPLIIVLALQFLGIFLGNILRSIL"
     gene            1612..3237
                     /locus_tag="RJ259_001342"
     CDS             1612..3237
                     /locus_tag="RJ259_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HDV7367037.1"
                     /translation="MIKKILVFLFIFSSLNATQYSIEKLKKEENSLAKDYYIYRLLEK
                     NKISKKDAQDLNSHIFRYIGKIKSELEKIIPLKPYINPKYAKCYTYIANTILDANLTC
                     QSVRLNSLVFIASLNSKDRTTLAQTFKNQRPDLTNLLLAFNTSDPMSYIVQKEDINGF
                     FKLYNYSKKYDLDLNTSLVNKLPNHIGFKDFAQNIIIKKENPKFRYSMLEINPENVSE
                     DSAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIFWMWLIKNNEEDLKTLSQ
                     SSSLNIYSLYAKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQKINKQIRDANASQLD
                     VLAKEFDTQETLPIYAYILERKNNFKKHYFIMPYYDNIKDYNKTRQALILAIARQESR
                     FIPTAISVSYALGMMQFMPFLANHIGEKELKIPNFDQDFMFKPEIAYYFGNYHLNYLE
                     SRLKSPLFVAYAYNGGIGFTNRMLARNDMFKTGKFEPFLSMELVPYQESRIYGKKVLA
                     NYIVYRHLLNDSIKISDIFENLIQNKANDLNKS"
     gene            complement(3134..3619)
                     /locus_tag="RJ259_001343"
     CDS             complement(3134..3619)
                     /locus_tag="RJ259_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367038.1"
                     /translation="MKIYSVILGAFLLGACSLKDQAIVDTNLKSQTLMFTQKYKITQD
                     KINAIITMSYLNPILDKTSKDDVLALSFTPNTLKIQNLEVFINNKKANIEKLDDEYLK
                     YIIQNNYTDYFKVSLPSVKEEIRLVAKICLDHLPCFELNFQKYPKSLYYRSEDVDTQY
                     N"
     gene            3715..4206
                     /gene="mobB"
                     /locus_tag="RJ259_001344"
     CDS             3715..4206
                     /gene="mobB"
                     /locus_tag="RJ259_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HDV7367039.1"
                     /translation="MKQLIIAFSGPSNSGKTTLITKIADNFLQQNLKVLIIKHDPADK
                     AQFDFNGKDSFKFFQSGAEVMVLSPTRTTFFSHENRDILKALKLSPDFDICLVEGLKT
                     LDLPRISVFCKEIDESYFIFSNAIASYEKISHPYLTWLDLNDIQAICQYILKNAKNLQ
                     GEL"
     gene            4208..5050
                     /locus_tag="RJ259_001345"
     CDS             4208..5050
                     /locus_tag="RJ259_001345"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HDV7367040.1"
                     /translation="MQEVISYIQKAVLEISNALKFPDTSYSQNQNFTGDTQLKFDVLS
                     DEIITKTLSQCSSIKAIISEEKDEILTLNERANFIVAYDPLDGSSLMDVNFAIGSIFA
                     IYEEKASAKNLRAALYSMYGARLELVICKDQPKLYRLNANNEFIFIKDLRMNEKGKIN
                     ATGGTQKFWEEKHAKFIKSLFDEGYRLRYSGAMVSDINQILLKRGGIFSYPATQDAPN
                     GKLRAFFEVFPLAFIIEKAGGKTTNGKNRSLLELEFDKIHATTPCFFGSEYEISKLLK
                     AYNE"
     gene            5043..5240
                     /locus_tag="RJ259_001346"
     CDS             5043..5240
                     /locus_tag="RJ259_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367041.1"
                     /translation="MNEVRDEFEQDMDKKKEILLSCQNSKNLNSCYNCDEIFNCQTRK
                     NYVDAVYNSMSKGKTEGGFDF"
     gene            5250..7136
                     /gene="metG"
                     /locus_tag="RJ259_001347"
     CDS             5250..7136
                     /gene="metG"
                     /locus_tag="RJ259_001347"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HDV7367042.1"
                     /translation="MRYITTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRFLT
                     GTDEHGQKIEEAAKLRNSTPQEYADKISFEFKKLWDEFEITYDIYARTTDTRHIEFIK
                     AMFLKMWQKGDIYKDEYEGHYCISCESFFTQSQLINDCSCPDCGKQTRILKEESYFFK
                     LSKYQDKILQWYEEKDPILPKNKKNELINFVQNGLKDLSITRTSFDWGIKLPQEINDD
                     KHIIYVWLDALFIYVSSLDFQNKGENAKFWPAHVHLVGKDILRFHAIYWPAFLMSVDL
                     PLPKFIGAHGWWTKEGEKMSKSKGNVVKPKEVVDAYGSEAFRYFLLREVPFGNDGDFS
                     ENMLINRINAELSNEFGNLLNRIIGMSTKYSQGNISKEGVLKFYNAELNQAKEHLNLA
                     VEFLENLQCNRYLEELFKALSVANLAISKYEPWSLIKENKHEQANALVALCANILAKT
                     SLLLSPTLPKSSQKVALALNFEISSANYTKMILDNELLDFKANPCEALFPKVEKALLK
                     QEIKEEPKKEESPKIKIDDFAKIEIKVAKVLDCQNIEGSEKLLKFQLELDDKEIRQVL
                     SGIAKYYKASDLIGKQVCVISNLKKAKIFGHESDGMILSAKSGDKLVLIAPEQLVQNG
                     SLVG"
     gene            7140..>7718
                     /locus_tag="RJ259_001348"
     CDS             7140..>7718
                     /locus_tag="RJ259_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367043.1"
                     /translation="MQISNLGELLNATLIHEGSVLSVEGFAINLNELKTGFAFFNNDK
                     KEIAQAVKKGAYAIITENDITIEDKEIFYFRVENLERALVRFLRFFCEDKECEFLLFK
                     SYELSLCKAFYFNILKGNIFADFEKLIKAKKGEIFCYCEENYLNKLCTYSHSLKDANF
                     TLLSRSSFFFTTLICENLYFKNLNLPFFYANSF"
BASE COUNT         2890 a         1122 c         1174 g         2532 t
ORIGIN      
        1 ataataagct tttaaataat tttaaaggct ataagatgta ccgttttgca ccttctccca
       61 caggtgatat gcacatagga aatttacgcg cagcaatttt taattatatc tgtgcaagac
      121 aaaaaaatat ggattttatc ttacgtattg aagatactga taaggctaga aatatagcag
      181 gaaaagaaga agaaatcaaa gaaattttaa atctttttag tatttcatgg cagcattact
      241 atatacaaag tgaaaattta aaattccatc gccaaatggc tttaaaactt gtaagcgaaa
      301 aaaaagcttt tgcttgtttt tgcaccgaag aagaacttga agcaaaaaaa gagctggcta
      361 aaaaacaagg taaagcttat cgctacgatg gcacttgtga aaaactagcc gatattgatg
      421 ttttagaatg tgaaaaaccc tttgttatcc gtcttaaaaa acctactcat actatgaaat
      481 ttactgattt tatcaaaggc gagcttagtt ttgagcctga aaacatagac tcttttgtga
      541 ttatgagaac ggataaaact ccaacttata attttgcttg tgcggttgat gatatgcttg
      601 aaaatgtcac ttgtattata cgcggagaag atcatgtttc aaacactcca aaacaagaac
      661 atatccgcgc aagcttaggt tataataaag ccatgactta tgcacacttg cctatcattt
      721 taaacgaaga aggtgttaaa atgagtaaaa gagaagcaca ttcttctgta aaatggctac
      781 ttgaaagtgg aattttacct agcgcaatcg cgaattatct tgtcatacta ggcaataaaa
      841 ctccttgtga aatttttacc ttagaagagg ctataaaatg gtttgatatt tctaaagttt
      901 caaaagctcc cgcaagattt gatcttaaaa aactcttaca aatcaatcgt gaacatatca
      961 aaatgatcaa agatgatgag cttaataaaa ttttagattt aaacaaagat cttgcacaac
     1021 ttgctaaatt ttatactcaa gaaacaagta ctataaaaga acttaaagaa aaaatgcaag
     1081 ctatttttaa cgcaaaagat tttggcgagt ttgaaacaga atgtaaaatt ttaaaagaac
     1141 tcttaaaaga tattgaactt tttgaaaatt atgaagattt taaaaatgaa cttttaaata
     1201 aaagcaactt aaaaggtaaa aaatttttca tgcctttaag gataatttta acaggaaata
     1261 tccacggacc tgagcttagt gatctttatc cttatattaa aaattttatt cacgaattag
     1321 caaggattta actatggtta tagactcttt tattatttct atttttcaag tacttcaaat
     1381 tgtcattaac atttatactt ggattattat catcacagca cttttaagct gggtaaaccc
     1441 tgatccttat aatcccatag tgcaaatttt atataaacta agctaccctg cttacgcctt
     1501 agttagaaaa attccaacac gcattggtaa tattgatctt gcgcctttga ttatagtctt
     1561 agcattgcag tttcttggca tttttcttgg gaatatctta aggagtatat tgtgataaaa
     1621 aaaatactcg tttttttatt tattttttca agtttaaatg ctacacaata tagtatagaa
     1681 aaactcaaaa aggaagaaaa ttcacttgct aaggattatt atatttatag gcttttagaa
     1741 aaaaataaaa tcagtaaaaa agatgcacag gatttaaatt ctcatatttt tcgctatata
     1801 ggaaaaatta aatctgaact tgaaaaaatc atccctttaa agccttatat caacccaaaa
     1861 tatgctaaat gctataccta tatagcaaat actatcttag atgcaaattt aacttgtcaa
     1921 agtgtgcgct taaattcatt agtttttata gcgagtctaa attccaaaga ccgaactact
     1981 ttagctcaaa cctttaaaaa tcaaagacct gatttgacaa atttattgct agcttttaat
     2041 acttctgatc ctatgagcta tatagtacaa aaagaagata ttaatggttt ttttaaactt
     2101 tataattatt ctaaaaaata cgacttagat ttaaatacaa gtttagtcaa taaactacca
     2161 aaccacattg gttttaaaga ttttgcacaa aatattatta ttaaaaaaga aaatccaaaa
     2221 tttagatatt ctatgctaga aataaatcct gaaaatgtaa gtgaagattc tgctttctat
     2281 ttaggagtca atgccttaac ttatgataaa acagagcttg cttatgactt ttttaaaaag
     2341 gcggcacaaa gttttaaatc gcaaagtaat aaagacaatg ctatattttg gatgtggttg
     2401 attaaaaaca atgaagaaga tttaaaaact ttatcgcaaa gttcttcttt aaatatttat
     2461 agtctttacg caaaagaact taccaacaca ccttttccaa agatagaaag ccttaatcca
     2521 agcaagaaaa aaaataattt taatatgcaa gatccttttg cttggcaaaa aataaacaaa
     2581 caaattcgcg atgctaacgc aagtcaacta gatgtcttgg caaaagaatt tgacacacaa
     2641 gaaaccttgc ctatttatgc ttacatatta gaacgcaaaa ataattttaa aaaacattat
     2701 tttataatgc cttattatga taatataaaa gactataaca aaacaagaca agctttaatt
     2761 ttggctattg ccagacaaga aagtcgtttt attccaactg ctatttcagt ttcttatgct
     2821 ttaggcatga tgcaatttat gccattttta gccaatcaca taggggaaaa agaattaaaa
     2881 attccaaatt tcgatcaaga ttttatgttt aaacctgaaa tagcatatta ctttggaaac
     2941 tatcatctaa attaccttga atcacgttta aaatctccac tttttgtcgc ttatgcttat
     3001 aatggcggta taggatttac taaccgtatg cttgcaagaa atgatatgtt taagacaggc
     3061 aaatttgaac ctttcttgtc tatggagcta gttccttatc aagaaagccg aatttacgga
     3121 aaaaaagttc tagctaatta tattgtgtat cgacatcttc tgaacgatag tataaagatt
     3181 tcggatattt ttgaaaattt aattcaaaac aaggcaaatg atctaaacaa atcttagcta
     3241 caagcctaat ctcttccttg acactaggaa gagatacttt aaaataatca gtatagttgt
     3301 tttgtattat atattttaaa tactcatcat ccaatttttc aatattggct tttttattat
     3361 tgataaaaac ttctaaattt tgaattttta atgtatttgg agtaaaagat aaagctaata
     3421 catcatcttt acttgtcttg tctagaattg ggtttaaata agacatagtt ataatggcat
     3481 taatcttatc ttgtgtgatt ttgtattttt gagtaaacat taaagtttga gattttaaat
     3541 ttgtatccac aatcgcctga tcttttaaag aacaagctcc aagcaaaaaa gcacctaaaa
     3601 ttacactata aattttcatt ctttttccat attttttagt attattgtag ccttttaacc
     3661 ctattttttg gtttaaaaag atataatttt gcaaaaaaat taagagtata ttttatgaaa
     3721 caacttatta tagcttttag cgggccttca aattcaggaa aaactacact catcactaaa
     3781 atagctgata attttttgca acaaaattta aaagttttaa tcattaaaca tgaccctgcc
     3841 gataaagctc aatttgattt taacggtaaa gatagtttta aattttttca aagtggagct
     3901 gaagtcatgg ttttaagccc tacaagaaca actttttttt ctcatgaaaa tagagatatt
     3961 ttaaaagctt taaaattaag ccctgatttt gacatttgtt tggttgaagg attaaaaact
     4021 cttgatttac cacgcattag cgtattttgc aaagaaattg atgaaagtta ttttattttt
     4081 tcaaacgcca ttgcaagcta tgaaaaaatt tctcaccctt atcttacttg gcttgattta
     4141 aacgatatac aagctatttg ccaatacata cttaaaaatg ctaaaaattt acaaggagaa
     4201 ttataaaatg caagaagtga tttcttatat acaaaaagcg gttttagaaa tttctaacgc
     4261 tttaaaattt cccgatacaa gctacagtca aaatcaaaat tttacaggcg atacccaact
     4321 caaatttgat gttttaagtg atgaaattat cacaaaaacc ctaagtcaat gttcaagtat
     4381 taaagccatc atcagtgaag aaaaagatga aattttaacg cttaacgaga gggcaaattt
     4441 tatcgtagct tatgatcctt tagacggttc tagcttaatg gatgttaatt ttgccatagg
     4501 ttctattttt gctatctatg aagaaaaagc aagtgctaaa aatttaagag ctgcgcttta
     4561 tagtatgtat ggagcgcgat tagaacttgt gatttgcaaa gatcagccaa aactttatcg
     4621 cttaaatgca aataatgaat ttatttttat aaaagatctt agaatgaatg aaaaaggcaa
     4681 gattaatgct acaggcggaa cgcaaaaatt ttgggaagaa aaacacgcta aatttatcaa
     4741 aagtcttttt gatgaaggct atcgcttaag atattctgga gccatggtaa gcgatatcaa
     4801 tcaaatttta ttaaaaaggg gtggcatttt tagctatcct gcaacacaag atgcgcctaa
     4861 tggcaaactt cgtgcctttt ttgaagtctt tcctctagcc tttatcatag aaaaagcagg
     4921 cggaaaaact acaaatggaa aaaaccgctc tttacttgaa cttgaatttg ataaaatcca
     4981 tgcgacaact ccttgttttt ttggctcaga atatgaaatt tcaaaacttt taaaggctta
     5041 caatgaatga agttagagat gaatttgagc aagatatgga taaaaaaaaa gaaattttac
     5101 tttcatgtca aaactcaaaa aacctaaact cttgttataa ttgcgatgaa atttttaact
     5161 gccaaactag aaaaaattat gttgatgcag tctataacag tatgtctaag ggtaaaaccg
     5221 aaggcggatt tgacttttaa aggaaaaaaa tgcgttatat tacaacacca atttattatg
     5281 taaatgatgt acctcattta ggtcatgctt atactaccat catagccgat actttagcaa
     5341 gattttatcg tttgcaagga catgaaacaa gatttctaac aggaacagat gagcatggac
     5401 aaaaaatcga agaagctgcc aaactaagaa attccactcc tcaagaatac gctgataaaa
     5461 tcagttttga atttaaaaaa ttatgggatg aatttgaaat cacctatgat atttacgcaa
     5521 gaacaactga tacaaggcat attgaattta ttaaagctat gtttttaaaa atgtggcaaa
     5581 aaggtgatat ttataaagat gaatacgaag gacactattg tatttcttgt gaaagctttt
     5641 ttactcaaag tcagcttatt aacgattgtt cttgcccaga ttgtggcaaa caaactagaa
     5701 ttttaaaaga agaaagctat tttttcaaac tttcaaaata tcaagataaa attttacaat
     5761 ggtatgaaga aaaagatccc atcttgccaa aaaacaaaaa aaacgaactt ataaattttg
     5821 tccaaaacgg ccttaaagat ctttccatta caagaacaag ttttgattgg gggattaaac
     5881 tgcctcaaga aattaatgat gataaacata ttatttatgt atggcttgat gcacttttta
     5941 tctatgtaag ctcacttgac tttcaaaaca agggagaaaa tgctaaattt tggcctgcgc
     6001 atgtgcattt agtaggaaaa gatatcttgc gttttcatgc catttattgg ccagcttttt
     6061 taatgagcgt ggatttgcct ttgccaaaat ttataggtgc acatggctgg tggactaaag
     6121 aaggtgaaaa aatgagcaaa tctaaaggca atgttgtaaa acctaaagaa gtagttgatg
     6181 cctatggaag tgaagctttt agatatttct tgcttagaga agtgcctttt ggtaacgatg
     6241 gggattttag cgaaaatatg ctgataaatc gtatcaatgc agagcttagc aatgaatttg
     6301 gaaatttact taatcgcatt ataggtatga gtacaaaata ttctcaagga aatatttcaa
     6361 aagaaggtgt tttaaaattt tacaatgccg aactaaatca agcaaaagaa cacttaaatt
     6421 tagcggtaga atttttagaa aacttacagt gtaatcgtta tttagaagaa ctttttaaag
     6481 ccttaagtgt ggcaaattta gccattagta aatacgaacc ttggagttta atcaaagaaa
     6541 acaaacacga acaagctaat gctttagtag cactttgtgc aaatatttta gccaaaacaa
     6601 gccttttatt aagccctact ctaccaaagt cctctcaaaa ggtggcctta gctttaaatt
     6661 ttgaaatttc gtctgcaaat tacacaaaaa tgatacttga taatgaactt ttagatttta
     6721 aagcaaatcc ttgcgaagct ttatttccaa aagtagaaaa agctctttta aaacaagaaa
     6781 ttaaagaaga acctaaaaaa gaagaaagtc ctaaaataaa aatcgatgat tttgcaaaaa
     6841 ttgaaatcaa agttgctaag gtacttgatt gtcaaaatat agaagggagt gaaaaacttt
     6901 taaaatttca actcgaactt gacgataaag aaatccgtca agtactctca ggcatagcaa
     6961 aatactataa ggccagtgat ttaatcggta aacaagtttg cgttataagc aatcttaaaa
     7021 aagctaaaat ttttggacat gaaagcgatg gtatgatact ttctgcaaaa agcggagata
     7081 aacttgtttt aatcgcccct gaacaacttg tgcaaaacgg ctctttagtg ggttaaaata
     7141 tgcaaattag caatttaggc gaactgttaa acgcaacact aattcatgaa ggtagtgttt
     7201 taagcgtgga aggttttgcc ataaatttaa acgaacttaa aacaggcttt gccttcttta
     7261 ataacgataa aaaagaaatt gcccaagctg taaaaaaagg cgcttatgct ataattacag
     7321 aaaatgacat tactattgaa gataaagaaa ttttttactt tagagtagaa aatctagaac
     7381 gagctcttgt aagattttta cgcttttttt gcgaagataa agaatgtgaa tttttacttt
     7441 ttaaatctta cgaactaagt ctttgcaagg ctttttattt taacatttta aaaggaaata
     7501 tttttgctga ttttgaaaaa ctaatcaaag caaaaaaggg tgaaattttt tgctactgtg
     7561 aagaaaatta cttaaataaa ctttgcacct attctcatag tctaaaagat gctaatttta
     7621 ccttattatc gcgatctagc ttctttttta caactttgat ttgtgaaaat ttatatttta
     7681 aaaatcttaa tttgcctttt ttttacgcaa atagtttt
//
LOCUS       DAPIWJ010000074         7604 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.075, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000074 DAPIWJ010000000
VERSION     DAPIWJ010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7604
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.075"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1786)
                     /locus_tag="RJ259_001349"
     CDS             complement(<1..1786)
                     /locus_tag="RJ259_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HDV7367044.1"
                     /translation="MKEFIQILKENDLLRVIEEPVDVDLEIAHLAYIEAKKGEKGKAL
                     LFKNPIDKKLNKQYKFPVLMNTFCNEKALNLAFGRDYEEVAEEISKLTKLHIPTSFKA
                     KMDFFMNLLSFKNIPPKRLKKNKALYDYEILNSLEELPILKTWEDDAGKFITMGQVYT
                     QNLDKTQNNLGMYRLQMSDKNELLIHWQIHKDGANFYHEYKNAGFKKMPVSIAIGGDP
                     LYIWCSQAPLPKGIFELLLYGFIKKTPAKITPCENGIFVPYDSDVVIEGYVDLEEFKI
                     EGPFGDHTGFYTPAELFPVMKVEKIYAKKDAIYQATVVGKPPLEDKIMGLGTERIFLP
                     LFQTSVPDLIDYNMPENGVFHNLILAKIDAKYPAHAQQIMHAFWGVGQMSFVKHAIFV
                     DKNAPSLKDYDALIPYMLDRFNTKKILISEGICDQLDHASPNSCFGGKAGLDACEEIQ
                     VEELEILEDEKLLELFKTKVELLNLKQFYKESKSPIVCILLDKKEKIEQSFDKLLEFK
                     KHFRILVFLDAENKLENSYMLVWRVVNNIDAKRDIFIKEERLGVDASAKGEAEGYLRA
                     WPKQTDCTKSVIEDLILRNILENNPDLFN"
     gene            complement(1783..2706)
                     /gene="hemC"
                     /locus_tag="RJ259_001350"
     CDS             complement(1783..2706)
                     /gene="hemC"
                     /locus_tag="RJ259_001350"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HDV7367045.1"
                     /translation="MKLIIATRKSQLALWQSEHVAQILKNTHQIEVLLEGFKTKGDVL
                     LDSPLAKIGGKGLFTKELEESMLRKEAHLAVHSLKDVPSFFPQGLVLAAVSKREQSND
                     AMLSQNYKDFLSLPKGAKIGTTSLRRKMQLLLLRPDLDIISLRGNVNSRIEKLKNNDF
                     DAIILAMAGIKRLNLDKQVNFVYEFSKDELIPAASQGALGIESINDEKILELLKCLND
                     ENALIETSIEREFIATLEGGCQVPIGINAELLGDEICVRAVLGLPDGSEILKDKRMIK
                     KNDFKGFGESLAKEFIAKGAKELLKKAESMI"
     gene            complement(2703..3092)
                     /locus_tag="RJ259_001351"
     CDS             complement(2703..3092)
                     /locus_tag="RJ259_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HDV7367046.1"
                     /translation="MNYKLSLSPLFVLEIIASILFIVFFGFGNFLFFILLSMIFGAVL
                     LGIFWKNMLEFQMGGLKDMLTQFSFVIAGFLLVFPGIITSVFGIFVFFFGIALKLITK
                     SKYQYTKQEYQNSNEEIIDVEIIEDRK"
     gene            complement(3089..4798)
                     /locus_tag="RJ259_001352"
     CDS             complement(3089..4798)
                     /locus_tag="RJ259_001352"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HDV7367047.1"
                     /translation="MMRFTKFYAPSLKEAPKDASLPSYIFLTRAGFVEQIGSGLYNFL
                     PLGKRVLDKIKNIVKEEMDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKE
                     NEFVLGPTHEEAMLSLVKNKITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKD
                     GYSFHANEEDLGREFELMYKTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNG
                     EDDILICENCDYAANVEAAKRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA
                     FYTIKAVVKKAIYENESKLVVFFIRGSDDLQEVKAQNACSALELVDASEEELEKAGLV
                     AGFIGFVGLKDIDFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKE
                     GDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSR
                     LLAVATEASHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLL
                     DDRNERFGVKMNDFELMGFPYALVVGKGLEKNEIELIQREGLIKELIKTDELMEILKK
                     KVL"
     gene            complement(4782..6080)
                     /locus_tag="RJ259_001353"
     CDS             complement(4782..6080)
                     /locus_tag="RJ259_001353"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HDV7367048.1"
                     /translation="MYYCISFTHKNTDIALREKLSFSNEAKKSEFLKIISTHENIEEC
                     LVISTCNRVEIVAFVKMACAEFIVKSLALLCDVDKDILLEKADIFEDSGAIHHLFSVA
                     SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLSRAVHSAFKCAAKVRNETQISKNS
                     ISVASVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAGAKVIILNRDLQKAKDL
                     CERLGVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLIEELSYKRYFFDIAVPR
                     DIDINENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETSEFFRYLNDLALMP
                     IIKAIRLQAKEYADKQLEIALKKGYLKKSDKEEARKLIHQVFKAFLHTPTVNLKHLQG
                     KMQSDTVINAMRYVFDLQNNLEGLNQYKCEFDMENNDEIY"
     gene            complement(6080..6973)
                     /locus_tag="RJ259_001354"
     CDS             complement(6080..6973)
                     /locus_tag="RJ259_001354"
                     /EC_number="2.5.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexaprenyl-diphosphate synthase"
                     /protein_id="HDV7367049.1"
                     /translation="MQKIDELIKQFLQELGYEPILNMLSNVKSGKKLRSKLLLTIADE
                     SEIAFKICAAIELIHLASLLHDDIIDESELRRGARSVNAEFGTKNALMLGDILYSKAF
                     YELSKMDARFASIISDAVVKLAIGELMDVDLGEKFNINKEAYLKMIYNKTAVLIEASA
                     RCGAILAGLYEKDFAEYGKNLGLAFQMIDDILDIKSDEKILGKPAMNDFKEGKTTLPY
                     IYLYENLQEQDRIYLQTLFKKDLNENEKEWLKTKFEEQKALEKAILEAKTYAKKARKA
                     IEKYDNNKLNDIIKAMIDREF"
     gene            complement(6987..7523)
                     /locus_tag="RJ259_001355"
     CDS             complement(6987..7523)
                     /locus_tag="RJ259_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exporting protein"
                     /protein_id="HDV7367050.1"
                     /translation="MFKISPCLICIFFIFSNVLASEPTFDYTYKFILKKDERASVQIK
                     EIGYEDKVQNFDFYWTLFDNTNIIVHSKFRKYPRQFVMSLRRNLDWVTQTLIPDYTNP
                     HIDRARLILEFSGYNKGLATFTVYIEDKESRLMVEFLDPRKKALQNPPQNNQVVPMIN
                     FNEPQVKPLTSKENNNSN"
     gene            complement(7526..>7604)
                     /locus_tag="RJ259_001356"
     CDS             complement(7526..>7604)
                     /locus_tag="RJ259_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2018 domain-containing protein"
                     /protein_id="HDV7367051.1"
                     /translation="NGDFIEERQNDIYIELGAKILGHEG"
BASE COUNT         2557 a         1475 c          828 g         2744 t
ORIGIN      
        1 tattaaaaag atctggatta ttttctaaaa tattacgcaa gatcaaatct tctatcacgc
       61 ttttagtgca atctgtttgc ttaggccaag ctcttaaata accctcagct tcacctttag
      121 cacttgcatc tactccaagt ctttcttctt tgataaaaat atctctttta gcatctatat
      181 tatttaccac acgccaaaca agcatataag aattttcaag cttattttca gcatctaaaa
      241 acactaaaat cctaaaatgt tttttaaatt ctaaaagttt gtcaaaactt tgttcgattt
      301 tttctttttt atcaagcaaa atacaaacta taggactttt actttcttta taaaattgct
      361 ttaaatttaa aagttctacc ttagttttaa aaagttctag taatttttca tcttctaaaa
      421 tttcaagctc ttcaacttgt atttcttcgc aagcatcaag tcctgcttta cccccaaaac
      481 aagaattagg tgaagcatga tctaattgat cacaaattcc ttctgaaatt aaaattttct
      541 ttgtattaaa acgatctaac atataaggaa ttaaagcatc ataatctttc aaagaaggtg
      601 catttttatc cacaaaaatt gcatgtttaa caaaactcat ttgccctact ccccaaaatg
      661 catgcataat ttgttgcgca tgagcgggat attttgcatc gatttttgct aagataagat
      721 tatgaaagac cccattttca ggcatattat aatcaattaa atcaggtact gaagtttgaa
      781 acaagggtaa aaaaattctt tcagtaccaa gccccatgat cttatcttct aaaggaggct
      841 ttcctacaac cgttgcttga tagatcgcat cttttttagc ataaattttt tctactttca
      901 tcacaggaaa aagttcagca ggagtgtaaa aacccgtatg atctccaaaa ggaccttcga
      961 ttttaaactc ttctaaatcc acataacctt caataaccac atcactatca taaggcacaa
     1021 aaataccatt ttcacaagga gtaatttttg caggagtttt tttaataaaa ccataaagta
     1081 aaagttcaaa aattccctta ggtaaaggtg cttgagaaca ccaaatataa agcggatctc
     1141 cacctatggc tatacttaca ggcatttttt taaaaccagc atttttgtat tcgtgataaa
     1201 aatttgcccc atctttatga atttgccaat gtattaaaag ttcattttta tcactcattt
     1261 gcaaacgata cattccaaga ttattttgag ttttatctaa attttgtgta taaacttgcc
     1321 ccatggtaat aaatttaccc gcatcatctt cccaagtttt tagtatggga agttcttcaa
     1381 gtgagtttaa aatttcataa tcatacaagg ctttattttt tttcagtctt ttaggaggaa
     1441 tatttttaaa acttaacaaa ttcataaaaa aatccatttt tgctttaaaa ctcgtaggaa
     1501 tatgaagctt ggtgagtttt gaaatttctt cagccacctc ttcataatca cgtccaaaag
     1561 ctaaatttaa agccttttca ttgcaaaaag tattcatcaa aacaggaaat ttatattgtt
     1621 tatttaattt tttatctata ggatttttaa ataataaagc cttccctttt tctccttttt
     1681 tagcttctat ataagctaaa tgagcgattt caagatctac atctacaggt tcttcaatta
     1741 cccttaaaag atcattttct tttaaaattt gaataaattc tttcatatca tactctcagc
     1801 tttttttaaa agttctttag cacctttagc aataaactcc ttagccaaac tctctccaaa
     1861 acctttaaaa tcattctttt taatcattct cttatctttt aaaatttcac ttccatcggg
     1921 tagtccaagt accgcacgca cacaaatttc atctcccaag agctctgcgt taatacctat
     1981 aggaacttga caacctcctt ctaaagtagc aataaattct ctttcaatgc ttgtttcaat
     2041 caaagcattt tcatcattta aacattttaa aagttctaaa attttttcat catttatgct
     2101 ttctatacct aaagctcctt gagaagccgc aggaataagc tcatctttgc taaattcata
     2161 aacaaaattc acttgcttat ctaagtttaa gcgtttaatt cccgccattg ccaaaataat
     2221 cgcatcaaaa tcattatttt ttaatttctc tatacgagaa ttgacattac cacgcaaaga
     2281 aataatatct aaatcaggtc ttaataataa aagctgcatc ttgcgtctaa gactagtagt
     2341 gcctattttt gcaccttttg gtaaagaaag aaaatcttta taattttgac ttagcatagc
     2401 atcattgctt tgctctcttt tgcttaccgc tgccaaaact aaaccttgag gaaaaaaact
     2461 aggcacatct tttaaactat gcactgctaa atgtgcttct tttcttaaca tactttcttc
     2521 aagttctttt gtaaaaagtc ctttaccacc aatttttgcc aaaggagaat caagcaaaac
     2581 atcgcctttt gttttaaaac cttctaaaag cacttcaatt tgatgtgtat tttttaaaat
     2641 ttgggctaca tgttcacttt gccaaagagc taattgactt tttcttgttg caataataag
     2701 cttcattttc tatcctctat aatttcaaca tcaataattt cttcattaga attttgatac
     2761 tcttgcttgg tgtattgata ttttgattta gttattaatt tcaaagcaat accaaagaaa
     2821 aatacaaaaa ttccaaaaac acttgtaata atccctggaa aaacaagtaa aaaccctgcg
     2881 ataacaaaag aaaattgtgt taacatatcc tttaagccac ccatttgaaa ttcaagcata
     2941 tttttccaaa aaattcccaa taaaaccgca ccaaaaatca tactcaaaag tatgaaaaat
     3001 aaaaaattac caaaaccaaa aaacactata aaaagtatac ttgcaataat ttcaagtaca
     3061 aataaagggc ttaaacttaa tttataattc ataacacttt ctttttaaga atttccataa
     3121 gttcatcagt ttttataagt tcttttatca aaccttctct ttggataagc tctatttcat
     3181 tcttttctaa tcctttacca acaactaacg cataaggaaa gcccataagt tcaaaatcat
     3241 tcattttaac cccaaaacgc tcatttctat catcaagcaa tacctctaat ccaagattag
     3301 ttaaatcctc ataaagctta ttagcaaatt ctaaagcctt ttcatctttg agatttgaaa
     3361 caataatttc aagcacaaaa ggagctaaag ttttattcca aatacatcct ttttcatcat
     3421 gacttgcttc agtagctaca gccaacaagc gtgaaacacc tatgccataa catcccatgt
     3481 aaaaaggctg acttttgcca ttttcatcta agaaatttgc attcatcgct ttggaatatt
     3541 tttgtcctag cttaaaaata tgccctactt ctataccttt actttgtttt aattttgctc
     3601 cacatttaac acagcaatcc ccttctttaa cttcaatcaa atctttaaaa cgatctttat
     3661 ttaaatttac aacatcaata ccgattaaat gataatcttt ttcattcgca cccataatca
     3721 tttgcttttc gttttcaagc tcaaaatcta tataaaaatc tatatctttt aatcccacaa
     3781 aacctataaa accagctact aagccagctt tttccaattc ttcttcgctc gcatcgacta
     3841 gttcaagggc actgcaagca ttttgagcct taacctcttg caaatcatca cttcctctta
     3901 taaaaaacac aactaatttg ctttcatttt cataaatagc tttttttacc actgctttaa
     3961 tcgtataaaa agcattgatt ttaaaaaatt gtgctaaaga atctatagtt ttaatatttg
     4021 gagtgtgaaa tttacttgca taatttgctt caggacgctc atcttgacaa gtttttttag
     4081 ctctttttgc agcttcaaca ttagccgcat aatcacaatt ttcacaaatt aaaatatcat
     4141 cttccccatt ttttgctaaa accataaatt ccttagagcc acttccacca atagccccac
     4201 tatcagcttc aactgctcta aaatcaagcc ccattctttg taaaatttga gaataagttt
     4261 tatacataag ctcaaactca cgccctaaat cttcttcatt agcatgaaaa ctatatccat
     4321 ctttcattag aaattcacga catcttaaaa gcccaaatct aggccttgct tcatcacgaa
     4381 atttaagtcc aatttgatat aaatgcaaag gaagttgttt atagcttgtg attttgtttt
     4441 ttaccaaaga aagcatagct tcttcatgtg ttggacctaa aacaaattca ttttcttttc
     4501 tgtctttaaa acgcaaaagt tcttttccaa aaacattgta acgcccactt tcttgccaca
     4561 aacttgcagg agtgataaaa ctaagattta cttcttgtgc tccagcctta tccatttctt
     4621 ctttaactat atttttaatc ttgtctaaaa ctctttttcc caaaggcaag aaattataaa
     4681 gtccgctacc aatttgttct acaaaacccg cacgcgttaa aaaaatataa ctaggtaaac
     4741 tcgcatcttt tggcgcttct tttaaacttg gtgcataaaa tttagtaaat ctcatcatta
     4801 ttctccatat caaattcaca tttatattga tttaaacctt caagattatt ttgcaaatca
     4861 aaaacataac gcatagcatt aatcactgta tcgctttgca ttttaccttg taaatgtttc
     4921 aaatttacag taggcgtgtg taaaaaagcc ttaaaaactt gatgaatcaa ctttctagcc
     4981 tcttctttat cagatttttt caaatatcct ttttttaacg caatttcaag ttgtttatct
     5041 gcatattctt tagcttgcaa gcgtatagct ttgataatag gcatcaaagc caaatcgttt
     5101 aaatacctaa aaaattcact tgtttcacga cctattatcc cataagccat acgagcttct
     5161 tgttctctta gtgctaaatt tttttgaacc acaatttcaa gatcatctac agcaaaaaca
     5221 gatatatttt cattttcatt gatatcaata tcccttggaa ctgcaatatc aaaaaaatac
     5281 cttttataag aaagttcttc tattaaagaa tttgtaataa tagcatttgg tgcattggta
     5341 gctgagaaaa aaaactcgta ttgatttaaa tattttttta aattttctaa actatcatat
     5401 tcgcttaaaa caccaagtct ctcacacaaa tctttagctt tttgtaaatc acgatttaaa
     5461 ataatcacct tagcacccgc agcaattaaa tgttttgccg caagttctcc catctctcca
     5521 gctccaataa caacagcttt tttttgcgtt aaatctgcaa gttcttttgc ttttgccacg
     5581 gcaacgctag ctacagaaat agaattttta gaaatttgag tttcattgcg taccttagca
     5641 gcacatttaa aagcactatg tactgctctt gaaaggtgta ctccacaaaa attatttttt
     5701 acagcaaaag caaaggcatc ttttaattgt cctgctatct gagtttctcc aaccaccaaa
     5761 ctatccaaag aacttgctac agaaaaaaga tggtggattg ctccactatc ttcaaaaata
     5821 tcagcttttt caagtaaaat atctttatca acatcacaaa gtaaagccaa agatttaaca
     5881 ataaactccg cacaggccat ttttacaaaa gcaacaattt caacacgatt gcaagtgctt
     5941 ataaccaaac attcttcaat attttcatga gtgctaatga tttttaaaaa ctcacttttt
     6001 ttagcttcat tggaaaagct taacttttcc cttaaggcaa tatctgtatt tttatgagta
     6061 aaagatatac aataatacat taaaattccc tatctatcat agctttaata atatcattaa
     6121 gcttgttatt atcatatttt tcaattgctt ttctagcctt ttttgcataa gttttagctt
     6181 ctaaaatagc tttttctaaa gctttttgtt cttcaaattt agtttttagc cattcttttt
     6241 cattttcatt taaatctttt ttaaataaag tctgcaaata tatcctatct tgttcttgta
     6301 aattttcata aagataaata taaggcaagg tagttttacc ctctttaaaa tcattcatag
     6361 caggttttcc aagaattttt tcatcactct taatatctaa aatatcatca atcatctgaa
     6421 aagcaagtcc taaattttta ccatattctg caaaatcttt ttcatataat ccagccaaaa
     6481 tagctccgca tctagcactt gcttcaatca aaacagctgt tttattatag atcattttca
     6541 aataagcttc tttattgata ttaaatttct ctcccaaatc aacatccata agttcgccta
     6601 tagcaagctt tacaacagca tctgaaataa tacttgcaaa tctagcatcc attttgctta
     6661 attcataaaa ggcttttgaa tacaaaatat cgcccaacat aagagcattt tttgtaccaa
     6721 attcagcatt aacagatctt gctccacgcc ttaattcact ctcatcgata atatcatcat
     6781 gtaataaact agcaagatgt atcaattcta tagccgcaca aattttaaaa gcaatctcac
     6841 tctcatctgc gatagttaat aataatttag agcgtaattt ctttcctgat tttacatttg
     6901 aaagcatatt taaaataggt tcatagccaa gctcttgtaa aaactgtttt attaattcat
     6961 ctattttttg cactatcttt tccttgttaa ttgctattat tattttcttt gcttgttaat
     7021 ggttttacct gaggttcgtt aaaattaatc ataggaacaa cctgattatt ttgcggtgga
     7081 ttttgtaaag ctttttttct cggatctaaa aattctacca ttaagcgaga ttccttatct
     7141 tctatataaa ccgtaaaagt tgccaaacct ttattataac cactaaattc taaaataagt
     7201 cttgctctat caatatgtgg attagtataa tcaggtatta aagtttgagt tacccaatct
     7261 aaatttcttc ttaaactcat cacaaattga cgcggatatt tgcgaaattt cgaatgtacg
     7321 atgatattag tattatcaaa caaagtccaa taaaaatcaa aattttgcac cttatcttca
     7381 tagcctattt ctttaatctg cacactagct ctctcatctt ttttaagtat aaatttataa
     7441 gtataatcaa aagttggttc agatgctaaa acattactaa aaataaaaaa aatacaaatt
     7501 aaacaagggc ttattttaaa caattttagc cttcgtgtcc taaaattttt gcgcccaatt
     7561 ctatataaat atcattttgc ctttcttcta taaaatcacc attt
//
LOCUS       DAPIWJ010000075         7439 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.076, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000075 DAPIWJ010000000
VERSION     DAPIWJ010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7439)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7439)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7439
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.076"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..599)
                     /locus_tag="RJ259_001357"
     CDS             complement(<1..599)
                     /locus_tag="RJ259_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDV7367052.1"
                     /translation="MLKVCNLSKFYELKKHWYLKKERHIIFDNVNFSLNENDNLIILG
                     KSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDKNKQRLLRKQIQYCFQDQKMALN
                     PYKKIKNLIQDGLENFNLQKNDDLILEFFDFFSLKKQILEQKSYELSGGEATRVGLIR
                     ALVLNPKLLILDEITSAFDIKTSKEILTFLYDYQQKNNIS"
     gene            complement(592..1302)
                     /locus_tag="RJ259_001358"
     CDS             complement(592..1302)
                     /locus_tag="RJ259_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7367053.1"
                     /translation="MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGK
                     ALVRLLDSNFTISFDELSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGN
                     LCHLVLKTHTKLKQKEIKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
                     LNQPQILICDEITASLDKENASKIISILKELKNTTALVCITHDLNLVNSLADEILMLE
                     KNSSNLYSLDEFLRYYNA"
     gene            complement(1299..2093)
                     /locus_tag="RJ259_001359"
     CDS             complement(1299..2093)
                     /locus_tag="RJ259_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7367054.1"
                     /translation="MILFKFLIILAPLIFLFLCALFAPFLASFDILSTHLENLHQAPN
                     FTYILGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALCYLFLARCFFYVFWMRI
                     LEFFLALPAFLLMMFFQSMITSDVFLMIFLIALIHWCFIARIIESELKRLENLDFYKA
                     NIVLGRTKFRAFFKDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGT
                     LLSESSKAVFIGAWWMILFPLLSLLLLFLPLLWLGNFLQKIWGIRS"
     gene            complement(2080..3024)
                     /locus_tag="RJ259_001360"
     CDS             complement(2080..3024)
                     /locus_tag="RJ259_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7367055.1"
                     /translation="MLKRLVFSIFIAFFSTFLCFVLLHFSKGSIAYANGVNSQSKEFV
                     QRIEQNLGLDKPLLEQYKIWLFKALKGDLGVSFLSGESVLKLIKERIFNTFILGFSAL
                     MLLFLLSVFLALLGYYYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPV
                     MGSSDIGFEDDFLNRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARA
                     LREKDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYKGLGSLLFKSIIFKDY
                     PIVLALIFFSVLLAAFFTFLSDIVARILNPRLRRLDFV"
     gene            complement(3024..4559)
                     /locus_tag="RJ259_001361"
     CDS             complement(3024..4559)
                     /locus_tag="RJ259_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDV7367056.1"
                     /translation="MLRWFVLLFLLFLNLEAKIPKDTLIIAVENEIARINPAYSEDHD
                     AVINLVFSGLTRFDENMSLKPDLAKSWDISKDGLVYDIFLRDDVLWHDGVKFSADDVK
                     FSIEAFKNPKNNSSIYVNFEDIKSVEILNPSHVKITLFKPYPAFLDALSIGMLPKHLL
                     ENENLNTSSFNQNPIGTGPYKFVKWKKGEYVEFKANEHFYLDKVKTPRLIIKHIFDPS
                     IASAELKNGKIDAALIDVSLLNIFKNDENFGILREKSADYRALMFNLDNEFLKDLKVR
                     QALNYAVDKESIVKNLLHDYAFVANHPLERSWANSKNFKIYKYDPKKAEDLLVSAGFK
                     KNKDGNFEKDGKILEFEIWAMSNDPLRVSLAGILQSEFRKIGVVSKVVAKPAGSFDYS
                     KVDSFLIGWGSPLDPDFHTFRVFESSQDSALNDEGWNFGHYHDKKVDIALQKARNTSN
                     LEERKKYYKDFIDALYENPPFIFLAYLDFALVYNKDLKGIKTRTLGHHGVGFTWNVYE
                     WSK"
     gene            complement(4669..7314)
                     /locus_tag="RJ259_001362"
     CDS             complement(4669..7314)
                     /locus_tag="RJ259_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HDV7367057.1"
                     /translation="MIIAKNEDEIKQIIQLANTYKTPITFRAAGTSLSGQSSCDGVLV
                     VIKFAFKKIKINKDANEITLGCGVVGIHANESLAFLKKKIGPDPATINSALIGGIINN
                     NSSGMCCGTKDNSYKTLRSIRVILANGSMLDTSDALSVARFKDENKKLINELREIKEE
                     INANKELKDLIIKKFKIKNTTGYSLNAFVDYDDEIDILAHLLIGSEGTLGFVSEVKLA
                     VLDDLEFKACALLFFDNINNAANTIKEFAKVDFVSSAEIMDYASLKAASTYDELRDIL
                     ADIKEGNTCVLIQSEHSNELKLDENINKIKEISKLAYKSYFSKNKAEYDLWWKIRKAL
                     LPIAASLRKAGSTVITEDVCFNIEDLADGIKSIQELFYKYGFGDNGIIFGHALAGNIH
                     FIITPDLNNKLEFDNFSNLVKEMSNIVASYGGSIKAEHGTGRMVAPFVEVEWGKQAYL
                     INKKIKSIFDKDSLFNPDVIISDDKDIYKKNIKQVSWIDEKLNTCMECGFCERFCPSN
                     EYTITPRQRIAILREIKRLESLNDDESKAKLKDIKKYYNHLVDSSCAACGVCSFSCPL
                     GINFADFSLKYRKNNIGFISKILGNLAYKNHEKTLKIAKFSLSIANKFDNLSLDNKLE
                     KASNFLSIIPRTRAYLPKVNDYELKSHKRVCNVVYFTSCLNKSFKPNEKMHDKRSLQE
                     VFESLCKKANIGIIYAPNDLCCGKAYENFQDIQDKNIQKINDFLSNIDSPIVLDHSAC
                     SAKLISDHSKYEIYDLSEYLLKFIAPKLRIDKINENVGLYIMCAARKLGLNENIIKLT
                     KLCTNGKVLIDNDTYCCGFAGYKGFFKPQLNISATKGFKKFYAKTNIKRGFSTSSTCE
                     IGLSDATGISWQHIAYLLDECSEAI"
BASE COUNT         2751 a         1337 c          823 g         2528 t
ORIGIN      
        1 gaaatattat ttttttgctg atagtcatat aaaaaagtta aaatttcttt agaagtttta
       61 atatcaaacg ctgaagtaat ttcatctaaa atcaacaatt taggatttaa aaccaaagca
      121 cggataagac ctacacgtgt ggcttctcct ccgcttaact cataggattt ttgttctaaa
      181 atttgttttt ttagactaaa aaaatcaaaa aattctaaaa tcaagtcatc attcttttgt
      241 aaattaaaat tttccaaacc atcttgtata agatttttga tttttttata agggtttaaa
      301 gccatttttt gatcttgaaa gcaatattga atttgctttc ttaaaagtct ttgtttgttt
      361 ttatcaagct tgtgtaagtt aagattttca taccatacct caccctcact tggatcttct
      421 aaaaaacaaa gaattctagc taatgtgctt ttacctgcac cacttttacc taaaattatt
      481 aaattgtcat tttcatttaa agaaaaattg acattatcaa aaataatatg tctttctttt
      541 tttaaatacc aatgcttttt aagctcataa aacttactta aattacaaac tttaagcatt
      601 ataatacctt aaaaactcat ctaagctata taaatttgaa ctattttttt ctagcataag
      661 aatttcatct gctaaagaat ttaccaaatt taaatcatga gtgatacaaa ctaaggctgt
      721 agtatttttt aattctttta aaatcgatat aatcttagaa gcgttttctt tatccaaaga
      781 agctgtgatt tcatcacaaa ttaaaatttg gggttgattt aataatgcca aagctaggct
      841 cacccttctt gccataccca aacttaattc attagcataa gaatgccaca aacgatcaag
      901 attttcaaat cctaattttt gaaaataaga aaaagcgtaa tcttttattt ctttttgttt
      961 taattttgta tgagttttta aaacaagatg acataaattt ccaatatcca aataaggata
     1021 aagactaagc tctgcatctt gcaaaacaag tgccacttta gaacgaaaat ttctaagctc
     1081 ttctttatta aaattaaaaa tacaagaatt atgaaaactt aattcatcaa aacttattgt
     1141 gaaattagaa tctaaaagtc ttaccaaagc ttttcctaac aaacttttgc ccactccact
     1201 ttgtcctagt atcattaaag ttttgcctgt ttttatatct aaattaatat ccttaagtaa
     1261 taaattattc ttcaaactga tatttaaatt tcttaccttc aagatcttat accccaaatt
     1321 ttttgtaaaa aattacccaa ccataaaaga ggtaaaaaca acaaaagcaa gcttaaaagt
     1381 ggaaaaagta tcatccacca agcgcctata aaaactgctt ttgaagactc actcaaaaga
     1441 gtacctaaag ttggaatttc aaatcctaaa cccagtccaa aaaaactcaa agtagcttct
     1501 gtggctatag catgaacgat attaaatata aaaagtgtaa aaatcagtgt ttttaaagca
     1561 ggtattaaat ctttaaaaaa agctctaaat ttagttcttc caagcactat atttgctttg
     1621 taaaaatcta aattttcaag tctttttaat tcactttcta taattcttgc tatgaaacac
     1681 caatgaatta aagcgattaa aaaaatcatc aaaaacacat cagaagttat catactttga
     1741 aaaaacatca taagtaaaaa agcaggcaag gctaaaaaaa actctaaaat acgcatccaa
     1801 aaaacataaa aaaaacatcg cgctaaaaac aaatagcaca aagcaaagat aatagacaat
     1861 aaagatccac caacacctat aatcaaagaa tttctcaaag caaaaagcaa acgagaaaac
     1921 aaatctctgc ctaaaaaatc agtccctaaa atataagtaa aattaggagc ttgatgcaaa
     1981 ttttctaaat gagtgcttaa aatatcaaaa gaagctaaaa aaggtgcaaa caaggcgcat
     2041 aaaaacaaaa aaattaaagg cgcaagaatg ataagaaatt taaacaaaat caagccttct
     2101 taatctagga tttaaaatcc tagctacaat atcacttaaa aatgtaaaaa atgctgcaag
     2161 caaaacacta aaaaatataa gcgcaagcac aataggataa tctttaaaaa taatactttt
     2221 aaaaagtaaa gatccaagcc ccttgtaagc aaagacactt tctaccacat aagttcccat
     2281 cataaaactt aaagcacttc ccccaaaata agccacaata ggacttaaag aatatttcaa
     2341 aactaaaaaa taaatatctt tctcccttaa agccctagcg tataaatttt gaataaaaat
     2401 ttgagaaaaa ctttcattga taaaatttct agcaatcctt aaaaataacg ccaaatgtga
     2461 taaaacgagc accaaaacag gcaaaatcaa atgctctaaa cgatttaaaa aatcatcttc
     2521 aaagcctata tcactacttc ccataacagg caaaattttc caaaaaattc caaaaatcaa
     2581 aacaaacaat aaagccaaaa caaaaggagg taaagcaaaa aaattaaaag ctaaaaaagt
     2641 gatgatttta tctataaaac tttctttata ataatatccc aaaagtgcca aaaaaacact
     2701 gagcaaaaat aaaagcatta aggcactaaa acccaaaata aaagtattaa aaattctttc
     2761 ttttataagc tttaaaacac tttctccact taaaaaagaa acccctaagt ccccttttaa
     2821 agccttaaaa agccaaattt tatactgctc tagcaaaggc ttatcaagcc ctaaattttg
     2881 ttctattctt tgaacaaatt ctttactttg tgaattaact ccattagcat aagctatact
     2941 gcctttacta aaatgaagta aaacaaaaca taaaaaagtg ctaaaaaatg ctatgaaaat
     3001 actaaaaact aagcgtttta gcactattta ctccactcat aaacattcca agtaaaaccc
     3061 actccatgat gacctaaagt ccttgttttg atacctttta aatctttatt ataaactaaa
     3121 gcaaaatcaa gataggctaa gaaaataaaa ggaggatttt catacaaagc atctataaaa
     3181 tctttataat atttttttct ctcttctaaa tttgaagtat ttcttgcttt ttgcaaggct
     3241 atatccactt ttttatcatg ataatgtcca aaattccaac cctcatcatt taaagcacta
     3301 tcttgcgaac tttcaaatac cctaaaagtg tgaaaatcag gatctaaagg acttccccag
     3361 cctattaaaa aactatctac tttagaataa tcaaaacttc cagcaggttt agccaccacc
     3421 ttgcttacaa ctcctatttt tctaaattcg ctttgcaaaa ttccagctaa acttaccctt
     3481 aaaggatcat tgctcatcgc ccaaatttca aattctaaaa ttttcccatc tttttcaaaa
     3541 tttccatctt tatttttctt aaaacctgca ctcacaagca aatcctcggc ttttttagga
     3601 tcatatttgt aaattttaaa attcttagaa tttgcccaag aacgctctaa agggtgatta
     3661 gctacaaaag cataatcatg taaaagattt tttactatac tttctttatc gactgcgtaa
     3721 tttaaagctt gtcttacttt tagatctttt aaaaattcat tatctaaatt aaacattaaa
     3781 gcccgataat cagccgattt ttcacgcaaa attccaaaat tttcatcatt tttaaaaata
     3841 tttagcaaag aaacatcgat taaagctgcg tctatcttgc catttttaag ctcagcacta
     3901 gctatagaag gatcaaaaat gtgttttata ataagtcttg gagtttttac cttatcaaga
     3961 taaaaatgtt cattggcttt aaattcaaca tattcacctt ttttccattt tacaaattta
     4021 taaggacctg tacctatagg attttgatta aaagagcttg tgtttaaatt ctcattttca
     4081 agcaaatgtt taggaagcat tcctatgctt aaagcatcta aaaatgcagg ataaggttta
     4141 aagagtgtga tttttacatg agaaggattt aaaatttcca cacttttaat gtcttcaaaa
     4201 ttgacataaa tagaagaatt gtttttagga tttttaaagg cttctatact aaatttcaca
     4261 tcatcagcac taaatttgac tccatcatgc cataaaacat catctcttaa aaaaatatca
     4321 taaacaagcc cgtctttact aatatcccaa gacttagcca aatcaggttt taaactcata
     4381 ttttcatcaa aacgcgtaag ccctgaaaat acaagattaa tcactgcatc atgatcctcg
     4441 ctataagcag gatttatcct tgcgatttca ttttcaactg ctataataag tgtatctttt
     4501 ggaattttag cctcaagatt caaaaacaat aaaaatagta aaacaaacca tctaagcact
     4561 tgtaactcct caaatttaaa attttaaaga attataaaat aaaaaataag aagccacaag
     4621 ctctatgggg ggataatttg ctttaaatta tggagtttta tttatcaatt aaattgcttc
     4681 actgcattca tccaataaat acgctatatg ctgccaagat atacccgtag catcgcttaa
     4741 tcctatctcg caagtgcttg atgtactaaa cccgcgctta atatttgttt tggcataaaa
     4801 ttttttaaag ccttttgtag cactaatatt taattgaggc ttgaaaaagc ccttgtatcc
     4861 agcaaaccca caacaatagg tatcattatc tattaatact tttccattcg tacatagctt
     4921 tgtaagctta attatatttt catttaaacc aagctttcta gcagcacaca tgatatataa
     4981 tcctacattc tcattgattt tatcaatgcg taacttggga gcaataaatt ttaataaata
     5041 ctcgcttaaa tcataaattt cgtactttga atgatcacta attaacttag cactacaagc
     5101 actatgatct aacactatgg gtgagtctat attgcttaaa aagtcattga ttttttgtat
     5161 atttttatct tgaatatctt gaaaattctc ataagcctta ccacaacata aatcattggg
     5221 tgcataaata atgcctatat ttgctttttt acacaagctt tcaaatactt cttgcaaact
     5281 tcttttatca tgcatttttt catttggttt aaagctttta ttaagacagc ttgtaaaata
     5341 aaccacattg caaactcttt tatgactttt tagctcataa tcattcacct taggcaaata
     5401 cgccctagtt cttggtataa tgctaagaaa attgcttgct ttttcaagct tattatcaag
     5461 acttaaatta tcaaatttat ttgcgatact taatgaaaat ttagcaattt ttagagtttt
     5521 ttcatgattt ttatatgcta gatttcctaa aattttagat ataaatccta tattattttt
     5581 tctatatttt aatgaaaaat cagcaaaatt aatccccaaa ggacatgaaa aagagcacac
     5641 cccacaagca gcacaagagc tgtctactaa atgattgtaa tattttttaa tatcctttaa
     5701 ttttgctttt gactcatcat catttaagct ttcaaggcgt ttaatctctc gtaagatcgc
     5761 aattctttgt cttggagtaa ttgtatattc atttgatgga caaaatcttt cgcaaaatcc
     5821 acattccata caggtattta atttctcatc aatccaactg acttgtttga tatttttctt
     5881 ataaatatct ttatcatcgc taatgattac atcgggatta aataaactat ccttatcaaa
     5941 gatacttttg atttttttat tgatcaaata agcttgctta ccccactcta cctccacaaa
     6001 aggtgccacc atacgccctg tgccgtgttc agcttttata cttccaccat aagaagctac
     6061 tatattagac atttctttaa ctagatttga aaaattatca aattcaagct tattgtttaa
     6121 atccggtgtg ataataaaat ggatattgcc tgctaatgca tggccaaaaa tgattccatt
     6181 atcaccaaag ccatatttat aaaacaattc ttgaatgctt ttaattccat cggctaaatc
     6241 ctcgatatta aaacacacat cttcagtaat taccgttgaa cctgcctttc taagactagc
     6301 tgctataggc aagagtgctt ttctaatctt ccaccataaa tcatattcgg ccttattctt
     6361 gctaaaatat gacttataag ccagtttgga aatttctttt attttattta tattttcatc
     6421 aagcttaagc tcattactat gctcactttg gatcaataca caagtattgc cctctttaat
     6481 atcagctaaa atatctctta actcatcata agttgatgca gcttttaaac ttgcatagtc
     6541 cattatttca gcagaactta caaaatcaac tttagcaaat tcttttatag tgtttgcagc
     6601 attattgata ttatcaaaaa acaataaagc acaggcctta aattccaaat catccaaaac
     6661 agcaagctta acttcgctta caaatcccaa agtcccttca gagccaataa gcaagtgtgc
     6721 taaaatatct atttcatcat cataatcaac aaaggcatta aggctataac ctgtggtgtt
     6781 tttgatttta aattttttga ttattaaatc ttttaattct ttattggcat taatctcttc
     6841 tttgatctct ctaagttcat taattaattt tttattttca tctttaaatc gagccacact
     6901 taaagcatcg ctggtatcaa gcatactacc atttgccaaa atcaccctaa tacttcttaa
     6961 ggttttatag ctattatcct tagttccaca gcacattccg cttgaattgt tatttataat
     7021 ccctccaatt aaagctgaat ttatagtagc tggatcaggt cctatttttt tcttcaaaaa
     7081 agcaagactt tcattagcat gaatgcctac tacaccgcat cctaaagtaa tttcgttagc
     7141 gtctttgtta atttttattt ttttaaaggc aaatttaatc actacaagta ctccatcaca
     7201 agagctttgt ccacttaaac ttgtacctgc tgctctaaat gttataggag ttttataagt
     7261 atttgctaat tgaataattt gcttaatttc atcttcattt ttagcaataa tcactatttt
     7321 tggaatataa aaataacacg acgcatcaat gccataagca tagcatctag cataatcatt
     7381 aaaaattcta tccttaaaaa tatacttagc ctctttataa aaagctttaa aatttgcca
//
LOCUS       DAPIWJ010000076         7292 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.077, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000076 DAPIWJ010000000
VERSION     DAPIWJ010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7292)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7292)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7292
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.077"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            67..1140
                     /gene="ispG"
                     /locus_tag="RJ259_001363"
                     /gene_synonym="gcpE"
     CDS             67..1140
                     /gene="ispG"
                     /locus_tag="RJ259_001363"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HDV7367058.1"
                     /translation="MEYKRFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQI
                     NRLYFAGANIVRLACLDMADARALKEIKAKSPLPLIVDIHFNHNLAVYCAEFIDGVRI
                     NPGNIGSKENIKEVVKACKERGIPIRIGVNHGSIEKQFSDKFGYGVDAMLESAMYNIK
                     LLEDLDFFDIKISMKTSDAQKTIEAYERLRPLCDYPFHLGVTEAGTKFHSTVKSSIAL
                     GNLLLKGIGDTMRVSMTGELEEEIRVARAILQDSGVQKSGVNIISCPTCGRIQSDLLS
                     AIKIVEEKTKHIKEPLNISVMGCVVNALGEAKGADVAIAFGKNQGLVIRHGEVVAKLK
                     ESELVDRFLAEVEDEVKSRAVKE"
     gene            complement(1170..1868)
                     /gene="flgH"
                     /locus_tag="RJ259_001364"
     CDS             complement(1170..1868)
                     /gene="flgH"
                     /locus_tag="RJ259_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HDV7367059.1"
                     /translation="MKKVLFYVLPFAFFGCSATVDPQISMKPPAYVEELAPKQSNNIE
                     SAPGSLFGKGDNPLFSDKKAMNVNDLVTVVIQESTTQSTQANKATSRTNTSNLGGGAL
                     TGSSGVVANALNKVNAYSNIGFQTNSSNNYTGTGSQSRNESFNTTISTRVIKILSNGN
                     YFIEGSRELLINGEKQIIQLSGVIRPYDIGQDNTIDSKYIADAKILYKTEGEVDRSTR
                     KPWGSKVIEAIWPF"
     gene            1958..3463
                     /gene="pta"
                     /locus_tag="RJ259_001365"
     CDS             1958..3463
                     /gene="pta"
                     /locus_tag="RJ259_001365"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HDV7367060.1"
                     /translation="MMANLYLMRSRSDELNTIISTNLLKNYSKIYKNIAIYCPVIYIH
                     RVPVLQGWLEEFNINQTVKSAYGFTFREAMEEFSKDPHNFFNVILEEYEELKRKYDFV
                     LVNSFCEFGILDGFDLSIKLAKNLNTPIAAIINDEDKLIAQKYFDHALDGRNYVLINE
                     NFNFEEVQKLKEYDFITPHRFKYELIKQSIKNKKTVVLPESNDERILKAAEILLKSKV
                     VDLILLGDEEKIKQDATRLSLDLSAMQIMNPLNSEYNQEFTSILYEARKSKGMSLEEA
                     KMLVQDKTYFGTLLIHTGKADAMVSGASTTTAETIRPALQLIKTKEGISSVSGIFFMG
                     LEDQVLAFADCAVNPSPTAEQLATSAYVSAMTAKSFGLEPRIALLSYSSGDSGKGESV
                     DLVKEALKIAKEKYPELNIDGPMQFDCAYDPKTAAKKMPNSKIAGHANVYIFPDLNAA
                     NICYKAVQRTANALAIGPILQGLKKPVNDLSRGCLVDDIVDTVILSAIQAQ"
     gene            3477..4667
                     /locus_tag="RJ259_001366"
     CDS             3477..4667
                     /locus_tag="RJ259_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HDV7367061.1"
                     /translation="MKILVLNSGSSSIKFKFFDNKIVKASGLVEKIGEQNSKVILKNV
                     LNNESFERELTINNHEEGLSIVNELFKESGILADLNALDGCGHRIVHGGRNLSEHCLV
                     DDYVLKEIDRVSIFAPLHNPAHLAGIKTMIKAAPSVANAAIFDTAFHRTIPDFAYMYA
                     LPYDFYDKHNIRRYGFHGTSHAYVSSRAAKFLQKDQNELNVISAHLGNGASVCAIEKG
                     KSVDTSMGFTPLEGLIMGTRCGDLDPAILPFISHLKGLTIEEIDTLMNKKSGVYGICG
                     YNDFRDIEREIEQGNDKARLALDMFCYRLVKYIGSYFAVLPKTDAIIFTGGIGENDSL
                     VRQKVCERLAHLGIELDFELNKQRISGERMINHANSKLKVLVIPTDEELEIARITEEL
                     IGKN"
     gene            complement(4695..>7292)
                     /locus_tag="RJ259_001367"
     CDS             complement(4695..>7292)
                     /locus_tag="RJ259_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HDV7367062.1"
                     /translation="RDYKTLSVEHLGTIYEGLLSYFFEIANEDIYYVSYKEKSKEIEC
                     YFDNYDFKILEKSKKVEKYTFYKKGQIYLKNSSNSRKSTASFYTPQSIANFLIQSALK
                     DKLNNENILKFKILDNACGSGHFLVGILNAITHIVLSDFDHFTNLKELYEEEKENILN
                     YIKDFVQDYEVDESDVLKRLLLKRIIYGVDLNPFSIELTKLSLWIDSFIFGTPLSFIE
                     HHIKCGNALINSNLSDFKDLIKQNSSNLFTNSITQEFEILQEVFEKLDNLKDTNEEQI
                     KQSKQIYQNEITPKLNKLNLYLNYINTLHFVNKEELQILKALSQDDIQNLSQNEQAKA
                     VISKYQKEFNFFNYELEFPEIVENQVFKGFDIIIGNPPWDKTKFSDDDFFPQYKSDYR
                     SLIASKKKEIQDNLLAKDYIKQNYEKQKAYINDLSKYYKKAYPLNKGSGDGNLFRLFV
                     EKNLSLLKQDGNLAYVLPSALMFEDGSLTLRKEILENKTLEYFYSFENRQAIFVDVHK
                     SYKFALMQVKNTQANHTHKIKTMFYKTDMNSLKNKDEILTLSLKDIKKLSPTHLALME
                     LKDKQALEILRKCYNAFQNLSFDYIDFVNELHMTNDKDLFIEEFREGLLPLFEGKMIH
                     QFDTNFSQATYFLEKAKFDERLKSKELSRTKKATGKELNPKLIKYDREFFRLGYRTIA
                     SDTNERTLIASLLPKNCGCGNSVYSNIPKQYIVKDDAICMDIVPYERILFVLALFNSL
                     VVDFIIRNMVQINVSKTYLERIPLPQPSDEEIQNNEIYKTLAKNALLLQLYNDKNHHF
                     DELKQEFNIKNEEIPKTKKAYDILRAKNDLLVKKLYDLSDDEFSYMISTFKVLNEKQS
                     EYTTLLKTI"
BASE COUNT         2422 a          995 c         1219 g         2656 t
ORIGIN      
        1 aataaacttt aattaaagca ataaaaagtt aaaatttgat attaaaattt ttcaaagagt
       61 gaagttatgg agtataaaag atttaaaacc agacaaatca aagtaggaaa tgttttaata
      121 ggcggtgatg cacccatttc agttcaatct atgcttttta ctaaaacaag agatatagaa
      181 ggttctttag aacaaatcaa tcgtctttat tttgcaggag caaacatagt gcgtttggcg
      241 tgcttggata tggctgatgc aagggcttta aaagagatta aagctaaaag tcctctacct
      301 ttaatcgtag atattcattt taatcataat ttggctgtat attgtgctga atttatcgat
      361 ggcgtgcgta taaatcctgg caatataggc tctaaagaaa atattaaaga agtggtaaaa
      421 gcatgtaaag aacggggtat ccctatacgc atcggtgtaa atcacggctc catagaaaaa
      481 caatttagtg ataaatttgg ttatggtgtc gatgccatgc tagaaagtgc gatgtataat
      541 atcaagcttt tagaggattt agactttttt gatattaaaa tttccatgaa gacttcagat
      601 gctcaaaaaa ctatagaagc ttatgagaga ttaagaccgc tttgtgatta tccttttcac
      661 ttaggggtaa ctgaagcagg aactaaattt catagcactg taaaaagttc tatagcttta
      721 ggaaatttac ttcttaaagg tataggcgat actatgcgtg tttctatgac gggtgagctt
      781 gaagaagaaa ttcgtgtagc aagagcaatt ttgcaagata gcggagtaca aaaaagcgga
      841 gtaaatatta tttcatgtcc aacttgcggt aggattcaaa gtgatttgtt aagtgcgatt
      901 aaaatcgtag aggaaaaaac caagcatata aaagaacctt taaacatcag tgtcatgggt
      961 tgtgtggtaa atgctttagg cgaagccaag ggcgctgatg tggctatagc ctttgggaaa
     1021 aatcaaggac ttgtcataag acatggtgaa gttgtagcta aattaaaaga aagtgaactt
     1081 gtagatagat ttttagctga agttgaagat gaggttaaaa gtagggctgt aaaagaataa
     1141 aagcctaaaa gcaaggttta accttgcttt tagaatggcc atatcgcttc tataacttta
     1201 ctaccccaag gttttcttgt gcttctatcc acttctcctt ctgttttata tagaatttta
     1261 gcatctgcta tatatttact atctatagta ttgtcttgac cgatgtcata aggacgaata
     1321 acaccgctta attgtatgat ttgcttctct ccgttgatta aaagctctct tgaaccttcg
     1381 ataaaataat taccatttga taaaatttta attacacgtg ttgaaattgt agtattgaaa
     1441 ctttcatttc tactttgtga gcctgttcct gtgtagttgt ttgaactatt ggtttgaaag
     1501 cctatattag aataagcatt gactttatta agagcattag ctaccactcc tgaacttcct
     1561 gttaaagcac ctccgcctaa atttgaggta ttagttctac ttgttgcttt attagcttgt
     1621 gtgctttgag tggtactttc ttgtataaca actgtaacta aatcatttac attcatagct
     1681 tttttatctg aaaataaagg attatcccct ttgccaaaaa gcgatcctgg tgcactttct
     1741 atattattac tttgttttgg tgcaagttct tctacataag caggtggttt cattgaaatt
     1801 tgcggatcaa ccgttgcaga acaaccaaaa aatgcaaacg gtaacacata aaataaaact
     1861 tttttcattt tcgtccttta aaatatgaat ttttattttt ctttgttaaa attagaaaaa
     1921 gcaaagagtg ttccacattt ataaattcaa ggagaaaatg atggcaaatc tttatttgat
     1981 gagatctaga agtgatgagt taaatactat tattagtaca aatttgctta aaaattatag
     2041 caaaatttac aaaaatatcg caatttattg ccctgtgata tacatacatc gcgttcctgt
     2101 tttgcagggt tggttggaag aatttaatat caatcaaacc gtaaaaagcg cttatggttt
     2161 tacctttaga gaggcaatgg aggaatttag caaagatcct cataattttt ttaatgttat
     2221 tttagaagaa tacgaagagt taaaacgcaa atacgatttt gtgcttgtaa atagtttttg
     2281 cgaatttgga atacttgatg gatttgatct tagtataaaa ttggctaaaa atcttaatac
     2341 ccctatcgct gctattatta acgatgaaga taaacttata gctcaaaaat attttgatca
     2401 tgctctagat ggtcgtaatt atgttttgat taatgaaaat tttaattttg aagaagtgca
     2461 aaaacttaaa gaatatgatt ttataactcc tcatcgtttt aaatatgaat taatcaaaca
     2521 aagtataaaa aataaaaaaa ccgttgtttt gccagaaagt aatgatgaga gaattttaaa
     2581 agctgctgaa attttattaa aaagtaaagt tgttgatctt attttattgg gcgatgaaga
     2641 aaaaatcaaa caagatgcta ctagattaag tcttgattta agtgctatgc aaattatgaa
     2701 tccacttaat tcagaatata atcaagaatt tacttctatt ctttatgaag caagaaaatc
     2761 taaaggcatg agtttagaag aggctaagat gctagttcag gataaaactt attttggaac
     2821 tttgcttata catactggaa aagctgatgc tatggttagt ggagcatcaa ctactacagc
     2881 tgaaacgatt cgcccagcat tacagcttat taaaaccaaa gaaggtatta gttccgtttc
     2941 aggaattttc tttatggggc ttgaagatca agttttagct tttgctgatt gtgctgtaaa
     3001 tccaagtcca actgccgaac agcttgcaac tagtgcctat gtaagtgcta tgactgctaa
     3061 atcttttgga cttgaaccaa gaatagcttt gctttcttat tctagtggtg atagcggtaa
     3121 aggagaaagc gtagatcttg taaaagaagc attaaagatt gctaaagaaa aataccctga
     3181 gttaaatata gatggtccta tgcagtttga ttgcgcttat gatccaaaga ctgcagcaaa
     3241 gaaaatgcca aattctaaga tagcaggcca tgcaaatgta tatatttttc ctgatcttaa
     3301 tgcagcaaat atttgttaca aagcagttca aagaactgct aatgctttag caatcggtcc
     3361 tattttgcaa ggtcttaaaa aacctgttaa tgatttaagt cgtggatgtt tggtagatga
     3421 tattgtagat actgttattt taagtgctat acaagctcaa tagaaaggaa taataaatga
     3481 aaattttagt tttaaattcg ggttcttcat cgattaaatt taaatttttt gataataaaa
     3541 tcgttaaagc gagtggctta gtagagaaaa tcggagagca aaattcaaaa gttatattaa
     3601 aaaatgtttt aaataatgaa agttttgaaa gagaattaac gataaataat cacgaagaag
     3661 gccttagtat agttaatgag ctttttaaag aatcaggaat tttagcagat ttaaatgcgc
     3721 ttgatggctg cggtcatcgt atagttcatg ggggaagaaa tttaagcgag cattgtttag
     3781 tggatgatta tgttcttaaa gagatagata gggttagtat ttttgctcct ttgcataatc
     3841 ctgcgcattt agcaggtata aaaacaatga tcaaagctgc acctagtgtt gctaatgcag
     3901 ctatttttga tacagctttt catcgcacta tacctgattt tgcttatatg tatgctttgc
     3961 cttatgattt ttatgataag cataatatta gaagatatgg ttttcatggg acttctcatg
     4021 cttatgttag ttctagagcg gcaaaatttc ttcaaaaaga tcaaaatgaa ttaaatgtca
     4081 tctctgctca tcttggaaat ggtgcaagtg tatgtgctat agaaaaaggt aagagtgtgg
     4141 atacttctat gggctttact ccgcttgaag gacttattat gggaacgcgt tgtggagatt
     4201 tagaccctgc tattttacct tttattagtc atcttaaggg tttaactata gaagaaatag
     4261 atactctaat gaataaaaaa agcggagtat atggaatttg tggttataat gattttagag
     4321 atatagaaag agagatagaa caaggtaatg ataaagcacg cttggctctt gatatgtttt
     4381 gttatcgtct tgttaaatat ataggatcct actttgctgt gttgccaaaa accgatgcta
     4441 ttatttttac aggtggcata ggagaaaatg atagtttggt tcgacaaaaa gtatgtgaga
     4501 gattagctca tcttggtatc gagttagatt ttgaacttaa caaacaaagg atttcgggcg
     4561 aaagaatgat aaatcatgca aattctaaac ttaaagtgct tgttattcct acagatgaag
     4621 aattagaaat cgctagaatc acagaagaac ttatcggtaa aaattaaatt ttaaaaacta
     4681 tataaatctt tcatttatat agtttttagc aaggttgtat attcactttg cttttcattt
     4741 aaaactttaa aagtgcttat catgtaagaa aattcatcat cacttaaatc ataaagtttt
     4801 ttaaccaata aatcattttt tgctcttaag atatcataag cctttttagt ttttggaatt
     4861 tcttcatttt ttatattaaa ttcttgtttt agctcatcaa aatgatgatt tttatcattg
     4921 taaagctgta aaagcaaagc atttttagcg agggttttat aaatttcatt gttttgaatt
     4981 tcttcatcac ttggttgagg cagaggaatt ctttctagat aggttttgct tacattgatt
     5041 tgcaccatat ttcttatgat aaaatcaacc actaaagaat taaacaaagc caaaacaaat
     5101 aaaattcttt cataaggcac tatatccatg caaattgcat catcttttac aatatattgt
     5161 ttcggaatat tagaataaac actatttccg cacccgcaat tttttggtaa taaagaagct
     5221 atcaaggttc tttcatttgt atcgcttgca atagttctat atccaagtct aaaaaattct
     5281 ctatcgtatt ttatcaattt aggatttaat tctttcccag tagctttttt agttcttgaa
     5341 agttctttgc tttttaatcg ctcgtcaaat ttagcctttt ctaaaaaata agtagcttgg
     5401 ctaaaatttg tatcaaactg atgtatcatt ttgccttcaa ataaaggcaa aagtccttcc
     5461 ctaaactctt ctataaacaa atctttatca tttgtcatat gaagttcatt tacaaaatct
     5521 atataatcaa aagacaagtt ttgaaaagca ttgtagcatt ttcttagaat ttctaaagcc
     5581 tgtttgtctt ttaactccat taaagctagg tgagttgggc ttagtttttt gatatctttt
     5641 aaacttagag ttaaaatttc atctttgttt tttaatgagt tcatatctgt tttataaaac
     5701 atcgttttga ttttgtgagt gtgatttgct tgtgtgtttt ttacttgcat aagagcaaat
     5761 ttatagcttt tatgcacatc aacaaatata gcttgtctat tttcaaaact ataaaaatat
     5821 tctaaagttt tattttctaa aatttctttt cttaaagtta agcttccatc ttcaaacatc
     5881 aaagcactag gaagtacata agctaaattt ccatcttgtt ttaaaagaga aagatttttt
     5941 tctacaaaaa gacgaaataa atttccatct ccactgcctt tgtttaaagg ataagctttt
     6001 ttataatact tgcttaaatc atttatatat gctttttgtt tttcataatt ttgctttata
     6061 taatctttcg ctagcaaatt gtcttgaatt tcttttttct tgctagcgat taagcttcta
     6121 taatcgcttt tatattgcgg aaagaaatca tcgtcactaa atttagtttt atcccaaggt
     6181 ggattaccta tgatgatatc aaagccttta aagacttgat tttctacgat ttcaggaaat
     6241 tctaactcat agttaaagaa attaaattct ttttgatatt tgctaatgac agcttttgct
     6301 tgttcatttt ggcttaaatt ttgtatatca tcttgactta gggcttttag aatttgtaat
     6361 tcttctttgt tgacaaaatg aagcgtgttg atatagttta gatataaatt tagtttatta
     6421 agttttggtg tgatttcatt ttgatagatt tgtttagatt gtttgatttg ttcttcgttg
     6481 gtatctttta gattgtcaag tttttcaaat acttcttgta aaatttcaaa ttcttgtgtt
     6541 atggaatttg taaaaaggtt gcttgagttt tgttttatca aatctttaaa atcacttagg
     6601 ttagaattta tcaaagcatt gccgcacttt atgtggtgtt ctataaaaga aagtggggtt
     6661 ccaaagataa aactatctat ccaaaggcta agtttagtaa gctctatgct aaaagggttt
     6721 aaatccaccc cataaataat gcgttttagt aaaagtcgtt ttaaaacatc actttcatct
     6781 acttcatagt cttgcacaaa atcttttata tagtttaaaa tattttcttt ttcttcttca
     6841 taaagttctt ttaaatttgt aaaatgatca aaatctgata aaacaatgtg tgtaatagca
     6901 tttaaaattc caactaaaaa atgcccgcta ccgcaagcat tgtctagtat tttaaatttc
     6961 aaaatgtttt cattgtttag tttgtctttt aaagcacttt ggattaaaaa attagctatg
     7021 gattgaggtg tgtaaaagct tgctgttgat tttcttgaat tactagaatt tttaagataa
     7081 atttgtcctt ttttataaaa ggtgtatttt tctacttttt ttgatttttc taaaatttta
     7141 aaatcataat tatcaaaata acattctatt tcttttgatt tttctttata acttacatag
     7201 taaatatctt catttgctat ttcaaaaaaa taagaaagca agccttcata aatcgtgcct
     7261 aaatgttcta cacttaaagt tttgtaatct ct
//
LOCUS       DAPIWJ010000077         7136 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.078, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000077 DAPIWJ010000000
VERSION     DAPIWJ010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7136)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7136)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7136
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.078"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            40..127
                     /locus_tag="RJ259_001368"
     tRNA            40..127
                     /locus_tag="RJ259_001368"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:74..76,aa:Ser,seq:gga)
     gene            174..249
                     /locus_tag="RJ259_001369"
     tRNA            174..249
                     /locus_tag="RJ259_001369"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:207..209,aa:Ala,seq:ggc)
     gene            253..328
                     /locus_tag="RJ259_001370"
     tRNA            253..328
                     /locus_tag="RJ259_001370"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:286..288,aa:Val,seq:gac)
     gene            356..886
                     /locus_tag="RJ259_001371"
     CDS             356..886
                     /locus_tag="RJ259_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDV7367063.1"
                     /translation="MQNTIIQKAVNKDLNSILEITKDALNAMKTMNFHQWDENYPNEI
                     VFQEDIQAQELYVFKENDEILGFICINEKFKPEFYKQVIFNKNYDDKAFYLHRLAVKQ
                     NAKGKGVAQKLLNFCENFALENHKASLRADTHSKNFPMNSLFKKLDFNFCGNFDIPNY
                     QDPFLAYEKILNQKAF"
     gene            complement(866..1468)
                     /gene="leuD"
                     /locus_tag="RJ259_001372"
     CDS             complement(866..1468)
                     /gene="leuD"
                     /locus_tag="RJ259_001372"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HDV7367064.1"
                     /translation="MQKFIIHKGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH
                     DLRYLDDKESVLNMDFNLNKKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIA
                     PSFADIFKNNALGNGLLTIELAKDEVLEIVDELKKSQDKNIEISLLEKRVFFKDKIFS
                     FDLDDFHRICLLEGLDNIALTLKHEAQIKAYEKNSKSFLV"
     gene            complement(1470..2882)
                     /gene="leuC"
                     /locus_tag="RJ259_001373"
     CDS             complement(1470..2882)
                     /gene="leuC"
                     /locus_tag="RJ259_001373"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HDV7367065.1"
                     /translation="MIMAKTLYEKVFDAHVVYEGKNELPILYIDRHLIHEVTSPQAFS
                     GLKMAKRRMARADLTLATIDHDVSTKSVDLNACSDMAKEQITTLMQNTKEFGVRLLGL
                     GDKNQGIVHIVGPEFGFTLPGVTLVCGDSHTATHGAFGALAFGIGTSEVEHVMATQTL
                     KQAKLKTMKIECKGQFQKGVYAKDLILYLIAQYGTAKGTGYAIEFCGELIRNLSMEAR
                     MTLCNMAIEFGAKVGMIAPDEITFEYIKGKEFAPKGEEFQKYCEYWKSLRSDEGAKYD
                     ESITLDVSKIKPQISYGTNPSQVIGIDEKIPKISDFKNQSEQKSLLDALYYVNLEQDQ
                     VIEGVKIDIVFIGSCTNGRLEDLKIAADILKGRKIHKNVKALIVPGSMQVRKEAENLG
                     LDKIFIEAGCEWRYAGCSMCLGMNDDKANSGQRVASTSNRNFVGRQGKGSITHLMSPA
                     SAAACAIEGVICDNRKYLGV"
     gene            complement(2869..3945)
                     /gene="leuB"
                     /locus_tag="RJ259_001374"
     CDS             complement(2869..3945)
                     /gene="leuB"
                     /locus_tag="RJ259_001374"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HDV7367066.1"
                     /translation="MKTYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFEFNEAKI
                     GGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFN
                     LFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEI
                     YTKKEIERIAHIAFESARIRKKKVHLIDKANVLASSILWREVVANVAKDYQDINLEYM
                     YVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP
                     AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGKMTKDLN
                     AKSYLNTDEMGDCILEILKENNNG"
     gene            complement(3942..5477)
                     /gene="leuA"
                     /locus_tag="RJ259_001375"
     CDS             complement(3942..5477)
                     /gene="leuA"
                     /locus_tag="RJ259_001375"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HDV7367067.1"
                     /translation="MKDNKIIIFDTTLRDGEQALGSSLGINQKLQIALALENLGVDVI
                     EAGFPVSSQGDFKAVQKIASKVKNSTICALSRALDKDIDMAYEALKVAKHFRIHTFIA
                     TSTLHMQDKLKKDFDEILSMAKRAIIRARSYTDDVEFSCEDAGRTPIDNLCFMVENAI
                     KAGAKTINIPDTVGYTLPSEFANIIKILFNKVPNIDKAIISVHCHNDLGMATGNSLSA
                     ILQGARQIECTINGLGERAGNCALEEVVMAIKTRKDYLKGFYTDIKCENIFKTSKLVS
                     AITNESIPSHKAIVGSNAFSHSSGIHQDGVLKNRQTYEIISPSAIGIHENRMLMTARS
                     GRAMIKTCLENLGYDENTYNLDDVYERFLRLADKKGQVYDYDLEALMFLSYENEEENK
                     FILEKLSVISGNIPTACVCMRIKEELKTEACTGNGPVEAVFNCIARITNLKPALKAYS
                     INAKSSGVDAQGQVDVDLEFKGRKFHGKGISTDVIEASAQAFVSAYNAIYRSLKVEER
                     KMA"
     gene            5797..6426
                     /locus_tag="RJ259_001376"
     CDS             5797..6426
                     /locus_tag="RJ259_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367068.1"
                     /translation="MLKELLEIKKEMEPVIHEANVKLNVLAREVIVRKKEYEIYGPMV
                     DRVYLDNAIYVKVMSSGRDVKTDNVTIKNGFYMVFVAPEKESTKDIKNKLKVAYEGLD
                     NKFIATLIRSCQRFKEIINKTQATLAKASKMNVVVKTNLGEASAALKFNITIEYTKEN
                     QKLTRENSKSAGSFRDTKTYINLVVEKNTESQICEKLLDDVEKYFIGGG"
     gene            complement(6462..7095)
                     /locus_tag="RJ259_001377"
                     /pseudo
     CDS             complement(6462..7095)
                     /locus_tag="RJ259_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890434.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
BASE COUNT         2381 a         1376 c          965 g         2414 t
ORIGIN      
        1 tttaaagctt ttatagatat aatgaacgct ttatttcata gacaggtgtc cgagcggttg
       61 aaggagcacg cctggaacgc gtgtaaagtg caagctttcg agggttcgaa tcccttcctg
      121 tctgccatca aataaacttt aaggcaaact aagttataat acaaacttca tttggggcat
      181 tagctcagct gggagagcac aacgctggca gcgttggggt cagcggttcg aacccgctat
      241 gctccaccat atggttccgt agctcagctg gtagagcact accttgacat ggtagtggcc
      301 gttggttcaa gtccaatcgg agccaccatc acccttcctt atacaaagga ttatcatgca
      361 aaacactatc atacaaaaag ccgtcaataa agatttaaat tctatacttg aaatcacaaa
      421 agatgcttta aatgctatga aaactatgaa ttttcaccaa tgggatgaga attatccaaa
      481 tgaaatagtt tttcaagaag atatacaagc acaagaactt tatgtgttta aagaaaatga
      541 tgaaatttta ggctttatct gtatcaatga aaaatttaaa cctgaatttt acaaacaagt
      601 tatttttaac aaaaattatg atgataaagc cttttatcta caccgtttag ctgtcaaaca
      661 aaatgcaaaa ggcaaaggcg tggcacaaaa acttttaaat ttttgcgaaa attttgcctt
      721 ggaaaatcac aaggcaagtt taagagcaga tactcatagt aaaaattttc ctatgaattc
      781 gctttttaaa aagcttgatt ttaatttttg tggaaacttt gacataccta attaccaaga
      841 tcctttttta gcttatgaaa aaattctaaa ccaaaaagct ttttgagttt ttttcatagg
      901 ctttgatttg tgcttcatgt tttaaagtta aagctatatt atcaagccct tccaaaagac
      961 aaattctgtg aaaatcatct aaatcaaaag aaaaaatctt atctttaaaa aatactcttt
     1021 tttccaacaa agaaatttct atatttttat cttgggattt ttttaactca tcaactattt
     1081 ccaaaacctc atctttagca agttctatag tgagcaaacc gtttcctaag gcattgtttt
     1141 taaaaatatc cgcaaaagaa ggtgcgataa tagctctaat accataatca accaaagccc
     1201 aaggcgcatg ctctcttgaa gagccactac caaaattttc aaaactcacc aaaatagagc
     1261 tattttgata ttctttttta ttgagattaa aatccatatt taaaacactt tctttatcat
     1321 ctaaataacg caaatcatgg aacaaatgct tgccaaaacc ttgcttagac actgcaagta
     1381 aaaattgctt aggtataatt tgatctgtgt ctatattggc atattctaaa ggacaagcta
     1441 tacctttgtg tataataaat ttttgcatat taaactccta aatactttct attatcacaa
     1501 ataacacctt ctatggcaca agctgctgca cttgcaggac tcatcaaatg agtgatagaa
     1561 cctttacctt gtctgcctac aaagttacga tttgaagttg aagcaactct ttgacctgaa
     1621 tttgctttgt catcattcat accaagacac atagaacacc ctgcatatct ccactcacac
     1681 cctgcctcga taaaaatctt atcaagtcct aaattttcag cttcttttct tacttgcatt
     1741 gaaccaggca cgattaaagc tttaacattt ttatgaattt tgcgcccttt taagatatca
     1801 gcagctattt taagatcttc taaacgccca tttgtgcaag atcctataaa tacaatgtcg
     1861 atttttaccc cttctataac ttgatcttgc tctaaattta cataatataa agcatcaagc
     1921 aaagattttt gctcgctttg atttttaaaa tcacttattt ttggaatttt ttcatctatg
     1981 ccaatcactt gcgaaggatt tgttccatag ctaatttgtg gttttatctt gcttacatct
     2041 agagtaatac tctcatcata ttttgctcct tcatcacttc ttaaactctt ccaatactca
     2101 caatactttt gaaattcttc tcctttaggt gcaaattcct ttcccttaat atactcaaaa
     2161 gtgatctcat caggagctat catacctact ttcgctccaa attctatagc catattacaa
     2221 agagtcattc tagcttccat acttagattt cttataagtt ctccgcaaaa ttctatagca
     2281 tagcctgtgc cttttgctgt gccgtattgt gcgatcaaat acaaaatcaa atccttagca
     2341 taaacgcctt tttgaaactg ccctttacat tcgattttca tagttttaag tttggcttgt
     2401 tttaaagttt gcgttgccat gacatgctct acttcactcg tgcctatacc aaaggctaaa
     2461 gctccaaaag ccccatgtgt tgccgtatga gaatccccac aaactaaagt aaccccaggt
     2521 aaagtaaagc caaactcagg acctactata tgaactatgc cttgattttt atctccaagt
     2581 cctaaaagcc ttactccaaa ttccttagta ttttgcatca aagttgtaat ttgctctttt
     2641 gccatatcag aacaagcatt taaatccaca cttttagttg aaacatcatg atctatggta
     2701 gccaaagtta aatccgctct tgccattcta cgcttagcca ttttaagccc tgaaaatgct
     2761 tgagggcttg ttacttcatg gattaaatgt ctatcgatat aaagtatagg aagttcgttt
     2821 ttgccttcat aaaccacatg agcatcaaag actttctcat ataaagtttt agccattatt
     2881 attctccttt aaaatttcta aaatacaatc ccccatttca tcggtattta aatacgactt
     2941 agcatttaaa tccttagtca tttttccttg tgccaatgcc aaagatatag cattttctat
     3001 atcctgtgcg gcttgttctt ctttgaaact atactttaac atcaaagccg cacttaaaat
     3061 ttgagctatg ggattagcta tatttaaatg agctatatca ggtgcacttc cacctgctgg
     3121 ctcataaagt ccaaaacctt tatcgtttaa acttgctgaa cttaacaaac ccaaagatcc
     3181 attaatggca gctaactcat cgctcaaaat atcaccaaaa agatttgaac aaagcataac
     3241 atcaaaaatg ctaggatttt ttacaatctg catcgcagca ttatccacat acatgtactc
     3301 taagtttata tcttgataat cttttgcaac atttgccacc acttctcgcc acaaaataga
     3361 acttgctaaa acattcgcct tgtcgattaa atgcactttt ttctttctta ttcttgcact
     3421 ttcaaaagcg atatgggcta tcctttctat ctctttttta gtgtaaattt cagtatcata
     3481 cgcactttct ttacctaaat cttgcttacc aaaataaatc ccacctgtaa gctctctaac
     3541 acataaaata tccactcctt tttggataat ctcatttttt aaaggtgaag catgagttaa
     3601 actttcataa attttacaag gacgcaaatt tgcaaacaaa ttaaaatgct ttcttaaagg
     3661 caaaagcgag gctctttcag gtctttgatc tatgggcaaa ttatcccact taggccctcc
     3721 aacagagcca aataaaatcg catcactttg ctcacaaagc tttaaagttt catcacttaa
     3781 agccactcca taagcatcta tacttgcacc gcctatttta gcttcattaa attcaaaact
     3841 aaaattgtat ttttgcgcga taaaagttaa aatttttaaa gcctctttca ttaccaaagg
     3901 ccctatacca tctcctgcta agacagctac tttataagtt ttcatgccat tttcctttct
     3961 tctactttta aagagcgata aatcgcattg taagcactca caaaagcttg tgctgaagct
     4021 tctataacat ctgttgaaat tccttttcca tggaattttc tccctttaaa ttccaaatcc
     4081 acatccactt gtccttgagc atctacccct gaactttttg cattgatact ataagctttt
     4141 agcgcaggct ttaaattcgt tatcctagca atgcagttaa aaactgcttc aacaggacca
     4201 tttcctgtgc aagcttcagt ttttaactct tctttaatac gcatacaaac acaagcagtt
     4261 gggatattgc cactaatcac gcttaatttt tcaagtataa atttattttc ttcttcattt
     4321 tcatagctta aaaacatcaa agcttccaaa tcataatcat acacttgacc ctttttatcc
     4381 gcaaggcgta aaaaacgctc ataaacatca tctaaattat aagtattttc atcatagcct
     4441 aaattttcaa ggcaagtttt tatcatagcc cttccacttc ttgccgtcat taacatacga
     4501 ttttcatgaa ttcctatggc actagggctt atgatctcgt aagtttgcct atttttaagc
     4561 actccatctt gatgaatgcc tgaactatga gaaaacgcat tgctacccac tatagcttta
     4621 tgcgaaggta tgctttcatt agtgatagct gaaactaatt ttgaagtttt aaagatattt
     4681 tcacatttaa tatcagtata aaaacctttt aaataatctt tcctagtttt tatcgccata
     4741 accacttctt ctaaagcaca attacccgcc ctttcgccaa gtccatttat agtgcactct
     4801 atctgtcttg caccttgtaa aatagcactt aaactattgc ccgttgccat acctaagtca
     4861 ttgtgacaat gcacagaaat gatagctttg tctatatttg gcactttgtt aaataaaatt
     4921 ttgatgatat tagcaaattc acttggcaag gtatagccta cggtatctgg gatatttata
     4981 gttttagcgc ctgcttttat cgcattttcc accataaaac aaagattatc tatcggagtt
     5041 cttcctgcat cttcgcatga gaattctaca tcatcagtat aagatcttgc tcttataatc
     5101 gctctttttg ccatagacaa aatttcatca aaatcttttt ttaatttatc ttgcatatgc
     5161 aaagtcgaag tggctataaa agtatgaatt ctaaaatgct ttgccacttt taaagcttca
     5221 taagccatat ctatatcttt atccaatgct ctagaaagtg cacaaatagt tgagttttta
     5281 accttagaag cgatcttttg caccgcttta aaatcccctt gtgaagatac cggaaaacct
     5341 gcttctataa catctacgcc taaattttca agcgctaaag cgatttgtaa tttttgattg
     5401 atacctaaag aactgcctaa agcttgttct ccatcacgca aagtggtatc aaagattatg
     5461 attttattat ctttcatgat ttaatccttt aaaaccaaac aaactaaatg aattaaaaat
     5521 tcaaaaactt aacaacaatg attaaaaatt aaaaatgtaa aaaatgatta aaaataaaat
     5581 tgagttttag agtgagagtt gcagtagcag attaaaagta ttgtctttac ttttttgttg
     5641 gactgaattc gaaatttcaa aaatttgttt catcttttcc tcctttgtta aaattaatac
     5701 ttaatgtatc atatttttag taaatgtgtt tgtaaaattc ttaaattaag aaaattattg
     5761 atataattgt aattttaagt aacaaaaagg aagttgatgt taaaagaact cttagaaatt
     5821 aaaaaagaaa tggaacctgt tatccacgaa gccaatgtga aattaaatgt cctagctcgt
     5881 gaagtcatag tccgaaaaaa agaatacgaa atttatgggc ctatggtaga tcgtgtttat
     5941 cttgataatg ccatttatgt taaagttatg tcaagtggac gcgatgtaaa aacagacaat
     6001 gtgactataa aaaatggttt ttatatggtt tttgttgccc ctgaaaaaga aagtacaaaa
     6061 gatatcaaaa ataaactcaa agtagcttat gaaggacttg ataacaaatt tatcgctaca
     6121 cttatacgat cttgccaacg ctttaaagag atcataaaca aaacccaagc tacacttgct
     6181 aaagcttcta aaatgaatgt ggtagtaaaa acgaatttag gtgaagcaag tgctgctcta
     6241 aaatttaaca tcactataga atatactaaa gagaatcaaa aactcactcg tgaaaattca
     6301 aaatcagcag gaagtttcag agatactaaa acttatatca atcttgtagt agaaaaaaat
     6361 acagaatctc aaatttgcga aaaactactt gatgatgttg aaaaatactt tatcggtgga
     6421 ggttgatttc attaatgcaa gttataaaaa cttgcattag attaaaattt ataattatat
     6481 cctaaatata caccataatt tgtttgttta ggatcgtaaa agtttgaacc cactttattt
     6541 tgataaaaat ttctagaatt ataatgaatt tgctctgctt taaagcctaa ttctaggtgt
     6601 caaatcatat aaagcaccta ttttcgctcc ataaaaataa ccgtcaaaat tttgcgacaa
     6661 agataaaaag cttgttttta aggtaagatc tgttcttgca tatcctccat acacacctaa
     6721 aacagctctg gttttttcaa aaagcttagg agtaaaatca taacctgtta aaaatttatg
     6781 tgtagtaaaa tcaccttcga tttgaatttt aggagttttg ataaaatcac taaattcatc
     6841 agaataatta taaccagcat aaattctatg attttcattt aaacgatatc caagttttag
     6901 accaaacgat ggtatattac ctgaaatatc tccattaaaa ttttgctttg tattcttatg
     6961 ttttaactca ctttttactt gagcatgcat ccaagctgca tcagcaccta taaaaaaacc
     7021 agaattctca tctgctaaag ccaaatttga aaacaaagta gcacttgcga taatgcttaa
     7081 taatttttta ttcataacct aactccttat aataaaattc gatctaaaaa atttag
//
LOCUS       DAPIWJ010000078         7131 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.079, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000078 DAPIWJ010000000
VERSION     DAPIWJ010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7131)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7131)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7131
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.079"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(55..537)
                     /gene="ruvC"
                     /locus_tag="RJ259_001378"
     CDS             complement(55..537)
                     /gene="ruvC"
                     /locus_tag="RJ259_001378"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HDV7367069.1"
                     /translation="MNLKILGIDPGSRNCGYAIIEANKGKNILIEAGLIKIKPSTLQY
                     QITELCEGLDLIFKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAE
                     YTPLQVKKAVTGKAKATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV
                     "
     gene            633..1955
                     /gene="dnaA"
                     /locus_tag="RJ259_001379"
     CDS             633..1955
                     /gene="dnaA"
                     /locus_tag="RJ259_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HDV7367070.1"
                     /translation="MNPSQILENLKKELNENEYENYLSNLKFNEKQSKADLLVFNAPN
                     ELMAKFIQTKYGKKIAHFYEVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTILN
                     PSFTFESFVVGDSNKYAYGACKAIAHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNAS
                     LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEE
                     FFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIR
                     KKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD
                     HIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP
                     QLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKILVKSQS"
     gene            2115..3182
                     /locus_tag="RJ259_001380"
     CDS             2115..3182
                     /locus_tag="RJ259_001380"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HDV7367071.1"
                     /translation="MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLI
                     KASDYEIGINYKIKKIRVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLFIRQKS
                     TKYKLPMFNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLD
                     IKTDKINFVGTDTKRLAIYTLEKANNQEFSFSIPKKAIMEMQKLFYEKIEIFYDQNML
                     IAKNENFEFFTKLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEKMRLHF
                     NKDKIIFEGISLDNMEAKTELEIQTGVSEEFNLTIKIKHLLDFLTSIEEEKFTLSVNE
                     PNSAFIVKSQGLSMIIMPMIL"
     gene            3211..5520
                     /gene="gyrB"
                     /locus_tag="RJ259_001381"
     CDS             3211..5520
                     /gene="gyrB"
                     /locus_tag="RJ259_001381"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HDV7367072.1"
                     /translation="MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVD
                     NSIDEAMAGHCDTIDVEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGK
                     FDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK
                     KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGKHESFHFEG
                     GISQFVTDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGT
                     HEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKG
                     KLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKE
                     SLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE
                     KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTF
                     FFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNYEGIGM
                     NDLKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQ
                     GHNILNHYINENEIRAFVQTQNGLEELVINEELFTHPLYEEASYIFDKIKDRSLEFDK
                     DILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSAND
                     TFNLFMGDEVEPRRDYIQAHAKDVKHLDV"
     gene            complement(5548..5889)
                     /locus_tag="RJ259_001382"
     CDS             complement(5548..5889)
                     /locus_tag="RJ259_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monoheme cytochrome C"
                     /protein_id="HDV7367073.1"
                     /translation="MKKIILILALFLSASWAQNLEINPDTGLIIDPDSPLVEANCLAC
                     HGSNLITNMHASRKAWLAAIRWMQDSEGLWEIEPEDEEKILNYLEKYYGEKYDTRRRI
                     PLAILLQNKTH"
     gene            complement(5892..7130)
                     /locus_tag="RJ259_001383"
     CDS             complement(5892..7130)
                     /locus_tag="RJ259_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase"
                     /protein_id="HDV7367074.1"
                     /translation="MKQNDQKENRRDFLKNIGLGLFGISVLSNFSFENFLGSKALAKE
                     LPDFKIEGKKDLIYHGEKPLTAETEIYALDSDFTKPENFFVRNNGLPPSLETIKERLH
                     KGWTLEIDGESIINKKSYTIEDLKKKFKTYTYALTVECGGNGRSEVIPSTKGTQWGYG
                     AVACGRWTGVRLKDILKDCGIKNDAVYIGYYGIDTKLNGEETSPISRGVPISKALQDE
                     TLIAWAYEGKDIPLVNGYPLRLVCGGYPASTSGKWLYKISVRNKIHDGEKMEGSYKVP
                     VNPVKPGDFNYKGEMKIIESMPIRSVITNIKNGSEIKANKKFEVRGKAWAGELEVSEV
                     YVSNDYGVTWTKAKVEKPLNRLAWQKWSAQISIPTKGYYEIWARAIDSQGNSQPMVLA
                     QWNPGGYINNACHRVNVYGV"
BASE COUNT         2640 a         1081 c         1129 g         2281 t
ORIGIN      
        1 gtattttagg agtttatgaa ggtttgggct tttgtgtaat aaaaattact aaaatcacac
       61 cctaactctt aaatttgctg catgggttaa agctactgca atagcatctg tgatatccaa
      121 aggcttgata tctttactaa gtcctaaaag cctttttacc ataaaagcaa cttgttcttt
      181 agttgctttg gcttttcctg taacggcttt ttttacttgt aagggagtgt attctgcaaa
      241 atctccatga atttgaagaa tttttaagga taaagccccg cgaaactgag caagttttaa
      301 aacggttttt ggattgtaag caaaaaagat atcttctata gccacctcat caaaagaatg
      361 atttttaaaa atcaagtcca aaccctcaca aagctctgtg atttgatact gtaaggtact
      421 tggctttatc tttataagtc ctgcttctat gagaatgttt tttcctttgt tggcttctat
      481 gatagcataa ccgcaatttc ttgaacctgg atctatacct aaaattttca aattcatacc
      541 ttttgaaaaa taaaatacaa aagcggattt taaccttttt ttatgaaatt taagataaaa
      601 tttatacatt atgcaaaatt taaagagaga ttatgaatcc aagccaaata cttgaaaatt
      661 taaaaaaaga attaaacgaa aacgaatacg aaaactattt atcaaattta aaattcaacg
      721 aaaaacaaag caaagcagat cttttagttt ttaatgctcc aaatgaactc atggctaaat
      781 tcatacaaac aaaatacggc aaaaaaatcg cgcattttta tgaagtgcaa agcggaaata
      841 aagccatcat aaacatacaa gcacaaagtg ctaaacaaag caacaaaagc acaaaaatcg
      901 acatagctca tataaaggca caaagcacga ttttaaatcc ttcttttact tttgaaagtt
      961 ttgttgtagg ggattctaac aaatacgctt atggagcatg taaagccata gcacataaag
     1021 acaagcttgg aaaactttat aatcctatct ttgtttatgg gcctacagga cttggaaaaa
     1081 cacatttact tcaagcagtt ggaaatgcaa gcttagaaat gggaaaaaaa gttatttacg
     1141 ctaccagtga aaattttatc aatgatttta cttcaaattt aaaaaatggc tctttagata
     1201 aatttcatga aaagtataga aactgcgatg ttttgcttat agatgatgtg cagtttttag
     1261 gaaaaaccga taaaattcaa gaagaatttt tctttatatt taatgaaatc aaaaataacg
     1321 atggacaaat catcatgact tcagacaatc cacccaacat gctaaaaggt ataaccgaac
     1381 gcttaaaaag tcgttttgca catgggatca tagctgatat aactccacct caactagata
     1441 caaaaatagc catcataaga aaaaaatgtg aatttaacga tatcaatctt tctaatgata
     1501 tcataaacta tatcgccact tctttagggg ataatataag agaaatagaa ggtatcatca
     1561 taagtttaaa tgcttatgca accatactag gacaagaaat cacactcgaa cttgccaaaa
     1621 gtgtgatgaa agatcatatc aaagaaaaga aagaaaatat cactatagat gacattttat
     1681 ctttggtatg taaagaattt aacatcaaac caagcgatgt gaaatccaat aaaaaaactc
     1741 aaaatatagt cacagcaaga cgcattgtga tttacctagc tagggcactt acggctttga
     1801 ctatgccaca acttgcgaat tattttgaaa tgaaagatca tacagctatt tcacataatg
     1861 ttaaaaaaat cacagaaatg atagaaaatg atggttcttt aaaagcaaaa atcgaagaac
     1921 ttaaaaacaa aattcttgtt aaaagtcaaa gttaagtgaa aggatgtgaa aaataaattc
     1981 tagagtgtga aaaaaagaaa ttaagcaaag tatgataaaa tacaaatttg attatttcgc
     2041 tttgaagaat ttcacaattt caacaagctt attattacaa cgaatttaaa attaaaataa
     2101 accaaggaga aaaaatgaag ttaagtatca ataaaaatac tttagaatct gcagtgattt
     2161 tatgtaatgc ttatgtagaa aaaaaagact caagcaccat tacttctcat cttttttttc
     2221 atgctgatga agataaactt cttattaaag ctagtgatta tgaaataggt atcaactata
     2281 aaataaaaaa aatccgcgta gaatcaagtg gttttgctac tgcaaatgca aaaagtattg
     2341 cagatgttat taaaagctta aacaatgaag aagttgtttt agaaaccatt gataatttct
     2401 tatttataag acaaaaaagt acaaaataca aacttcctat gtttaatcat gaagattttc
     2461 caaattttcc aaatacagaa ggaaaaaacc aatttgacat tgattcaagt gatttaagcc
     2521 gttctcttaa aaagatatta ccaagtattg atacaaataa cccaaaatac tccttaaatg
     2581 gtgcattttt agatataaaa acagataaaa ttaacttcgt aggaactgat acaaaacgcc
     2641 ttgcaatcta tactttagaa aaagcaaata atcaagaatt tagttttagt atccctaaaa
     2701 aagctattat ggaaatgcaa aaacttttct atgaaaaaat agaaattttt tatgatcaaa
     2761 atatgcttat tgccaaaaat gaaaattttg aattctttac aaaacttatc aatgataaat
     2821 ttccagatta tgaaaaagtt ataccaaaaa ctttcaaaca agaactcagt ttttcaactg
     2881 aagattttat agatagtctt aaaaaaatca gcgttgtaac tgaaaaaatg agacttcatt
     2941 ttaacaaaga taaaatcatc tttgaaggta taagtttaga caatatggaa gcaaaaacag
     3001 aacttgaaat tcaaacagga gtaagtgaag aatttaatct tactataaaa atcaaacatt
     3061 tacttgattt cttaacttct atagaagaag aaaaattcac tttaagtgta aatgaaccta
     3121 attcagcatt tatagtcaaa tcccaaggac tatcaatgat tatcatgcct atgattttgt
     3181 aataaaacaa gtaaaagata aaggaaaaat atgcaagaaa attacggtgc gagtaatatt
     3241 aaagtcctaa aaggcttaga agctgttaga aaacgcccag gtatgtatat aggagataca
     3301 aacataggcg gacttcatca tatgatttat gaagttgtgg ataattctat cgatgaagct
     3361 atggcaggac attgcgatac tatagatgta gaaatcacta ctgaaggaag ctgtatagtt
     3421 agtgataatg gtcgtggtat tcctgttgat atgcacccaa ctgaaaatat gccaacttta
     3481 actgttgttt taactgtcct acatgcaggg ggaaaattcg ataaagatac ttataaagtt
     3541 tcaggcggtt tgcacggtgt tggggtttcg gttgtaaatg cactctctaa aaaacttgta
     3601 gctacagttg aaagaaatgg agaaatttat cgtcaagaat tttcagaagg taaagttatc
     3661 agtgaatttg gtgtgatagg aaaaagtaaa aaaacaggaa caactataga attttggcct
     3721 gatgatcaaa tttttgaagt gactgaattt gattatgaaa ttttggctaa aagatttcgt
     3781 gaacttgcat acttaaatcc aaaaatcact ataaatttta aagataaccg cgtaggcaaa
     3841 catgaaagtt ttcactttga aggtggaatt tctcagtttg ttacagactt aaataaaaaa
     3901 gaagctttaa ctaaagcaat tttctttagt gtagatgaag aagatgtgaa tgttgaagta
     3961 gctttgcttt acaatgatac ttatagtgaa aatttactct cttttgtaaa taatattaaa
     4021 accccagatg gtggaacaca cgaagctggt tttagaatgg gtttaactcg tgtgataagt
     4081 aactatatag aagcaaatgc aagtgctaga gaaaaggata ataaaatcac gggtgatgat
     4141 gtgcgtgaag gtttgatcgc tattgtgagt gtaaaggtac ctgaaccaca atttgaagga
     4201 caaaccaaag gaaaacttgg ttcaacttat gtgcgtccta tagtttcaaa agcaagtttt
     4261 gagtatttga ctaaatattt tgaagaaaat cctatcgaag ctaaagctat aatgaataaa
     4321 gctttaatgg cagctagagg aagagaagca gcgaaaaaag ctagagaatt aacgcgcaaa
     4381 aaagaaagtt taagcgtagg aactttacca gggaaattag ctgattgtca aagtaaagat
     4441 ccaagtgaaa gtgaaattta tcttgtggaa ggggattctg caggaggttc tgcaaaacaa
     4501 ggtagagaaa gatctttcca agctatactg cctttgcgtg gtaaaatttt aaatgttgaa
     4561 aaagcaagac tagataaaat tttaaaatct gagcaaattc aaaatatgat taccgctttt
     4621 ggctgtggta taggtgaaga ttttgatctt tcaaaactta gatatcataa aatcatcatc
     4681 atgacagatg cggatgttga tggatctcat atacaaacct tgcttttaac tttcttcttc
     4741 cgttttatga atgaacttgt ggcaaatgga catatttatc tagcacaacc acctttatat
     4801 ctttataaaa aagctaaaaa gcaaatttat ttaaaagatg aaaaagcttt gagcgaatac
     4861 ctgatagaaa cgggaataga aggtttaaac tatgaaggta taggaatgaa tgatttaaaa
     4921 gattatttaa aaatcgttgc agcttatcgt gcgattttaa aagatcttga aaagcgtttt
     4981 aatgtgattt ctgtgatacg ctatatgata gaaaattcaa atttagttaa aggaaataat
     5041 gaagaattat ttagtgtaat caaacaattt ttagaaacac aaggacacaa tatcttaaat
     5101 cattatatca acgaaaatga aattcgagct ttcgttcaaa ctcaaaatgg cttagaagaa
     5161 cttgtgatca atgaagaact tttcactcat ccactatatg aagaagcgag ttatattttt
     5221 gataagatta aagatagaag cttggaattt gataaagata ttttagaagt tcttgaagat
     5281 gttgaaacca atgctaaaaa aggtgctact atacaacgct ataaaggttt aggggaaatg
     5341 aatcctgagc aactttggga aaccacaatg gatccaagcg taagaagact tttaaaaatc
     5401 actattgaag atgcacaaag tgcaaatgat acctttaatc tctttatggg tgatgaggtt
     5461 gaaccaagac gcgattatat ccaagcgcac gctaaagatg taaagcattt ggatgtgtaa
     5521 aaatttatca ttgaagaaat gatttcttca atgagttttg ttttgtaaga gtatagctag
     5581 aggaattctt cttcttgtat cgtatttttc tccataatat ttttcaagat aatttaaaat
     5641 tttttcttca tcttcaggtt ctatttccca aagtccttca ctatcttgca tccatcttat
     5701 agctgctaac caagcttttc tacttgcatg catattggta atgagattgg atccatgaca
     5761 agctaaacaa tttgcttcca ctaaaggtga atcaggatcg ataatcaatc ctgtatcagg
     5821 gttaatttca agattttgag cccaacttgc acttaaaaac aatgctaaga tcaatataat
     5881 ttttttcata cttaaactcc ataaacatta actctatggc atgcattatt gatatatcct
     5941 cctggattcc actgtgctaa aaccataggt tgactgttac cttgactatc gatagctctt
     6001 gcccaaattt cataatatcc ttttgttggt attgatattt gagcactcca tttttgccat
     6061 gctaatctat ttaatggttt ttctaccttt gctttagtcc atgttacgcc ataatcattg
     6121 cttacataaa cttcactaac ttcaagttct ccagcccaag ctttacctct aacttcaaat
     6181 tttttatttg cttttatttc agaaccattt ttgatattag taattacaga tcttataggc
     6241 attgattcta tgattttcat ctcgccttta tagttaaaat ctcctggttt taccggattt
     6301 acaggaactt tataagaacc ttccattttt tcaccatcat gaattttatt tcttactgaa
     6361 attttataaa gccatttacc gcttgtactt gcagggtaac caccacaaac aagtctaagt
     6421 ggatagccat tgactaaagg aatatctttg ccttcataag cccaagctat tagagtttca
     6481 tcttgtaaag ctttagaaat aggaactcct ctactaatag gtgaagtttc ttcaccattt
     6541 aattttgtat ctatgccata atatccgata taaaccgcat catttttgat gccacaatct
     6601 tttaaaatat cttttaaacg cactcctgtc catctaccgc aagctactgc accataaccc
     6661 cattgagttc cttttgtgct aggtataact tcggatctac catttccacc gcattcaact
     6721 gttaaggcat aagtataggt tttaaatttc ttttttaaat cttctatggt gtaagatttt
     6781 ttattgataa tgctttctcc atcgatttct aaagtccaac ctttatgaag tctttctttt
     6841 atcgtttcta ggcttggtgg taagccatta tttctaacaa agaaattttc aggtttagta
     6901 aaatcagaat caagagcata aatttcagtt tctgctgtta atggtttttc gccatggtag
     6961 ataagatctt ttttaccttc tattttaaaa tcaggcaatt cttttgccaa agccttactt
     7021 cctaaaaaat tctcaaaaga aaaatttgac aatacactaa tgccaaataa accaagtcct
     7081 atatttttta gaaagtctct acgattttct ttttgatcgt tctgtttcat t
//
LOCUS       DAPIWJ010000079         7065 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.080, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000079 DAPIWJ010000000
VERSION     DAPIWJ010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7065)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7065)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7065
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.080"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..533
                     /locus_tag="RJ259_001384"
     CDS             <1..533
                     /locus_tag="RJ259_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367075.1"
                     /translation="ASALSAVSFKEDSLKISFEGYKTKDMIGTKGEFKNVEYKFSKNI
                     KDLASYLKGAKATIKPSNAFMGEGNDIITNNITKVFFPALLGDTDIKVVFQDVIAGEN
                     KGVISAKITMDKKSTIVPLTYTIKDNKFEAKGQLDLHTFKNGSKALKALSDVAAGHGG
                     ISWPLVDISFNADLAE"
     gene            complement(549..1115)
                     /gene="rsmG"
                     /locus_tag="RJ259_001385"
     CDS             complement(549..1115)
                     /gene="rsmG"
                     /locus_tag="RJ259_001385"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HDV7367076.1"
                     /translation="MIFKDYDFLQNYDLKNFEEKVKIYKELLSKFNRIHNLTHLKNID
                     ENIFDSIKILDFYDFSKAKNIADIGSGAGFPVVFLAFLLQSNFHLFEPNPKKAAFLRT
                     LKIECELPNLHIYKEKVQEYKNTFKADIITSRALMDVKPLLEICKNLKDENTVFILWK
                     GSEIYQELENIKDYEIFENNLRRYCILK"
     gene            complement(1116..1676)
                     /gene="ribA"
                     /locus_tag="RJ259_001386"
     CDS             complement(1116..1676)
                     /gene="ribA"
                     /locus_tag="RJ259_001386"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HDV7367077.1"
                     /translation="MEIKISEIANLPSKWGNFQMQSFKENDKEHLCIFKNTPKDTLNL
                     RIHSECLTGDALGSLKCDCGEQLEFSLKYIEKNGGMVIYLRQEGRGIGLFNKVNAYAL
                     QDKGFDTIKANHQLGFKADERTYEIVEFILKHYEISKVNLLTNNPEKLDSIKEKIITR
                     IPILIEPNRFNVEYLNIKQTQMGHLK"
     gene            1734..2717
                     /gene="hemB"
                     /locus_tag="RJ259_001387"
     CDS             1734..2717
                     /gene="hemB"
                     /locus_tag="RJ259_001387"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HDV7367078.1"
                     /translation="MFKRFRRLRLNENLRSMVRENSLSVNDLIYPLFVVNGTGIKKEI
                     SSMPDVFQMSLDEILKECQNVVNLGIKAIILFGVLENEKKDSCGSDALDDEGLVARSI
                     REIKKNFPDLFIISDLCFCEYTDHGHCGIIDPKIKSVDNDATLEISAKQALVHARAGV
                     DMIAPSGMMDGVITTLRKALDKEGFENLPIMAYSTKFASSYYGPFRDVAESAPSYGDR
                     KSYQMDFANGKEALEESLEDEAQGADILMVKPALAYLDVVKEISLHSNLPLCIYNVSG
                     EYAMLKAAKNAGVIDYEKVLYETIIAFKRAGAKLIITYHAKELAKMLKGEK"
     gene            2714..3634
                     /gene="argF"
                     /locus_tag="RJ259_001388"
     CDS             2714..3634
                     /gene="argF"
                     /locus_tag="RJ259_001388"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDV7367079.1"
                     /translation="MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEK
                     NSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHE
                     TLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDSNNMCNS
                     WLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVI
                     TDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEK
                     HADVIFEEARNRLYVVKALLCFLDNQRGRE"
     gene            3631..4122
                     /locus_tag="RJ259_001389"
     CDS             3631..4122
                     /locus_tag="RJ259_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2603 domain-containing protein"
                     /protein_id="HDV7367080.1"
                     /translation="MKELEKYSTCLKRIDEFSQNLGIKKKDRTIFKMKQSENENEKCL
                     VLENGSFDSPEPWFVIDENDEIHTLLSLQSLKNILESLKQSQKENFELRLEKAIYQQI
                     PVDFNDVWTVAMDEIKQKAQNGTMEVSIDLEKLISKIKQEHPNLFVDMQAMIERVNQN
                     ERL"
     gene            4109..5464
                     /gene="hemN"
                     /locus_tag="RJ259_001390"
     CDS             4109..5464
                     /gene="hemN"
                     /locus_tag="RJ259_001390"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HDV7367081.1"
                     /translation="MRDYKAFVKYSKAGPRYTSYPTAVEFNANFKYEEYIEILKKQDR
                     SLSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLTYIFKELDILSTILDTKREVVQM
                     HFGGGTPTFFSAKQLQSLILKIRSVFGNFSKDAEISCEIDPRFLNEEQAIVLTQNGFN
                     RISFGVQDFDEKVQKEIHRIQSFELTQNALNLVRNKGIKSVNMDLIYGLPYQNLQSFT
                     QTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCENFLSKNG
                     YKMIGMDHFAKENDELFKALENGTLHRNFQGYTTKGGADLVGVGLTSIGEGQRHYAQN
                     FKDMSSYEAALDRGVLPFERGVALSDDDELRKAVIMELMANFKLDIKSIEKEFCIDFQ
                     EYFKEDLKALEEYKDFINFDENFIKVNETGVLLIRNIAMCFDAYMKNISEDKKVFSKT
                     V"
     gene            5466..6731
                     /locus_tag="RJ259_001391"
     CDS             5466..6731
                     /locus_tag="RJ259_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HDV7367082.1"
                     /translation="MKFSQISDACVKCGKCIPVCTIHEENRDEITSPRGFLDLLSAYK
                     EGILELDKEAKKVFESCFLCTNCVEVCPSKLRVDNAIEEVRYDIAKKFGIAWYKKLIF
                     FFLRRRKILDLVAKLGYVFQSCAFKIQNENENIGMKARFSMPFVKKGRLLTNFNKKSV
                     LNSNPKFINNDGEKTIGFFVGCLANYFYIDTANAVLKIARELKINVDLMKEQVCCGAP
                     QFFTGDFKSVEVLAKKNIEYFEKKLEKLDAIIVPEATCSAMLKIDYEHFFIMQNDLDW
                     AKRAKCVSSRIYMASEYFYKFTSLEEILKTKNKFNYSITYHDPCHARKMQGVFKEPRE
                     LLKTNYHFVEMSNSNTCCGFGGVSMQTDYYDRALSVGLKKAQMIDESKASVVSAECSA
                     CRMQISNALEQNSSKVVFASPLELIAKAL"
     gene            6728..>7065
                     /locus_tag="RJ259_001392"
     CDS             6728..>7065
                     /locus_tag="RJ259_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367083.1"
                     /translation="MMMKIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSN
                     VDLLEFSDDSFTFEEIVKHFNICDTEDMIIVEDFDMKSNKDNQNQEDDIEHNILKSEK
                     IIHENTKQTS"
BASE COUNT         2521 a          849 c         1326 g         2369 t
ORIGIN      
        1 tagcttcggc tttaagtgct gtatctttta aagaagatag tttaaagatt tcttttgaag
       61 gatataaaac taaagatatg ataggaacaa aaggtgaatt taaaaatgta gaatataaat
      121 tttctaaaaa tataaaggat ttggcaagtt atcttaaagg cgctaaagct accataaagc
      181 caagcaatgc ttttatgggt gaaggcaatg atattataac caataatatc acaaaagtat
      241 ttttccctgc tttattggga gatacggata ttaaagttgt ttttcaagat gtgattgcgg
      301 gtgaaaataa aggcgttatt tcagcaaaaa ttactatgga taaaaaaagt actattgtac
      361 ctttaactta taccatcaaa gataataaat ttgaagctaa aggacaactt gatttgcata
      421 cttttaaaaa tggttctaaa gcattaaaag cattaagcga tgttgctgca ggacatggtg
      481 gaatttcttg gcctttagtg gatatcagtt ttaatgctga tttagcagaa taaaaagtag
      541 ccttagggct actttaaaat acaatatctt cttaaattat tttcaaaaat ttcataatct
      601 tttatatttt caagttcttg ataaatttca ctacctttcc ataaaataaa aactgtattt
      661 tcatctttta gatttttaca aatttcaagc aaaggcttga catccattaa ggctcttgaa
      721 gtgatgatat cagctttaaa ggtattcttg tattcttgaa ctttttcttt gtaaatatgt
      781 aaatttggaa gttcacattc tatttttaat gtccgcaaaa aggcagcttt tttgggattg
      841 ggttcgaaaa gatgaaaatt gctttgcagt aaaaaagcta aaaatacaac tggaaatcct
      901 gcgccacttc ctatatcggc aatatttttt gctttagaaa aatcataaaa atctaaaatt
      961 ttaatactat caaagatatt ttcatctata ttttttaaat gagtaagatt gtgaatgcgg
     1021 ttaaatttag ataataattc tttataaatt tttacctttt cttcaaagtt ttttaaatcg
     1081 tagttttgca aaaaatcata atctttaaaa atcatttatt taagatgtcc catttgagtt
     1141 tgttttatgt ttaaatactc tacattaaaa cgattaggtt ctattaaaat cggtatgcgt
     1201 gtgatgattt tttctttgat agaatctagc ttttcagggt tatttgtgag taaattaacc
     1261 ttagaaattt catagtgttt gagtataaat tctacaattt cataagttct ctcatcggct
     1321 ttaaagccaa gctgatgatt tgctttaatc gtatcaaaac ctttatcttg taaagcataa
     1381 gcattaacct tgttaaaaag ccctataccc cttccttctt gtctaagata aatcaccatt
     1441 ccgccattct tttctatata ttttagcgaa aattcaagtt gttctccgca gtcgcatttt
     1501 aaacttccta aagcatctcc tgttaagcac tctgaatgaa ttcttagatt gagtgtatct
     1561 tttggagtgt ttttaaatat gcataaatgt tctttatcgt tttctttgaa actttgcatt
     1621 tggaaatttc cccatttgct aggtaaattc gcaatttctg aaatttttat ttccatttac
     1681 tactctctat aatcaaattt atgttaagat tttagcaaaa aaaggacaaa aaaatgttta
     1741 aaagatttag aagattaagg cttaatgaaa acttaagatc tatggtaagg gaaaattctt
     1801 taagtgtaaa tgatttgatt tatccgcttt ttgtggttaa tggaacgggg ataaaaaaag
     1861 aaatttcttc tatgcctgat gtgtttcaaa tgagtttaga tgaaatttta aaagagtgtc
     1921 aaaatgtagt taatttaggc attaaagcca ttatactttt tggtgtttta gaaaatgaga
     1981 aaaaagacag ttgtggaagc gatgctttag atgatgaagg gcttgttgca agaagtataa
     2041 gagagattaa gaaaaatttt ccagatcttt ttataatcag tgatctttgt ttttgcgaat
     2101 acacagatca cgggcattgt gggattatcg atccaaaaat aaaaagcgta gataatgatg
     2161 caactttaga aatttcagcc aagcaagcct tagttcatgc aagagcaggg gtagatatga
     2221 tagcacctag tggaatgatg gatggtgtta tcactacttt gcgcaaagct ttagataagg
     2281 aaggttttga aaatttgcct ataatggcgt attctactaa atttgcatca agttattatg
     2341 ggccatttcg agatgtagca gagtcagctc caagttatgg agatagaaaa agctatcaaa
     2401 tggattttgc taatggtaaa gaagctttag aagaaagctt agaggatgaa gcacaaggag
     2461 ctgatatttt aatggtaaaa cctgctcttg cttatcttga tgtggttaaa gaaatatctc
     2521 ttcattctaa cttgcctttg tgtatttata atgtaagcgg agagtatgct atgttaaagg
     2581 cagctaaaaa tgcaggagtg attgattatg aaaaagtttt gtatgaaact ataatagctt
     2641 ttaaaagagc aggggcaaag cttatcatca cttatcatgc taaagaatta gctaaaatgt
     2701 taaaaggaga aaaatgaaac attttttaac tttaagagat ttttctaagg aggaaatttt
     2761 aagccttgta aatcatgcta gcgagcttaa aaaagagcct aaaaaacttt tacaagataa
     2821 aactttagca atgatttttg agaaaaactc tacaagaaca agaatggcat ttgaattagc
     2881 cataacagag cttggcggaa aggctttgtt tttaagcagc aatgatttac aacttagtcg
     2941 tggtgagcct gtaaaggata cagctagggt gataggggcg atggttgatt ttgtgatgat
     3001 gagggtcaat aaacatgaaa ctttactcga atttgcaaga tattctaaag ctcctgtgat
     3061 caatgcttta agcgagcttt atcatcctac tcaggtttta ggggatttat ttactatcaa
     3121 agaatggaat aaaatgcaaa atggtatagc aaaagttgct tttatcggag atagtaataa
     3181 tatgtgcaat tcttggctta ttacggctgc gattttgggc tttgaaatta gtatagctat
     3241 gccaaaaaac tataaaatta gccctgaaat ttgggaattt gctatgaaac aggctttgat
     3301 ttcaggagct aaaatttcct taggctatga taaatttgaa gccttaaagg ataaagatgt
     3361 agtcattacc gatacttggg tttccatggg cgaagagaat gaaaaagaac gcaagattaa
     3421 agaatttgaa ggatttatga tcgatgaaaa ggctatgagc gttgccaata aagacgcgat
     3481 attgcttcat tgtttgcctg cttatagggg ttatgaagtg agtgaagaaa tttttgaaaa
     3541 acatgcagat gtgatttttg aagaagcaag aaatcgcctt tatgtggtaa aagccttgct
     3601 ttgctttttg gataatcaga gaggaagaga atgaaagagc tagaaaagta tagcacttgc
     3661 ttaaaacgca ttgatgaatt tagtcaaaat ctaggaataa agaaaaaaga tagaacgatt
     3721 tttaaaatga agcaaagcga gaatgaaaac gaaaaatgtt tagttcttga aaatggaagt
     3781 tttgattctc ctgagccttg gtttgtgatc gatgaaaacg atgaaattca cactttgctt
     3841 tctttacaaa gtcttaagaa tatacttgaa agtttaaaac aaagtcaaaa agagaatttt
     3901 gaattgcgtt tagaaaaggc gatttatcaa caaattcctg tagattttaa cgatgtttgg
     3961 acggttgcta tggatgagat caagcaaaag gcgcaaaatg gtaccatgga agttagtatt
     4021 gatcttgaaa aattaatttc taaaatcaaa caagagcatc caaatttatt tgtagatatg
     4081 caagcgatga tagaaagggt aaaccaaaat gagagattat aaagcttttg taaaatactc
     4141 taaagcagga ccacgctaca cttcttatcc tacagcagta gagtttaatg caaatttcaa
     4201 atacgaagaa tatatagaaa ttttaaaaaa acaagataga tctttatcgc tttattttca
     4261 tttaccattt tgtaggagtg cttgttattt ttgtggttgc aatgtcatct atactgcaaa
     4321 agaagagagt aaagaaaggt atttaactta tatttttaaa gagcttgata ttttaagtac
     4381 cattttagat actaaaagag aagtggtgca aatgcacttt ggtggcggaa ctccaacttt
     4441 ttttagcgct aaacaacttc aaagtttgat tttaaaaatc agatctgttt ttggaaattt
     4501 ttctaaagat gcagagatta gctgtgagat cgatccgcgt tttttaaatg aggaacaagc
     4561 catagtttta acgcaaaatg gctttaatcg tattagcttt ggagtgcagg attttgatga
     4621 aaaagttcaa aaagaaattc atcgcatcca gtcttttgaa ttaacacaaa atgctttaaa
     4681 tcttgtaaga aataaaggca taaagtctgt aaatatggat ttaatttatg gtttgcctta
     4741 tcaaaattta caaagcttta cacaaacttt agaaaaagtt atgcttttaa accctgatcg
     4801 tttggcgatt tttaattacg ctcatgtgcc ttggcttaag aaaaatatga gaaaatttga
     4861 tgaaaatacc ttgccaagtc ctgatgttaa acttgaaatt ttagaatttt gtgagaattt
     4921 tttgagtaaa aacggctata aaatgatagg tatggatcat tttgcaaaag aaaatgatga
     4981 gctttttaaa gctttagaaa atggaacttt acatagaaat ttccaaggtt atactactaa
     5041 aggcggtgct gatttagtcg gtgttgggct tacaagtata ggcgaaggac aaagacatta
     5101 tgcgcaaaat tttaaagata tgtcaagtta tgaggctgca ttagatagag gagttttgcc
     5161 ttttgaaaga ggcgtagctt taagcgatga tgatgagctt agaaaagcag tgattatgga
     5221 gttaatggca aattttaagc ttgatatcaa gtcaatagaa aaagaatttt gcattgattt
     5281 tcaggagtat tttaaagagg atttaaaagc tttagaagaa tacaaagatt ttattaattt
     5341 tgatgaaaat tttatcaaag tcaatgaaac aggtgttttg cttataagaa atattgctat
     5401 gtgttttgat gcttatatga aaaacattag tgaagataaa aaagtattct caaaaacggt
     5461 gtaagatgaa atttagtcaa ataagtgatg cttgtgttaa atgtggcaaa tgtatacctg
     5521 tttgtactat acatgaagaa aatcgcgatg aaattaccag tccaagagga tttttagatc
     5581 ttttatctgc ttataaagag ggaattctag agcttgataa agaagctaag aaagtttttg
     5641 aatcttgttt tttatgtacc aattgtgttg aagtatgtcc gagtaaatta agagtagata
     5701 atgccataga agaagttcgt tatgacatag ctaaaaaatt tggtatagct tggtataaaa
     5761 aacttatttt tttcttttta agaagacgca aaattttaga tttggtagct aagcttggct
     5821 atgtgtttca aagttgtgcg tttaaaattc aaaatgagaa tgaaaatata ggtatgaagg
     5881 caagattttc catgcctttt gttaaaaagg gaagattgct tacaaatttt aataaaaaaa
     5941 gtgtcttaaa ttccaatcca aaatttatca ataatgatgg agaaaaaaca ataggttttt
     6001 ttgtaggttg tttggcgaat tatttttaca tagatacggc taatgcagtg cttaaaatcg
     6061 ctagggaatt aaaaatcaat gtggatttga tgaaagaaca agtgtgttgt ggagcaccgc
     6121 aattttttac gggtgatttt aaaagtgttg aagttttggc taaaaaaaat attgagtatt
     6181 ttgaaaaaaa attagaaaaa ttagatgcta ttatagttcc tgaagccact tgttcagcta
     6241 tgttaaagat agattatgaa cattttttta taatgcaaaa tgatttagac tgggcaaaac
     6301 gcgcaaaatg tgtgtcatct aggatatata tggctagcga gtatttttat aaatttactt
     6361 ctttggaaga aattttaaaa acaaaaaata aatttaatta tagcattact tatcacgatc
     6421 cttgccatgc aagaaaaatg caaggggttt ttaaagagcc aagagaactt ttaaaaacaa
     6481 attatcattt tgtagaaatg agtaattcta atacttgttg cggttttggc ggggtgagta
     6541 tgcaaacgga ttattatgat agagctttaa gtgtagggct taaaaaagca caaatgatcg
     6601 atgaaagtaa ggctagtgtg gtaagcgccg agtgttcagc ttgtagaatg caaatttcaa
     6661 atgcattaga acaaaattca agcaaggttg tttttgctag tcctttagaa cttatagcaa
     6721 aagctttgtg atgatgaaga tagtatttaa aggcaaaagt tctgaatatg aaattcaaag
     6781 atcgtgcttt tgtgttgatg cttttgtgat taaagataag attgaagaac gagatggtgt
     6841 tgattttatc acttcaaatg tagatctttt ggaatttagt gatgacagtt ttacttttga
     6901 agaaattgta aaacatttta atatttgtga tactgaagat atgattatcg ttgaagattt
     6961 tgacatgaaa tcaaacaaag ataatcaaaa ccaagaagat gatatagaac acaacatctt
     7021 aaaatccgaa aaaataatac atgaaaacac aaaacaaaca agtat
//
LOCUS       DAPIWJ010000080         6975 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.081, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000080 DAPIWJ010000000
VERSION     DAPIWJ010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6975)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6975)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6975
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.081"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..699
                     /gene="pif1"
                     /locus_tag="RJ259_001393"
     CDS             <1..699
                     /gene="pif1"
                     /locus_tag="RJ259_001393"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HDV7367084.1"
                     /translation="NLEDDYTLLCGINKKVNNINQEKLSKLETPLVCFKAQVKKEDKR
                     IKDEELDSWIRSLNILEELNIKIGARIIFCVNNWDKNYYNGEQGIIEDILYEEEKIYI
                     SIIKNNGMKILLEPYTFFMEELEQSGKDFVVNILASVTQFPIKLAYAITIHKSQGMSI
                     EKLVCDIDHIFENGQLYVALSRATNPNTLKIYSTKKINFGFYFANILKIDSNVIEFYK
                     KHNFLDLEIQEQII"
     gene            709..1443
                     /locus_tag="RJ259_001394"
     CDS             709..1443
                     /locus_tag="RJ259_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367085.1"
                     /translation="MKKIFLSVFLVLSLNAQNLEIDKIRTDLYSKSGANVLKKVEISL
                     EFDGNNLKENENKLIDAVNTVISGFFYEDIFTEIGKNNFKKTLEKFLDKKYKIKLDDI
                     YIISLSGVEKFDLEEFKRFLESTEAKEKGMGSEVKKALENLEVPKTQVPSVEKIPTPS
                     VPNLEVKQVEQLFKDPDEENKNDNGEINIDNLNTPKMTPDIEEKIKRDLIANPPQIFK
                     ENNASKPYHLPQTGYDIKLDENSTQN"
     gene            complement(1440..1949)
                     /gene="lolA"
                     /locus_tag="RJ259_001395"
     CDS             complement(1440..1949)
                     /gene="lolA"
                     /locus_tag="RJ259_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HDV7367086.1"
                     /translation="MKKTFLIFFIFIGQLFALDLNFNTFSSNFTQIVKSKNSTLSYSG
                     HFILSKDQAYWSYDTPSKKEIYINKNQVTIVEHDLEQVIFSHLDNIPNLNEIFKKASL
                     IDKDKLVAKYDNINYTIKLNQEQIQSISYKDEFENDVIINLNNQIKNPKINSDVFKAK
                     IPQNYDIVR"
     gene            2049..4637
                     /gene="secA"
                     /locus_tag="RJ259_001396"
     CDS             2049..4637
                     /gene="secA"
                     /locus_tag="RJ259_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HDV7367087.1"
                     /translation="MFLNALKAVFGTKNDREVKKYFKRVAQINALEGNYQNLSDDELK
                     AEFAKFKEQILSGEKNENDVLNDVFAIVRETGKRTLNMRHFDVQLIGGMVLHDGKIAE
                     MKTGEGKTLVATLPVVLNAMSGKGVHVVTVNDYLAKRDAEQMSAIYNFLGFSVGVVLS
                     SQNSDIEHKQAYDCDITYGTNNEFGFDYLRDNMKFSKAEKVQREHNFVIVDEVDSILI
                     DEARTPLIISGPTNRTLDGYIKANEVAKQMQKGEAVLPPAKPEGDFVVDEKNRNILIT
                     EAGIAKAEKLFGVENLYSLDNAILAHQLDQALKAHNLFEKDVHYVLRNNEVIIVDEFT
                     GRLSEGRRFSEGLHQALEAKENVKIQEESQTLADITFQNYFRMYNKLAGMTGTAQTEA
                     TEFSQIYSLDVISIPTNIPIKRQDKDDLIYKTQNEKFKAVIEEIKKANAKGQPVLVGT
                     ASIERSEVFHNMLVKEKIPHHVLNAKNHEQEALIIQDAGKKGAVTIATNMAGRGVDIK
                     IDDEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGD
                     RIKSIMDRLGIEEGESIESRIVTRAVENAQKKVESLHFESRKHLLEYDDVANEQRKTI
                     YRYRNELLDENYDIRAKISQNIAEYSANVMNDYMLDESGSNVNFENLKAKILYECSTQ
                     ISEKDFENLSVIEMQDKLSQILENSYNEKMLRLEIKELRNIERILYLQVLDNAWREHL
                     YQMDILKTGIGLRGYNQKDPLVEYKKESYNLFLELVNRIKFDSIKLLFSVQFNQEEAQ
                     NLENKANEENEKLLQSSVEMGASEDNLGEAEFKKVPRNAPCPCGSGKKFKECHGKSGP
                     KQGILA"
     gene            4634..5839
                     /locus_tag="RJ259_001397"
     CDS             4634..5839
                     /locus_tag="RJ259_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDV7367088.1"
                     /translation="MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVA
                     MAIMNGFDKEFEKRFFVMNYPITILPKFYAPVNDEFIDELRKTFPNLLFSPYLSTQVV
                     VKGDNRFEGGVLFGVNFNDEKKINEVVAKALKDENLSGFDILVGSALTDEFGLHKNDK
                     LSLIFSNLNPSGFSLVPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGIPKNPN
                     YDGIHVYSDNAFKDVEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRALFIVLMLIIL
                     VASLNIVSSLLMIVMNRRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAF
                     FALWLLGNFDIVTLPVDVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQI
                     NILDTLRNE"
     gene            5862..6647
                     /locus_tag="RJ259_001398"
     CDS             5862..6647
                     /locus_tag="RJ259_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDV7367089.1"
                     /translation="MSLFTQKNKNFKPLKPLSKSKIITNLILLILFLILFCYCSFSIS
                     AYHFDFSAIATYKEKFLQGFLNTLIISFFSLLLSIILGGVFCAFSLSSIVFLRFLSTF
                     YIELVRGTPLLVQVLLIYYIIANNLGLDNRYVAGVIILSCFSAAYLAEIFRAGILSIS
                     ISQLESARALGLKEMQVFAYVIFPQALKNILAPLSGQFANLIKDSSLLSVIAVNELTQ
                     SAQEINSYTFATLEAYVILAITYLVLTLPISIFSRYLERKCQK"
     gene            6709..6784
                     /locus_tag="RJ259_001399"
     tRNA            6709..6784
                     /locus_tag="RJ259_001399"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6742..6744,aa:Lys,seq:ttt)
     gene            6792..6867
                     /locus_tag="RJ259_001400"
     tRNA            6792..6867
                     /locus_tag="RJ259_001400"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6825..6827,aa:Val,seq:tac)
BASE COUNT         2458 a          835 c         1282 g         2400 t
ORIGIN      
        1 aatttagaag atgattatac tttactttgt ggtatcaata aaaaagtaaa caatatcaat
       61 caagaaaaat taagcaaact tgagaccccg cttgtatgct ttaaggctca ggttaaaaaa
      121 gaagataaga gaataaaaga tgaagagctt gattcttgga ttagaagctt aaatatattg
      181 gaagaattaa atattaaaat aggcgctcgt attatttttt gcgtaaataa ttgggataag
      241 aattattata atggagagca aggcattata gaagatattc tttatgaaga ggagaaaatt
      301 tatattagca ttattaaaaa taatgggatg aaaattttac ttgaacctta tacttttttc
      361 atggaagaac ttgagcaatc aggtaaagat tttgttgtta atattctcgc aagtgttaca
      421 cagtttccta ttaaattagc ttatgctatt actatacaca aatcacaagg tatgagtatt
      481 gaaaaattag tgtgtgatat tgatcatatt tttgaaaatg gacagcttta tgtcgctctt
      541 tctcgcgcta caaacccaaa tactttaaaa atttattcta caaaaaagat aaattttgga
      601 ttttattttg ctaatatttt aaaaatagat tctaatgtga ttgaatttta taaaaaacat
      661 aattttttag atctcgaaat acaagaacaa atcatttaaa ggcattaaat gaaaaaaata
      721 tttttaagtg tttttttggt tttgagttta aatgctcaaa atcttgaaat agataaaata
      781 agaacagatt tgtattctaa aagtggagca aatgttctta aaaaagttga aatttctttg
      841 gaatttgatg ggaataattt aaaagaaaat gaaaataagt taattgatgc tgtaaataca
      901 gtaatttcag ggttttttta tgaagatatt tttacagaaa ttggaaaaaa taattttaaa
      961 aaaactttag aaaaattttt agataagaaa tataagatta aactagatga tatatatatc
     1021 atatctttaa gtggagtgga aaaatttgat ttagaggagt ttaaacgctt tttagaaagt
     1081 actgaggcta aagagaaggg tatgggtagc gaggtaaaaa aagcacttga aaacttagaa
     1141 gttcctaaaa ctcaagttcc tagtgttgaa aagatcccaa ctcctagtgt tccaaattta
     1201 gaagtcaagc aagttgaaca gcttttcaaa gatccagatg aagaaaataa aaatgacaat
     1261 ggagaaatca atatagataa tttaaataca cctaaaatga ctccagatat agaagaaaaa
     1321 attaaaagag atttaatcgc caatcctcca caaatattca aagaaaataa cgcaagcaag
     1381 ccttatcatt tgccacaaac aggctatgat ataaagcttg atgagaattc aacgcaaaat
     1441 tagcgaacta tatcataatt ttgcggaatt tttgccttaa aaacatcgga attaattttt
     1501 ggatttttaa tttgattgtt tagattgatt ataacatcat tttcaaattc atctttatag
     1561 gatatgcttt gaatttgctc ttgattgagt ttaattgtat aatttatatt atcatatttt
     1621 gctacaagtt tatctttgtc tataagactt gcttttttga aaatttcatt aagatttgga
     1681 atgttatcaa gatgagagaa aatgacttgt tctagatcgt gctctactat ggttacttga
     1741 tttttgttga tataaatctc ttttttacta ggagtatcat aactccaata tgcttgatct
     1801 ttactcagta taaaatgccc agaataagaa agtgtagagt ttttggattt cactatttgg
     1861 gtaaaattgc ttgaaaaggt attaaaatta agatcaaggg caaaaagttg tcctataaaa
     1921 ataaaaaata tcaagaatgt ttttttcatt tattttcctt aaaaaaatat attttttatg
     1981 tcattctagc taattttaat taaataatcg ttataatgat agcttgaaaa atttataaag
     2041 gtttagaaat gtttttaaat gctttaaaag ccgtgtttgg cacaaaaaat gatcgtgaag
     2101 ttaagaaata tttcaagcgt gtagcacaaa tcaatgcttt agaaggcaac tatcaaaatt
     2161 taagcgatga tgaattaaaa gctgaatttg caaaatttaa agagcaaatt ttaagcggag
     2221 aaaaaaacga aaatgatgtt ttaaatgatg tttttgctat agtcagagag acaggtaaga
     2281 gaactttaaa tatgcgtcat tttgatgtgc agttaatcgg tggtatggtt ttgcacgatg
     2341 gaaaaatcgc agaaatgaaa acaggagaag gtaaaactct tgtagcgacc ttacctgttg
     2401 ttttaaatgc catgagtggc aaaggcgtac atgtcgttac agtaaatgat tatctagcca
     2461 aaagagatgc tgagcaaatg agtgcgattt ataatttttt aggttttagt gttggcgtgg
     2521 tgctttcttc tcaaaatagt gatatagaac acaagcaagc ttatgattgt gatattactt
     2581 atggaaccaa taatgagttt ggttttgatt atttgcgtga taatatgaaa ttttcaaaag
     2641 ctgaaaaagt tcaaagagag cataattttg ttatcgtaga tgaagtagat agtattttaa
     2701 ttgatgaggc aagaactccg cttatcatca gtggtcctac aaatcgtact ttagatggtt
     2761 atattaaagc caatgaagta gctaaacaaa tgcaaaaagg tgaagcagtt ttaccccctg
     2821 caaaacctga gggtgatttt gtagtagatg agaaaaatcg taatatttta attacagaag
     2881 caggtattgc taaggctgaa aaactttttg gcgtagaaaa tttatacagt cttgataatg
     2941 ctatcttagc tcatcagctt gatcaagcct taaaagcaca taatcttttt gaaaaagatg
     3001 tgcattatgt tttaagaaat aatgaagtta tcattgttga tgaatttaca gggcgtttaa
     3061 gcgaaggacg tcgttttagc gaaggattgc atcaagcttt agaagctaaa gaaaatgtaa
     3121 aaattcaaga agaaagccaa actctagcag atattacttt tcaaaattat tttagaatgt
     3181 acaataaact tgcaggtatg acaggaactg cacaaacaga agcgactgaa ttttctcaaa
     3241 tttatagttt agatgttatt tctataccga caaatattcc tattaaaaga caagataaag
     3301 atgatcttat ctataaaact caaaatgaaa aattcaaagc tgtaattgaa gagattaaaa
     3361 aagccaatgc taaaggtcag cctgtacttg taggaaccgc aagtatagag cgcagtgaag
     3421 tttttcacaa tatgcttgta aaagagaaaa tccctcatca tgttttaaat gctaaaaatc
     3481 acgagcaaga agctttgatt atccaagatg caggtaaaaa aggtgctgta actatcgcta
     3541 caaatatggc aggtcgtggt gtggatataa aaatcgatga tgagattagg gctttgggtg
     3601 ggctttatat catcggtaca gaaagacatg aaagccgccg tattgataat caacttcgtg
     3661 gtcgtgcagg aaggcagggt gatcctggaa taagtcgttt ttatctaagt ttagaagata
     3721 atcttttaag aatttttggt ggggatcgta ttaaaagtat tatggatcgc ttgggcatag
     3781 aagagggcga aagcatagaa tcaagaatcg ttacaagagc ggttgaaaat gcgcaaaaaa
     3841 aagttgaaag cttgcatttt gaaagcagaa agcatttgtt agaatacgat gatgtagcaa
     3901 atgaacaaag aaaaactatt tatcgttatc gtaatgagct tttagatgaa aactatgata
     3961 ttagagctaa aatttctcaa aatatcgctg aatatagcgc aaatgtaatg aatgattata
     4021 tgcttgacga aagcggttct aatgtaaatt ttgaaaattt gaaagcaaaa attttgtatg
     4081 aatgttcaac tcagattagt gaaaaagatt ttgagaattt aagcgtcatt gaaatgcaag
     4141 acaagctaag tcaaattctt gaaaattctt ataatgaaaa gatgttaaga cttgagatta
     4201 aagaattgcg taatatagag cgtattttat atttgcaagt tttggataat gcttggagag
     4261 agcatttgta tcaaatggat attttaaaaa caggaatagg acttcgtgga tacaatcaaa
     4321 aagatcctct tgtggaatat aagaaagaaa gttataatct tttcttggag ttggtcaatc
     4381 gtattaaatt tgatagtatt aaactacttt ttagcgtgca atttaatcaa gaagaggcgc
     4441 aaaatttaga aaataaagcc aatgaagaaa atgaaaagct acttcaaagc tcagtagaaa
     4501 tgggcgcaag cgaagataat cttggcgaag ctgaatttaa aaaagttcca cgcaatgctc
     4561 cttgtccttg cggaagtgga aaaaaattta aagaatgcca tggaaaaagt ggtcctaagc
     4621 aaggaatttt agcttgaata aaagcgtttt aaaatattta ctttttaagt atttaagatt
     4681 tgataaagag caacccttta tcaatctttc tatgcttttg gcctttttag gagtttgtgt
     4741 aggactttgc gttttgcttg tagctatggc aattatgaat ggttttgata aagaatttga
     4801 aaaacgcttt tttgtgatga attatcctat tactattttg cctaaattct acgctcctgt
     4861 aaatgatgaa tttatagatg agttaagaaa aacatttcca aatttgttat ttagccctta
     4921 tttaagcact caagttgttg taaagggaga taatcgtttt gaaggtggtg tgctttttgg
     4981 cgttaatttt aatgatgaaa aaaaaataaa cgaagtggtt gctaaagctt taaaggatga
     5041 gaatttaagt ggttttgata tacttgtagg atcagcactt actgatgaat ttggtttgca
     5101 taaaaatgac aaactttcac ttattttttc aaatcttaat cctagtggat tttctttagt
     5161 accgcaaact aaacgttttg atgttaaagc gcgttttact tcagggcttg cattttatga
     5221 taaagcttat atgtacacag atgttgatgc attgaaaaaa gtacttggaa tacctaaaaa
     5281 tccaaattat gatggaattc atgtatatag cgataatgct tttaaggatg ttgaaaaaat
     5341 taaatcttat ttaaaagatg attatgctgt ggtgggttgg tgggagcaaa ataaaaattt
     5401 tttttcagcc ttagaacttg aaaaaagagc gctttttata gtgttgatgc ttattatttt
     5461 ggttgcaagt ttaaatatag taagttcttt attgatgata gtaatgaatc gtcgcagtga
     5521 aatagcactt ttacttgctc taggtgcaag caaaaatgag gtaaaaaaga gtttttttgc
     5581 cttaggtatg cttattggtg gtggtggtat gatagtgggt gtggtacttg cattttttgc
     5641 tttatggctt ttgggaaatt ttgatattgt aactttacct gttgatgttt atggaaccag
     5701 taaattacca cttgatttgt ctttaatgga tttttcttta accattgtgg gtgctttaat
     5761 aatcatagct ttatcatctt tttatcctgc aaaaaaagca actcaaatta atattttaga
     5821 tactttaaga aatgaataaa ttgtaatttt ggagattttt attgtctttg tttactcaaa
     5881 aaaataagaa ttttaaacct ttaaaacctc tatcaaagtc aaaaataatc actaatttaa
     5941 ttcttttgat tttattttta atattgtttt gttattgtag ttttagtata agtgcttatc
     6001 attttgattt tagcgcaatt gcaacctata aagaaaaatt tcttcaaggt tttttaaata
     6061 ctttaataat cagttttttt tctttattgt tgagtataat tttgggtgga gttttttgtg
     6121 ctttttcttt aagttcgatt gtttttttaa gatttttatc tacattttac atagagcttg
     6181 tcagaggaac ccctttacta gtgcaggtat tattgatata ttatatcatt gcaaataatt
     6241 taggacttga taatcgatat gtggctggag ttattatttt atcatgtttt tctgctgctt
     6301 acttagctga aatatttaga gctggaattt taagtatttc tatatctcag cttgagagcg
     6361 ctagggcttt agggttaaaa gagatgcagg tttttgcgta tgtaattttt ccccaagctt
     6421 taaaaaatat tttagcaccg ctgagtggac aatttgcaaa tttaattaaa gatagttcct
     6481 tattaagcgt tattgctgta aatgaattaa cccaaagtgc gcaagagata aattcttata
     6541 cttttgctac tcttgaagct tatgtaattt tggctattac atatcttgtt ttgactttac
     6601 ctataagtat attttctcgt tatttggaga gaaaatgcca aaaatgattt aaaaaagctt
     6661 gacaaataga gctaattttg gcataatcac atttttattt cagaaaatgt ctcgttagct
     6721 cagccggtag agcatctccc ttttaaggag ggggccgttg gttcgaatcc aacacgggac
     6781 accattataa aggtcgctta gctcagttgg tagagcgcca cccttacaag gtggatgtca
     6841 taagttcgag tcttatagtg accaccattt tataaaatca taaataggtt ttataatctc
     6901 tacttcttta ctttggatgc agcggtagtt cagctggtta gaatgccgcc ctgtcacggc
     6961 ggaggtcgcg ggttc
//
LOCUS       DAPIWJ010000081         6783 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.082, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000081 DAPIWJ010000000
VERSION     DAPIWJ010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6783)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6783)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6783
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.082"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            103..387
                     /locus_tag="RJ259_001401"
     CDS             103..387
                     /locus_tag="RJ259_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HDV7367090.1"
                     /translation="MAVKITDICIACGSCIDECPVNAIVDDTNNPEGEDRYYVYANKC
                     VECVGHNDQPACASACPTDGCIVWSAVESGQPSRDNIGADMRSGDTPVFA"
     gene            500..913
                     /gene="ndk"
                     /locus_tag="RJ259_001402"
     CDS             500..913
                     /gene="ndk"
                     /locus_tag="RJ259_001402"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HDV7367091.1"
                     /translation="MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQ
                     AENFYAVHKERPFFKDLVEFMISGPVVVSILEGEGAVLKNRDLMGATNPKEAKAGTIR
                     ADFAESIDANAVHGSDSLENAKIEIEFFFKPNEIC"
     gene            914..1264
                     /locus_tag="RJ259_001403"
     CDS             914..1264
                     /locus_tag="RJ259_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367092.1"
                     /translation="MKIPFSKINTKEYPFKLNLENMIFEGNLVKINPKLVKINAIMQG
                     FIYRPCDSCGTELELEIKENLELFASDGIFKDEANKLSNTIEFFDGHIDLIEVAISEL
                     EAYLSDYFYCINCK"
     gene            1292..1438
                     /gene="rpmF"
                     /locus_tag="RJ259_001404"
     CDS             1292..1438
                     /gene="rpmF"
                     /locus_tag="RJ259_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HDV7367093.1"
                     /translation="MAVPKRRVSKTRAAKRRTHYKVSLPMPIKDKDGSYKMPHRANPT
                     TKEY"
     gene            1444..2430
                     /gene="plsX"
                     /locus_tag="RJ259_001405"
     CDS             1444..2430
                     /gene="plsX"
                     /locus_tag="RJ259_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HDV7367094.1"
                     /translation="MINIAIDAMGGDFGEKPIIEGVLKALETKPFNAILVGNSKILKP
                     LIPKKLEQYIQYEEASEIFSMNGNATDALKNKETTIYKAINLLKEKKVDAVVSAGHSG
                     ASMSLATLKLGRLKGISRPAIATLMPNIVNKTLLLDVGANTDCKAENLFQFAIMGEVY
                     AREIMQIQKPRLALLSNGEEECKGNELTKESHQLMKKIPNFIGNAEGRDIFNGEIDVL
                     VCDGFDGNVILKACEGVATAIFQLLKNEVKQSFISKIGALLMKPSFKKLKKHTDWQEY
                     GGAPLLGVNGCVIISHGKSDSRAIKNAIFQAINFSQSHINKFIENELGKYNA"
     gene            2423..3397
                     /locus_tag="RJ259_001406"
     CDS             2423..3397
                     /locus_tag="RJ259_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HDV7367095.1"
                     /translation="MLKASLKSIASYIPEKILSNADLEKMVDTTDEWITRRTGIKERR
                     IASENENTSDLGTKAALKAIERANLKPEDIDAILVATLSPDYFTMPSTACKIASNLGL
                     VNISAFDISAACSGFIYLLEQAKALVESGLKKNVLIIGAEKTSSIMDYNDRSICILFG
                     DGAGAGVVSLDNENHILDVHTASNGNYGDLLMTQRSQKSSLCQTLSMQMKGNEVFKIA
                     VNTLSNDVVEILAKNNILAQEIDLFIPHQANLRIIKAVQEKLNLSDEKCVITVQKYGN
                     TSAASIPMAMNDAYEEGRLKKGNLILLDAFGGGFTWGSALLKFGGENF"
     gene            complement(3394..3744)
                     /locus_tag="RJ259_001407"
     CDS             complement(3394..3744)
                     /locus_tag="RJ259_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDV7367096.1"
                     /translation="MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALA
                     ELDALFEKIGANKGDLIQIQIWLANMQDFDAMNEIYDAWIKNYPKPVRACVGSALAEG
                     YLVEIQAFGKLREN"
     gene            complement(3741..4817)
                     /gene="serC"
                     /locus_tag="RJ259_001408"
     CDS             complement(3741..4817)
                     /gene="serC"
                     /locus_tag="RJ259_001408"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HDV7367097.1"
                     /translation="MRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKV
                     FEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLALNGVCEYANTGVWTK
                     KAIKEAQILGVNVKTVASSEESNFDHIPRVEFSDNADYAYICSNNTIYGTQYQNYPKT
                     KTPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS
                     MLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDL
                     SNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASI
                     YNALNLDQVKTLCEFMKEFQGKYA"
     gene            complement(4827..5990)
                     /locus_tag="RJ259_001409"
     CDS             complement(4827..5990)
                     /locus_tag="RJ259_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HDV7367098.1"
                     /translation="MTPTELNLKAKALLETHFDDIVLSGEISKITLHGSGHWYFDLKD
                     ERSSIACAMFKGANLKVGFKPAVGDFLELCGSVSLYPESGRYQFIATSMKKAGFGDLE
                     AQFLALKERLQKEGLFDPRFKKSLPKFPKKVGIITSKTSAALQDMLKLIHQKEYFLAK
                     IYIFDALTQGNNAPFSLIQALKKADDMDLDVLIIARGGGSREDLFCFNDENLAREIFK
                     AKTPIISAIGHEIDYVISDFVADFRAPTPSAAIDTLFYSKLDIEQSLDLMEEKLMQLW
                     NYKIQNYENLLLNLSKFFKFNSLPKIIDEKIKQSHNIEKQLNHLLANQMRYNELKLDK
                     LQNAYLQHENFFNKSKKFICIRKNGKIANLEDLKSDDIVILSSQTSQKEAKIL"
     gene            complement(5987..6694)
                     /gene="ubiE"
                     /locus_tag="RJ259_001410"
     CDS             complement(5987..6694)
                     /gene="ubiE"
                     /locus_tag="RJ259_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HDV7367099.1"
                     /translation="MQKQEKIIEMFNQIAPTYDKANRILSFGADVAWRKKACQRVMSL
                     YLKKDLKIADIACGTGDMIEIWQESALKMEKNILNIKGIDPSSGMLNVAKEKFPNVEF
                     IKAGAQNLPLESQSLDILSISYGIRNVVERQKALSEFARVLQKDGILVVLEFTKREKG
                     GFIAACRDFYLKNILPSIGGIISKNKSAYEYLPNSIEGFLSKKEFILELKNAGFEMLD
                     YKSFSFGVSSMFIAKKL"
BASE COUNT         2373 a         1090 c          996 g         2324 t
ORIGIN      
        1 ttataattat catcaaataa ggtaaatttt tgattatcaa aatttacctt atttaagaat
       61 tttatgctaa aatcttttaa atatattaaa taaggagaaa aaatggctgt aaaaattaca
      121 gatatatgta ttgcttgtgg ttcttgtatt gatgagtgtc cagtgaatgc tatcgttgat
      181 gatactaaca atccagaagg tgaagataga tattatgtct atgcaaacaa atgcgttgaa
      241 tgcgtaggac ataatgatca accagcttgt gctagtgctt gcccaacaga tggatgtata
      301 gtttggagtg ctgtagaatc aggacaacca agtcgtgata atattggtgc tgatatgaga
      361 agtggggaca ctccagtttt tgcataattt taaaaaatta aaaagctaga gattcctagc
      421 tttttctttt aatttaactt tctttaaaca aattcaagta taattttaag ctttattaaa
      481 ataaggagtt attacaaaga tggaaaaaac tttatctata attaaacctg atgctgttaa
      541 aaaaggtgtt ataggaaaaa ttttagatcg ttttgaaagc aatggattaa gaatcgctgc
      601 aatgaaaaaa gttcaactta gtaaagaaca agctgaaaat ttttatgctg ttcataaaga
      661 aagacctttt tttaaagact tggttgaatt tatgattagc ggtcctgttg ttgtttctat
      721 actagaagga gaaggtgctg tattgaaaaa tagagattta atgggagcaa caaatcctaa
      781 agaagctaaa gcaggaacaa ttagggctga ttttgctgag agtattgacg ctaatgctgt
      841 tcatggaagc gatagcttag aaaatgcaaa aatagaaatt gaatttttct ttaaaccaaa
      901 tgaaatttgc taaatgaaaa tccctttttc taagattaat acaaaggaat atccttttaa
      961 acttaatctt gaaaatatga tttttgaggg aaatttagta aaaataaatc ctaagcttgt
     1021 taaaataaat gctattatgc aaggttttat ctatagacct tgtgatagtt gtggaactga
     1081 gttagaactt gaaattaaag aaaatttaga actttttgca agtgatggta tttttaaaga
     1141 tgaagcaaac aaattgagca atactataga atttttcgat ggacatattg atttaataga
     1201 agttgctatc agcgagcttg aagcttattt gagtgattat ttttattgca taaattgcaa
     1261 ataattaatt aaattttata aaggagaaaa aatggcagta ccaaagagaa gagtgagcaa
     1321 aactcgtgca gctaaacgca gaactcacta taaagttagt cttcctatgc ctataaaaga
     1381 caaagatgga agctacaaaa tgcctcaccg tgcgaatcca acaactaagg aatattaaaa
     1441 tcaatgatta acattgccat tgatgcaatg ggtggtgatt ttggagaaaa acccattata
     1501 gaaggcgttt taaaggcact agaaacaaaa ccttttaacg ctatcttagt gggaaattct
     1561 aaaattctaa aacctttaat accaaaaaaa ttagaacaat atatacaata cgaagaagct
     1621 agtgaaattt tttcgatgaa tggaaatgcc acagatgctt taaaaaataa agaaacaacc
     1681 atatacaaag ctattaattt attaaaagaa aaaaaagtag atgctgtagt ttcagcgggt
     1741 catagtggag caagtatgtc tttggctacc ttaaagcttg gaagacttaa aggtatttca
     1801 agacctgcta ttgccacttt aatgccaaat atcgttaaca aaactttact tttggatgtt
     1861 ggagctaata cagattgtaa agctgaaaat ttatttcaat ttgccataat gggtgaagtt
     1921 tatgctagag aaatcatgca aattcaaaaa ccacgccttg ctttactttc taatggtgaa
     1981 gaagaatgca aaggtaatga acttaccaaa gaaagtcatc agcttatgaa aaaaattcca
     2041 aattttatag gtaatgctga aggtagagat attttcaatg gtgaaataga tgttttagtc
     2101 tgcgatggtt ttgatggaaa tgttatctta aaggcttgtg aaggtgtggc aacagctatt
     2161 tttcaacttc taaaaaacga agtaaagcaa tcttttattt ctaaaatagg tgctttactt
     2221 atgaagccat cttttaaaaa attaaaaaaa cacacagatt ggcaagaata tggcggagca
     2281 ccccttcttg gagttaatgg ctgcgtgatc ataagtcatg gaaaaagcga ttctagagct
     2341 attaaaaatg caatttttca agctataaat tttagccaat ctcatatcaa taaatttata
     2401 gaaaatgaac ttgggaaata caatgcttaa agccagtctt aaaagtatag cttcttatat
     2461 tccagaaaaa attttaagca atgctgatct tgaaaaaatg gtagatacca ccgatgaatg
     2521 gatcactaga cgcacaggta ttaaagaaag gcgcattgct agtgaaaatg aaaatactag
     2581 cgatttgggc acaaaagctg cattaaaagc catagaaaga gcaaatttaa aacctgaaga
     2641 tattgatgcg attcttgtag ctactttaag tcctgattat tttactatgc cttcaacggc
     2701 ttgtaaaatt gcttcaaatt taggacttgt aaatattagc gcttttgata tttcagcagc
     2761 ttgttctggt tttatctatt tgcttgaaca agctaaagcc ttagtagaaa gtggtttgaa
     2821 aaaaaatgtt ttaatcatag gagctgaaaa aacaagttca attatggatt acaatgacag
     2881 aagtatttgc atactctttg gagacggtgc aggtgctgga gttgtaagtt tggataatga
     2941 aaatcatatc cttgatgtac atactgcaag caatggtaat tatggagatc ttttaatgac
     3001 tcaaagatcg caaaaatcaa gcctatgtca aacactttct atgcaaatga aaggcaatga
     3061 agtttttaaa atagcagtaa acacgcttag taatgatgtt gtagaaattt tagctaaaaa
     3121 taacatttta gcacaagaaa ttgatctttt tattcctcat caagctaatc tacgcatcat
     3181 taaagccgtc caagaaaaac tcaatctaag cgatgaaaaa tgtgtgatca ctgtacaaaa
     3241 atatggcaat acttcagctg cttctatacc tatggcaatg aatgatgcct atgaagaagg
     3301 tcgacttaaa aaaggaaatc tgatcttact agatgctttt ggcggtggtt ttacttgggg
     3361 atctgcgctt ttaaaatttg gaggagagaa tttttaattc tctcttagct ttccaaaagc
     3421 ttgaatttct accaaataac cctctgctaa agcacttcct acacaagctc taacaggttt
     3481 aggataattt ttaatccaag catcataaat ttcattcatt gcatcaaaat cttgcatatt
     3541 agctaaccag atttgaattt gaatcaaatc tcctttgttt gcgcctattt tttcaaacaa
     3601 agcatcaagt tctgcaagcg cttctttagt ttgtttttta atatctccgc taggttcaaa
     3661 agccacttgt cctgcagtct taaaatattt atcaaaaaca ataatttgcg acattctatc
     3721 gcactcatca aaacgcttta tcatgcatat tttccttgaa attctttcat aaattcacac
     3781 aaggttttta cctgatccaa attaagcgca ttataaatac ttgcacgaat tcctcctaaa
     3841 attctatgtc ctttaagtcc tatcattcca gcttcttcgg cttcctttac aaaaagaggc
     3901 tctaaatctt tatttttagc aatattaaaa ctcacattca ttaaagatct atccttttta
     3961 tctgcatgtc ctttataaaa tccattactt aaatcaatac attcataaag catagtagct
     4021 ttttgagaat ttttctcatg cactttatca agcccacctt gatttaaaag ccaatccatt
     4081 tcaagattaa acatataaat ggcaaaggtt ggaggcgtgt taaacaagga ctgattctca
     4141 gcatgagtca aataatttaa catactagga atttgtttat ttttagatct ttctaacata
     4201 tctttacgga taaaaataca acttaaaccc gaaattccag catttttttg cactccgcca
     4261 taaaaaagag caatatttga aaaatctact tttctagaaa aaaaatcact cgatgcatcc
     4321 acaatcaaag gagttttagt tttaggataa ttttgatatt gagtgccgta aatagtattg
     4381 ttagaacaaa tataagcata atcagcatta tcgctaaatt ccactctagg aatatgatcg
     4441 aaattacttt cctcactact tgctacggtt ttaacattga cacctaaaat ttgtgcttct
     4501 ttaatcgctt tttttgtcca aactcctgta tttgcatatt cacaaacccc atttaaagct
     4561 aaattcatag gaatcatagc aaattgcaaa cttgctccac cttgtaaaaa taatacttca
     4621 taatcatcat ttaactcgta aagtttttta gctttctctt gtgctccaaa atgcacttct
     4681 tcaaatactt ttgtgcggtg agaaatttcc attatagaat aacccctacc ctgataatca
     4741 cagagttctt tttgagcttg ctctaaaatt tctaaaggta aagtcgatgg ccctgcactg
     4801 aaattgattt ttctcataat ctatccttat aaaatttttg cttctttttg agaagtttga
     4861 gaacttaaaa taacgatatc atcactctta agatcttcta aatttgctat tttaccattt
     4921 tttctgatac aaataaactt tttgctttta ttaaaaaaat tctcatgttg caaataagca
     4981 ttttgcaatt tatctaattt taattcatta taacgcattt gatttgccaa tagatgattt
     5041 aattgctttt ctatattatg gctttgtttt attttttcat ctattatttt tggcaaagaa
     5101 ttaaatttga aaaatttgct taaatttaaa agcaaatttt cataattttg tattttataa
     5161 ttccaaagtt gcattaattt ttcttccatt aaatccaaac tttgctctat atccaactta
     5221 gaataaaaca aagtatctat agcagctgaa ggcgttggag ctctaaaatc tgcaacaaaa
     5281 tcactaataa cataatcaat ctcatgtcct atggctgaaa taataggagt ttttgcttta
     5341 aaaatctctc ttgctaaatt ttcatcatta aaacaaaaaa gatcttccct gcttcctcca
     5401 ccacgtgcta taataagaac atctaaatcc atatcatcgg ctttttttaa agcttgtata
     5461 agagaaaaag gagcattatt tccttgagtt aaagcatcaa aaatataaat ttttgccaaa
     5521 aaatattctt tttgatgaat aagttttaac atatcttgca aagcagcaga agtttttgaa
     5581 gttataatac ctactttttt aggaaatttt ggcaaagatt ttttaaagcg tggatcaaaa
     5641 agtccttctt tttgcaaacg ctcttttaaa gccaaaaact gtgcttccaa atccccaaaa
     5701 cctgcttttt tcatactagt agcgataaat tgataacgac cgctttcagg atataaactc
     5761 acacttccac aaagctctaa aaaatccccc accgctggtt taaacccgac ttttaaatta
     5821 gctcctttaa acatagcaca agcaatgctt gatctttcat cttttaaatc aaaataccaa
     5881 tgccctgaac catgcaaagt aatttttgaa atttctccac ttaaaactat atcatcaaaa
     5941 tgtgtttcta ataaagcctt tgctttaaga tttaattctg ttggtgtcat agtttttttg
     6001 ctataaacat tgaactcacg ccaaagctaa aacttttata atcaagcatt tcaaaaccag
     6061 catttttaag ttctaagatg aattctttct tacttaaaaa tccttcaata gagtttggca
     6121 aatactcata agcactttta tttttactga ttatcccacc tatacttggt aaaatatttt
     6181 taagataaaa atctctacaa gctgctataa atccaccctt ttctcttttt gtaaattcca
     6241 aaactaccaa aataccatct ttttgaagta ctctagcaaa ttcgcttaag gctttttgtc
     6301 tttctacaac attgcgaatg ccataactaa tacttaaaat atctaaactt tgactttcta
     6361 aaggtaaatt ttgcgcccct gcttttataa attcgacatt tggaaatttt tcttttgcaa
     6421 catttagcat gccactactt ggatcaatac ctttaatatt taaaatattt ttttccattt
     6481 ttaaagcact ctcttgccaa atctctatca tatcccctgt gccacaggca atatcagcga
     6541 tttttaaatc tttttttaaa tacaaactca tcactctttg acaagctttt ttgcgccacg
     6601 ctacatcagc tccaaagctt aaaattctat tcgccttatc ataagtaggt gcaatttgat
     6661 taaacatttc tataattttt tcttgttttt gcatttttat cctttgtaaa ttttcaaatt
     6721 tttacttgat tttttaagca atttgcaaaa tttattttta ttattgatta ttttggaaaa
     6781 aat
//
LOCUS       DAPIWJ010000082         6758 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.084, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000082 DAPIWJ010000000
VERSION     DAPIWJ010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6758)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6758)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6758
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.084"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..208
                     /locus_tag="RJ259_001411"
     CDS             <1..208
                     /locus_tag="RJ259_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367100.1"
                     /translation="LNINGAFFEFLNDKLKHYEKNQKSKLESLEKVLQSLKNQDANIL
                     NSFEENLEKIEKLKQLEMGLLNAD"
     gene            198..2027
                     /locus_tag="RJ259_001412"
     CDS             198..2027
                     /locus_tag="RJ259_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HDV7367101.1"
                     /translation="MQINLLNDFIKAYENTYSVSFDDSFKGRIQELCKELNEPFMHAS
                     YALENELKELVFSLDKNVNIAIIGQFSSGKSSLLNLILGRDCLPTGVVPVTFKPTFLR
                     YAKEYFLRVEFEDGSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTP
                     GLNANENDTLTTLDELKNIHGAIWLSLIDNAGKKSEEDAIKANLELLGENSICVLNQK
                     DKLSAEELDNVLNYAKSVFLKYFNELIAISCKEAKDEQSYEKSNFQSLLDFLTQLDTT
                     VLKEKFVKRKILNLCEILEDENQLFVGIFDRLLNQFQSYEKHLLLAYENFLKEIEILN
                     HQILEQLKSISERISSEIFASVKEKDAYFYKESKGFLKKDLYTRYDYKAPYISSDDAF
                     LAMFYNSDVMSKEFKKIKNELYKSFEEIKMKLKDFINILEREILLFKAEFSNIQKDHI
                     FQSDKNFSELRAFCNASDEYFLKDFKELLFKSILELDLFFEKLNLKAFTNYENATKLS
                     LAFFSRKINESRVLYELDSSEFVLFYPKKSEIYERVLNELNVYEFETLLINKPILTKI
                     AKNFLEQSQNLIQEKNKFLDLKKAELQKRRAQILNVRESIKED"
     gene            2027..2731
                     /locus_tag="RJ259_001413"
     CDS             2027..2731
                     /locus_tag="RJ259_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HDV7367102.1"
                     /translation="MRIFLTLFLFFNSLFALSELEEGLKLYEANKFDKAYEIFKSLCE
                     KDISKACFSLAFMHESARGVSKDLNQAYKFYDKACKLGLANACSNMALLLQNQGYENE
                     ALLAFNKACTLGESLSCNNIALFYEKEKDGQMASSFYKRSCDLKNARACYQLGSLYDK
                     GELVKASVKSALAFYSKSCTLGFGEACYLLGRYNQLEKQDLTKAKRYFGMACDQKHQE
                     ACAAYKELNSKDIELY"
     gene            2867..3596
                     /locus_tag="RJ259_001414"
                     /pseudo
     CDS             2867..3596
                     /locus_tag="RJ259_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343851.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
     gene            3598..5319
                     /locus_tag="RJ259_001415"
     CDS             3598..5319
                     /locus_tag="RJ259_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HDV7367103.1"
                     /translation="MAEVLKKVDVVTVGAGWTGGIVAAELTKAGLNVLSLERGHMQST
                     ENFNYIHDEWRYGINYGLMQDCSKDTVTFRHDPSGLALPYRKMGSFLLGNNVGGAGVH
                     WNGWTFRFMPYDFEIQTLSKQRYGNKLGNDYTLQDWGVTYKDMEPYYDRFEKTCGVSG
                     EPNPLAEKMGAFRSSPYPQEPLENTKMLKRFESAAKSSNLHTYRLPASNSKGGYTNPD
                     GQDLAPCQYCAYCERFGCEYGAKASPLNTVIPKAMSTGKYTIRTYSNVTQILKKDGKV
                     TGVKFVDTRTMKEYIQPADIVVLTSYMFNNAKLLMVSNIGEQYDPKTGKGTLGRNYCY
                     QMNMGTTAFFDEQFNTFMGSGALGTTSDDFNGDNFDHSKEKFLHGAMIYSVQLGTRPI
                     QSAPLPAGAPTWGAEFKKALNYNFTRAITVGGQGASLPHKNNYLSLDPTYKDAFGMPL
                     LRLTYNFTDQDRALHKFITDKTAEVAKRMQGVKSIKKGAYLKDYSVVPYQSTHNTGGT
                     TMGADRETSVVNTYLQHWDADNLFVVGAGNFQHNSGYNPTDTVGALAYRCAEGILKYH
                     KSGKSLA"
     gene            5608..5800
                     /locus_tag="RJ259_001416"
                     /pseudo
     CDS             5608..5800
                     /locus_tag="RJ259_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857465.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(5878..6582)
                     /locus_tag="RJ259_001417"
     CDS             complement(5878..6582)
                     /locus_tag="RJ259_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367104.1"
                     /translation="MQISSSYNSYDYYSSKPSFDKTNQSDSTQKDEKNLSENKDDKEK
                     NGEQTQMVNGVELSQKEVAQVRELQSIDRNVKAHEAAHQAAGGGLAGAASFTYTRGPD
                     NQMYATAGEVPISMQKGNTPEETIANARQIAAAAMAPADPSPQDYKVAANATKMEFEA
                     RAEAMKLKAEEAKEKEEENKEKDDKNSENSLEKTDKDSKNNDKNSNFDKDFKNLVTRT
                     YQQNSQNNDIKFSIAS"
     gene            6690..>6758
                     /locus_tag="RJ259_001418"
     CDS             6690..>6758
                     /locus_tag="RJ259_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HDV7367105.1"
                     /translation="MIYENDLIYIEKEEAQVPWLKIF"
BASE COUNT         2381 a          845 c         1223 g         2309 t
ORIGIN      
        1 tttaaatatc aatggagcat tttttgagtt tttaaatgat aaattaaaac attatgaaaa
       61 aaatcaaaaa tcaaaattag aaagtcttga aaaagtttta cagagtctga aaaatcaaga
      121 tgctaatatt ttaaattctt ttgaagaaaa tttagaaaaa attgaaaaat taaaacaact
      181 tgaaatgggg cttttaaatg cagattaatc ttttaaatga ttttataaaa gcctatgaaa
      241 atacctatag cgtgagtttt gatgatagtt ttaaagggcg tattcaagag ctttgcaagg
      301 aacttaacga gccttttatg cacgcaagtt atgctttaga aaatgaatta aaagagcttg
      361 tgttttcttt ggataagaat gttaatatcg ctattatagg gcagttttca agtggtaaat
      421 caagtttgct aaatttgatc ttagggcgtg attgtttgcc tacgggtgtt gttcctgtta
      481 cttttaaacc tactttttta cgctatgcaa aagaatattt tttaagagta gaatttgaag
      541 atggaagtga tattatcaca aatatagaaa aattagcctt ttatacggat caaagaaatg
      601 aagtaaaaca agcaaaaagt ttgcatattt ttgcacccat tcctttactt gaaaaaatca
      661 ctcttgtaga tactccaggt ttaaatgcaa atgaaaatga tactttaaca actcttgatg
      721 aacttaaaaa tattcatggg gcgatttggt taagtttaat tgataatgca ggtaaaaaaa
      781 gtgaagaaga tgccataaaa gcaaatttag aacttttagg agaaaatagc atttgtgtat
      841 taaatcaaaa agataaatta agcgcagaag agctagataa tgttttaaat tatgcaaaaa
      901 gtgtgttttt aaaatatttt aatgagctta ttgctatttc ttgcaaagaa gctaaagatg
      961 agcaaagcta tgaaaaatct aattttcaat ctttgcttga ttttttaact cagctagata
     1021 caacagtttt aaaagaaaaa tttgttaaaa gaaaaatttt aaatttatgc gaaattttag
     1081 aagatgaaaa ccaacttttt gtaggtattt ttgatcgttt attaaatcaa tttcaaagtt
     1141 atgaaaagca tttactttta gcgtatgaaa attttttaaa agagattgaa attttaaatc
     1201 atcagatttt agaacagctt aaaagcatta gcgaaagaat ttctagtgaa atttttgcaa
     1261 gtgttaagga aaaagatgct tatttttaca aagaaagcaa aggattttta aagaaagatt
     1321 tatacacaag atatgattat aaagcgcctt atatttcaag cgacgatgct tttttggcga
     1381 tgttttataa tagtgatgtg atgagtaaag agtttaaaaa aatcaaaaat gaactttata
     1441 aatcttttga agaaatcaag atgaaattaa aagattttat aaacatactt gaaagagaaa
     1501 ttttgctttt taaagcagaa ttttcaaaca tacaaaaaga tcacattttc caaagtgata
     1561 aaaattttag tgaattaaga gctttttgca atgcaagtga tgagtacttt ttgaaagatt
     1621 ttaaggagct tttatttaaa agtattttag agcttgattt attttttgaa aaattaaatc
     1681 ttaaggcttt tacaaattat gaaaatgcta cgaaactaag ccttgcattt tttagtcgta
     1741 aaatcaatga aagtcgtgtt ctttatgagc ttgatagttc tgaatttgta cttttttatc
     1801 ctaaaaaaag tgaaatttat gaaagagttt taaatgaatt aaatgtttat gagtttgaaa
     1861 ctttgcttat taataagcct attttgacaa aaattgcaaa aaatttttta gaacaaagtc
     1921 aaaatttaat ccaagaaaaa aataaatttt tagatcttaa aaaagcagag cttcaaaaaa
     1981 gaagagcaca gattttaaat gttagagaaa gtataaagga agattaatga gaatattttt
     2041 aactttattt ttatttttta attcattatt tgcattaagt gaactagaag agggtttaaa
     2101 actttacgag gcaaataaat ttgataaagc ttatgaaatt tttaaaagtc tttgtgaaaa
     2161 agatatttct aaagcttgtt tttctttagc ttttatgcat gaaagtgcta ggggtgtgag
     2221 taaggattta aatcaagctt ataaatttta tgataaagct tgtaaattgg gtttagcaaa
     2281 tgcgtgttct aatatggctt tgcttttgca aaatcaaggt tatgaaaatg aagctctttt
     2341 ggcttttaat aaagcttgca ctttaggaga atcattaagt tgtaataata tagctttatt
     2401 ttatgaaaaa gaaaaagatg gacaaatggc ctcaagtttt tataaaagat cttgtgattt
     2461 aaaaaatgca agagcttgtt atcagttagg atctttatat gataaaggag agcttgttaa
     2521 agcaagtgta aaatctgctc ttgcttttta ttctaaatct tgcactttag gttttggtga
     2581 ggcttgttat ttgttaggac gctataatca actagaaaaa caagatctaa caaaggcaaa
     2641 aagatatttt ggtatggctt gtgatcaaaa acatcaagaa gcttgtgcag cttataaaga
     2701 acttaattct aaagatatag agctttatta aaagttctat tttcattact ttcaaagata
     2761 tacttaaata aaattaagaa taacacaaaa tttatcgctt tttaaagtta aatttatatt
     2821 aataggacta atatagtctt gtttaaatta ttatcaagga gaagtaatgc aagacaatat
     2881 tattgatcgc agaagctttt ttaaactagg gcttctaggt ggttctgtag tagcagctag
     2941 cactataggt ggcggtgctg ttttaaaggc agcagaactt acgcattcgc atcaagcttc
     3001 acaaggaaaa tcaaataaaa ttagaggtag aatgtttttt caaactcaaa ctgaatttga
     3061 taccttaagt gcagcctgtg aaagaattta tcctaaagat gagcaaggag aaggagctat
     3121 aggtttaggc gtgccttatt ttatcgataa tcagctagct agtgcttatg gttataatga
     3181 tagagaatat atgcaagggc ctttcatgga gggcaaagcc gaacaaggct atcaaactcc
     3241 tatgcaacgc aaagatattt ttttagaagg cgtgcatgct cttgaagaaa atgctcaaaa
     3301 gcgttataaa aaatcttttt ctttgcttaa aggtggagat caggataaaa ttttaagcga
     3361 ttttgaaaaa ggaaaaattc aaactacagg ttttaaatct tcttattttt tcacactttt
     3421 aagagatatg acagtagctg gagttttagc tgatccaatt tatggcggaa atgataataa
     3481 aaatggttgg agaatgatgc aatatccagg cgcacaaatg agctatgtgg ataaaattgc
     3541 aagtgatgaa tttttttaac attgaaccta tgggtttagc agatatggag agttaaaatg
     3601 gctgaagtat taaaaaaagt agatgtagta acagttggag caggatggac tggaggtata
     3661 gtggctgcag agcttactaa agcaggtttg aatgtactta gtttagaacg cggacatatg
     3721 caaagtactg aaaattttaa ttatatccat gatgagtgga gatatgggat taattatggt
     3781 ttgatgcaag attgctcaaa agacactgtg acttttcgcc atgatcctag tggtttagcc
     3841 ttaccttatc gtaaaatggg ttcgttttta ttgggtaata atgttggcgg tgcaggggtg
     3901 cattggaatg gttggacttt taggtttatg ccttatgact ttgaaattca aaccctaagc
     3961 aaacaaagat atggtaataa attaggtaat gattatacct tgcaagattg gggcgtgact
     4021 tataaggata tggagcctta ttatgataga tttgaaaaaa cctgtggggt atcaggtgaa
     4081 ccaaatcctt tagcggaaaa aatgggagct tttagatcca gtccttatcc acaagaacct
     4141 cttgaaaata ctaaaatgct taaacgattt gaaagtgcag caaaaagttc aaatttacac
     4201 acttatcgtt tgccagcttc aaattctaaa ggtggctata caaaccctga tggtcaagat
     4261 ttagctcctt gtcaatactg tgcgtattgt gagcgttttg gttgtgagta tggtgcaaaa
     4321 gcaagtcctt taaacacagt aattccaaag gctatgagca caggtaaata caccatacgc
     4381 acttatagta atgtaacgca aattcttaaa aaagacggaa aagtaacggg ggtaaaattt
     4441 gtcgatacta gaacgatgaa agagtatatc cagcctgctg atatagttgt acttacaagt
     4501 tatatgttta acaatgctaa gcttttaatg gtaagcaaca taggtgagca atacgatcca
     4561 aaaacaggta aaggaacttt aggtagaaat tattgttacc aaatgaacat gggcacaaca
     4621 gctttctttg atgagcaatt taacaccttt atgggttcag gtgctttagg aactacgagt
     4681 gatgatttta acggagataa ttttgatcat tctaaggaaa aattccttca tggagctatg
     4741 atttatagcg ttcagcttgg aactcgccct atacaatcag ccccacttcc agcaggagct
     4801 ccaacttggg gtgccgaatt taaaaaagca ttaaactata atttcacaag agctattacc
     4861 gtaggagggc aaggtgcttc tttgcctcat aagaataatt atttaagtct tgatccaact
     4921 tataaagatg cttttggtat gccactttta cgcttaactt ataatttcac tgatcaagat
     4981 agagctttgc ataaatttat cacagataaa acagctgagg tagcaaaaag aatgcaagga
     5041 gtaaaatcaa tcaaaaaagg tgcttatctt aaggattata gcgttgtgcc ttatcaatct
     5101 actcataaca caggtggaac aaccatgggc gcagatagag aaactagtgt ggttaatact
     5161 tatttacaac actgggatgc ggataatctt tttgttgtag gagcaggaaa tttccaacat
     5221 aatagtggat ataatccaac tgatactgtg ggagctttgg cttatcgctg tgctgaaggt
     5281 attttaaaat atcataaaag tggaaaaagc ttagcttgat aataacttga gagtttttga
     5341 aaactctcaa gattataaat ttttaatttt cttccgatat agtatataat atcaaggaag
     5401 gcaaaaatga ttaatggtat aaattcttat tcaaactaca attatacaaa aaggcaaatg
     5461 tagtctgctc ttggagggtg gtatgcaaga tgattacttt aagttctttt aatagatatt
     5521 ttggaaataa tcctctgcag acacttacta aaattagaga tgaaagtatt gaaaatgcaa
     5581 aaatttaaat tataaaaagg ataaaaaatg ttaaatattt tacatgcaaa ttcaagtcat
     5641 cgtttccata aatgtatgcc taaggaagtt catcaaatat atgatacttt aaagcttatg
     5701 gaacagcaag aaggtacaaa aaaaagtaga agccaaaaaa gaagagcaaa gtaattctac
     5761 aaatacagat aaagcagata ataaaaaaat aaatttttag acatgtccgt ttagttttaa
     5821 aacaaagctt tatttataag gaagattggc ataatttttt tatttaaatt aagaatttta
     5881 agatgcgatg ctgaatttaa tgtcgttatt ttgtgaattt tgttgataag ttctagtgac
     5941 aagattttta aagtctttat caaaatttga atttttatcg ttgttttttg aatctttatc
     6001 tgttttttct aagctatttt ctgaattttt gtcatctttt tctttatttt cttcttcttt
     6061 ttctttggct tcttcggctt taagtttcat tgcttcagct cttgcttcaa attccatttt
     6121 tgtagcattt gctgcaactt tatagtcttg tgggctagga tcagcaggag ccatagctgc
     6181 tgctgcgatt tgtcttgcat tggctatagt ttcttctggt gtgtttcctt tttgcatgct
     6241 gataggaact tcgcccgctg tagcatacat ttgattatca gggcctcttg tgtaagtaaa
     6301 acttgcagca cctgctaagc cgccacccgc tgcttgatgt gcagcttcat gagcctttac
     6361 atttctatcg atactttgga gttcgcgaac ttgagctact tctttttggc ttagctctac
     6421 gccattaacc atttgggttt gttcgccatt tttttcttta tcatctttat tttcactaag
     6481 atttttttca tctttttgag tggaatcaga ttgatttgtt ttatcaaaag aaggtttgct
     6541 agagtagtaa tcataagagt tataacttga actaatttgc atttatcctt ctttttgttt
     6601 tttaaatttt taggaatttt aacgcatttt gacttaaaaa tttgataaat tttgtaaaat
     6661 aatcataaat acaatttcaa aggaatgtaa tgatttatga aaatgatttg atttatatag
     6721 agaaagagga ggctcaagtg ccttggctta aaattttt
//
LOCUS       DAPIWJ010000083         6457 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.085, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000083 DAPIWJ010000000
VERSION     DAPIWJ010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6457)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6457)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6457
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.085"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            92..754
                     /gene="sodB"
                     /locus_tag="RJ259_001419"
     CDS             92..754
                     /gene="sodB"
                     /locus_tag="RJ259_001419"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HDV7367106.1"
                     /translation="MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKD
                     TEFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAA
                     LEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
                     LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHP
                     VK"
     gene            823..1513
                     /locus_tag="RJ259_001420"
                     /pseudo
     CDS             823..1513
                     /locus_tag="RJ259_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881173.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
     gene            complement(1526..2731)
                     /locus_tag="RJ259_001421"
     CDS             complement(1526..2731)
                     /locus_tag="RJ259_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HDV7367107.1"
                     /translation="MKNLLIIGAGGVSRVATVKCAMNSDTFSKITLASRTKSKCDEIA
                     AFIKERLGVQIETAQIDADDSNAVVELIKKTEAQILLNVALPYQDLSLMDACIKAGID
                     YIDTANYEHPDLAKFEYKEQWARNDEFKQAGILGLLGSGFDPGVTNVFCAYAQQNLFD
                     EISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGRYWENGKWIETQPMEIKMEWDY
                     PEVGVKDSYLLYHEELESLVKNIKGLKRIRFFMTFGQSYLTHMKCLENVGMLGIKPVI
                     HQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGKKDGKDKQVYIYNVCNHEEC
                     YKETGAQAVSYTTGVPAMIGTKLIAKGIWQGKGVFNMEEFDAKPFMEELNSQGLPWKI
                     IEMTPSLGE"
     gene            complement(2773..3681)
                     /locus_tag="RJ259_001422"
     CDS             complement(2773..3681)
                     /locus_tag="RJ259_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDV7367108.1"
                     /translation="MMLEIKNLSKNFGKIQALENINLHVKEGEFLSILGGSGSGKSTL
                     LRIIAKLEQASSYDLFSCKGEVALMFQNYALFPHLNVEKNILFALYDKKDKNQILNHL
                     LKTFEIEDLRYKKIDEISGGQAQRVAFARAMARGCKLLLLDEPFSNLDQNLKQDLRRE
                     LKKMIENQGITAIMVTHDIEDAYCMSDQIAFLEKGKILAHANPKELYFKPDFKSAQIL
                     PDLNIIEEKLDLEDEFFAWIASKNYIFGYAELKIGNRFEAKILQKEFLGAFCRLKLLY
                     KNIIFFILVSSSYDLEEKISFDIINF"
     gene            complement(3665..5281)
                     /locus_tag="RJ259_001423"
     CDS             complement(3665..5281)
                     /locus_tag="RJ259_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDV7367109.1"
                     /translation="MYKTLKYYKLGAILLALFLALPIFGIFAELFYILFQNFNTSDLT
                     QFSSIKENLSHFFDYLFLKFIKDTFIISMGVLCLSLILGVSSAYLIANYDFYFCKILE
                     KLLILPLAIPAYILAFVYVGIMDFQGFFHENFGFRIDFFNHYGVIFVLAISLYPYIYL
                     FAKTAFKSEAKEAYEVAKIMKYSEFRIFTRVALLSARPAIFSGALLVLMETLSDYGAS
                     AYLGVDTFSAGIFKLWYDLNDSYSSSVLSGILMLFVFLIMYVDYYYKNKHHYSFNQNL
                     ALFIKKRKLNPIKQILSCIYCFMIAFVGFILPFIWLVYWGLKDHKLFESQFYIISFQT
                     IILALITALITTFLAYFLMFSSRIVKNHFFNLFILKISSLGYSIPAAALGISIIVLFV
                     FLDKFFHMSLLGNSLLVLVFAYIIRFLASAIYSLEGGYNKIHLNIDEASLNLRTSYFI
                     LFFKIHTPLMKHFLFLAFIIVFIDTIKELPLSRILAPFGFETLSVKAFWFASDERIYD
                     AALPSLFIVFLSLMVVVWMDKITRKDDVRN"
     gene            complement(5281..6285)
                     /locus_tag="RJ259_001424"
     CDS             complement(5281..6285)
                     /locus_tag="RJ259_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HDV7367110.1"
                     /translation="MKKIFFMFLTAVSFLGASELNIYSARHYNADFEIIKKFEEKTGI
                     KVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIP
                     AHLRDKDKEWFAITKRARIIAYNKNTNIDISKMKNYEDLAKAEFKGEIVMRSATAPYS
                     KTLLASIIANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIG
                     LLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSP
                     EIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEVGFR
                     "
     gene            complement(6282..6413)
                     /locus_tag="RJ259_001425"
     CDS             complement(6282..6413)
                     /locus_tag="RJ259_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDV7367111.1"
                     /translation="MSMKKIILFLLCVGFAFACSEHSHTDFKDLNKTEYNSQLKDKI"
BASE COUNT         2345 a         1067 c          851 g         2194 t
ORIGIN      
        1 ttttacccac taagctttta agatattttt actcttttta atattattat ggtaatattt
       61 tcaatatcaa actaaaaata aaggagaaat tatgtttgaa ttaagaaaat taccttatga
      121 taccaatgct tttggtgatt ttttgagtgc tgaaactttt agctatcatc atggaaaaca
      181 tcacaatact tatgttacaa atctaaataa tcttattaaa gatactgaat ttgcaggtaa
      241 agatcttgta agtattatca aaacttcaaa tgggggcgta tttaataacg cagctcaagt
      301 ttataatcat gatttttatt ttgattgcat taagccaagt acaggctgtg gctgtggcgg
      361 ttcatgtcaa agtatagatg ctaatttaca agcggcacta gaaaaagaat ttggatcttt
      421 agaaaatttc aaagctgaat ttatcaaagg cgctacagga gtttttggtt caggatggtt
      481 ttggttagtt tataatacta aaaatcaaaa actagaattt gtaggtactt caaacgcagc
      541 tacaccaatt actgaagata aagttccttt acttgttgta gatgtttggg aacatgctta
      601 ttatgtagat catcgcaatg cacgccctgc ttatttagaa aaattctatg ctcatattaa
      661 ctgggaattt gttgcaaaag cttacgaatg ggctttaaaa gaaggcatgg gatcagttag
      721 cttttatgca aatgaacttc accctgtaaa ataactttaa tcctttttgt gctagaatgg
      781 attttgacat taagtcaaca ttctacacaa aaaggggcaa aaatggataa ttctttatct
      841 gcatatactc aaaaatatga caaagaaggt tatggacttc aatatcctga tggtcatgtt
      901 ataagatttt acgagagaat cttaaaatac aaactaagca aaacaagtgg aaaattactt
      961 gattttggtt gtggaaatgg agtgcattct aagtatttta aaaatataac cggggggggg
     1021 tatagagcct tatggcattg atatagttcc tagtttaaaa aaagtttggg aaaaagatcc
     1081 ttgcttagat tctaaaaatt ttcacatcat atctcctaat tctagcttta aaaaactctt
     1141 caatacaaaa atggatttta tatttgcaaa tcaaagctta tattatctta caaaacaagc
     1201 ttttaaagaa gctgtgcaag aattttatga actatgcaat gaaggagcta ttatatttgc
     1261 aaccatgatg agcgataaag gctatagtat gtatgaaaga ggagaactta tggataatag
     1321 cttgcgtgaa gtaaaaggat gtccaagtgg tagattgagt ggttcttcat atatacgctt
     1381 tactaaagac atagaagaat taaaagaaga ttttaaacct tttaaacctt tattttgggg
     1441 agattatgaa ttaattaatc tgtataattt tgaaggcagt gtggagcact ttatttatat
     1501 aggacaaaag taagtgctct agcacttact ctcctaagct tggagtcatt tcgataatct
     1561 tccaaggaag tccttgagaa ttcagctctt ccataaaagg cttagcgtca aattcttcca
     1621 tattaaacac gccttttcct tgccaaattc ctttagcgat taatttcgta cctatcatag
     1681 caggaacacc tgtagtatag ctcacagctt gcgcgccagt ttctttgtaa cattcttcat
     1741 gattgcaaac attataaata taaacttgtt tgtcttttcc atctttttta ccacgaatca
     1801 cgcaacctat attggtataa cctttagtgc gtggtcctaa acttgcagga tcaggaagca
     1861 aggtttttaa aaattctata ggaatgattt ctttaccttg gtgtatcaca ggtttaatcc
     1921 ctagcattcc aacattttca agacatttca tgtgagttaa ataactttgt ccaaaagtca
     1981 taaaaaagcg tattcttttt aaacctttga tattttttac caagctttca agttcttcat
     2041 gataaagcaa atagctatct ttcactccta cttctggata atcccactcc atttttattt
     2101 ccataggctg cgtttctatc cacttgccat tttcccaata acgcccttta gcagaaacct
     2161 cacgcagatt gatttcaggg ttaaaattcg tcgcaaaagc atagccatga tcacctgcat
     2221 tgcaatctaa aatatctata taagaaattt catcaaataa attttgctgt gcataagcac
     2281 aaaaaacatt agttacacca ggatcaaatc cacttcctaa aagtcctaaa attcctgctt
     2341 gtttaaactc atcatttctc gcccattgct ctttgtattc aaatttagct aaatcaggat
     2401 gttcataatt tgccgtatct atataatcaa tccctgcttt tatacaagca tccattaaac
     2461 tcaaatcttg ataaggcaaa gccacattga gtaaaatttg tgcttctgtt ttcttgataa
     2521 gttctacaac tgcattgcta tcatcagcat caatttgcgc cgtttcaatt tgaaccccta
     2581 aacgctcttt gataaaagca gcgatttcat cacatttgct ttttgttcta ctagctaaag
     2641 tgattttact aaaagtatca gaattcattg cgcattttac agtagccaca cgacttaccc
     2701 cacctgcgcc tatgattaaa agatttttca ttcctatcct tcaaaaattt ttttgatttt
     2761 atcaaattta aactaaaaat tgataatatc aaaacttatt ttctcttcta aatcataact
     2821 tgagctcacc aaaataaaaa aaattatatt tttataaagt aattttagcc tacaaaaagc
     2881 ccctaaaaat tctttttgta aaattttagc ctcaaagcga tttcctattt taagctctgc
     2941 ataaccaaaa atataatttt ttgaagctat ccaagcaaaa aattcatctt ctaaatcaag
     3001 tttttcttct atgatattta aatcaggtaa aatttgtgca cttttaaaat caggtttaaa
     3061 ataaagctct ttaggatttg catgagctaa aatttttcct ttttctaaaa aagcgatttg
     3121 atcagacata caataagcat cttcaatatc atgagttacc ataatagccg taatgccttg
     3181 attttctatc atttttttca attctcttct taaatcctgt tttaaatttt gatccaaatt
     3241 agaaaaaggt tcatctaaaa gcaaaagctt acatcctctt gccatagctc tagcaaaagc
     3301 cactctttgc gcttgtcctc ctgaaatttc atcgattttt ttatatctta aatcttcaat
     3361 ttcaaaagtt ttaagcaaat gatttaaaat ttgattttta tcttttttat cataaagtgc
     3421 aaaaagtatg tttttctcaa catttaaatg aggaaataaa gcataatttt gaaacatcaa
     3481 agccacttca cctttgcaag aaaacaaatc ataagaacta gcttgttcaa gcttagcaat
     3541 aatccttaaa agcgtgcttt ttccgcttcc actacctcct aaaatgctta aaaattctcc
     3601 ttctttgaca tgaagattga tattttctaa agcttgtatt tttccaaaat ttttagataa
     3661 atttttaatt tctaacatca tctttccttg tgattttatc catccaaaca acaaccatta
     3721 aagaaagaaa aacgataaac aaggaaggca aagctgcatc ataaattctt tcatcacttg
     3781 caaaccagaa agctttaaca cttaaagttt caaagccaaa aggcgctaaa attctactta
     3841 aaggaagttc tttaatcgta tcaataaaaa caataataaa agccaaaaat aaaaaatgtt
     3901 tcattaaagg tgtgtgaatt ttaaaaaata aaataaaata actcgttctt aaatttaaac
     3961 ttgcttcatc aatatttaga tgaattttat tatatcctcc ctctaaagaa taaattgcac
     4021 tcgctaaaaa acgaattata taagcaaaaa caagaacaag taaagaattt cccaataaac
     4081 tcatgtgaaa aaatttatcc aaaaatacaa aaagcactat aatgctaatc cctaaagcag
     4141 cagcaggtat agaataaccc aaagaactta tttttaaaat aaataaatta aaaaaatgat
     4201 ttttaactat cctagagcta aacatcaaaa aataagctaa aaaagtggta attaaagcag
     4261 tgattaaagc taagattata gtttgaaaac tgataatata aaattgcgat tcaaaaagct
     4321 tatgatcttt tagcccccaa taaactagcc aaataaaagg taaaataaaa cctacaaaag
     4381 caatcataaa acaataaata caggatagaa tttgtttaat aggatttaat tttctttttt
     4441 tgataaaaag agctaaattt tgattaaaac tataatgatg tttattttta taataataat
     4501 ccacatacat aatcaaaaat acaaaaagca ttaaaatacc cgataaaaca ctagaagaat
     4561 aagaatcatt caaatcatac cagagtttaa aaattccagc cgaaaaagta tccactccca
     4621 aataagcact tgcaccataa tcactcaaag tttccattaa aaccaataaa gctccagaaa
     4681 aaatggcagg tcttgcactc aaaagtgcca cgcgtgtaaa aattctaaat tcagaatatt
     4741 tcatgatttt agctacttca taagcctctt tagcttcact tttaaaagct gttttagcaa
     4801 ataaataaat ataaggatat aaagaaatag ccaaaacaaa aataacacca taatgattga
     4861 aaaaatctat cctaaagcca aaattttcgt gaaaaaatcc ttgaaaatcc ataattccca
     4921 cataaacaaa ggctaaaata taagcaggta tggctaaggg taaaatgagt aatttttcta
     4981 aaattttaca gaaataaaaa tcataatttg caatcaaata agcagaactc acacccaaaa
     5041 tcaagcttaa acacaatact cccatgctaa ttataaaagt atctttgatg aattttaaaa
     5101 ataaataatc aaaaaaatga ctcaaatttt ctttaataga tgaaaattgg gttaaatcac
     5161 ttgtattaaa attttgaaat aaaatataaa aaagttcagc aaaaatacca aaaataggta
     5221 aagcaagaaa aagggcaagt aaaattgccc cgagtttata gtattttaag gttttataca
     5281 ttatctaaaa ccgacttcat cgtaaatttt aaccgcttct ttaatatttt ctgctatctt
     5341 actcacaggg atttgatctt ctttgaaagt tccaaaatct tttaccgttt ggcttaattc
     5401 tacatcattt cttataggaa attcataatt actatcagta agaatttttt gaatttcagg
     5461 acttaacata aattccataa attttttagc cgcatcttga tttttacttg attttgtcat
     5521 agcaataccg ctaatgttaa tatgcgttcc tctattgtct tgattaggaa aaataatacc
     5581 caaagaattc cccacttcta catcttttgg atttttagaa ttctttaaaa gccctatata
     5641 ataagtattc ataactgcaa atttagcttc gcctgcaaat acttgtctgg cttgatctct
     5701 atccccaccc tttggatttg tcgcaagatt ttcaagcaca cctttagccc atgctttagc
     5761 ctctttattt ccgtcattag ctataataga tgctaaaaga gttttgctat aaggagctgt
     5821 agcacttctc ataacaattt ctcctttaaa ttcagctttt gctaaatctt cataattttt
     5881 cattttgcta atatcgatat ttgtgttttt gttgtaagca ataattcttg ctctttttgt
     5941 aatcgcaaac cattctttat ccttatctct taaatgagcg ggtataaatt cttctaaata
     6001 ttttgatgaa acaggggata aaagtcctaa attcttagct tctgtaagat ttgaaatatc
     6061 agctgtgatg aaaatatcag caggagaatt acttccttca agagaaagtc ttttaataag
     6121 ttctgaagct ttagcttgag tatgattgac cttaatacct gttttttctt cgaatttttt
     6181 tatgatttca aaatcagcat tataatgtct tgctgagtaa atattaagct cactagcacc
     6241 taaaaatgaa acagctgtta aaaacataaa gaagattttt ttcatatttt atcctttaat
     6301 tgagaattat actcggtttt attaagatct ttaaaatcgg tatgagaatg ttcagagcaa
     6361 gcaaaagcaa agccaacgca tagtaaaaat aaaattattt ttttcataga cattaattcc
     6421 ttttagatat tttgataaga aatattaata ttaaaaa
//
LOCUS       DAPIWJ010000084         6226 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.086, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000084 DAPIWJ010000000
VERSION     DAPIWJ010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6226)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6226)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6226
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.086"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            71..979
                     /locus_tag="RJ259_001426"
     CDS             71..979
                     /locus_tag="RJ259_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HDV7367112.1"
                     /translation="MGILKGTLPALLTPYKDDGSINEKEFIRYCEFGISKGLNGLFCN
                     GSAGDSQALSVEEQVKLMKLTKKATKNNIPIITGITSTIYENTFILAQKAYELGLDAL
                     LLAMPYYYKLSEDALFEYVKYLASEVKLPLYVYNIPLFAPALSLKFIEKVSKLDNVVG
                     IKDSSGDALLLNHILDVVPSNFDVFVGREEFYVGALLAGVKGSMTSIGGVFPELMSEI
                     YKSINEKNIGRALLIQKSLLKAIRFGMSIAFPMGFALLLKARGFEFVNASIHPLSPAT
                     KEELNTRFDEAKELIKTIEKETGIKL"
     gene            976..1239
                     /locus_tag="RJ259_001427"
     CDS             976..1239
                     /locus_tag="RJ259_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002901625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HDV7367113.1"
                     /translation="MKGYIIVNEKDNVATALRDFKKGEKVANIELLNDIASGHKFALK
                     DIKKDEIIIKYAEAIASASCDISTGEWVHIHNTAGIRGRGDKE"
     gene            1242..2408
                     /locus_tag="RJ259_001428"
     CDS             1242..2408
                     /locus_tag="RJ259_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HDV7367114.1"
                     /translation="MKKIMGYRREDGKFGLRNKVIIIPSVHCANKVCENIARKCNGAV
                     YINHQHGCSQLEFDALQTRDVLIGHGSNANVFGVLIIGLGCEVIQAKAVAEKIKEATP
                     YKKVEYLVIQECGGSKNTIENGIKIVNEMLESAAKLQKSEGDFSDLILGTECGGSDSY
                     SGLSANPALGSLSDFVIDEGGAVILAETTELIGCEAILAKRAKNDEIAKKVYDKILAY
                     ENLVKSFHADIRGANPSPGNMAGGLSTIEEKSLGCVYKAGTRTLMNVIDYAKPVVSKG
                     LTFMNTPGNDIEQLSAMVAGGANICVFTTGRGTPTGSAIVPTIKMSSNTFCYENMNDA
                     IDINAGSIIDGVKTKEEVRDELIELIVRISDGELVKAELNEQNDFSVWRLATTC"
     gene            2420..3705
                     /locus_tag="RJ259_001429"
                     /pseudo
     CDS             2420..3705
                     /locus_tag="RJ259_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004314306.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            3706..4494
                     /locus_tag="RJ259_001430"
     CDS             3706..4494
                     /locus_tag="RJ259_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDV7367115.1"
                     /translation="MDLKIKNKVCIITGGAKGIGYGIAKLWASEGGIPVIFSRSMPKE
                     HDKELKKLSSEYEFYEIDLKNYEQIEKLVKKVAIKHGGIYALVNNAGTNDNLHIENTS
                     TQDLIKSYENNLFHYYTMTKECLPYIKKEQGSILNIVSKTGITGQGRTSAYASAKAAQ
                     MGFTREWACAFAKDNVRVNAIAPAEVMTPLYEKWLQNFPNPKEQYEKIAKAIPLGHRF
                     TTIEEIANTAVFTLSPLASHTTGQILMPDGGYVHLDRALNWDEN"
     gene            4505..5761
                     /gene="fucP"
                     /locus_tag="RJ259_001431"
     CDS             4505..5761
                     /gene="fucP"
                     /locus_tag="RJ259_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="HDV7367116.1"
                     /translation="MTDSKNIKIAIVLVTSLFFLWGVSYGLIDVMNKNFQNHLHISQH
                     ESGFLQFAYFGAYFIIALPAGYIANRFSYKMGIIFGLALYAIGALLIIPATNLASFHL
                     FLFAFFILACGIGSLETSANPYMTKLGDEKNASFRINAAQSFNGLGQFVGPIIGGALF
                     LSITKQEEGASKEQIQAALVANMGNVQLVYIGIAVIVILILIAFVANKLPEGSAVSDD
                     YKQKDDSKPIYVFKHRHFNLGLLAQFLYIANQVAAGAFFINYVVEHNEGLKDAQGAYY
                     FSIALVAFMLGRIVSTPLMKIIKGEKILGFYSLINVLICFSLYFASGFFSIVLLIALF
                     FFMSISFPTIFAVATKNLPLNQVKLGGSLLVMSIVGGAIMPIIIGFINDHYGTGAGYL
                     AMAPLFLYVAWYGFIGSKVRKNAKDF"
     gene            5745..>6226
                     /locus_tag="RJ259_001432"
     CDS             5745..>6226
                     /locus_tag="RJ259_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDV7367117.1"
                     /translation="MQKIFDAHLHLWDLEKIPISWIKDDEKLEQNYDFFRMKQEYKEF
                     EFIGAMYVEVNSDDLEKEALFALEQKKLHNLLFCLADFKHKEELSSFREVMHTSKKGA
                     KRLFEADFEEKIEILKTFNIPFEACIKNEELGFLEKFLSKNPNLKVVLNHLGSPKINR
                     "
BASE COUNT         2086 a          746 c         1237 g         2157 t
ORIGIN      
        1 gattttttta caaatatttt gttatatttt ttgtatataa atatattttt gtatatacga
       61 aaggaaaaaa atgggaattt taaaaggaac tttaccggct ttacttactc catataaaga
      121 tgatggaagt atcaatgaaa aagaatttat tcgctattgt gaatttggta tttctaaagg
      181 cttgaacgga ttgttttgta atggaagtgc aggggattct caagctttga gtgtggaaga
      241 gcaagttaag ttaatgaaac tcaccaaaaa ggctacaaaa aataatatac ctatcatcac
      301 gggtattacc tcgacaattt atgaaaacac ttttattttg gcgcaaaaag cttatgaatt
      361 aggtcttgat gccttattac ttgctatgcc ttattattat aaattgagtg aagatgcact
      421 ttttgaatat gtaaaatatt tagcttctga agtgaaactt cccttatatg tttataatat
      481 acctcttttt gcaccagcac taagcttaaa atttatagaa aaggtttcaa agcttgataa
      541 tgttgtgggt ataaaagata gtagcggaga tgctttgctt ttaaatcata ttttagatgt
      601 agtacctagt aattttgatg tttttgtagg aagagaagaa ttttatgtag gtgcattatt
      661 agcaggtgta aaaggttcta tgactagcat aggtggagtt tttccagaac ttatgagcga
      721 aatttacaaa tcaatcaatg aaaaaaatat aggcagagct ttgctaatac aaaaaagttt
      781 attaaaggcc ataagatttg gtatgagcat agcttttcct atgggttttg ctttgctttt
      841 aaaggccaga ggatttgaat ttgtaaatgc tagtattcat cctttatcac ctgctacaaa
      901 agaagaatta aacactcgct ttgatgaagc aaaagagctt attaaaacta tagaaaaaga
      961 aacaggtata aaactatgaa aggatatatt atagtcaatg aaaaagacaa tgttgccaca
     1021 gctttgcgtg actttaaaaa aggcgaaaaa gtggcaaata ttgagctttt aaatgatatt
     1081 gcaagcggac ataaatttgc actaaaggat ataaaaaaag atgaaattat tatcaaatac
     1141 gcagaagcta tagctagtgc aagttgcgat attagtacag gggaatgggt gcatatccat
     1201 aatactgcgg gaattagagg tcgtggagat aaggaatgaa aatgaaaaag ataatgggtt
     1261 atagaaggga agatggaaaa tttggtttaa gaaataaagt cattatcata ccaagtgtac
     1321 attgtgctaa taaagtgtgt gaaaatatag ctagaaaatg taatggagca gtttatatca
     1381 accatcagca tggttgctcc cagcttgaat ttgatgcttt acaaactaga gatgttttaa
     1441 taggtcatgg gagcaatgcc aatgtttttg gtgttttaat tatagggctt ggttgtgagg
     1501 taatacaagc caaagcagta gcagaaaaaa tcaaagaagc aacgccttat aaaaaggttg
     1561 aatatttagt gatacaagaa tgtggtggta gtaaaaatac cattgaaaat ggtatcaaaa
     1621 tagtcaatga aatgcttgaa agtgctgcaa aattacaaaa aagtgaagga gatttcagtg
     1681 atttgatttt aggcacagaa tgcggtggaa gtgatagcta tagcggactt agtgctaatc
     1741 ctgctttagg aagtttgagt gattttgtaa tcgatgaggg tggtgcggta attttagcag
     1801 aaactacaga acttataggt tgtgaagcca tactagctaa gagagcaaaa aacgatgaaa
     1861 tagctaaaaa ggtatatgat aagattttag cttatgagaa tttagtcaaa tcttttcatg
     1921 ctgatattcg aggagcaaat cctagcccag gaaatatggc aggcgggctt agtactatag
     1981 aggaaaaatc tttaggctgt gtttataagg caggaactag aaccttaatg aatgtgattg
     2041 attatgctaa gcctgtagtt tctaaaggtt taacttttat gaatacacca ggcaatgata
     2101 tagaacaact tagtgctatg gttgcaggtg gagcaaatat ttgtgttttt actacaggtc
     2161 gtggcactcc aacgggttct gctatcgtgc ctactatcaa aatgagttct aatacttttt
     2221 gttatgaaaa tatgaatgat gctattgata ttaacgcagg aagcattata gatggggtaa
     2281 aaacaaaaga agaagtgcgt gatgagctta tagaattaat cgtgcgaatt tcagatggag
     2341 aattggtaaa agcagagctt aacgagcaaa atgatttttc agtttggaga cttgctacaa
     2401 cttgttaaag ggtaaagtga tgaaacatgc aaattcaata aagttagagt tagtatgtaa
     2461 aaaaatatct tggcgtattt tgcctttgat tgttttgatg ttttgtcttt ctatgcttga
     2521 taggacaaat attagctttg tgaaatctca tatagaaatt gatgcaggca tcggtgaggc
     2581 tgcttatgct ttgggtgctg gaatattttt tataggttat gccatttttg aagtgccttc
     2641 aaatttattt ttgcataaat taggagcaaa aatttggttg agccgtataa tgatcacttg
     2701 gggtcttgta actatggcaa tgatttttat acaaggagaa ataagttttt atgtattaag
     2761 atttttattg ggtttaactg aagcaggttt tagtccaggc attattttat accttagtta
     2821 ttttttccca gctatatatc gatctaaggc ttatggaatt tatcaaatgg gagttccaat
     2881 tgcttttgtt tttggttctt taattagcgg ttttatactt gattatacac caaatatata
     2941 ttttaaaaat tggcaatgga tgtttttaat agaaggaggt attaccgttt tagtaggtat
     3001 tttttgttta ttttatcttg attcacatcc aaaagatgca aaatggttag atataaaaga
     3061 aaaagatatt ttgctaaaac atattgaaat ttccaatact aaagctaagg attattctat
     3121 aaaagatatt tttaaaagta ttttggtgtg gaaatttgta tttgtttatt tttgtattca
     3181 attaagtgtt tatggagtgc ttttttattt accaagtaaa attgcccaaa tattgcaaat
     3241 aaatgtaggt tttgaagttg gacttttaaa tgccatacct tggattttgt ttttatcgcc
     3301 ttgccaatat ttacctcatt ggctgataaa aaacattctt ggaatttaca tgcgatttta
     3361 tttttactgc tagcaagttt gagcatgata gcttcaactt ttgttacaaa tttggcggca
     3421 tttttatttt ttattagctt ggctgctata ggttttatag tcattcagcc tatattttgg
     3481 aatttgccaa ctcaagtttt aaaaggaaaa ggagccgcgg ctgctattgc tcttatagga
     3541 tccttgggaa atttaggagg ttttgtagct cctactttaa aaacatatat agaaaatcat
     3601 tttggagttg agtttggact tatagtgtta gcattgatag caattttagg tgtattggta
     3661 ttaatacatt taaaaataac tttaaattta gataaaggag aataaatgga tttaaaaatt
     3721 aaaaataagg tttgtattat tacaggaggg gctaaaggta ttgggtatgg tattgctaaa
     3781 ttatgggcaa gcgaaggcgg aattcctgta attttttcaa gatctatgcc taaagagcac
     3841 gataaagaat taaaaaaatt atctagtgag tatgaatttt atgaaattga tttaaaaaat
     3901 tatgagcaaa ttgaaaagct tgtaaaaaaa gttgctatca aacatggtgg aatctatgct
     3961 cttgtaaata atgcaggtac aaatgataat ttacatattg aaaatacaag tactcaagat
     4021 ttgataaaat cttatgaaaa taatcttttt cattattata ctatgaccaa agaatgtttg
     4081 ccttacatta aaaaagaaca aggcagtatt ttaaatatag tgagtaaaac aggcatcaca
     4141 ggacaaggaa gaacttcagc ttatgcttcg gccaaagcgg ctcaaatggg ttttactaga
     4201 gaatgggctt gtgcttttgc taaggataat gttagggtaa atgctatagc tcctgctgaa
     4261 gttatgactc ctctttatga aaaatggctg caaaattttc ctaatcctaa agagcaatat
     4321 gaaaaaatcg caaaagctat acctttaggc catcgtttta ctaccataga ggaaattgca
     4381 aatacagcgg tttttacact tagtcccctt gcttcacata ctacagggca aattttaatg
     4441 ccagatggag gttatgtgca tttagataga gcattaaatt gggatgaaaa ctaaggagta
     4501 aaaaatgact gattctaaaa atataaaaat agctattgtt ttggtaactt ctcttttctt
     4561 tttatgggga gtaagctatg gacttattga tgtgatgaat aaaaattttc aaaatcatct
     4621 tcatattagc cagcatgaaa gtggcttttt acagtttgct tattttggtg cttattttat
     4681 catagcctta cccgcaggtt atatagccaa tagattttct tataaaatgg gaatcatttt
     4741 tggcttagct ctttatgcca taggagcttt gcttattata cctgctacaa atttggcttc
     4801 ttttcatttg tttttgtttg cgttttttat tttagcttgt ggtattggtt ctttagaaac
     4861 tagtgcaaat ccctacatga caaagcttgg tgatgaaaaa aatgcgagtt ttagaatcaa
     4921 tgctgcgcaa agttttaatg gtttggggca atttgtagga cctattatag gcggagcttt
     4981 atttttatct attactaaac aagaagaggg tgcgagtaaa gagcaaatcc aggctgcatt
     5041 ggtagctaat atgggaaatg tccagcttgt ttatatagga attgctgtca ttgttatttt
     5101 gattttaatt gcttttgttg caaataagct tccagaagga agtgcggtaa gtgatgatta
     5161 taagcaaaaa gatgattcta agcccatata tgtttttaaa cacagacatt ttaacttagg
     5221 gcttttagcg cagtttttgt atatagccaa tcaagttgca gcaggagctt tttttatcaa
     5281 ttatgttgta gaacataatg aaggtttaaa agatgcgcaa ggtgcttatt atttttctat
     5341 agctttggtt gcatttatgc tagggcgcat tgtttctact cctttgatga agataatcaa
     5401 aggtgaaaaa attttaggat tttattctct aatcaatgtg cttatatgct ttagcttgta
     5461 ttttgctagc gggtttttta gcatagtgct tttaatagct ttatttttct ttatgtctat
     5521 ttcttttcct actatttttg cggtagcaac aaaaaattta cctttaaatc aagtaaaact
     5581 aggcggttct ttgcttgtga tgagcatagt aggtggagca attatgccta taattatagg
     5641 ttttattaat gatcattatg gtacaggcgc tgggtattta gcaatggcac ctttgttttt
     5701 atatgtggct tggtatggct ttataggctc aaaagtgaga aaaaatgcaa aagatttttg
     5761 atgctcatct acacctttgg gatttggaaa aaatacctat ttcatggata aaagacgatg
     5821 aaaaattaga gcaaaattat gattttttta ggatgaaaca agaatataaa gaatttgaat
     5881 ttataggtgc tatgtatgtt gaggttaata gtgatgattt agaaaaggaa gctttgtttg
     5941 ctttggagca aaaaaagctt cataatcttt tgttttgttt agcggatttt aagcataaag
     6001 aagagcttag ttcttttagg gaagtaatgc acacgagcaa aaaaggagct aaaagactat
     6061 ttgaagcaga ctttgaagaa aaaatagaaa ttttaaaaac tttcaatata ccttttgagg
     6121 cttgtattaa aaatgaagag cttggttttt tagaaaaatt tttaagtaaa aatccaaatt
     6181 taaaagtggt tttaaatcat ctaggaagtc caaaaataaa tcgttt
//
LOCUS       DAPIWJ010000085         6187 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.087, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000085 DAPIWJ010000000
VERSION     DAPIWJ010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6187)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6187)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6187
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.087"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            59..529
                     /locus_tag="RJ259_001433"
     CDS             59..529
                     /locus_tag="RJ259_001433"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HDV7367118.1"
                     /translation="MENEKNYRPNVAAIVLSSSYPFECKIFIARRSDMDNIWQFPQGG
                     IDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMYPYDGQIQKYFL
                     VRLKHGVTININTKHPEFDDYQFVSVKQIFEMINHFKKNIYVKVIKYFEKKGYI"
     gene            531..1733
                     /locus_tag="RJ259_001434"
     CDS             531..1733
                     /locus_tag="RJ259_001434"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HDV7367119.1"
                     /translation="MLIVQKYGGTSVGTLERIEAVANRVIQSAQQGNQLVVVVSAMSG
                     VTNTLIEQAEYFSKTPNGKDMDMLLSSGERVTSALLSIALNEKGCPAISFSGRKAGII
                     TDSVFTKARIHHIDTKAIKSELQNGKIVVIAGFQGVDEEGNVTTLGRGGSDLSAVAVA
                     GALNADLCEIYTDVDGVYTTDPRIEPKAKKLDKISYEEMLELASLGAKVLQNRSVELA
                     KKLNVNLVTRSSFNNNEGTMITKEDGMEQALVSGIALDKNQARVTLRNVEDKPGIAAE
                     IFSVLANENINVDMIIQNVGVDGATNLGFTVPQNELELAKNAMQKILSSKTTIESDSA
                     VVKVSIVGVGMKSHSGVASKAFKALADEGINIGMISTSEIKISMIVHEKYGELAVRAL
                     HECYGLDK"
     gene            1734..2270
                     /locus_tag="RJ259_001435"
     CDS             1734..2270
                     /locus_tag="RJ259_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HobA family DNA replication regulator"
                     /protein_id="HDV7367120.1"
                     /translation="MSDFLSFTLENIRNGGAFMAWLESRRLEWAPLMAARLKYLLEGR
                     TFVLMCDEQRSWYEEYFLKNINSKATRPMLPFVSLNSLCKKKVQSSEDIALLNDLLDI
                     SFPNGYVYFYIGSASDNKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDIKLISLY
                     QLFDVSLDAILFSKVQLG"
     gene            2276..2875
                     /locus_tag="RJ259_001436"
     CDS             2276..2875
                     /locus_tag="RJ259_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HDV7367121.1"
                     /translation="MFISKIIISEDFLGIKEEMINNFGIKKLRFFIPQNEFLLDDARA
                     VEKESYIAETEEKIIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVIPSKNLLLPTIK
                     SRLICEKRKVEKEVKKLDLDLKRMDLRMLFDFLQKNENLDKNELMDQIALLAKECVKY
                     KDFNAEELEFFYESYELAKLNSKSGVLLATLLLNYYTKK"
     gene            2877..4019
                     /gene="folP"
                     /locus_tag="RJ259_001437"
     CDS             2877..4019
                     /gene="folP"
                     /locus_tag="RJ259_001437"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HDV7367122.1"
                     /translation="MKFFKINPNTDFNLLCSFINPHKMGQKIMSEKTKIHFIFIKDIS
                     TPAANILKQDALRVGAELITHKEVITAKITHSNALLMASKEQIQKLVVKEKLQDFGLK
                     NLALFLQKDFLKPKKAELMAVINVNEDSFNAKSRVSEEDFEKRLNDFLALKPEYIDIG
                     AVSSRPGSEYCGKEEEFKRLKKVLDLIYEKNYYEQAIFSLDSFDEYCLEYALNKGFKL
                     INDITSLRNLNLAKLASKYGAKYCLMHMQNNPNNMQDNPFYEDLLDEMTLFFKEKLEL
                     LESFGVKESILDVGIGFGKSAGHNMILIKHLEHFLQFNKPLLIGASRKSVINAYFQSE
                     IKDRLAGTLYLHLKAFENGASIIRVHDLYEHKQLFALAQAMDNIGV"
     gene            4020..5963
                     /gene="ligA"
                     /locus_tag="RJ259_001438"
     CDS             4020..5963
                     /gene="ligA"
                     /locus_tag="RJ259_001438"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HDV7367123.1"
                     /translation="MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFE
                     EQNKDEISKDSPTQKIAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAKCEKNF
                     FIEPKFDGASLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIR
                     GEVVILKDDFEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGE
                     NTLNFTKHSEVMQFIRELGFLKDDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVV
                     RVDDLALCEELGYTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVN
                     LDGVVVKSATLHNFDEIARLDVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRP
                     KLCPTCQSELLDEGTLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK
                     KITTLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVA
                     AKKLSLSFGKEWYKQSFEAYANLEGFGEQMALSLCEFTRVNRTRIDEFYKLLNLKIEK
                     LEIKSDGVIFGKTFVITGTLSRPRDEFKALIEKLGGKVSGSVSKKTDYVLFGEEAGSK
                     LSKAKELEVKCIDESAFNELVKE"
     gene            5944..>6187
                     /locus_tag="RJ259_001439"
     CDS             5944..>6187
                     /locus_tag="RJ259_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367124.1"
                     /translation="MSLLKNSSYILTLLSLFGFLLTWQRSAFSLFFLISIFLTLFWEF
                     FLFLKLRKNIIKEATLIKGSLFYRVSMGDFYLYIFSF"
BASE COUNT         2211 a          709 c         1240 g         2027 t
ORIGIN      
        1 taaaaatttg atttgattta ggttaaaatt atatccttga gatttaagga acaatattgt
       61 ggaaaacgag aaaaattata gaccaaatgt tgcagctatt gttttatcaa gttcttatcc
      121 ttttgagtgt aagattttta tagctagaag aagtgatatg gataatattt ggcaatttcc
      181 acaaggaggt attgataaag gtgaaagtgt caaaaacgct ttatttagag aactaaaaga
      241 agaaataggc actgatgagg ttgaaatcat tgccgagtat ccagaatggt tgagttatga
      301 ttttccgagt aaaattgtta aaaaaatgta tccttatgat gggcagattc aaaaatattt
      361 tttagtgcgt ttaaaacacg gtgttacaat caatattaat accaagcatc ccgaatttga
      421 tgattatcaa tttgtgagtg ttaaacaaat ttttgaaatg attaatcatt tcaaaaaaaa
      481 tatttatgtt aaagtgatca aatattttga aaagaaaggt tatatctaaa atgcttatag
      541 ttcaaaaata tggtggaaca agcgttggaa cacttgagcg tatcgaagca gtagccaata
      601 gggttatcca aagtgcgcaa cagggtaatc aacttgttgt tgtagtatct gcaatgagtg
      661 gggtgacaaa tactcttatt gagcaagctg aatattttag taaaactcct aatggtaaag
      721 atatggatat gcttttaagc agcggagagc gtgtaacaag cgctttactt tctatcgctt
      781 taaatgaaaa gggttgtcct gctatatcat tttctgggag aaaagcagga attattacag
      841 atagtgtttt tacaaaggca agaattcatc atattgatac aaaagcgata aaatcagaac
      901 ttcaaaatgg taaaatagtc gttatagcag gttttcaagg tgtagatgag gaaggtaatg
      961 taactacctt agggcgtggt ggaagcgatt taagtgctgt ggcggtagca ggtgctttaa
     1021 atgcggattt gtgtgaaatt tataccgatg ttgatggggt ttatacaaca gatccaagaa
     1081 ttgaaccaaa ggcaaagaaa ttggataaaa tttcttatga agaaatgctt gaacttgcaa
     1141 gtttgggtgc aaaagttttg caaaatcgct ctgtagagct tgcaaaaaaa ttaaatgtta
     1201 acttagtaac tagaagtagt tttaacaata acgaaggaac aatgataaca aaggaagatg
     1261 gaatggaaca agctttagta agtggtattg ctttggataa aaatcaagca agagtgactt
     1321 taagaaatgt agaagataag cctggaatcg cagctgaaat tttttctgtt ttggcaaatg
     1381 aaaatattaa tgtagatatg attatacaaa atgttggagt tgatggcgct acaaatttgg
     1441 gttttacggt tcctcaaaat gaacttgaat tagctaaaaa tgctatgcaa aaaattttaa
     1501 gctcaaaaac aactatagaa agtgatagtg ctgtagtaaa agtttctata gtcggcgtag
     1561 gcatgaaatc acattcagga gtggcaagta aagcttttaa agctttagct gatgagggga
     1621 ttaatatcgg tatgatttct actagtgaaa taaaaatttc aatgatagtt catgaaaaat
     1681 acggagaact tgcagttaga gcactacatg agtgctacgg acttgataaa taaatgagtg
     1741 attttttaag ttttactctt gaaaatattc gcaatggcgg agcttttatg gcatggttag
     1801 agtcgcgtcg tttagaatgg gctcctttga tggctgcaag acttaaatat cttttagaag
     1861 gacgcacttt tgtattaatg tgtgatgaac aaagatcttg gtatgaagag tattttttaa
     1921 aaaatataaa ttcaaaagcc actcgtccca tgctcccttt tgtgtcgtta aattctttat
     1981 gtaagaagaa agtacaaagt tcagaagata tagctttact taatgacttg cttgacattt
     2041 cttttcctaa tggttatgta tatttttata taggaagtgc ttctgataat aaatctttaa
     2101 tcgctaaatc aagagatgat agtttattgt ggctttttga tgagcagtta caagatagtt
     2161 tttatttaaa ttctaaagat aaagacttgg atatcaagct tattagttta tatcaacttt
     2221 ttgatgtaag tttggatgca atattatttt ccaaggtgca attaggataa atattttgtt
     2281 tattagtaag attattatca gtgaagattt tttaggtatt aaggaagaaa tgattaataa
     2341 ttttggtatt aaaaaattaa gattttttat accacaaaat gaatttttac ttgatgatgc
     2401 aagagcggtt gaaaaagaaa gctatatcgc agaaactgaa gaaaaaatta ttgttttaat
     2461 ggcggattct tataggatag aagcgcaaaa ttttttactt aaactccttg aagaacctcc
     2521 aaaaaatatt aaatttctta ttgtgatacc ttctaaaaat ttacttttac ctactataaa
     2581 atcacgtctt atttgtgaaa aaagaaaagt tgaaaaggaa gttaaaaaac ttgatttaga
     2641 tcttaaaaga atggatttaa gaatgctttt tgattttttg caaaaaaatg aaaatttgga
     2701 taaaaatgaa cttatggatc aaatcgcatt gcttgctaaa gaatgtgtga aatataaaga
     2761 ttttaacgct gaagaattag agttttttta tgaaagttat gagcttgcaa aattaaattc
     2821 taaaagcggg gtgcttttag ctactctttt attaaattac tatacaaaga aataaaatga
     2881 aattttttaa aatcaatcca aacaccgatt ttaatttgct ttgttctttc ataaaccctc
     2941 ataaaatggg acaaaagatc atgagtgaaa aaacaaaaat tcattttatt tttatcaaag
     3001 atatttctac tcctgcggca aatattttaa aacaagatgc tttaagagta ggagctgaac
     3061 ttattactca taaagaagta attactgcaa aaatcactca ttcaaatgcg cttttaatgg
     3121 caagtaaaga gcaaattcaa aagcttgttg tcaaagaaaa acttcaagat tttggactta
     3181 aaaatttggc tctttttttg caaaaagatt ttttaaaacc gaaaaaagcc gagcttatgg
     3241 cagtgattaa tgtcaatgaa gacagtttta atgcaaaaag tcgtgtgagt gaagaagact
     3301 ttgaaaaaag gcttaatgac tttcttgctt taaagcctga atatatcgat ataggtgcgg
     3361 taagctcaag acctgggagt gagtattgtg gcaaggaaga ggaatttaaa agactgaaaa
     3421 aagtacttga cttaatttat gagaaaaatt attacgaaca agcaattttt agtttagata
     3481 gttttgatga atattgtcta gaatatgctt taaataaggg ttttaaactc attaatgata
     3541 ttacaagttt aagaaatctt aatctagcca aacttgcaag taaatatggg gcaaaatatt
     3601 gcttaatgca catgcaaaac aatccaaata acatgcaaga taatcctttt tatgaagatt
     3661 tgcttgatga gatgactttg ttttttaaag aaaaacttga gcttttagaa agttttggag
     3721 taaaagaaag tattttagat gtaggtattg gttttggaaa gagtgcgggg cataatatga
     3781 ttttaatcaa acacttagaa cattttttgc aatttaataa acctttactt ataggtgcga
     3841 gtcgtaaaag tgtgattaat gcgtattttc aaagcgagat taaagatcgt ttagcgggaa
     3901 ctttatattt gcatttaaag gcttttgaaa atggtgctag tattataaga gtgcatgatt
     3961 tatatgagca taaacaactt tttgctttag cgcaggcaat ggataatata ggagtttaga
     4021 tgaaaaaaga agagtattta gaaaaagttg ctttagctaa tttgtggatg agggcatatt
     4081 atgaaaaaga tgaacccttg gctagcgatg aagaatacga tgctttaatc agagaattaa
     4141 gagtttttga agaacaaaat aaagatgaaa tttcaaaaga ctctccaacg caaaaaatag
     4201 ctcctactat acaaagtgag tttaaaaaaa tagctcattt aaagcgtatg tggtcgatgg
     4261 aagatgtgtt tgatgagagt gagcttagag cttgggcaaa acgcgcaaaa tgtgaaaaaa
     4321 acttttttat agagcctaaa tttgatggag cgagtttaaa tttgctttat gaaaatggta
     4381 aattagtaag cggcgccact aggggcgatg gcgaagtggg tgaggatata acgcttaatg
     4441 tttttgagat agaaaatata cctaaaaata tagcctataa agaaaggata gaaattcgtg
     4501 gagaagtggt gattttaaaa gatgattttg agaaaatcaa cgaaaaaaga gcccttttaa
     4561 atcaaagttt atttgccaat ccacgcaatg ctgcaagtgg gagtttaagg cagcttgata
     4621 caagcatcac taaagaaaga aatttgaaat tttatccttg gggagtaggg gaaaatacct
     4681 taaatttcac caaacacagc gaggtgatgc aatttatcag agagcttggt tttttaaagg
     4741 atgattttgt aagactttgc gctaatttag acgaagtttt gaaagcttat gatgagcttt
     4801 tagctctaag agaaaaaaaa cctatgatga tggatggaat ggtggtaaga gttgatgatc
     4861 ttgcactttg tgaagaatta ggctatacgg taaaatttcc aaaatttatg gcagctttta
     4921 aatttcctgc gcttgaaaaa accacgcgtt taataggggt aaatttacaa gtaggaagaa
     4981 gtggagtgat cactcctgtg gcagttttag aacctgtaaa tttagatggg gttgtagtaa
     5041 aatcagccac ccttcataat tttgatgaaa ttgcaagact tgatgttaaa atcaatgatt
     5101 ttgtaagcgt gataagaagt ggcgatgtta tccctaaaat cactaaggtt tttaaagagc
     5161 gtagagaagg tttagagatg gaaatttcac gccctaagct ttgtcctact tgccaaagtg
     5221 agcttttgga tgaaggaact ttaataaaat gtcaaaatat agattgtgaa gatagacttg
     5281 taaattctat cattcatttt gtttctaaaa aatgtcttaa tatcgacgga ctgggagaaa
     5341 atatagtaga acttttatac aagcacaaaa aaatcactac gcttgagagt atttttcatt
     5401 taaaatttaa tgattttgaa ggtttggaag gctttaaaga aaagaaaatt aacaatcttt
     5461 taaatgccat agaacaagca agagaatgtg agctttttcg ttttatcaca gctttaggaa
     5521 tagagcatat tggcgaggtt gcggctaaaa aattaagttt aagttttggt aaagagtggt
     5581 acaagcaaag ctttgaagct tatgccaatt tagaaggttt tggagagcaa atggctttaa
     5641 gtctttgcga atttacgcgt gttaatcgca caagaattga tgagttttac aagcttttaa
     5701 atttgaaaat agaaaaactt gaaatcaaaa gcgatggtgt gatttttggt aaaacttttg
     5761 tgattacagg cactctttca cgcccaagag atgagtttaa ggctttgata gaaaagcttg
     5821 ggggtaaggt aagcggctcg gtttctaaaa agactgacta tgtgcttttt ggagaagagg
     5881 caggttctaa gcttagtaag gctaaagagc ttgaagtaaa atgtatagat gaaagtgctt
     5941 ttaatgagct tgttaaagaa tagttcttat attttaacgc ttttaagcct ttttggcttt
     6001 ttgctaactt ggcaaaggag tgctttttct ttattttttt taatttctat ttttttaaca
     6061 cttttttggg aattcttttt atttttaaag cttagaaaaa atattataaa agaagctact
     6121 ttgattaagg gaagtttgtt ttatcgtgtt agtatggggg atttttatct ttatattttt
     6181 agttttt
//
LOCUS       DAPIWJ010000086         6175 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.088, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000086 DAPIWJ010000000
VERSION     DAPIWJ010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6175)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6175)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6175
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.088"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            23..472
                     /locus_tag="RJ259_001440"
     CDS             23..472
                     /locus_tag="RJ259_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HDV7367125.1"
                     /translation="MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAY
                     EEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYL
                     LAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM"
     gene            537..1574
                     /locus_tag="RJ259_001441"
     CDS             537..1574
                     /locus_tag="RJ259_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7367126.1"
                     /translation="MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIF
                     NFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINI
                     PIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKN
                     ILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYV
                     IYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNF
                     YSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFE
                     VISFDKFSLGF"
     gene            complement(1571..2302)
                     /locus_tag="RJ259_001442"
     CDS             complement(1571..2302)
                     /locus_tag="RJ259_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HDV7367127.1"
                     /translation="MKPIIIFFSLFLIPLFADDLKSGFGEEYYKLDIDQKRQIFFIKM
                     NEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAE
                     YKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHK
                     IKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKG
                     YYINLITKIIKRYNLEKYDTNSNNT"
     gene            complement(2277..3026)
                     /locus_tag="RJ259_001443"
     CDS             complement(2277..3026)
                     /locus_tag="RJ259_001443"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HDV7367128.1"
                     /translation="MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFI
                     VILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAK
                     VNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQK
                     YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPK
                     SGEEVGFAYKNEELFFEGKVKYCFEANYNFF"
     gene            complement(3023..3628)
                     /locus_tag="RJ259_001444"
     CDS             complement(3023..3628)
                     /locus_tag="RJ259_001444"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HDV7367129.1"
                     /translation="MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENA
                     LELEKIFSPFSLKNLLKKEKKIDRKILGEIVFNNKEAKKILENFTHPKIRAKILEQMQ
                     ILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLD
                     SQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGNM"
     gene            3689..4678
                     /locus_tag="RJ259_001445"
     CDS             3689..4678
                     /locus_tag="RJ259_001445"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HDV7367130.1"
                     /translation="MKISYEDAGVSIDNGNTFVEAIKPLVKETFNDNVVGGIGSFAGA
                     FRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFL
                     DYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMA
                     EEDEIDRSKFVKNGDILLALSSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDIL
                     LEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYT
                     IGQAVEESEMYRSFNMGVGLVMVVDPSNVSKILENSDAFIIGEICINEGIVLE"
     gene            complement(4699..5892)
                     /gene="dcuC"
                     /locus_tag="RJ259_001446"
                     /pseudo
     CDS             complement(4699..5892)
                     /gene="dcuC"
                     /locus_tag="RJ259_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856491.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
BASE COUNT         2132 a          912 c          956 g         2175 t
ORIGIN      
        1 aaattaaaaa aaggagtcaa tcatgtcagt tacaaaacaa ttattacaaa tgcaagcaga
       61 tgctcatcat ttatgggtta aatttcataa ttatcactgg aatgtaaaag gtttgcaatt
      121 tttttctata cacgagtaca cagaaaaagc ttatgaagaa atggcagaac tttttgatag
      181 ttgtgctgaa agagttttac aacttggcga aaaagctatc acttgccaaa aagttttaat
      241 ggaaaatgca aaaagtccaa aagttgcaaa agattgcttt actccgcttg aagtcataga
      301 actgatcaaa caagattatg aatatctttt agcagaattt aaaaaactca atgaagcagc
      361 agaaaaagaa agtgatacta caacagctgc ttttgcacaa gaaaatatcg caaaatatga
      421 aaaaagtctt tggatgatag gcgctacttt acaaggtgct tgcaaaatgt aatttaaggg
      481 gctttatgcc ccaattatac aaactaggtt ataatatcct tttttaaagg ataaaattga
      541 aagtacttaa ttttttttat gaaaaccacc ctaaatttga agtaagttat gaaagaaaaa
      601 atcaaatttc aaaaccaaat attatcataa aaggcccacg attttgtggt aaaaaaacac
      661 ttatttttaa ttttttatct caatttaaag caagtgaaat tttgttttta gatttatatg
      721 atacacgctt tgaaaaacaa agtttagaaa gacttgctga ttttctgaat gaaaatttac
      781 aaattaaaat tctttgcctt tataatttgg attttatccc taatttagaa aaaattaaca
      841 ttcccatcat cttaagtaca aatataaaag atttaaatgt aaatgggttt gaagagcttg
      901 aacttgatta ttttgatttt gaagaattta ttagtgtaag taagaaaaat ttacctataa
      961 ataatttagt aggtcttttt ttgcaaagtg gacgcagtaa atttggagaa aaaaacatac
     1021 ttctaagaca aagcttcact cttttagaat tagaaatttt aaagtattta gctttaaatt
     1081 tgggtcagca aatcagtatt tctaagatat ttatagaact caaaaaaaga ttaaaaactt
     1141 caaaagatag tgtttatcaa gctataaaaa aattagaaaa tacttatgtg atttatacct
     1201 taaaacatga tgaaaaaaaa cttcaaaaga tttattttaa agattttggc ctaagaaata
     1261 atctttgtat ttcaaaggat ttttcacatt tatttgaaaa tttagtttta agcgagttgt
     1321 ttaaatttaa agaagaattt ttttataaca aatactttaa cttttatagc caaatatcta
     1381 aaattgctta tatttcaagt ccaactttag atattgattt gatcaagcta cgtgctaaga
     1441 aaattttacc aaaggcttta gaacttggaa tttttcatgt gatttttatc actctttcaa
     1501 gcgaggataa tttttttgaa caaggggtta aatttgaagt catatctttt gataaatttt
     1561 cacttggatt ttaggtgttg tttgagtttg tatcgtattt ttcaaggttg tatcgtttga
     1621 tgatttttgt aataagattg atataatatc ccttgcgttc agaataagaa tctaaagttt
     1681 taatagcctc tagccctgtt atctctttgc cttcgctttc aaatttagct cttgcatcgc
     1741 gaaacttttc ataagcaaaa tgacgattta aatttaaaac ataagagtca acactatctt
     1801 gcagactatc aaaaatttta attttgtgtt ttttatctgg atgtcttaaa tcaggaatta
     1861 aacctttctc accccaagtc cattctccaa aaagattgtt tgcttctctt gcgaagcgac
     1921 tggtacctgt agcactttca actaaagctt gggctatacc catggatttt ggaatttttt
     1981 gaatacgttt tttatattct gcaaaatcat aaagattttc aatgcgatat ttgtttttta
     2041 tcgtgataag tttttcaaga tttatttggt ttgaagtcct aaagcctgtt ttgtaagcat
     2101 ctttaaaaaa ggcttcgata aaagctcttt cttgttcaat ttttttaaag ctttgatcaa
     2161 acatttcatt catttttata aaaaaaattt gtcttttttg atctatatca agtttgtaat
     2221 attcttctcc aaatccactc tttagatcat cagcaaaaag tgggattaga aaaagactaa
     2281 aaaaaattat aattggcttc aaaacaatac tttacctttc cttcaaaaaa caattcttca
     2341 tttttatatg caaaccctac ctcttcacca cttttaggag ttattttaac tttattttgt
     2401 acttttttat ttaaaaatgc cagataaaaa caagccccca ttcctgtgcc acaagctaag
     2461 gtttcatctt caactccgcg ttcataggtg cgaactttta aatgattttc atctaaaatt
     2521 tttacaaaat taacattggc attatatttt tgtctcattt tttgacaaag cattgtatca
     2581 aattcatcta aattttgaca aaaatgtact agatgtggaa ctccagtgtt gcaaagttgc
     2641 caagtttttc ctaattcttc aaaagtattt tgcacgcttt ttattttgcc taaagatact
     2701 tcaactttat cttgatttac ctttgctttt attattcctg caccggttaa aaaactcatg
     2761 ttaggattta ttttgttaat atgatgtgca aaatgtgccg cagcccttga gccattgcca
     2821 cacatagcag cccttgagcc atcgttatta taaaattccc attcaaagtc gtatttttca
     2881 tgaggcaata ttacgataaa gccatccgca cctataccct cataacgatt acaaagttct
     2941 ttagctaaag cacttctatc ttcttttcta tcagcatttg ttatgacaaa atcattccca
     3001 cttgcacaat atttataaaa tttcacatgt ttcctttaga aatttcttgt attactttaa
     3061 cacattcttg cctaaaatcg gcataagaat tagtattttt aatgataaaa tctgcttttt
     3121 taagtttttc ttcaatatct atttgagaat caagtcttgc ttttgcagct tctaagctaa
     3181 gcttatctct ttgcatgatt cttttaaggc ttaattcttt aggtgtgtaa attacaatga
     3241 ctttgcctaa attttcataa gcaccgcttt caaaaaaaag aggaatttct acaaaaaaag
     3301 ctttattttc tttatctaga atttgcattt gttctaaaat tttagctcga attttaggat
     3361 gagtgaaatt ttctaagatt tttttagctt ctttattgtt aaaaacaatt tctccaagga
     3421 tttttctatc gattttcttt tcttttttga gtaaattttt taaactaaag ggagaaaaaa
     3481 tcttttcaag ttctaaagca ttttcatcta aaattttatg agcgattttg tctgcgctaa
     3541 tgcttttaaa gcctaaagaa ttcgctattt ctataaaagt gcttttacca caagcaattg
     3601 aagcggttac aaaaaaagca tttttcatct tatgccttat taaaactttt ttcgttaaaa
     3661 taccttttta gttcttaaag gaaaataaat gaaaatttca tatgaagatg caggcgtaag
     3721 tatagataat ggaaatacct ttgtagaggc tataaaacct ttggttaaag aaacttttaa
     3781 tgataatgtt gtaggtggaa ttggttcttt tgctggtgct tttagaatgc caagtggttt
     3841 taaaaagcct gtgattttag gtgcaacaga tggggttggt accaagcttc gcttggcaat
     3901 tgatgctaaa aaatatgata ctatagggca agatttagta gcaatgtgcg tgaatgattt
     3961 gatttgtaat tttgctacgc ctttgttttt cctagattat tatgctacag ccaagctcga
     4021 agtagaagta gcaaaggctg ttgtatcagg cattgccaag ggatgtaaga tggcaaattg
     4081 tgcattaatt ggcggagaaa ctgctgaaat gcctggaatg tatgcaaaag atgattttga
     4141 tcttgcgggt tttgcagtgg gtatggctga agaagatgag attgatagaa gtaaatttgt
     4201 taaaaatggt gatattttat tggcactttc tagttcagga cttcattcaa atggttattc
     4261 tttagctaga aaagtacttt ttgaaagttt aaaattaaaa tttgatgaca agatagaggg
     4321 taaaaattta attgatattt tgttagaacc tacaaggatt tatgtgcgtg attttcttac
     4381 actaaagcct tatatcagtg ctctagcaca tattacaggg ggtggtttag tagaaaattt
     4441 accacgcgtt ttacctcgtg gtatgggtgc aactatacgc aaacatcatc ttaaaactcc
     4501 tgaaattttt tatactatag gacaggctgt agaagaaagc gaaatgtata gaagctttaa
     4561 catgggagtg ggtttagtaa tggttgtaga tccttctaat gtaagtaaga ttttagaaaa
     4621 ttcagatgcc tttattatcg gcgaaatttg cattaatgaa ggtattgttt tagaatgaaa
     4681 ataaagcgtt aatacgcttt atttttgtat tttaagttct atttttgtag tgttttgttc
     4741 ttttggcaaa ggattggttt gtgctagata aaaggctaca agtacattta caagcatagc
     4801 gataagtaaa agaggagtgg ttcgttttat aatatccatt ggagctactt ttgcaaatcc
     4861 agctaaagct atgattccgc ctgctattgg tgaagctgca cgacctaaac aagatgcaat
     4921 ttctataggt aaaactagag taataggtgc aacgcctaat tttgtagcta tatcaggagc
     4981 tagttttcca aaagtattaa aagcggcaat tccacttccc ataatcactg tggcaaaata
     5041 aactaaaaag cttaaaatag ctatactcaa aagaattcca aaccatgcaa aatttcctgt
     5101 tccaagattt gaaaccgcgt tagcaaggat attaactcca ccaagtgctt taatgccttc
     5161 agcaaatact ccagcggcga tgattatgct tacgactgag ataaaaattt cagccatagc
     5221 ttttaaaatc accatcatat cttcgcctaa ttttctagca tttctgtgtc ttgcaaattc
     5281 aacaagaaaa actaaagaaa tgcttacaaa atttgctgtt acaacatcga gcttgatagt
     5341 aaaaaaatac ggtataaata aaaatacaac aggtaaccaa ggaaagagta tgtaaaaaag
     5401 tagggcattt aggatcaatg atttgcggaa tttcaacttc atcatttaaa acaccttttt
     5461 ctttatctct tttatcaatc caagtagaat aaaaaggaat caagatggca attaactaca
     5521 acataagtaa tcacactata aatttgataa tttaaagaaa gtcctacgac attatcactt
     5581 tgtcctacca tatccgccat attgattgaa tttccatctt ttggaccata atcaagcgca
     5641 attaaagaaa gcacacatac agctgtaata ggacggattt taagtgagat taaaacagga
     5701 taaatacatg ctaacaaaag caatccagca tagctagaaa tgacgatttt taaagccatt
     5761 ccaacaacaa aagttccact taaaattaag tatttatttt ttgatttttc ctgagggttt
     5821 atttgctaaa aaagcaagtt ttgccgaagc attgatatgt ttcatgtaag cagtaaagcc
     5881 tgccacactc atgataataa accctactcc agaaagctga cttttaaaaa tcgctgtgat
     5941 aaaagataac tatcaagtaa aacatttaaa aagcttgtat gctctctgct tggggctttt
     6001 ggtataggtg ttcctgtgat gtaaaaagca aaaataagca agataatatt tgaaagaaaa
     6061 atacaaaaat gagattatat tttagtatat aataagcaac gacaattacc gctaaaagtg
     6121 tagaacatat cataaaaatt ggcatgattt ctcctaaagt tattattagc tttta
//
LOCUS       DAPIWJ010000087         6002 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.089, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000087 DAPIWJ010000000
VERSION     DAPIWJ010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6002)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6002)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6002
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.089"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            107..870
                     /locus_tag="RJ259_001447"
                     /pseudo
     CDS             107..870
                     /locus_tag="RJ259_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873756.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
     gene            827..2698
                     /locus_tag="RJ259_001448"
     CDS             827..2698
                     /locus_tag="RJ259_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HDV7367131.1"
                     /translation="MNFQVKTLETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKP
                     AKTKTYERKDFDLFYADDFFVKNYNTIVQKFLIEIYPKTQSFPFTVKLRSNSNLTHLK
                     ASINLTENFKYYPNLKFDILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSI
                     KEIELEIAKGVDKIEHKSDEIIYHRDVNEECFDENINYDEGNYCKPIEKNELLFEYIY
                     RILGKEGRNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHT
                     GYCIANNLKLSQIGLKTTGSIKTNTDENINLEITNFDISDDAIKSGIVNVQASNIKVN
                     GNVGATKLYGKNISIKGLTHAKSEIFAQDIFITTHKGTLQADTVYIKNLENGTIIAKN
                     VFVENCMGGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFKNNIVVSPLVSIENNSD
                     TECENLKNLSLKIKSKLDDTISKMQNYYDYLIKNQIKIIKLQKTKNPNAIEMKFSNLY
                     HDIIKKYNHLSISYKKFIKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFLKFYPN
                     TNTNLELKHHINLKDYEKVLYLEKGQQVSYIKSSHNYSESDIEEIKIIFEKLEKDNS"
     gene            complement(2702..4339)
                     /locus_tag="RJ259_001449"
     CDS             complement(2702..4339)
                     /locus_tag="RJ259_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HDV7367132.1"
                     /translation="MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDI
                     FYTTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGN
                     AYYTRNGSFRRDANGYLVDSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNN
                     GFTVNSNNSFSIGTTASQGAIKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDP
                     SKFNITKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFK
                     SNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQE
                     GDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSIANPNGGTINIDLGS
                     PYDANKPGSGYSGIYIKEGVEKNVVTQQDGVAEGFFEQYNISDDGSIVAQFSNGKNAI
                     VGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQVVNTAKFKGGFLEQSNVD
                     LSAELSNLIVTQKAFDASSKSITTSDQMIQKAINMKR"
     gene            complement(4343..5227)
                     /locus_tag="RJ259_001450"
     CDS             complement(4343..5227)
                     /locus_tag="RJ259_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HDV7367133.1"
                     /translation="MISSSDWNLNTTATTSGTTSSGSTSGTTRTDSSSSSGIVSNPNA
                     ALDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQK
                     LSDSFSTSMSTSALGAIGKMATVSDNKIKLTGADELIALKMYLPEDSDENGVTLEIYD
                     SNNKLVFSEKSDAKSISQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANY
                     GTYPIEGVVFKDGVAYAKMAGQEVPFDAIQEITDYKLGSSSSTGGSGSSGDSSGGSSD
                     GDSSGSGSTEDGDKEEKA"
     gene            complement(5281..>6002)
                     /locus_tag="RJ259_001451"
     CDS             complement(5281..>6002)
                     /locus_tag="RJ259_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HDV7367134.1"
                     /translation="KDTQKLVSNLTQKDFNLNKEPKNNNKENKDIKQNFFDQKLNFEN
                     LNKTQVVQNKENNANFNNNTTNKETFTQEQTKTHSENVDKNSLDELNSLVKDLNKVTQ
                     NNARNITPKETLQYFSQDLKEAVDQYKAPITKLSITLNPNNLGEVEVTLIQRGNNLHI
                     NFNSNANAMNLFIQNQAEFKNSLVNMGFTGLEMNFSDQGKREQNQNQGKNRSGYGFKD
                     ALDGKNESEKVNLELVLAKYF"
BASE COUNT         2164 a          989 c          795 g         2054 t
ORIGIN      
        1 caatccattg tttttataag aattttaaaa attcatttgt caaattatta ttttattttc
       61 aaaaaatacg atataaaaat aattattaca tccaaaaagg aaaaatatgg aagttaaatg
      121 gagtagagat tttagcatta aaaatatgca attagacaaa caacacgaac taatttttga
      181 aattaccaat cttgcaaatg atttagctct aaacattcaa gataataata cacaacacaa
      241 aaatgattta aaacaaattc ttgtaaagct atttcaatac atcaaaattc attttaaaga
      301 tgaagaaaaa tttatggaaa gcattgattt tcctttgatt gaagaacata aaaaatctca
      361 tcaaatatta gtagaaaaaa ctaaagagct tttagaacac tcaaatgata ttgtaaaaat
      421 gtctcaagaa ctttccatat taaccaaaga ttggatttta gatcattttg ctaatgaaga
      481 tttatggata gctaatttta caaaaaaacc ctacaccttc aagaaatcca ttatacctta
      541 gaacaataca taaaactaaa atcaatcaaa caagacctaa gagctgaaaa aactcatgat
      601 tatatttgca attgttcttt gcgtatccat gcagttccac agactataca tcaagagctt
      661 gttagcaaag aaaatacctt aaagtgcgaa aaatgtgggc aaattttagt tcatttggat
      721 tattttgatt tgaatcaaaa tttcgaaaaa ttcaatgcta tttttgaaga tgcactacaa
      781 aatcaccatt tcacgactca aaaaaatgat atgggggggg ggatagatga attttcaagt
      841 aaaaacctta gaaactttca atccttttga aagtttaaat catgaacaag caaacacaga
      901 acaaattctt gattttagag ttatagattt taaacttctg tgttctagtg taaaaccagc
      961 aaaaacaaaa acttatgaaa gaaaggattt tgacttattt tatgcagatg atttttttgt
     1021 aaaaaactac aataccatag tgcaaaaatt tcttatagaa atttacccaa aaacccaaag
     1081 ttttcctttt acagtcaaac ttagatccaa ctccaaccta acccatctaa aagccagtat
     1141 caaccttaca gaaaatttta aatattaccc taatttaaaa tttgatattt tgcaaaatat
     1201 ctacaaaata atgatcaaac aaaaattttt aatcttaaga cttgataaaa atttatttga
     1261 taagattgat gattttatct tatcaataca aaaaagtcca tctattaaag aaatagagct
     1321 tgaaattgcc aaaggtgtag ataagattga acataaaagt gatgaaatta tttatcatag
     1381 agatgttaac gaagaatgtt ttgacgaaaa tattaactat gatgaaggaa actactgtaa
     1441 acctattgaa aaaaatgagc tactttttga atacatttat agaattcttg gaaaagaagg
     1501 acgaaattta agaggagaga tacttcattt aaatccaata gcctttcttg ataatccttt
     1561 tatcataaaa gatgaaagca tttacacaga agaattagaa gatagaatta aatattttag
     1621 tgccaattat ggatttttaa acaaagatca tacaggatat tgtatcgcaa ataatttaaa
     1681 attatcacaa atagggctta aaacaaccgg ttcaatcaaa acaaataccg atgaaaatat
     1741 aaacttagaa atcactaatt ttgatataag tgatgatgct attaaatcag gtattgtaaa
     1801 tgttcaagct tcaaatataa aagtaaatgg gaatgttgga gcaacaaaac tttatggaaa
     1861 aaatatcagt atcaaaggct taactcatgc aaaaagcgaa atttttgcac aagatatttt
     1921 tattacaaca cacaaaggaa ctttgcaagc tgacactgta tatataaaaa atttagaaaa
     1981 tgggacaatt atagctaaaa atgtatttgt tgaaaactgc atgggtggaa aaatagaagc
     2041 agaaaatatt tatatttgca atttactaac ggataatact ttatatccaa gaaaaaatct
     2101 aatcataaca aacaatataa aatttaaaaa caatatcgta gtttcaccac tagtttctat
     2161 tgaaaacaac tcagatacag aatgcgaaaa tcttaaaaat ctaagcctta aaataaaaag
     2221 taagcttgat gacaccataa gcaaaatgca aaattactat gattatctaa tcaaaaatca
     2281 aatcaaaatc atcaaacttc aaaagactaa aaatcctaac gccatagaaa tgaaattttc
     2341 aaatctttat cacgatatca taaaaaaata caatcatctt agcatttcgt ataaaaaatt
     2401 tataaaatta aaatatcaaa ttgatgcgaa attaaatttc ttaaatgaaa tggtttacaa
     2461 tgtaaaaata tacataaaag ccgaaaatat cggagaggat aattttttaa aattttatcc
     2521 taacacaaac accaaccttg aactaaaaca tcatataaat ttaaaagact atgaaaaggt
     2581 tttatatctt gaaaaaggac agcaagtaag ttatattaaa tcaagccata attatagcga
     2641 aagcgacata gaagaaatta aaattatttt tgaaaaatta gaaaaagata attcctaaga
     2701 attatctttt catattaatg gctttttgta tcatctgatc acttgtagtg atactttttg
     2761 agcttgcatc aaaggctttt tgagttacga taaggtttga aagctctgcg cttaaatcaa
     2821 catttgattg ttctaagaat ccgcctttaa atttagctgt attaacaact tgaccatctt
     2881 tcataataaa acttgcatca ccgctatttg ccgttgctgc aaaaatatta tctcccatag
     2941 caactaatcc ttgctcattg ataaaattat ataaagcaag ctttccaact atggcatttt
     3001 taccattgct aaattgcgca acaatacttc catcatcgga tatattatat tgttcaaaaa
     3061 acccttcagc tacaccatct tgttgtgtaa ctacattttt ttcgacgcct tctttaatat
     3121 aaatcccact ataacccgaa ccaggcttgt tagcatcata aggagaacct aaatcaatat
     3181 taattgttcc accatttgga tttgcaatgc ttgtaatatt gttttgaagc aaagcaccat
     3241 ttttatcaaa aaccatattt ccttcagtcg gattgcctac ggcattgcca ttagaatcat
     3301 aaatttgtgc aatagcttta tattgtatat tatcgccttc ttgcggtaaa actctttcaa
     3361 gtgtaaccct taaagtgctt ttacttccat ctgcattata aataggggat tctaaaatat
     3421 ctttattggc tttttgttgc tctgttgaaa tttgagctgt atcaagcttg atgctatttt
     3481 catccaatcc ttttaaatca agctcgttac ttttaaaatt tagattttca tctaaagtcg
     3541 cttcaaagct tgtttttacg ccattatcat cagtgaaatt taaaataatc ctatcacccg
     3601 ctttagcact aaacacatct tctttgctaa cactaccact aactacatat tttccatctt
     3661 cagtttttgt aatgttaaat ttactaggat caagatctac tttaactact tctgttgttg
     3721 tgttagtatt taaacttcca ctccatttta cattttgagt tacttgagga ggtaaataca
     3781 tattcacagg tactttaata gccccttgag aagcggttgt gcctatactg aaagaattat
     3841 ttgaatttac agtaaaacca ttatttaccg gagttcctgt gttaagataa tcccccataa
     3901 gcccagcaac tctatcgcta tagttaatac cagtaaaagc aggattcatt gttcctaaaa
     3961 caaaatttcc ataagaatct accaaatatc cattggcatc tcttctaaat gatccatttc
     4021 tagtatagta agcattgcca tcagccccta aaaccccaaa aaatcctttt ccttgcaaag
     4081 ccacatcaaa ttcgccatca cttgcaacag gagaaccctg ttcgaaaaca acttgagaag
     4141 atgctgcacc gctaccataa ccaccttgag cagggttggt tgattgggtt gttatggtag
     4201 tataaaaaat atctttaaat tgagcatcag agtatttaaa gcccgtggta ttgacatttg
     4261 ctatgttatt agcagtgata tcaataccaa agctattgct ttttactcca gaaatcccat
     4321 tataaaatga attcatcatg gcttatgcct tttcctcttt gtcgccatct tctgtagatc
     4381 cagacccaga agaatctcca tcgcttgaac caccacttga gtctccactt gaaccgcttc
     4441 ctccagtaga tgaagatgaa ccaagcttat aatctgttat ttcttgtatt gcatcaaaag
     4501 gaacttcttg tccagccatt tttgcatagg caacaccatc tttaaaaaca acaccttcga
     4561 taggataagt tccgtaattt gcagtgattt tttcaccatt tttattatta taaaccattt
     4621 taacagtgta ctcaccatca cctgcataaa ccccatcgtt atttcttcct ggccactcca
     4681 tagtaaataa accttgagaa atagatttag catcgctttt ttcactgaaa acaagtttat
     4741 tattgctatc ataaatttct agcgtaacac cgttttcatc agaatcttca ggcaaataca
     4801 ttttaagagc gataagctca tctgcacctg taagtttgat tttattatct gaaacagttg
     4861 ccattttacc aatagcccct aaagctgaag tactcatact tgtactaaaa gaatcagaaa
     4921 gcttttgcat agtttcaacc attttttgca tagttgtatt ggtattttgc tgcatttcaa
     4981 gtgcgctaag ctgcgaagtt tgagtaagca ttttatcgct atccatagga tctgttggat
     5041 cttgatgttg aagctctatc aaaagaagtt ttaaaaacgc atccttatct aaggcagcgt
     5101 ttggattgct cactattcct gagctactgc ttgaatctgt tctagttgtt ccactagtac
     5161 ttcctgaaga agtagtacct gaagttgtag cagtggtatt taaattccaa tccgatgatg
     5221 atatcattat aaactccttt ttatttagtt ttttattatt taagcaataa gtgttccaat
     5281 ttaaaaatac ttcgctaaaa caagctctag attgactttt tcactttcat tttttccatc
     5341 taaagcatct ttaaaaccat atccactacg attttttcct tgattttgat tttgctctct
     5401 tttaccttga tcactaaaat tcatttcaag tccagtaaat cccatattta caagagaatt
     5461 tttaaactcg gcttgatttt ggataaacaa attcattgca ttggcattgg agttgaaatt
     5521 gatatgaagg ttattacctc tttgtatcaa agttacctcc acttctccaa gattattagg
     5581 atttagagtg atactaagtt tagtaatagg cgctttgtat tgatccacag cctcttttaa
     5641 atcttgtgaa aaatactgca aagtttcttt aggagtgata ttgcgagcat tgttttgtgt
     5701 tactttattt aaatctttga ctaaagaatt taactcatct aagctatttt tatctacatt
     5761 ttcactgtgc gtttttgttt gctcttgagt aaaagtttct ttattagtag tattattatt
     5821 aaaatttgca ttattctctt tgttttgaac tacttgagtt ttatttaaat tttcaaaatt
     5881 taatttttga tcaaagaaat tttgttttat atctttattt tctttgttgt tgtttttagg
     5941 ctctttattt agattaaaat ctttttgtgt taaatttgaa actaatttct gagtatcttt
     6001 aa
//
LOCUS       DAPIWJ010000088         5895 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.090, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000088 DAPIWJ010000000
VERSION     DAPIWJ010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5895)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5895)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5895
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.090"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            28..1404
                     /locus_tag="RJ259_001452"
     CDS             28..1404
                     /locus_tag="RJ259_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDV7367135.1"
                     /translation="MQQEYYDLDLERAILSSCIMSEEAYASIAGDISPKDFSLKAHQD
                     IFKAVIACSNNKEPISVSFLRKHKKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQ
                     LLSFAHLLPTRINEDRAVSEIADEIGKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ
                     KTLENKGIIGLDTGFEGLNKMTKGFKGGELIIIAARPGMGKTTLCLNFIDKVLRQKKG
                     VALFSLEMPATQIMQRMLSSKTSIPLQKILTADLNDDEWERLGDACNDYSQKKLYIYD
                     SGYATIADVRAILRRLKSQDESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLA
                     RELDMPIIALSQLNRGLEQRANKRPLMSDLRESGAIEQDADAILFVYRDEVYREQEEK
                     ERENKAKAEGKAYQRLFIPNPMQENAEIIVGKNRNGPVGTIEVVFLKEKSCFVDKPIG
                     YETTEFTG"
     gene            1467..2069
                     /locus_tag="RJ259_001453"
     CDS             1467..2069
                     /locus_tag="RJ259_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367136.1"
                     /translation="MFYTFFVILKQGEKMLKQIAFGSIALTATGYGIKKLYEKLSKPE
                     RKFDTHAIVPSCKDVINTEEYKLKRELEIEQKKNQIQEFLCECMECYSGFSKYFNSKE
                     FLEFEQNFTSKNNHKTEFLLSSYKDQMIKVIDYAKKFKCLSAFLETQSEKNDLAVVKM
                     ISESMERKTQRFYLQTKFQTFPQYIFPSVWSSPMWDKQWE"
     gene            2060..2266
                     /locus_tag="RJ259_001454"
     CDS             2060..2266
                     /locus_tag="RJ259_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367137.1"
                     /translation="MGIILGILSLIAGFVAIVLMCGLYFIAFMVFVGIAILIFLSMQP
                     YPYNIIFCAIYLITILALVLWRKT"
     gene            2345..2410
                     /locus_tag="RJ259_001455"
     CDS             2345..2410
                     /locus_tag="RJ259_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001862547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3944 domain-containing protein"
                     /protein_id="HDV7367138.1"
                     /translation="MAYRYDKDLEFLKELSSPELD"
     gene            2572..3072
                     /locus_tag="RJ259_001456"
     CDS             2572..3072
                     /locus_tag="RJ259_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001964913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367139.1"
                     /translation="MSRWWSLYNEILRDVAKKFDVKFDENESTNSIETSLLCKLIEEE
                     LKNSQDENTLRELVNIFELGISNINKQTVVMGLQSLIKIGGFKSYQIAVIVANQVMKV
                     LLGRGLSLAANATLTRALSLFSGPVGWTIMTTWTALDLASPAYRVTIPAVLQIIILRL
                     KHNTKN"
     gene            3091..3589
                     /locus_tag="RJ259_001457"
                     /pseudo
     CDS             3091..3589
                     /locus_tag="RJ259_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108589.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            4094..4558
                     /locus_tag="RJ259_001458"
     CDS             4094..4558
                     /locus_tag="RJ259_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367140.1"
                     /translation="MSVSIMELLGFGELIKLPLIDSSKKYHNKNKQQLRLFIIQEILK
                     ENQKTITQIIDIINNLIEQCNTNTQNLQELIKLLKLASKNNETFKEREKLLYCPEMLS
                     LITINNHLKEDDIQFIEQYYTYNQNTHEYERNDNLSSSDLEKLSNFFKLKNL"
     gene            4883..5164
                     /locus_tag="RJ259_001459"
     CDS             4883..5164
                     /locus_tag="RJ259_001459"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367141.1"
                     /translation="MITYSNLSDVKKRIEDEFTHRNAECDKYDYLIAITCGAIAGIMD
                     IFLVGNPKDSYLGKKVDKTVEKMTQKFAQLCGWDKQKALDKNKDLTKSV"
     gene            5170..>5895
                     /locus_tag="RJ259_001460"
     CDS             5170..>5895
                     /locus_tag="RJ259_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367142.1"
                     /translation="MENKFKINYDQTTTNGRNGTNGKVDNLSMKNHHLKSIGHSPDIF
                     GLFVSIVNQFTNTSTFVSNGKIITIDTNTFELQGGNFIAKIFCGFFNWFGHLASDWCG
                     SSGGKERGAGIPMPFYNLFLLCDFGNFGQHRQTLAQIATQVFEQGYDLRHGVTMSIPV
                     MINKMLIRFMYIIKAKFYHKKEWKECIPKDDIPELNKMLLIGSGTFLLIDTGGAWIKS
                     KNPITNPVVFLSEINLINVIRFST"
BASE COUNT         2365 a          730 c          924 g         1876 t
ORIGIN      
        1 attaatttat atttataagg aaatttagtg cagcaagagt attatgactt ggatttagaa
       61 cgagctattt taagcagttg tatcatgagt gaagaagctt atgctagtat agcaggtgat
      121 attagcccaa aagattttag tcttaaagct caccaagata tttttaaagc ggttatagct
      181 tgtagtaata acaaagagcc catttctgta agttttttaa gaaaacataa aaaaatagat
      241 gagcaaattt tagcagaaat tcttgccact ccttctatga tagatttgcc tgcttatgta
      301 aatgaacttc acgaaaagtc cgtaaaaaga caactcttga gttttgcaca tcttttgcca
      361 actcgtatca atgaagatcg tgctgtaagt gaaatcgcag atgaaattgg taaagaaatt
      421 tttagcatta caaatcgtgt gaattctaga gatattaaag atgttgatat ggtaatatca
      481 gaactttttg aagaatttaa aaagcaaaaa actttagaaa ataaaggtat tatagggctt
      541 gatacaggtt ttgaaggtct aaataaaatg acaaaaggct ttaaaggggg tgaacttata
      601 ataatcgccg cgcgtccagg tatgggaaag acaactcttt gtttaaattt cattgataag
      661 gttttaagac aaaaaaaagg cgtggcttta ttttctcttg aaatgcctgc aactcaaatc
      721 atgcaaagaa tgctatcttc taaaacttct attcctttgc aaaaaatttt aactgcagat
      781 ttaaacgatg atgaatggga gcgtttagga gatgcttgca atgattatag tcaaaagaaa
      841 ttatatattt acgatagtgg ttatgcaact attgctgatg taagggctat tttaaggcgt
      901 ttaaaatctc aagatgaaag tataggactt tgtgtgattg actatatagg gcttatgatg
      961 agtaattcaa attttaatga tagacatttg caagttagtg aaatttcaag aggacttaag
     1021 cttttggcta gggagcttga tatgcctatt atcgcacttt cacaacttaa tcgtggctta
     1081 gagcaaaggg caaataagcg tcctttgatg agtgatttgc gagaaagtgg agctatagag
     1141 caagatgcgg atgctatttt gtttgtatat cgcgatgagg tttatagaga acaagaagaa
     1201 aaagaaagag agaataaagc taaagctgaa ggcaaagctt atcaaaggct ttttatacca
     1261 aatcctatgc aagaaaatgc tgaaattatt gttggaaaaa atagaaatgg acctgttgga
     1321 actatagaag ttgtattttt aaaagaaaaa tcttgttttg tagataaacc tataggctat
     1381 gaaactactg aatttacagg ctagctttaa taaaataagt ttttaatatt ttaaagttat
     1441 tttttacgac acaacctgtc gcaagggtgt tttatacttt ctttgttatt ttaaaacaag
     1501 gagagaaaat gttaaaacaa atcgcatttg gtagtatagc tcttacagct acaggatatg
     1561 gcataaaaaa attatacgaa aaattatcca agccagaaag aaaatttgat acacatgcta
     1621 ttgttccaag ctgtaaggat gtaatcaata ccgaagaata caaactcaaa agagagcttg
     1681 aaatcgaaca aaagaaaaat caaattcaag aatttctttg cgaatgcatg gagtgttata
     1741 gcggcttttc aaaatatttt aattctaagg aatttttaga atttgagcaa aattttacct
     1801 ctaaaaataa tcacaaaaca gaatttcttt tgtcgtctta taaagatcaa atgataaaag
     1861 tgatcgacta tgctaaaaaa tttaaatgct tgagtgcttt tttggaaaca caaagcgaaa
     1921 aaaatgactt agcggttgta aaaatgataa gtgaaagtat ggagagaaaa acacagagat
     1981 tttatctgca aacaaaattt caaacttttc ctcagtatat ttttccttct gtgtggagtt
     2041 ctcctatgtg ggataaacaa tgggaataat acttggaatt ttaagcctta tagctggctt
     2101 tgttgccata gtgttgatgt gtggtttgta ttttatagcg tttatggttt ttgttggcat
     2161 agcgatactt atttttcttt ctatgcaacc ttatccttat aatataatat tttgtgctat
     2221 atatttaatc acaattttag cgctagtgct atggcgtaaa acttaaaaat ttcacttccc
     2281 ccttgactgg ggggggggat ttgataaaat acaaagttaa aaattttaaa aacaaggaga
     2341 aaatatggcc tacagatatg ataaagattt agaattctta aaagaattaa gcagtccaga
     2401 actcgattag cttgtaaaaa ttttaaccca tgataaagac gggaaagttc gttttactga
     2461 agagttaacc aataatgatc tttataaaaa acattatcca gatcataaag aatatatcga
     2521 actcatttta gaagaatttc aaaaatttgg aggaaatagt attcttaata tatttcgagg
     2581 tggtggagtt tatataatga aattctacgc gatgttgcaa aaaaatttga tgtaaaattt
     2641 gatgaaaatg aaagcacaaa ctccatagaa acatcacttt tatgcaaatt aatagaagaa
     2701 gagttaaaaa attctcaaga tgaaaataca ttaagagaac ttgtaaatat tttcgaactt
     2761 ggcatttcta atattaataa acaaacagtt gtaatgggat tgcaatctct tattaaaata
     2821 ggtggattta aaagctatca aattgcagta atagttgcaa atcaagttat gaaagtttta
     2881 ctaggaagag gtttatctct tgcggcaaat gcaacactta caagagcttt aagtcttttt
     2941 tctggtccgg taggttggac aattatgacc acatggactg cattggattt agctagccca
     3001 gcctataggg ttactatacc agcagtactt caaattataa ttttaagact aaaacacaat
     3061 acaaaaaact aaacacaagg aaatgcatta atggaaaata tttgccaatt tatcatagaa
     3121 aatattgata aaaattcatt aaatacaaaa aaaaataaaa cttgttttca atatgcaaga
     3181 gcaagaaatt acaacaattt cgaagatatt taaggtatct tcggaacaca ttattgcttt
     3241 ttatgatacc tcaacatcct ttaattattt tagcaaaact accggaatat gttttactgg
     3301 caaagaagtt atctttaaaa gaaaagaaga tgaagtttta atgaaaatca actatgaaga
     3361 tttcaaagag gcaaataaat ccttacctga aaaaacaaca actcttcaag acatcaaatt
     3421 tcccatatct tttcataatc ttggaacatc ttatctttca tttgatgatt tcaaaaagaa
     3481 aaactacata gaagaaaatg atgagcttat aataaatttt ttacacatct taacttcaaa
     3541 aaataacata gaaagtttta aaaatgaaag tatgtttcca caagccttag aaaaaacaaa
     3601 cgaaagtatt aaagaaaact atataaaagt tatcattaaa ataatattag atcaatacgg
     3661 ttttttagat gaaaaaagat caatcaaaat ttttgctcta atgaataaaa ttaatgttgc
     3721 ttcagaaaca aggtataaaa tacaagattt tttacataat aaacattcta gttttgaaga
     3781 tttgctaaac atcataaaac aagaatctag atttatgcaa ttcaaatata ttttaatttc
     3841 actaataaaa gacttaattg atatagattt tgaagataat aaaatttata attttttgta
     3901 tgaaaacaaa gacattttta aaatcaaaga ccttaaagaa atctattaga taaaagaaat
     3961 cattaaaaaa gaatatcaaa taatattaga cgataataaa gaaattcagc aaatttttaa
     4021 ctttatattc gaaacagcta caaaaaataa tatatcatta aacggtttat atctttcagg
     4081 aatgacaatt ggcatgtctg tatcaattat ggagttacta ggatttgggg aattaataaa
     4141 attaccacta attgattctt caaaaaaata tcacaataaa aacaaacaac aattacgtct
     4201 ttttattatt caagaaattc tcaaagaaaa tcaaaaaaca attacccaaa ttattgatat
     4261 catcaataat ttaattgagc aatgtaatac aaatacacaa aatttacaag aattaataaa
     4321 attattaaaa ttggcttcaa aaaataatga aacttttaaa gaaagggaaa aacttttata
     4381 ttgcccagaa atgctttcat tgataacaat aaataatcat ctaaaagaag atgatattca
     4441 atttatagaa caatactata cctataatca aaatactcat gagtatgagc gcaatgacaa
     4501 tctttcttcg tcggatttag aaaaactttc aaattttttt aaattaaaaa atctataagg
     4561 ataattttat ggataaaata caagaaaaca ccaaaataga aaaggctata ttagccgaaa
     4621 aacaacaaat ctttttaata caaaataaat tatccgaaat tgaaaaaaat atcaaagaat
     4681 aatgtttaac catagaacag attcaaaata gtatcacaga aaaaaatcaa aatttgagca
     4741 atatagaata taaggaaaat taatcaatcg attcattgga aatttttttt aacacttata
     4801 gcaattggga aacatattgt caaaaaattg aaaaatattt aaacttaaaa aaataaactc
     4861 aaatgaagat tctttaaaat ttttgatcac ttattcaaat ttatcagatg ttaaaaaaag
     4921 aattgaagat gaatttaccc atagaaatgc agagtgcgat aagtatgatt atttaatagc
     4981 aataacatgt ggagcaatag ctggcattat ggacattttt ttagttggaa atcctaaaga
     5041 tagctatcta ggaaaaaagg tagataagac ggtagaaaaa atgactcaaa aatttgcaca
     5101 attatgtggt tgggataagc aaaaagcatt agacaaaaac aaagatttaa ctaaaagtgt
     5161 atagcgtttt tggaaaacaa atttaaaatt aattatgatc aaactactac aaatggaaga
     5221 aatggaacaa atggaaaagt agataattta agtatgaaaa atcatcattt aaaaagcata
     5281 ggtcactctc cagatatttt cgggttattt gtatctatag taaatcaatt taccaatact
     5341 tcaacttttg tcagcaacgg aaaaatcata accatagata caaatacttt tgaattacaa
     5401 gggggaaatt ttattgctaa aatattttgt ggatttttta attggtttgg acatttagca
     5461 tctgattggt gtggatctag tggaggcaag gaaagaggtg caggcattcc tatgcctttt
     5521 tataatttat ttttactttg tgattttgga aattttggac aacatagaca aacactagca
     5581 caaattgcaa cccaagtttt tgaacaagga tatgatctta ggcatggagt tactatgtct
     5641 attcctgtta tgattaataa aatgctaatt cgttttatgt atataataaa agctaaattt
     5701 taccacaaaa aagaatggaa agaatgtata ccaaaagatg acatacctga attaaataaa
     5761 atgcttttaa taggatctgg tactttttta ttaattgata ctggtggtgc atggataaaa
     5821 agtaaaaatc ctataacaaa tccggtagtt ttcctttctg aaatcaattt aattaatgtt
     5881 ataagattta gcact
//
LOCUS       DAPIWJ010000089         5856 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.091, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000089 DAPIWJ010000000
VERSION     DAPIWJ010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5856)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5856)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5856
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.091"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            67..2157
                     /gene="cfrA"
                     /locus_tag="RJ259_001461"
     CDS             67..2157
                     /gene="cfrA"
                     /locus_tag="RJ259_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent ferric enterobactin receptor
                     CfrA"
                     /protein_id="HDV7367143.1"
                     /translation="MKKICLSVCAIGLLSSYAISQNVELDSSIVSASGFTQDIKEAPA
                     TINVISKKELQSKPYRDVAEAIADIPGVDLYASKGKTGSYNITMRGITGYTLVLIDGR
                     RQGIGGEVGPNGFNEISNSFLPPISSIERIEVIKGPMSTLYGSEALGGVVNIITKKVS
                     DKWETSVSLDALLNENKDWGNTYGTSIYSSGPLMNDKLGLTLRFREFYRQQSNVEFTN
                     GSGQRVQGDQAQSPTKANNFNIGTRISYLANDYNTFIFDIDFSRNHYDNKQGQLGTIT
                     SPGSAPDSLTGGYADIMEVDKFVTYLSHEGVYENFSITSGLQYNRVSNNGREVVGQAN
                     QPFLGQNRDIVAEDIILDTKSVIPLGQSHILSAGGEYRLEKMQDKIANPTNFDQYLLA
                     IFAEDEYSIKDNLRLTFGARYNHHEIFGNNISPRAYLVYNPTDELTLKGGVSTGFRTP
                     YANRLINGAYNYSGQGRFPIYGNPDLKEETSLNYEIAAIYNNDLFYVSATGFLTNFKD
                     KISTQRYDKGNMIPGIGTCDADRCFKAINHGKVEYKGIELGAGISPLDNLNVNFAYTY
                     LDSEVKEAQDKSVIGKPEQDSLKHNIMLKTEYSFYNKITPWIKGEWQIDRYMGDTNIN
                     REYYKDIFFASMGVRYDINKQWSINAAIYNLFNKSFTDGWESYQNSGAPTWVNTYNRI
                     EEGRRMYISINGSF"
     gene            2460..3251
                     /locus_tag="RJ259_001462"
     CDS             2460..3251
                     /locus_tag="RJ259_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HDV7367144.1"
                     /translation="MKSRDKKDLILESIIQTYLLDNAPIGSNELNSNLCIPASTIRVY
                     LKRLSDEGLITQLHISSGRIPTILTMQNYWQSFWEKEQDKNIHIKNESFLKELSKEFE
                     IYCLVYGGRSLVLKEVLDLNTKFIVLDFEDEELVLKYEKEAWNFLQSLIGLDLSSIEK
                     IALRVHFIDLVEKIASLRQNLICYRSNEERAYQIYQNDEFVKLLDCQIHRHFKESLEF
                     EPLFKEGFMGLKVDAQFLGEDVNIILAGSVYTDYKKILQYIKEAA"
     gene            3248..3778
                     /gene="grpE"
                     /locus_tag="RJ259_001463"
     CDS             3248..3778
                     /gene="grpE"
                     /locus_tag="RJ259_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HDV7367145.1"
                     /translation="MSEQKQEFENENAENSEHLQDENLQNIEDVEQNKLQKDYDELKD
                     KYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECQDEISLKI
                     KEGVQNTLDLFLKKLEKHGVALIKDEKEFDPNLHEAMFHVDSENHQSGEVVQVLQKGY
                     KIADRVIRPTKVSVAK"
     gene            3800..5671
                     /gene="dnaK"
                     /locus_tag="RJ259_001464"
     CDS             3800..5671
                     /gene="dnaK"
                     /locus_tag="RJ259_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HDV7367146.1"
                     /translation="MSKVIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTD
                     KGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITERNGACAI
                     EIAGKIYTPQEISAKVLMKLKEDAEAFLGESVTDAVITVPAYFNDAQRKATKEAGTIA
                     GLNVLRIINEPTSAALAYGLDKKDSEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGN
                     AFLGGDDFDNKLIDFLANEFKDETGIDLKNDVMALQRLKEAAENAKKELSSANETEIN
                     LPFITADASGPKHLVKKLTRAKFEGMIDSLVAETITKINEVVSDAGLKKDEIKEIVMV
                     GGSTRVPLVQEEVKKAFNKDLNKSVNPDEVVAIGAAIQGAVIKGDVKDVLLLDVTPLS
                     LGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGN
                     FNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSGLSEEEINN
                     MVKDAELHKEEDKKRKEAVDARNAADSLAHQVEKSLSELGEKVAAADKENIQKALDDL
                     RETLKNQNASKEEIESKMKALSEVSHKLAENMYKKDEPNTANDKKKKDDDVIDAEVE"
BASE COUNT         2173 a          771 c         1145 g         1767 t
ORIGIN      
        1 tattaaatta ataattatta tcataatatt ttgatttcta aatcaatatt tgacaaaagg
       61 agaaaaatga aaaaaatatg tctatcagtt tgcgccattg gtctcttaag ctcctatgcc
      121 atatcgcaaa atgtagaact agatagctca atcgttagtg cttctggctt tacccaagat
      181 attaaagaag ctcctgctac tatcaatgtt atcagtaaaa aagaattaca aagtaagcct
      241 tatagagatg ttgcagaggc tatcgcagat atcccaggcg ttgatttata tgctagcaag
      301 ggaaaaacag gttcttataa tatcactatg aggggtatta ctggatatac tttggttttg
      361 attgatgggc gtcgtcaggg tattggcgga gaggtgggcc ctaatggttt taatgaaatt
      421 tcaaattctt tcttacctcc gatttctagt atagaaagga tagaagttat aaaaggccct
      481 atgagtactt tatatggctc tgaagcttta ggcggggtgg taaatatcat taccaaaaaa
      541 gtaagtgata aatgggaaac ttctgtaagt ttggatgctc ttttaaatga aaataaagat
      601 tggggtaata cttatggaac gagtatttat tctagtggtc ctttgatgaa tgacaaattg
      661 ggtctaacac ttcgatttag agaattttac agacagcaat ctaatgttga atttacaaat
      721 ggaagtggac aaagagttca aggagatcaa gctcaaagtc ccacaaaagc aaataatttt
      781 aatataggaa caagaattag ttatttagct aatgattata atacctttat atttgatata
      841 gatttttcaa gaaatcatta cgataacaaa cagggtcaat taggaaccat cacaagccca
      901 ggtagtgcgc cagatagctt aacgggtggt tatgcagata ttatggaagt tgataaattt
      961 gtgacttatt taagccatga gggtgtttat gaaaactttt ctatcacttc tggtttgcag
     1021 tataatagag taagcaataa tggacgcgaa gttgtaggac aagctaatca gccattttta
     1081 ggacaaaata gagatatagt cgcagaagat attatcttag atactaagtc tgtcattcct
     1141 ttgggacaaa gtcatatttt aagcgcaggt ggtgaatata ggcttgaaaa aatgcaagat
     1201 aaaatagcta atccgaccaa ttttgatcag tatttattgg caatatttgc agaggatgag
     1261 tacagcataa aagataactt aagattgact tttggagcaa gatacaatca tcatgaaatt
     1321 tttggaaata atatttcgcc aagagcttat ctggtttata atcctactga tgaacttact
     1381 ttaaaaggcg gtgtatctac gggttttagg actccttatg caaatcgttt gataaatgga
     1441 gcttataatt atagtggtca aggtagattc cctatatatg gaaatcctga tttaaaagaa
     1501 gagacatctt taaattatga aatagcagct atttacaata atgatttgtt ttatgtttct
     1561 gcgacaggtt ttttaacaaa ttttaaagat aaaatttcaa cccaaagata tgataaaggc
     1621 aatatgattc caggaattgg tacttgcgat gctgatagat gttttaaggc aatcaaccat
     1681 ggcaaggttg aatataaagg tatagagctt ggagcaggga taagccctct tgataattta
     1741 aatgtaaatt ttgcttatac ttatcttgat agtgaggtta aagaagcaca agataaaagt
     1801 gtgataggta aacctgagca ggatagttta aaacacaata tcatgttaaa aactgaatac
     1861 agcttctata ataaaattac cccttggata aaaggcgaat ggcaaataga tcgctatatg
     1921 ggtgatacta atataaatag ggaatattat aaggatatct ttttcgcttc tatgggtgtg
     1981 cgttatgata tcaataagca atggagtatc aatgcagcta tttataatct ttttaacaaa
     2041 agttttacag atggttggga atcttatcaa aatagcggtg ctcctacttg ggtcaatact
     2101 tacaatcgta tagaagaagg aagaagaatg tatatttcta tcaatggtag cttttaagct
     2161 ttaatagaaa aactaaaggg cttttaaagt cttctttagt tttttatttt aataccctat
     2221 acctttaaaa aactagacaa tcaattcaat ttaaaatttt catcttattt ttatcgttgc
     2281 attttcaatc ttaaaagata gcttatcctt ataaaaaagt aactaataaa actttagtca
     2341 tatagactaa ataaaattaa gtatattttt tatatttaca cttgacaaaa taacactcaa
     2401 tgttgtataa tatatctagc aatcaaaaaa tagagtgcta aaaatttaag gaaagagcta
     2461 tgaaaagccg agataaaaag gatttgattt tagagtctat tatccaaact tatcttttgg
     2521 ataatgcgcc tattggttct aatgagttaa attcaaacct ttgcatacct gcttcgacta
     2581 tacgcgttta tcttaaaaga cttagcgatg agggtttgat cactcagctt catataagta
     2641 gtggtagaat tcctactatt ttaacgatgc aaaattattg gcaaagtttt tgggaaaaag
     2701 aacaagataa aaatatccat atcaaaaacg aaagcttttt gaaagagtta agtaaagaat
     2761 ttgaaattta ttgtcttgtt tatggaggta gaagtttagt acttaaagaa gtactagatc
     2821 ttaatactaa atttatagtg cttgattttg aagatgaaga gctggtttta aaatacgaaa
     2881 aagaagcgtg gaatttttta caaagtctta tagggcttga tctttctagt atagaaaaaa
     2941 tagctttgag agttcatttt atagatcttg tagaaaaaat agctagctta agacaaaatt
     3001 tgatttgcta tagaagcaat gaagaaagag cttatcaaat ttatcaaaat gatgaatttg
     3061 ttaagctctt agattgtcaa attcaccgtc attttaaaga aagtcttgaa tttgaacctt
     3121 tatttaaaga aggttttatg gggcttaagg tggatgcgca gtttttgggc gaagatgtaa
     3181 atattatctt agcaggtagt gtttatacgg attataaaaa aatattacaa tatataaagg
     3241 aggcggcgtg agcgagcaaa agcaagaatt tgaaaacgaa aacgcagaaa attctgaaca
     3301 tttgcaagat gagaatttgc aaaatatcga agatgttgag caaaacaaat tgcaaaaaga
     3361 ctatgatgaa ttaaaagaca aatatatgcg tgcaaacgct gaatttgaaa atattaaaaa
     3421 aagaatggaa aaagaaaagc taagtgctat ggcttatgca aatgaaagct ttgcaaagga
     3481 tttgcttgat gttttagatg ctttagaagc agctgttaat gttgaatgcc aagatgaaat
     3541 tagcttaaaa atcaaagaag gagtgcaaaa tactttagat ttatttctta agaaacttga
     3601 aaaacatgga gtggctctta tcaaagatga aaaagagttt gatcctaatt tacacgaagc
     3661 aatgtttcat gtagatagtg aaaaccatca aagtggtgaa gtggttcaag tgcttcaaaa
     3721 aggttataaa atagccgatc gcgtgatccg cccaaccaaa gttagtgtag caaaataaat
     3781 tttaataaaa ggataaaaaa tgagtaaagt tataggtata gatttaggaa caaccaattc
     3841 ttgtgttgct gtgtatgaac gcggcgagag caaagtaatc ccaaacaaag aaggaaaaaa
     3901 cacaactcct tcagtggtag cttttacaga taaaggcgag gttttagtag gcgatagtgc
     3961 aaaacgccaa gcggtaacta accctgaaaa aaccatttat tctatcaaaa gaattatggg
     4021 tttaatgatc aatgaagatg cggctaaaga agctaaaaat agacttcctt accacatcac
     4081 cgaaagaaat ggtgcgtgcg caatagaaat cgcaggtaaa atttacaccc cacaagaaat
     4141 ttcagcaaaa gttttgatga aattaaaaga agatgcagaa gcttttttgg gtgaaagtgt
     4201 tactgatgcg gtgattactg tgcctgctta ttttaacgat gcacaaagaa aagcgacaaa
     4261 agaagcggga acgatagcag gacttaatgt attaagaatt atcaatgagc ctacttcagc
     4321 agctctagct tacggacttg ataaaaaaga tagtgaaaaa attgtggttt atgatctagg
     4381 tgggggaact tttgacgtta ctgtgcttga aacgggcgat aatgtagtag aagttttagc
     4441 aacaggtggt aacgctttct taggtggtga tgattttgat aataaactta tagattttct
     4501 agctaatgaa tttaaagatg aaacaggcat agatcttaaa aatgatgtta tggctttgca
     4561 acgcttgaaa gaagcagcag aaaatgctaa aaaagaatta agttcagcta atgaaactga
     4621 aattaattta ccatttatca cagcagatgc aagtgggcca aaacatttgg ttaaaaaact
     4681 tactagagct aaatttgaag gtatgattga ttctttagta gctgaaacca tcactaaaat
     4741 caatgaagta gtaagcgatg cagggcttaa aaaagatgag atcaaagaaa tcgttatggt
     4801 agggggctct actcgtgttc ctttagtgca agaagaagtg aaaaaagcct ttaataaaga
     4861 tcttaataag tctgtaaatc ctgatgaagt tgtggctatc ggtgcggcga ttcaaggtgc
     4921 ggttataaaa ggtgatgtaa aagatgtgct tttacttgat gttactccgc tctctttggg
     4981 tatagaaact ctaggcgggg taatgactaa gattatcgaa aaaggtacaa ctattccaac
     5041 taaaaaagag caagttttct caaccgctga agataatcaa agcgctgtaa ctatcaatgt
     5101 tttacaaggg gaaagagaat ttagtcgtga taataaatct ttaggaaatt ttaatcttga
     5161 aggaattcca ccagcaccac gcggtatgcc acaaatcgaa gttacttttg atatcgatgc
     5221 aaatggtatt ttaactgtta gtgcaaaaga taaagcaaca ggtaaggctc aagagatcaa
     5281 aatcacaggt tcaagcggac ttagcgagga agagattaat aacatggtaa aagatgctga
     5341 acttcacaaa gaagaagaca aaaaacgcaa agaagctgta gatgctagaa atgcagctga
     5401 tagcttggcg catcaagtag aaaaatcttt aagtgagttg ggtgaaaaag ttgccgctgc
     5461 tgataaagaa aatattcaaa aagctcttga tgatttgcgt gagactttga aaaatcaaaa
     5521 tgcaagcaaa gaagagattg aaagcaaaat gaaagcttta agcgaagttt ctcataagtt
     5581 agccgaaaat atgtataaaa aagatgagcc aaacacagca aatgataaaa agaaaaaaga
     5641 tgacgatgta atcgacgctg aagttgagta atcttaaaat ctctattcaa gcctttttaa
     5701 aaggcttgaa aattttttaa aattttaaag aaatgacaaa atctgtaaaa cataattctt
     5761 ttattagctt gctacctaat ttttcattga ttttttaacc aattcttttt gaagttctaa
     5821 ttcaaatcag acaattcatt ttagtgtaag caaact
//
LOCUS       DAPIWJ010000090         5608 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.092, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000090 DAPIWJ010000000
VERSION     DAPIWJ010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5608)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5608)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5608
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.092"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..1446
                     /locus_tag="RJ259_001465"
     CDS             <1..1446
                     /locus_tag="RJ259_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HDV7367147.1"
                     /translation="EIIYNNFLNTLGGRLYYDKLRFIAGRYFISKKSYSGSRIALCLN
                     GQLRPGWRDSIKALIDSFSHLGNIDVFIYSWDVESLWPGSGGNGAGWIRRFFYPMLNE
                     CPRELIMSNIDFSKKFPNVFGVISREFNKKIFIKDVLVLDNKIKKVILESYSKVVNRL
                     GELKNDSKIYYGIYQVYKAMEEYEKQNNFKYDFIVRVRPDYIIEKNDIKIEDLHLLEL
                     NDIYDARYFCGLDGSLQIGRRSAMEIYMKTWVYAKENKENPYFNTYLKHFPQTCMSPG
                     NGFLSHYVLSQWTDFLKLKVVKMNIKFSHLNHFLFDNISFPDVKNELNKDIWHIKKNK
                     IFNEVQIGKIIDFFDLIAKKYKIISKNRNNLAKIKIQNHLAYKLGQAMIDNSKSILGY
                     IKMPFVLFYIRYKHQKELQRRKTNPELVLPPLEDCSDYEEALKIKNYFSYKLGEALIQ
                     ASKNWYKGGYVKFLFFDLFALNQNKIKSKKK"
     gene            1486..1884
                     /locus_tag="RJ259_001466"
     CDS             1486..1884
                     /locus_tag="RJ259_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular biosynthesis protein"
                     /protein_id="HDV7367148.1"
                     /translation="MKTLLIDLDGTLTIDEEHVDYIDKKPNIILIKTLKEYKKQGFKI
                     NIFTSRNMRTFDGDLEKIKFHTLPTITTWLQKYDVPYDEIIIGKPWCGYDGFYVDDKA
                     IRPSEFISLNYEQIKELLKKENPHKDGGNK"
     gene            1881..3404
                     /locus_tag="RJ259_001467"
     CDS             1881..3404
                     /locus_tag="RJ259_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004313391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular biosynthesis protein"
                     /protein_id="HDV7367149.1"
                     /translation="MILITSAKYSSSDFTLEFGKIPPSFLPLGNKRLYEYQIELFKNC
                     NQKVFLSLPSDFKLSKFDEKKLKELNVEILFVPNNLSLGESVVYCLNVCCAFDEKLYI
                     LHGDTFFKELVFKENSLQVAKVKENYDWAYLDNEFHTPLKTIEDDLILAGAYGFSHPQ
                     FLIKCIVESSYSFVDGMKAYSKAYTFDIIKNDTWLDFGFITSYFHSKKAVSTQRNFNN
                     IDISNGYIKKSSSWQEKIKAEINWFDNLPKELFIYTPKVITYEDSYEIEYLCNNTLAE
                     LYVFGKLPNYVWKRIFKSLKEFLDKLHSFKSNDKDINFNCKEKTLKRLQEFSMQSGID
                     LHKNIVINSKSYPSILTLVDKLDFYMNDIDEFSLIHGDFCFSNIMYDFRAGAIKTFDP
                     RGFDFNGKITPYGDKKYDFAKLVHSVFGLYDFIIAGFFECKVNSDNIEFFIEEDVNIL
                     DIQKEFLDVFDIDDNIKALTLHLFLSMLPLHNDFKEKQMAFLSNTFMLYDTFFKESK"
     gene            3401..4123
                     /locus_tag="RJ259_001468"
     CDS             3401..4123
                     /locus_tag="RJ259_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002917465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDV7367150.1"
                     /translation="MIIIFPMAGLSSRFAKAGYDKPKYMLDLKGNSVFFHAVNSFKKY
                     FKNFKFIFVYRDIENTSNFIKEECKKLGIKSYESVRLEQETLGQAHTVRLGLERANIK
                     DDESILIFNIDTFRPNFSLPTTLDFCNIDGYLEVFEADGEQWSFVLADENDNVIKTAE
                     KERISSLCSSGLYYFKKTKDFKEIFDRMKTENDFSKGELYIAPMYNYLIKKGLIIKYH
                     IISLDEIIFCGTPDEYEILISI"
     gene            4159..>5608
                     /locus_tag="RJ259_001469"
     CDS             4159..>5608
                     /locus_tag="RJ259_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HDV7367151.1"
                     /translation="MPLMHKPNSAIERIKNHLAYKLGKVMIDFSHQRNNYKYGGGYIA
                     LFKKLYKIKKQHKKEQKIYQQTIQVFPQLKYPNLETCSDYEQALKYKFHLSYMLGEVL
                     IQTFQNLHKGSMFKLAKNIKKANKEFKIFKEIFNNFAKLSPNIIKIISKNKQAFLKEL
                     PRIQNVLKIHQDYQPILDNIFHNFNYFIQKFNLIEEWLLSNDFNEKYKKENHPYPSLL
                     DPKKLNDEKEKINYKNIPAELAWEINLPLPDNYEFVFLSAGVSGHAAMVKFLEDCNCR
                     LFSKYSHRGNNIFGAYCDQYAFLNKKGFNILTFFEYGIVDYKLKSKFIGLFNSKKRVL
                     FLVRDPIERLKSRINHIAPNKFAIYDFNLNSNVKEIVNVKKYYSKNGINDFPDINILE
                     NLLTFNFFCYKLLIDFFRKSHIFYIDMEEIKPAKAFDTMCVLADKFGFKRPVDKINFS
                     HIVFDDTIGYFPMRLHVEDMIIIITTLLRAKQM"
BASE COUNT         2156 a          566 c          864 g         2022 t
ORIGIN      
        1 gaaatcatat ataataattt cttaaatacc ttaggtggaa gactgtatta tgataaatta
       61 agatttattg caggaagata ctttatatca aaaaaatctt attcaggaag taggatagct
      121 ttatgtttaa atgggcagct aagacctggt tggcgtgata gtattaaagc gttaattgat
      181 tctttctctc atcttggcaa tattgatgtt tttatatatt cttgggatgt ggaaagtttg
      241 tggccaggtt ctggtggaaa tggtgcggga tggattagaa gattttttta ccctatgctt
      301 aatgaatgcc ctcgtgaact tataatgtct aatatcgatt tttctaaaaa atttccaaat
      361 gtttttggtg taatttcaag agaatttaat aaaaaaattt ttatcaaaga tgtactagtt
      421 ttagataata aaataaaaaa agtgattttg gaatcgtatt ctaaagttgt taatcgtttg
      481 ggagaattaa aaaatgattc taaaatatat tatggaattt accaagtgta taaggcaatg
      541 gaagaatatg aaaagcaaaa caattttaaa tatgatttta ttgtgcgtgt tagacctgat
      601 tatatcatag aaaagaatga tataaaaatt gaagacttgc atttattaga gttaaatgat
      661 atttatgatg caaggtattt ttgtggtcta gatggaagtt tgcaaatagg tagaagaagt
      721 gcaatggaaa tttatatgaa aacttgggta tatgctaaag aaaataaaga aaatccttat
      781 tttaatacat atcttaaaca tttccctcaa acttgcatga gtccaggaaa tggattttta
      841 tcgcattatg ttttaagtca atggacagat tttttaaaat taaaagtggt aaagatgaat
      901 ataaaatttt cacatctaaa tcatttttta tttgataata taagttttcc agatgtaaag
      961 aatgaattaa ataaagatat ttggcatatt aaaaaaaata agatatttaa tgaagttcag
     1021 attggtaaaa ttattgattt ttttgatttg attgctaaaa aatataaaat tatttctaaa
     1081 aatcgcaata atttggcaaa aataaaaata caaaatcact tagcatataa attaggtcaa
     1141 gctatgatag ataattcaaa aagtatattg gggtatataa aaatgccttt tgttttattc
     1201 tatatacgat ataagcatca aaaagaactt caaagaagaa aaacaaatcc agagttagtt
     1261 ttacctcctt tggaagattg ttctgattat gaagaggctt taaaaattaa gaattatttt
     1321 tcatacaaat taggtgaagc tttaatacaa gcaagtaaaa attggtataa aggtgggtat
     1381 gttaaatttt tgttttttga tttgtttgct ttgaatcaaa ataaaataaa atcaaaaaag
     1441 aaataattaa gaaatttgaa taaaaattta tgttatgctt attcaatgaa aacattactt
     1501 attgatttag atggaacttt aacaattgat gaagaacatg ttgattatat tgataaaaaa
     1561 ccaaatatta ttttaatcaa aactttaaaa gagtataaaa aacaaggctt taaaatcaat
     1621 atttttacaa gtcgtaacat gcgtacattt gatggtgatc ttgaaaaaat taaatttcat
     1681 accttaccta caattactac ttggcttcaa aaatatgatg tgccgtatga tgaaataatc
     1741 ataggtaaac cttggtgtgg gtatgatgga ttttatgttg atgataaagc cattcgtccg
     1801 tctgaattta taagtttaaa ttatgagcaa attaaagagc ttttaaaaaa agaaaaccct
     1861 cataaagatg gtggtaataa atgatactca taacttctgc aaaatattca tcttctgatt
     1921 ttactttaga atttggaaaa attcctccat cttttttacc gcttggtaat aaaagattgt
     1981 atgaatatca aatagagctt tttaaaaatt gtaatcaaaa agttttttta tctttaccca
     2041 gcgattttaa gttaagtaaa tttgatgaga aaaaattaaa agaacttaat gttgaaattt
     2101 tatttgtgcc aaataattta tctttaggtg aatctgtggt ttactgttta aatgtttgtt
     2161 gtgcttttga tgaaaaactt tatattttac acggggatac ttttttcaaa gaacttgtat
     2221 tcaaagaaaa ctctttacag gttgcaaaag ttaaggaaaa ttacgattgg gcttatttgg
     2281 ataatgaatt tcatacaccg ttaaaaacaa tagaagatga tttgatttta gcaggagctt
     2341 atggtttttc tcatcctcag tttttgataa aatgtatagt tgaaagtagt tattctttcg
     2401 tggatggtat gaaagcttat tctaaagctt atacttttga tattataaaa aatgatactt
     2461 ggcttgattt tggttttata acaagttatt tccactctaa aaaagctgta agcacgcaaa
     2521 gaaattttaa caatatagat atttcaaatg gctatataaa aaagtcttct tcttggcaag
     2581 aaaaaataaa agcagagatt aattggtttg ataatttgcc taaagaacta tttatctata
     2641 cccctaaagt tataacttat gaggatagtt atgaaataga atatctttgc aataatactt
     2701 tagcagaatt atatgttttt ggaaaattac ctaattatgt ttggaaaaga atttttaagt
     2761 ctttaaaaga atttttagat aagttgcatt cttttaaaag caatgataaa gatataaatt
     2821 ttaattgcaa ggaaaaaact ttaaaaagat tgcaagaatt tagcatgcaa agcggaattg
     2881 atttgcacaa aaatattgtt atcaattcaa aatcttatcc aagtattttg actttagtag
     2941 ataagcttga tttttatatg aacgatattg atgaattttc attaatacat ggagattttt
     3001 gtttttcaaa tattatgtat gattttagag ctggtgccat aaaaaccttt gatccaagag
     3061 ggtttgattt taatggaaaa attacccctt atggagataa aaaatatgat tttgcaaaat
     3121 tagttcattc tgtttttggg ctttatgatt ttattattgc gggatttttt gagtgtaaag
     3181 ttaatagcga taatatagag ttttttatag aagaagatgt aaatattttg gatatccaga
     3241 aagaattttt agatgtgttt gatatagatg ataatattaa agctttgact ttacatttgt
     3301 ttttatctat gttacctttg cataatgatt ttaaagaaaa acaaatggct tttttgtcaa
     3361 atacttttat gctttatgat acatttttta aggagagcaa atgattataa tctttcctat
     3421 ggcaggacta agtagtcgtt ttgcaaaggc aggctatgat aaacctaaat atatgcttga
     3481 tttaaaggga aatagtgtgt tttttcacgc tgtaaatagt tttaaaaaat attttaaaaa
     3541 ttttaaattt atttttgtgt atagagatat tgagaatact agcaatttta taaaagaaga
     3601 atgtaaaaaa ctaggaataa aatcttacga aagtgtaaga ttagaacaag aaacattagg
     3661 tcaagctcat acggtaagac ttggattaga aagggcaaat attaaagatg atgagagtat
     3721 tttaattttt aacattgata cctttaggcc aaatttttct ttacctacta ccttggattt
     3781 ttgtaacatt gatggctatt tagaggtatt tgaggcagat ggagagcaat ggagttttgt
     3841 tttagctgat gaaaatgaca atgtgattaa aactgctgag aaagaaagaa tttcaagtct
     3901 ttgtagtagt ggactttatt attttaaaaa aacaaaagat tttaaagaaa tttttgatag
     3961 aatgaaaact gaaaatgatt ttagcaaggg agaattatat atagctccta tgtataatta
     4021 tcttataaaa aaaggcttaa ttataaaata tcacataatt tcattagatg aaattatatt
     4081 ttgcggaacg cctgatgagt atgaaatatt aatttcaata taaaattaac attttaccat
     4141 tttgacttta tttaaaggat gccccttatg cataaaccaa actcagctat agaaagaata
     4201 aaaaatcatt tagcttataa attaggcaaa gttatgattg actttagtca tcaaagaaat
     4261 aattataagt atgggggggg gtatatagca ttatttaaaa aactctataa aatcaaaaaa
     4321 caacacaaaa aagaacaaaa aatttatcaa caaaccatac aagtttttcc tcaactcaaa
     4381 tatccaaatt tagaaacatg cagcgattat gagcaggctt taaaatataa atttcattta
     4441 tcttatatgc ttggtgaagt tcttatacaa acttttcaaa atttacataa aggaagcatg
     4501 tttaaactag ctaaaaatat taaaaaagcc aataaagaat ttaaaatatt taaagaaatt
     4561 tttaataatt ttgcgaaatt aagtccaaat atcattaaaa taatctctaa aaataagcaa
     4621 gcctttttaa aagaacttcc aagaatacaa aatgtattaa aaattcatca agactatcaa
     4681 cctatacttg ataatatttt ccataatttt aattatttta tacaaaaatt taatcttata
     4741 gaagaatggc tattatcaaa tgattttaat gaaaaatata aaaaagaaaa ccatccttat
     4801 ccttcattac ttgatcctaa aaaactaaat gatgaaaaag aaaaaataaa ctataaaaac
     4861 ataccagctg aacttgcttg ggaaataaat ctacctttac ctgataatta tgaatttgtg
     4921 tttttaagcg caggggtttc gggtcatgcg gctatggtaa aatttttaga agattgtaat
     4981 tgtagattat tttctaagta ctcgcatcga ggcaacaata tttttggtgc atattgtgat
     5041 cagtatgcgt ttttaaataa aaaaggtttc aatattttaa ctttttttga gtacggtatt
     5101 gtagattata aactaaagag taaatttatt ggtttgttta actcaaaaaa gagagttttg
     5161 tttttagtaa gagatcctat agaaagatta aaatctcgca ttaatcatat tgctccaaat
     5221 aagtttgcaa tatatgactt taatttaaat tctaatgtga aagaaatagt aaatgttaaa
     5281 aagtattatt caaaaaatgg cattaatgat tttcctgata ttaatatttt ggaaaacttg
     5341 ttaacattca attttttttg ttataaatta ctgatagatt tttttagaaa gtcccatatt
     5401 ttttatatcg acatggaaga aataaaacca gcaaaagcat ttgatacaat gtgtgtttta
     5461 gctgataaat ttggttttaa aaggccagta gataaaatta actttagtca tatagttttt
     5521 gatgatacaa taggatattt tccaatgaga ttgcatgtgg aagatatgat aattattatt
     5581 actactttat tgagggcaaa acagatga
//
LOCUS       DAPIWJ010000091         5487 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.093, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000091 DAPIWJ010000000
VERSION     DAPIWJ010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5487)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5487)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5487
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.093"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            92..727
                     /locus_tag="RJ259_001470"
     CDS             92..727
                     /locus_tag="RJ259_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDV7367152.1"
                     /translation="MKIAILCASGKVGKEISKEALKRNLEPVCFVRNSSKMNEFLPQA
                     KIVQRDLFELDSKDLIDFDIIIDAFGEWENLSLHKKHIECLSVILQGSKAKLFVVGGA
                     GSLYMDENHTTRLMDMPDFPKEYLDIAKASAEVLEFLRNEKGFKWVYVSPSAIFSPDL
                     PKSNHYKIIGEKFEVNANNESKISYSDYASAMIDIVLNSCYENTRIGVISL"
     gene            complement(739..1042)
                     /locus_tag="RJ259_001471"
                     /pseudo
     CDS             complement(739..1042)
                     /locus_tag="RJ259_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809523.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
     gene            1097..2599
                     /locus_tag="RJ259_001472"
     CDS             1097..2599
                     /locus_tag="RJ259_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
                     /protein_id="HDV7367153.1"
                     /translation="MAKKKEIKLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISD
                     SFMQKYEELLKEQDDGADPEDADEYLADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEA
                     MDEIEKHNDTLKGVLPKVYAKDNLDSKCLGELIDLIGNIAFDTGKSTDVLGHVFEYFL
                     GEFALAEGKQGGQFYTPKCVVELLVTMLEPYKGRVFDPCCGSGGMFVQSEEFVKSHQG
                     RLDDISIYGQESNQTTYKLAKMNLAIRKIESSQVIWNNEGSFLNDAHKDLKADFIIAN
                     PPFNDSDWSGELLENDGRWKYGVPPASNANYAWIQHFLYHLSPNGGVAGFVLAKGALT
                     SNTTNEAAIRKALIEDDLIDCIVNLPAKLFLNTGIPASLWFIRRQKLPKTVKKTLFID
                     ARDLGTRINRRNKTLNKDDINQIANIYKAWKNGTDYEDIKGFCKSVSIDEIRELSYVL
                     TPGRYVGLADSDDEFDFDTRFNELLAKLKSQIKTEQELSEIILKNLEKIK"
     gene            2596..4062
                     /locus_tag="RJ259_001473"
     CDS             2596..4062
                     /locus_tag="RJ259_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDV7367154.1"
                     /translation="MIRTVMDFKFVLRLLEANQFENEVVEYKKNNKDFIVLGKNISAL
                     SNTAALLGIDKAYIIFGIEDGTLNIVGTNFKPKQEKKGNEELESWLHKVLKPNIEFKI
                     HEITEKEIRLVVFEIEATKISPIKFEEKAYIRIGSNRKELDKYPEKEKKLWQVLSGFS
                     FENEIAKSNLNIQDIYDLLDYSKCFDMLDISYDNYSSDEYIIEKLIEHGLVKNLNDSF
                     AITNLGAILFAKDLTKFKGLNRKRIRFIRYQGKNKIHTLEELEGRKGYAIGFQGLISY
                     IMQYVPKNEVIENAIRKDTTLYPEIAIRELVANAIIHQDFTINGRNPMIEMYSDRIEI
                     TNNGKSLIDIKRLIDMPSKSRNDKLANLMRIMGICEERGSGVDKVIDSVEAYQLPAPD
                     FINNEDYFQAILFSHMPLEDMTKQDRIRATYQHCCLKWASREAMTNASLRARFKIGDK
                     QHSKASKIISDTLEAGLIKQQDPENKSTKHVKYVPFFV"
     gene            4281..5423
                     /locus_tag="RJ259_001474"
     CDS             4281..5423
                     /locus_tag="RJ259_001474"
                     /inference="COORDINATES: protein motif:HMM:NF013579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDV7367155.1"
                     /translation="MNNWKKCKLGDIAEITMGQSPKSEFYNFDNIGMPFLQGNRTFGR
                     KYPYFDTYCTEYKKIAKKGEILFSVRAPVGDINFANNDICIGRGLCSMNAKNGENEFL
                     YYLLHNLRSVIINNESGSVFGSVNKNDLQTIEILLPLLEEQRQIATILSSIDDKIELL
                     HEQNKTLEELAQTLFLNWFKDREFNSTISDFISMQNGFAFKSKDFIDYGNNGVIKIKN
                     ISNGIVDIVNTDKISQNTINEVNNKFNINSGDILFAMTGAEIGKMGIVPSTNKKLWLN
                     QRVGMVKERFLGARFLAYIHLTSEFGYDYVINSATGSAQENISATDIENCPFVKLTSE
                     EIVSYSKQLNDFFEKIIFNLGEIQTLENMRDILIPKLLNGEIKITN"
BASE COUNT         2077 a          703 c          986 g         1721 t
ORIGIN      
        1 taaaataata tctacttgat ttttagtagt aaatatattt ataatttcta gattgcattt
       61 tttatgtaaa aatacttaaa aaggagatat tatgaaaata gcaattttat gtgcaagcgg
      121 taaagtaggc aaagaaatca gcaaagaagc tttaaaaaga aatttagagc cagtatgttt
      181 tgtacgcaat agctctaaaa tgaatgaatt tttacctcaa gctaaaatag tacaaagaga
      241 tctttttgaa cttgattcta aagatctgat agattttgat attattattg acgcttttgg
      301 agaatgggaa aatttaagct tacataaaaa gcatatagaa tgcttgagtg taattttaca
      361 aggaagtaag gctaaattat ttgttgtagg gggtgctgga agtttgtata tggatgagaa
      421 tcatactaca agacttatgg atatgcctga ttttcctaaa gagtatttgg atatagctaa
      481 agcaagtgcg gaagtattgg aatttttacg caatgaaaaa ggttttaaat gggtatatgt
      541 gagcccatct gctatttttt caccagatct tccaaaaagc aatcattata aaatcatagg
      601 cgaaaaattt gaagtgaatg ccaacaatga aagtaaaatc agctatagtg attatgctag
      661 tgctatgata gacatagtgc ttaattcttg ctatgaaaac acacgcattg gggtaataag
      721 cctataaata aagatgcctt atgcttttaa ggcatctttt atttctttta aatacttatt
      781 ttgaagtttt aaattttctt ctaaagaatt taaaatctct tcgctagttc ttaggatttt
      841 ttcttctttt acatttggat ttttagcact taaatcataa tttctttctt caagttcttt
      901 tttgctaagc agccaagaat tagcagtgat ttttcttttc tttgtagcat tttagaaatt
      961 ccttaaaatg tgcgtattct aaaggcttgt ttttagtaag cttgtaaggt ggtataagct
     1021 cgtagtaata caccttatca tcatttgctt ttaaaatact atttgttata cttaataaaa
     1081 ttatttaagg ataaaaatgg caaagaaaaa agaaataaaa ctagaagatg cgttatggaa
     1141 aagtgctgat aaattacgca aaaatatcga cgcagcagag tataaacaca tagttttagg
     1201 acttatattt ttacgctaca ttagcgatag ctttatgcaa aaatacgaag agttattaaa
     1261 agaacaagat gatggagccg acccagaaga tgcagatgaa tacctagctg acaatatctt
     1321 cttcgttcca gaaaaatctc gctacaacta cataagagat aacgccaaaa atcccaaaat
     1381 aggcaaaatg ctagatgaag caatggacga gatagaaaaa cacaacgata ctctaaaagg
     1441 agttttgcca aaagtctatg ccaaagataa cttagatagt aaatgcctag gcgaacttat
     1501 agatcttata ggaaatatcg cctttgacac tggtaaaagc accgatgttt taggtcatgt
     1561 atttgagtat tttttaggtg aatttgccct agctgaaggc aaacaaggcg gacaattcta
     1621 cactccaaaa tgcgtcgtag agctcctagt aactatgctt gagccatata aaggcagagt
     1681 gtttgatcct tgctgtggaa gtggcggtat gtttgttcaa agcgaagagt ttgtaaaatc
     1741 tcaccaaggc agactagatg acatctcaat ctatggtcaa gagtcaaatc agactaccta
     1801 caaactcgcc aaaatgaacc tagccataag aaaaatcgaa agctcacaag tgatatggaa
     1861 caacgaaggc tcatttttaa acgacgctca taaagactta aaagccgatt ttattatagc
     1921 caatccacca tttaacgact cggactggag cggcgaactg ttagaaaacg atggcagatg
     1981 gaaatacggc gtcccaccag caagcaacgc caactacgct tggatacagc actttttata
     2041 tcatctatca ccaaacggcg gtgtagcggg atttgtccta gctaaaggcg cacttacaag
     2101 caacaccaca aatgaagcag ccattagaaa agcacttatt gaagatgatt tgatagattg
     2161 tatagtaaat ctacccgcaa agctgttttt aaatacaggt attcctgcat cactttggtt
     2221 tataagacgc caaaagctac caaagacagt caaaaaaacg ctttttatag atgcaagaga
     2281 tttaggaact aggataaata gacgcaacaa aaccctaaac aaagacgata taaaccaaat
     2341 cgcaaatatt tataaagcat ggaaaaacgg cactgattat gaagacataa aaggcttttg
     2401 taaaagtgtt agcatagatg agataagaga gctttcttat gtgcttaccc cagggcgtta
     2461 tgtggggctt gctgatagtg atgatgagtt tgattttgat actagattta acgagctttt
     2521 agcaaagtta aaatcccaaa tcaaaactga gcaagagcta agtgaaatta tcttaaaaaa
     2581 cttagagaag attaaatgat aaggacggtt atggatttta aatttgtact aagattgtta
     2641 gaagcaaacc aatttgagaa tgaagtggtt gaatataaga aaaataataa agattttatt
     2701 gtattaggaa aaaatatttc tgctttgtca aatacagctg ctttactggg tatagataaa
     2761 gcatatataa tttttggcat tgaagatggt acgcttaata ttgtcggtac aaattttaaa
     2821 ccaaaacaag aaaaaaaggg aaatgaagag cttgaaagtt ggttgcataa agttttaaaa
     2881 cctaatatag aatttaaaat tcatgaaata acggaaaaag aaatcaggtt ggtggtattt
     2941 gaaattgagg caactaagat ttcaccaata aaatttgaag aaaaagctta tataaggata
     3001 ggcagtaata gaaaagaatt ggataaatat ccagaaaaag agaaaaaatt atggcaagtt
     3061 ctttcaggct tttcttttga aaatgaaata gctaaatcaa atttaaatat tcaagatata
     3121 tatgatttat tggattacag taagtgtttt gatatgttag atatatctta cgataattat
     3181 tcttcagatg aatatattat tgaaaaatta attgagcatg gtttagttaa aaatttgaat
     3241 gattcttttg ctattactaa tttaggtgct atcttgtttg caaaagattt aacaaaattt
     3301 aaaggcttaa atagaaaaag aattagattt ataaggtatc aaggtaaaaa caaaattcat
     3361 acattagaag aattagaagg tagaaaagga tatgctattg gttttcaagg attgatttca
     3421 tatataatgc agtatgttcc taaaaatgaa gtgatagaga atgcgataag aaaagatact
     3481 actttatatc cagaaatcgc aataagggaa cttgtagcta atgcgataat tcatcaagat
     3541 tttacaataa atggtagaaa tccaatgatt gaaatgtata gcgatagaat agaaataaca
     3601 aacaatggaa aatctcttat agatattaaa cgattaatag acatgccatc aaagtcacgg
     3661 aatgataagt tggctaattt aatgagaata atgggtatat gtgaagaaag gggttctggt
     3721 gtggataagg ttatagatag cgttgaagct tatcaattgc cagcaccaga ttttataaat
     3781 aatgaagatt attttcaggc aattttattt tctcatatgc ccttagaaga tatgaccaaa
     3841 caagatagaa taagagctac atatcaacat tgttgtttaa aatgggcttc aagagaagcc
     3901 atgacaaatg ctagcttaag agctagattt aaaataggtg ataagcaaca ttcaaaagct
     3961 tcaaaaataa ttagcgatac tttagaggca ggtttgatta agcagcaaga tccagaaaat
     4021 aaatctacaa aacatgttaa atatgttcca ttttttgttt aggttttatg tcatgctttc
     4081 gtcaaaatta tttaaaaata gcttaaatta tatatcacat agctttaaaa tacgagcttt
     4141 tagcgttttt tcttctgtca tgctttcgtc attatctttt aaaccaagct taaacaaagg
     4201 aaattccgaa tttaaattct cgaatttatt tcgtgtattt tttggatttt ttacgcaaat
     4261 aaattccaag ggattaagat atgaataatt ggaaaaaatg taagcttggg gatattgcag
     4321 agataacaat ggggcaatct ccaaaatcag aattttataa ttttgataat ataggtatgc
     4381 catttttaca aggcaatagg acttttggta ggaaatatcc ttattttgat acatattgca
     4441 ctgaatataa aaaaatagct aaaaagggtg agattttatt tagtgtgaga gctcctgtcg
     4501 gagatattaa tttcgcaaac aatgatattt gtatcggtag gggcttatgc tccatgaatg
     4561 caaaaaatgg tgaaaatgaa tttttatatt acttattaca caacttaaga agtgttatta
     4621 taaataatga gtctggtagt gtttttggct cggtaaataa aaatgattta caaacaatag
     4681 aaattttatt accgctatta gaagagcaaa ggcaaattgc tactatctta agtagtattg
     4741 atgacaagat agaactacta cacgagcaaa acaaaaccct agaagaactc gcccaaactc
     4801 tttttttaaa ttggtttaaa gatagagaat ttaatagcac tattagtgat tttatatcta
     4861 tgcaaaatgg ttttgctttt aagagtaaag attttataga ttatggtaac aatggagtaa
     4921 taaagataaa aaatatttca aatggaattg tagatattgt aaatactgat aagataagcc
     4981 aaaatactat aaatgaagtt aataacaaat ttaatataaa ttctggagat attttatttg
     5041 caatgactgg tgctgagata ggtaaaatgg gtatcgttcc aagtacaaat aaaaaattat
     5101 ggttaaatca gcgagtagga atggtaaaag aaaggttttt aggagctagg tttttagcat
     5161 atatacattt aacttctgaa tttggttatg actatgttat caattcagct actggcagtg
     5221 ctcaagaaaa tataagtgcg acagatattg aaaattgtcc atttgttaag cttacgagtg
     5281 aagagattgt gagttattct aaacaattaa atgatttttt tgaaaaaatt atatttaatc
     5341 taggagaaat tcaaacccta gaaaatatgc gtgatatact tatcccaaaa ctcctaaatg
     5401 gagaaataaa aataactaac taaaggagaa tgtgtgaata aatataagtt tgtaaaattt
     5461 caggttaaaa actttcgttc tttattg
//
LOCUS       DAPIWJ010000092         5460 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.094, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000092 DAPIWJ010000000
VERSION     DAPIWJ010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5460)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5460)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5460
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.094"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            82..4572
                     /gene="gltB"
                     /locus_tag="RJ259_001475"
     CDS             82..4572
                     /gene="gltB"
                     /locus_tag="RJ259_001475"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HDV7367156.1"
                     /translation="MDLENILENNQSIGLYHPKNEHDACGIAAVANIRGIASYKVICD
                     ALEILMNLEHRGGTGAEENSGDGAGILIQIPHDFFKTQELGFELPKKGDYAVAQMFLS
                     PNTDAKEEAKEIFLQGLKDKKLEFLGFREVPFNPSDIGASALKAMPYFLQAFVKKPSK
                     ISAGLEFERVLYSTRRLIEKRAINVPKFYFSSFSSRTIVYKGMLLSTQLSDFYLDFKD
                     VNMKSAIALVHSRFSTNTFPSWERAHPNRYMVHNGEINTIRGNVDSIRAREGLMQSEY
                     FENLDEIFPIIAKLSSDSAMFDNTLEFLALNGRTLEEAFMMMVPEPWHKNENMESKKR
                     AFYEYHSLLMEPWDGPAAIVFTDGVIMGASLDRNGFRPSRYYLTKDDMLILSSETGAL
                     KLDEKNIKAKKRLEPGKLLLVDTARGRVIADNEIKEHYANAKPYKKWLKNLVELEKQK
                     SGVYKHQFLKEDEVLKLQKAFGWSYDELKMSVAAMAQNGKEAIAAMGVDTPLAILSKT
                     YQPLYNYFKQLFAQVTNPPLDAIREEIVTSTRIYLGSEGNLLKPDENNAKRVKIALPV
                     ISNEELFEVKALNKFQVKEFSILYDYSKKTLEKALDELCVKIEDEVKKGVSIIILSDK
                     GVDEKNAYIPALLAVSGVHNHLVRKNLRTHTSLIIESGEPREIHHFACLLGYGATVIN
                     PYLVYESIQKLIANKDLNLSYEKAVENFIKASSSGIVKIASKMGVSTLQSYNGSALFE
                     CLGLSSKVIDKYFTSTTSRIEGMDLEDFEKELIALHKHAFNDTHKALDSKGIHGFRSA
                     KEEHLIDPLVIFNLQQACRNKDYKSFKKYSALVDEKQVNLRSLMEFDFSEAISIDKVE
                     SVESIVKRFRTGAMSYGSISKEAHECLAQAMNKIGAKSNSGEGGEDEERYEIKEGVDK
                     NSAIKQVASGRFGVDLNYLSHAKEIQIKVAQGAKPGEGGQLMGFKVYPWIAKARHSTA
                     GVTLISPPPHHDIYSIEDLAQLIYDLKHANKDAKISVKLVSENGIGTVAAGVAKAGAN
                     LILVSGYDGGTGASPRTSIPHAGIPWELGLAETHQTLILNKLRDRVRLETDGKLMNGR
                     DLAIAALLGAEEFGFATAPLIVLGCTMMRVCHLNTCPFGIATQDTELRDRFKGKVDDV
                     INFMYFIAEELREYMARLGFERLDDMIGRVDKLRQKSVQGKAGKLNLDKILKSLPTYN
                     RTAVHFKDYKDNKLEKTIDYRILLPLCKNAVEKKEPIKLSLEVGNQSRTFATMLSSEI
                     LKTYGKDALDEDSIHIKAIGNAGNSFGAFLLKGIKLEIIGDSNDYLGKGLSGGKIIAK
                     ISNEATFSPEENIIAGNACLYGATKGEVYLDGIAGERFCVRNSGALAVVLGTGVHGCE
                     YMTGGQVVVLGDVGANFAAGMSGGVVYIFGRHNEAHVNTELVDIKDLNAKDEKELKAV
                     IEKHITYTDSKKAKDILEKFDKKDFFKVMPRDYEKMLKMLDLCKNEKDPNLAAFLKIT
                     QK"
     gene            4582..>5460
                     /locus_tag="RJ259_001476"
     CDS             4582..>5460
                     /locus_tag="RJ259_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF262 domain-containing protein"
                     /protein_id="HDV7367157.1"
                     /translation="MAGFQSPITINEAMQRIKNNEYLLPAFQREYVWEPWQIEELFDS
                     LIRGYPISSMLFWKVKDESKTAWKFYRFLEYYRESYHTHNDYFNTSNHKDFYAILDGQ
                     QRLTSLYFALFGNYDIHRSYNKWENNDRYFKICHFYFNLTQSKKPENENIEYEFLWLD
                     KLETKEQNIYIDKYQQKWFKCQYLYQYDSGRVRKIAKEFNLNENEEDRLDLLHQKIFD
                     KNLINFYLEEEQDPDKAVNIFIRINSNGEPLDYSDILFSIAIANWNKIDARTEINNLV
                     DKINENFDISKDLILKG"
BASE COUNT         1951 a          718 c         1084 g         1707 t
ORIGIN      
        1 attatatcga ttttaaaaaa atgtatgcta taatccttat aaagctaaca aaatttaaat
       61 cagtcttata aggagagcaa aatggattta gaaaatatcc tagaaaataa tcaaagcata
      121 ggtttatatc acccaaagaa cgaacacgat gcctgtggta tcgctgcagt tgctaatata
      181 cgcggtattg cttcttataa ggttatttgt gatgctttag aaattttgat gaatcttgaa
      241 caccgaggtg gtacaggagc tgaagaaaat tcaggtgatg gggcggggat tttaatccaa
      301 attccacatg atttttttaa aactcaagaa ttgggttttg aacttcctaa aaagggtgat
      361 tatgctgtag cacagatgtt tttatcaccc aatactgatg caaaagaaga agcaaaagaa
      421 atatttttac aaggtttaaa ggataaaaaa cttgaatttt taggttttag agaagtgcct
      481 tttaatccta gcgatatagg tgcaagtgct ttaaaagcta tgccttattt tttacaagcc
      541 tttgtaaaaa aaccaagtaa aataagtgca ggacttgagt ttgaaagagt gctttatagt
      601 acgcgtcgac ttatagaaaa aagagctatt aatgtgccaa aattttattt ttcaagtttt
      661 tcttcacgca ccatagttta taaaggaatg cttctttcaa ctcaattgag cgatttttat
      721 cttgatttta aagatgtcaa tatgaaatca gccatcgctt tggtgcattc tcgcttttcg
      781 actaatacct tcccaagttg ggaaagagcc catccaaacc gttatatggt gcataatgga
      841 gagattaata ccatacgcgg aaatgttgat agcataagag ctagagaagg cttgatgcaa
      901 agtgagtatt ttgaaaattt agatgaaatt tttcctatca tagctaagct tagcagtgat
      961 tctgcaatgt ttgataatac tttagaattt ttagctctaa atggtcgtac tttagaagaa
     1021 gcttttatga tgatggtgcc agaaccttgg cataaaaatg aaaatatgga aagcaaaaag
     1081 cgtgcttttt atgaatatca ttctttattg atggagcctt gggatggacc tgctgctata
     1141 gtttttactg atggagtgat tatgggggcg agtttggata gaaatggttt tcgtccttca
     1201 aggtattatc ttacaaaaga tgatatgctc atactttcaa gtgaaacagg ggctttaaaa
     1261 cttgatgaaa aaaatatcaa agctaaaaaa cgcttagaac ctggaaaact tttactcgtt
     1321 gatacagcaa gaggtagggt tatagctgat aatgaaatca aagagcatta tgctaatgct
     1381 aagccttata aaaaatggct taaaaattta gttgaacttg aaaaacaaaa aagcggagtt
     1441 tataaacatc agtttttaaa agaagatgag gttttaaaac ttcaaaaagc ttttggttgg
     1501 agttatgatg agcttaaaat gagcgtggct gctatggctc aaaatggtaa agaagctata
     1561 gcagctatgg gtgtagatac tcctttggct atactttcta aaacttatca acctttgtat
     1621 aattatttta aacaactttt tgcacaagta actaatcctc ctcttgatgc cataagagaa
     1681 gagattgtta cttctacaag gatttatcta ggaagcgaag gcaatttatt aaaacccgat
     1741 gaaaacaatg caaaacgcgt aaaaatagcc ttgcctgtga taagcaatga agaacttttt
     1801 gaagttaagg ctttaaataa atttcaagtt aaagaatttt ctatacttta tgattattct
     1861 aaaaaaactt tagaaaaggc tttagatgaa ctttgcgtta agatagaaga tgaggttaaa
     1921 aaaggtgttt ctattatcat tttaagcgat aaaggagtgg atgaaaaaaa cgcttatatc
     1981 cctgctttgc ttgctgtttc tggagtgcat aatcatctag taagaaaaaa tttaagaaca
     2041 catacaagtc ttatcatcga aagtggtgaa cctagagaaa ttcatcattt tgcatgtctt
     2101 ttaggttatg gtgcgactgt tattaatcct tatttggttt atgagagtat acaaaaactc
     2161 attgccaata aagatttaaa tttaagttat gaaaaggcgg tagaaaattt catcaaggca
     2221 agttcaagtg gtatagtcaa aattgcttct aaaatggggg tttctacctt gcaaagttat
     2281 aatggctctg cactttttga atgtctgggc ttaagctcta aggtgattga taaatacttc
     2341 acttctacaa cttcacgcat tgaaggtatg gatttagaag attttgaaaa agaactcatt
     2401 gctttacaca aacatgcttt taacgataca cataaggctt tagattctaa aggaattcat
     2461 ggttttagaa gtgctaaaga agaacattta atcgatccgc ttgtgatttt taatcttcag
     2521 caagcctgtc gcaacaaaga ctataaaagc tttaaaaaat actcggcttt agtagatgaa
     2581 aaacaagtta atttgcgttc tttgatggaa tttgatttta gtgaagctat cagtatagat
     2641 aaggttgaaa gtgtagaaag tatagttaaa cgctttagaa caggggcgat gagttatggt
     2701 tctatttcta aagaagcaca cgagtgttta gcacaggcta tgaataaaat aggtgctaaa
     2761 tcaaattcag gtgaaggtgg tgaggatgaa gaacgctatg aaatcaaaga gggtgtggat
     2821 aaaaactcag ccattaagca agtagcaagt gggcgttttg gcgtggattt aaactactta
     2881 agtcatgcaa aagaaattca aatcaaagtc gctcaaggtg caaaaccagg tgagggcgga
     2941 caattaatgg gctttaaagt ctatccttgg atagctaagg ctagacattc tactgcaggt
     3001 gtgacgctta tttccccacc tcctcatcat gatatttatt ctattgagga tttggctcaa
     3061 ctcatttatg atttaaaaca tgcgaacaaa gacgctaaaa tttcagtaaa acttgtaagc
     3121 gaaaatggca taggaacggt tgctgcaggt gtggctaagg caggcgcgaa tttaatcctt
     3181 gtttcaggtt atgatggagg tacgggtgca agtcctagaa cttctatacc gcatgctgga
     3241 attccttggg agttaggctt agctgaaacg catcaaactt tgatcttaaa taagcttaga
     3301 gatagggtaa gattagaaac tgatggaaag cttatgaatg ggcgtgattt agccatagca
     3361 gcacttttag gagctgaaga atttggtttt gcaaccgctc ctttgattgt tttaggttgt
     3421 acaatgatga gagtttgtca tctaaatacc tgtccttttg gtatagccac tcaagataca
     3481 gaacttagag atcgtttcaa aggcaaagta gatgatgtga ttaatttcat gtattttata
     3541 gctgaggagc ttagagaata catggcaagg cttggttttg aacgcctaga tgatatgata
     3601 ggtcgcgtgg ataaactccg ccaaaaaagt gtgcaaggta aagcaggaaa gctaaattta
     3661 gataaaattt taaaatcctt gcctacttat aatagaaccg ctgtgcattt taaagattat
     3721 aaagacaata aacttgaaaa aacgattgat tatagaattt tactaccact ttgtaaaaat
     3781 gctgtggaga aaaaagagcc tatcaaactt tctttagaag taggaaatca aagtcgtact
     3841 tttgcaacta tgctttcaag tgaaatttta aaaacttatg gaaaagatgc tttagatgaa
     3901 gatagtatcc atatcaaagc tataggcaat gcaggcaata gctttggagc gtttttgtta
     3961 aagggtatta aacttgagat tataggcgat agcaatgatt atttaggcaa gggtttaagt
     4021 ggtggtaaaa tcatagcaaa aatttcaaat gaagccactt tttcacctga agaaaatatc
     4081 atcgcaggaa atgcttgttt atacggagct acaaaaggtg aagtgtattt agatggtata
     4141 gcaggggaaa gattttgtgt aagaaattca ggggctttgg ctgtggtttt aggaacaggc
     4201 gtgcatggtt gtgaatatat gacaggtgga caagttgtag ttcttggaga tgtgggtgcg
     4261 aatttcgctg ctggtatgag tgggggcgtt gtttatatct ttggaagaca caatgaagct
     4321 catgtaaata ccgagcttgt ggatattaaa gatcttaatg ctaaggatga aaaagaatta
     4381 aaagctgtga tagaaaaaca tatcacttat acagattcta aaaaggctaa agatatttta
     4441 gaaaaattcg ataaaaaaga cttttttaaa gtcatgccaa gagattatga aaagatgtta
     4501 aaaatgcttg atctttgtaa aaatgaaaaa gatccaaatt tagcagcatt tttgaaaatc
     4561 acacaaaaat aaggagtaaa aatggcagga tttcaatcac caataacaat taatgaagca
     4621 atgcaaagaa taaaaaacaa tgaatattta cttccagcat ttcaaagaga gtatgtttgg
     4681 gagccttggc agatagaaga attatttgat tcactaatac gaggatatcc tataagttct
     4741 atgctttttt ggaaagtaaa agatgaaagc aagacagctt ggaaatttta tagattttta
     4801 gaatattatc gtgaatcgta tcatacgcat aatgattatt ttaacacctc aaaccataaa
     4861 gatttttatg cgattttaga tggacaacaa agattaactt cgctttattt tgctttgttt
     4921 ggaaattatg atattcacag atcatataat aaatgggaga acaatgatag atattttaaa
     4981 atttgtcatt tttattttaa tctcactcaa agcaagaaac cagaaaatga aaatattgaa
     5041 tatgaatttt tatggcttga taaattagaa acaaaagaac aaaatattta tattgataaa
     5101 tatcagcaaa aatggtttaa gtgtcagtat ttatatcaat atgattcagg aagagtaaga
     5161 aaaatagcaa aagaatttaa tttaaacgaa aatgaagaag atagattaga tctattgcat
     5221 caaaagatat ttgataagaa tttaattaat ttctatttag aagaagaaca agatccagat
     5281 aaagcggtta atatttttat tagaattaat tcaaatggtg agcctcttga ttattctgat
     5341 attttattta gtattgctat tgcaaattgg aataaaattg atgcaagaac agaaataaat
     5401 aatcttgtag ataaaattaa tgaaaatttc gatatctcta aagatttaat ccttaaagga
//
LOCUS       DAPIWJ010000093         5418 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.095, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000093 DAPIWJ010000000
VERSION     DAPIWJ010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5418)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5418)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5418
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.095"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..311)
                     /locus_tag="RJ259_001477"
     CDS             complement(<1..311)
                     /locus_tag="RJ259_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HDV7367158.1"
                     /translation="MLNNADILVKKAIDNWSYEFLDNFLNNENLSDEHLLLMYKLGRY
                     NFFLENIDYIDRLSSFLNTDSKDLYDFILTCLKDKTVNENFLLGNYKNSYMSFLSSHL
                     DV"
     gene            complement(305..1498)
                     /locus_tag="RJ259_001478"
     CDS             complement(305..1498)
                     /locus_tag="RJ259_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HDV7367159.1"
                     /translation="MHGIGTPEDLEKYKKYKEIDELSLITRDQCPITYSKNIEIINSR
                     QFPLFCGCIEQDQKKDIICEEQFAVCRDSGVLFLNKLIPLDILYKNGHYAGNIGKIWD
                     EHHKEFAKFIFQIRPKNILEIGGGHGKLSQFFLEMDNVNWTIVEPNIENKFENVNYID
                     GFFSKDICNNKQYDTIIHSHVLEHVYDPNEFFSEISSFLNNDKGYMIFSIPNMSKWLK
                     NKYSNCLFFEHTILLDENVVDYILGNNNFTIIVKKYFKEHSIFYLAKKDVRSVKITLE
                     NKYLENKVDFGNMLRFYKNKVEYINSYIKQTPKKVYLFGAHLFSQNLIYSGLDTLKIV
                     CILDNDLNKQKKRLYGTKFIVRSPKILINDSNALVILNAGIYNDEIEKDIIENINNKI
                     EIIKC"
     gene            complement(2161..2490)
                     /locus_tag="RJ259_001479"
     CDS             complement(2161..2490)
                     /locus_tag="RJ259_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367160.1"
                     /translation="MKNYKLDEMIRGWFVGNFDPSVFKTNDVEVGVKEYKKGDTEEKH
                     HHKIATEITVIISGKVRMNDKIYSKGDIVMINPGEVTDFEALEDAINVVVKLPGTNND
                     KYLGECQ"
     gene            complement(2493..2828)
                     /locus_tag="RJ259_001480"
     CDS             complement(2493..2828)
                     /locus_tag="RJ259_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HDV7367161.1"
                     /translation="MLKKLTEKYISAFNKKDINEVANLLNENFVLEDPVVKRIEGKEE
                     CLKAIENIFKNCNKLSFSAKNIFQDKNITFIEFILILDDIRLEGVDIIEWHDEKIVEL
                     RAYLDIPKG"
     gene            complement(2821..3546)
                     /locus_tag="RJ259_001481"
     CDS             complement(2821..3546)
                     /locus_tag="RJ259_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDV7367162.1"
                     /translation="MLNIVVPIAGKSYFFDNEKDGFPKPFIEICGKTMLEHFVKNYEN
                     VKNKRFIFILKEEDVKRYHLDDAINVLTNNQSKIIILKNETQGMVCSVLMAIDEINLN
                     DSLLIVNMDQIFEYDLNEVISELSLNDAGVLSFESVHPRWAYVKCDENNFVLEAFEKK
                     PVSKNAIAGFYYFNKADFFVKSAFDMIKKDVNYEGKYFIASTLNELILQDKKIINISI
                     DKDRYFTFYSHAKINEYERIKNA"
     gene            complement(3540..4178)
                     /locus_tag="RJ259_001482"
     CDS             complement(3540..4178)
                     /locus_tag="RJ259_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HDV7367163.1"
                     /translation="MTKIKAIIFDMDGVLIEAKDWHYEALNRALKLFGMEITRYEHLT
                     TFDGLPTKDKLKMLSLERGLPKSLHSFINELKQQYTMEIVYSLCKPRFHHEYALSKLK
                     FEGYKMAVCSNSIRNSIKVMMKKSALENYLDFYISNEDVKKGKPDPEMYIKAIERLKL
                     NPKECMIVEDNENGIKAARASGANVMIVDEVSEVNYENIKNHICKFEEELKC"
     gene            complement(4171..4809)
                     /locus_tag="RJ259_001483"
     CDS             complement(4171..4809)
                     /locus_tag="RJ259_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367164.1"
                     /translation="MIIISHRGFWHNHNEKNSITAFDRSFLNSYGLETDLRDVAGGGI
                     VVSHDMASENCLKLEDFFKLYKKYNTNLPLALNIKADGLQIPLKKLIQKYKITNYFVF
                     DMSVPDALLYIDLNFNVFTRQSEYEKEPSFYDKACGIWMDEFYSHWIDKNTIKKHIDN
                     GKSVGIVSPELHKRDYKKEWQEYKQIEKELHIQEQLMICTDYPDEARRFFND"
     gene            complement(5052..>5418)
                     /locus_tag="RJ259_001484"
     CDS             complement(5052..>5418)
                     /locus_tag="RJ259_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HDV7367165.1"
                     /translation="FTKEFFDKPLKYENLGIFLKPQEFGRLKQDSKLFDVTKRYLNNF
                     IEALEERIDLEKAKLFKEKDVLNYLKENKELRVKLKNILDKELVHIKQHRPDIVASWK
                     YYQEFEKMCKELDQELTLE"
BASE COUNT         1881 a          919 c          473 g         2145 t
ORIGIN      
        1 acatccaaat gggaagataa aaaactcata tatgaatttt tataatttcc aagtaaaaaa
       61 ttttcattta cagttttatc ttttaagcat gtgagtataa aatcatataa atctttagaa
      121 tcagtattta aaaatgatga taatcgatca atgtaatcaa tattttctaa aaaaaaatta
      181 tatcgcccca atttatacat caacaataaa tgctcatcgg ataaattttc attatttaaa
      241 aaattatcaa gaaactcata actccaatta tctatagctt ttttaactaa aatatctgca
      301 ttatttaaca ttttataatc tcaatcttat tatttatatt ttcaataata tctttctcta
      361 tttcatcatt ataaatacct gcatttaaaa ttactaaagc attgctatcg tttattagaa
      421 ttttaggtga gcgaactata aattttgtac cataaagccg ttttttctgt ttatttagat
      481 cattatccaa tatacaaaca atctttaaag tatctaatcc actatatatt aagttttgac
      541 taaataaatg tgctccaaat aaataaacct tctttggagt ttgcttaatg taagagttaa
      601 tatactcaac tttattttta taaaacctta acatattccc aaaatctact ttattttcaa
      661 ggtatttatt ttccagagta atttttacag atcgaacatc tttttttgcc aaataaaata
      721 tggaatgttc cttaaaatat ttcttgacaa taattgtaaa attattattt cccaatatat
      781 aatcaactac attttcatct aataaaatag tatgttcaaa aaataaacaa ttgctatatt
      841 tattttttag ccacttggac atattgggta ttgaaaatat catatatcct ttatcgttat
      901 ttaaaaaact tgatatttca gaaaaaaatt catttggatc atatacatgt tcaagaacat
      961 gagaatgtat aattgtatca tactgtttat tgttgcatat atctttacta aaaaatccat
     1021 cgatataatt tacattttca aacttatttt caatatttgg ttctactata gtccaattaa
     1081 cattatccat ttctaaaaaa aattgtgata attttccatg cccaccacca atttctaata
     1141 tattttttgg tctaatttga aaaataaatt ttgcaaattc tttatgatgc tcatcccata
     1201 tttttccaat attaccagca taatgtccat ttttatacaa gatatccaaa ggaattaatt
     1261 tatttaaaaa taaaacacca ctatcccgac aaactgcaaa ttgttcttca caaataatat
     1321 cttttttttg atcttgctca atacaaccac aaaataatgg aaattgtctt gaattaatta
     1381 tttctatatt tttactatat gtaatagggc attgatctct agtaattaaa cttaattcat
     1441 caatttcttt atatttttta tatttttcca aatcttcagg tgttccaatc ccatgcattt
     1501 gcttatcctc tatattataa acacctattt tagcaccatt ttttatagca taattataca
     1561 ctggacaagt ataaaattca ttattaaccc tatcattttc tataatcata tctatagcac
     1621 tttcaacaaa tatttttccc ttattaaaaa gataaatccc aactgtagca aattcgctaa
     1681 tagcttcttt ttctttaact tctactacta aatcaccttt caatcttaca aacgaccatt
     1741 ttgaattttt ttctttatca ataaaagtca atatcgaacc atccaaacct cgtttgaaac
     1801 catcattaat aaaatcagtt atattaacat caacaatttg atcagaattt gctatcatta
     1861 agggtgtatc attattaata tattttcttg cataaagcac agtacaagct gttccttgtg
     1921 taagcttatc aatagctata aattcaacat taaaattatt tttgatttca tcaactagct
     1981 ttttttcttt aatcaaatgt tcttttcttg ctattaaaat atatcttgca tctttatatc
     2041 ttaaattttc aagcactcta actaccattg gcttacccaa aacatccata aaaggctttg
     2101 gtttatcaaa accagccttt gcaaaacgac ttccaagtcc agccatagga atcactatat
     2161 tcattgacat tctcccaaat atttatcatt attagtccct ggaagtttta cgacaacatt
     2221 tattgcatct tctaaggctt caaaatctgt gacttcacct ggattaatca ttactatatc
     2281 tcctttagaa tatatcttat cattcattct tactttaccg ctaataataa cagtaatttc
     2341 ggttgcgatt ttatgatgat gcttttcttc agtatcacct tttttatatt ctttcacgcc
     2401 aacttccaca tcattagttt taaaaacact tggatcgaaa tttcctacaa accaaccacg
     2461 aatcatttca tctaatttat aatttttcac aatcaacctt tcggaatatc caaataagca
     2521 cgtaactcaa caattttttc atcatgccat tctataatat ccacaccttc aagtctgata
     2581 tcatcaagta ttaaaataaa ttctataaaa gttatatttt tatcttgaaa aatattttta
     2641 gcactaaagc ttagtttatt acaattttta aaaatatttt caatagcttt taagcattct
     2701 tctttgcctt ctattctttt tacaaccgga tcttctaaaa caaaattctc atttaacaaa
     2761 tttgctactt cattgatatc ttttttatta aaagcactga tatatttttc agttaatttt
     2821 ttaagcattt ttaatccttt catattcatt aattttcgca tgagaataaa aagtaaaata
     2881 acgatcttta tcaattgaaa tatttataat tttcttatct tgtaaaatta attcatttaa
     2941 tgttgaagca ataaaatatt ttccttcgta attaacatct tttttaatca tatcaaaagc
     3001 tgattttaca aaaaaatcag ccttattaaa ataataaaat cccgctattg catttttact
     3061 tacaggtttt ttttcaaaag cttctaaaac aaaattattt tcatcgcatt ttacataagc
     3121 ccatcttgga tgaacactct caaaactcaa aacacccgca tcatttaaag ataattctga
     3181 aataacttca tttaaatcat actcaaaaat ttgatccata ttaacaataa gcaaagaatc
     3241 atttaaatta atctcatcaa tagccatcaa aacagaacaa accatacctt gtgtttcatt
     3301 tttaagaatg ataattttgc tttgattatt agttaaaaca ttaattgcat catctaaatg
     3361 ataacgcttt acatcttctt ctttaagtat aaaaataaaa cgtttattct tgacattttc
     3421 ataattttta acaaaatgtt ctaacatagt ttttccacaa atttcgataa atggctttgg
     3481 aaaaccgtct ttttcattat caaaaaaata acttttaccc gcaataggaa ccactatatt
     3541 taacatttca attcctcttc aaatttacaa atatgatttt taatattttc ataatttact
     3601 tcactaactt catctacaat catcacatta gccccacttg ccctagctgc ttttatacca
     3661 ttttcattat cttctactat catgcattct ttaggattta gctttaatct ttctatagct
     3721 ttgatataca tttcagggtc aggttttcct ttttttacat cttcattgga aatataaaaa
     3781 tctaaataat tttcaagagc tgattttttc atcattactt taatgctatt gcgtatagaa
     3841 ttagaacaaa ctgccatttt ataaccttca aattttagct ttgataaagc atattcatga
     3901 tggaacctag gtttgcataa actataaact atttccatag tgtattgctg ttttaattca
     3961 tttataaaag aatgtagcga tttaggcaac cctctttcca atgaaagcat ttttaattta
     4021 tccttagttg gcaagccatc aaaagttgtt aagtgctcat atctagtaat ttccatgcca
     4081 aaaagtttta aagctctatt taaagcttca taatgccaat ctttagcttc aatcaaaact
     4141 ccatccatat cgaaaataat ggcttttatc ttagtcatta aagaatctcc ttgcctcatc
     4201 aggataatca gtgcaaatca ttaattgttc ttgtatatgt aactcttttt ctatttgttt
     4261 gtattcttgc cattctttct tataatctct tttatgaagc tctggagaaa ctataccaac
     4321 tgatttgccg ttatcaatat gcttttttat ggtattttta tctatccaat gtgaataaaa
     4381 ctcatccatc caaataccac aagctttatc ataaaaacta ggctcttttt catattcact
     4441 ttgtctagta aagacattaa aattcaaatc aatataaagt aaagcatcag gaactgacat
     4501 atcaaataca aaataatttg taattttata tttttgaata agtttcttaa gtggaatttg
     4561 aagaccatca gcctttatat ttaaggctaa aggtaaattt gtgttatact ttttataaag
     4621 cttaaaaaaa tcttctaatt ttaaacaatt ttcacttgcc atatcatgtg atacgactat
     4681 accccccccc gccacatctc ttaaatctgt ttcaagaccg tatgaattaa gaaaacttcg
     4741 atcaaaagca gtaatagaat ttttttcatt atgattatgc caaaatcctc tatgagatat
     4801 tattatcact tattaatcct tactttttat tgctttaaat attttaatat atcataccat
     4861 acttacttct taaattaggt acattttcgc tttaaaattt aaaaactatc taatggaaac
     4921 accaatcatt tccttagtta ctaatattat tgatttataa tattgataaa tttctaagaa
     4981 aaaatactaa tactcttgat tgataatgtt aacttcaact tttcttctca aaaaattaca
     5041 atgctcgact tttactctaa tgttaactct tgatccaact ccttgcacat tttttcaaat
     5101 tcttgatagt atttccaaga agctactata tctggacgat gttgtttaat atgaacaagt
     5161 tctttatcta atatgttttt taacttaact cttaattctt tattttcttt taaatagttt
     5221 aacacgtctt tttctttaaa taatttagct ttttctaggt ctattctctc ttctaaagct
     5281 tcaataaaat tattcaaata tcttttagta acatcaaata gcttagaatc ttgctttaaa
     5341 cgcccaaatt cttgtggttt taaaaatatt cccaaatttt catatttcaa aggtttatca
     5401 aaaaattctt tagtaaag
//
LOCUS       DAPIWJ010000094         5404 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.096, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000094 DAPIWJ010000000
VERSION     DAPIWJ010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5404)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5404)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5404
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.096"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            64..1314
                     /locus_tag="RJ259_001485"
     CDS             64..1314
                     /locus_tag="RJ259_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HDV7367166.1"
                     /translation="MFVKNVNFYYRQILEKFENSYFAEDLTKVIIGIDCDYLDANELS
                     FSEFKAKYYEALSKNKICDFAGFFGVFSANFVSLFEKIPLSSKKNYDFPLFLFANAKA
                     YLIYEKNSKMFFKFGASKYFEYLKDDIEPMKKKQKNDFEILNSLEDEKNDFLKMCEKA
                     KEYLLSGDIFQVVLSKQLCIKHQVNAFDYYESLSALNPSAYMFYFPSKYGVVLGSSPE
                     FLLKIKKREIYLAPIAGTRNLENNCDLLALEKDLLSDEKELSEHKMLVDLARNDASKF
                     GTQTRVENLFSIIKNKFVMHIVSEVYANMKEDASIFDVIEAVFPAGTLSGAPKIRALE
                     ITSELEDCDRGIYGGAVGFLNFNEDITLAILIRCAFFTQDKAYLASGAGIVLQSESQK
                     EYAEICAKRKALLVAFENLKKENQ"
     gene            1311..2912
                     /gene="trpD"
                     /locus_tag="RJ259_001486"
     CDS             1311..2912
                     /gene="trpD"
                     /locus_tag="RJ259_001486"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HDV7367167.1"
                     /translation="MILLIDNYDSFVFNVKSMLEQLSNDEILVRRNDAISLSEIKNLN
                     PTHIILSPGPKHPSQSGICLEIFKARLNIPVLGICLGHQALALAFDSLVVKMQEPMHA
                     KNSLIKQCRENELFSNLPSNFSVMRYHSLEVKQLSDELEILALDEKGVIMALGHKNLP
                     YYGVQFHPESYFSEYGLQLFSNFLKQDIKKPQKQENPLSFYLQKMSENHFLQSDDFEQ
                     ICKIIMSKDYEILQVVALLILITEKSLNEKSLSAFVRQILRYSQTFSDESEMIDICGT
                     GGDGFKSINVSTTSAFILAALGVKVAKHGNRAISSSSGSTDVLEALNITTPNTLESVL
                     KQLNNQGLSFLHAPFFHPLVGELKEIRSRLGVRTVFNVLGPLLHPNLKLKYQLMGNYH
                     APVHRLLIEVLKNLGRKKALVVRGNDGMDELSICDESKIYELCEGEILEYSICPEQFG
                     FKRAFHSEIIGSSAYDNAKDLKDILSGRMQGAKFDLVVLNAMFALYTANKASSPLVAK
                     DMILEAIYSGKVIEYFKEYQAYAKA"
     gene            2899..3498
                     /locus_tag="RJ259_001487"
     CDS             2899..3498
                     /locus_tag="RJ259_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HDV7367168.1"
                     /translation="MLKLKICGIKDEKNAKDLAFLNIDFFGLIFAKSPRRVSLEQARN
                     LSAIFHEKDKKVVGVFVDENLEQILRCIKEAKLDGIQIYRTITKEEFEILKVQNVFVW
                     QVISVENSLDLKSEIFANLVLFDAKGILKGGNGISFDWTLLGSYTKDFILAGGIGLDN
                     VHKAVKTGAKILDLNSKLEDEKGLKDINKIKQILKELKK"
     gene            3495..4673
                     /gene="trpB"
                     /locus_tag="RJ259_001488"
     CDS             3495..4673
                     /gene="trpB"
                     /locus_tag="RJ259_001488"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HDV7367169.1"
                     /translation="MKKAYYGDFGGQFLPESAMFALNELEGAFLKFSKDKLFKKELNE
                     LLKTYVGRPTPLYFARNLSKKYQHEIYLKREDLNHTGAHKINNAIAQALLAKKMGKKK
                     IIAETGAGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHAVQSGL
                     KTLKEATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNK
                     KVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKGKTGIIH
                     GMKTKVLQDDLGNILPVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKL
                     LCKEEGIIAAIESSHALAFLEKLCPTLKKKSVIVVNLSGRGDKDMQMIRDYKKGVIYG
                     "
     gene            4666..>5404
                     /locus_tag="RJ259_001489"
     CDS             4666..>5404
                     /locus_tag="RJ259_001489"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HDV7367170.1"
                     /translation="MVDFRKFYKENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILEL
                     GVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTKKALVFMVYYNLIFSYGL
                     EKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKH
                     AKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVA
                     DGVIVGTSIVKCFKQGNLDIIMKDIEEI"
BASE COUNT         1900 a          596 c         1055 g         1853 t
ORIGIN      
        1 ttctttttat ctaaattttt tctttaatat tattttaatt tattttttaa aaaaaggttt
       61 attatgtttg ttaaaaatgt aaatttttat tacagacaaa tccttgaaaa atttgaaaat
      121 tcttattttg cagaggattt gactaaggta attataggga ttgattgtga ttatttagat
      181 gctaatgaat tatcctttag cgagtttaag gcaaaatatt atgaagcttt aagcaagaat
      241 aaaatttgcg actttgctgg attttttgga gtttttagtg caaattttgt atctttgttt
      301 gaaaaaattc cactttcttc taagaaaaat tatgattttc ctttattttt atttgccaat
      361 gctaaggctt atttgattta tgagaaaaat agcaagatgt tttttaaatt tggtgcttca
      421 aaatattttg aatatttaaa agatgatatt gaaccaatga aaaagaaaca aaaaaatgat
      481 tttgaaattt taaattcttt agaagatgaa aaaaatgatt ttttaaaaat gtgcgaaaaa
      541 gccaaagaat atcttttaag tggagatatt tttcaagtgg tcttaagtaa gcaactttgt
      601 atcaaacatc aagtaaatgc ttttgattat tatgagagtt taagtgcttt aaatccaagc
      661 gcttatatgt tttattttcc aagtaaatat ggtgttgttt tgggttcttc tccagagttt
      721 ttattgaaaa ttaaaaaaag agagatttat ttagccccta ttgctggaac tagaaatttg
      781 gaaaataact gtgatctttt agctttagaa aaagatcttt taagcgatga aaaagaactt
      841 agtgaacata agatgcttgt agatttagca agaaatgatg cttctaaatt tggcactcaa
      901 acaagagtgg aaaatctttt ttctattatt aaaaataaat ttgtaatgca catagtgagt
      961 gaagtgtatg ccaatatgaa agaagatgcg agtatttttg atgtgattga agcagttttt
     1021 ccagcgggaa ctttaagcgg agctcctaaa ataagagctt tagagatcac tagcgagctt
     1081 gaagattgcg atcgtggaat ttatggtggt gcggtaggat ttttaaattt taacgaagac
     1141 ataactttag cgattttaat ccgttgcgct ttttttactc aagataaggc ttatttggca
     1201 agtggggcgg gtattgtttt gcaaagtgag agtcaaaaag aatatgcaga aatttgtgct
     1261 aaacgcaagg cgcttttggt agcttttgaa aatttaaaaa aggaaaatca atgatacttt
     1321 taattgataa ttatgattct tttgttttta atgttaaaag catgttagag caactcagca
     1381 atgatgaaat tttagtaaga agaaatgatg caatttctct gagtgaaatt aaaaatttaa
     1441 atcctactca tattatttta agtcctggtc caaagcatcc aagtcaaagt gggatttgtc
     1501 ttgaaatttt taaagcaagg cttaatatcc ctgttttggg catttgctta ggacatcaag
     1561 ctttagcttt agcttttgat tctttagtgg ttaagatgca agagcctatg catgcaaaaa
     1621 attctttgat aaaacagtgc agggaaaatg aattattttc taatttgcct tcaaatttta
     1681 gtgtaatgcg ttatcattct ttagaggtta aacagcttag tgatgagctt gaaattttag
     1741 cccttgatga aaagggtgtg attatggctt tgggacataa aaatttacct tattatggtg
     1801 tgcaatttca tcctgaaagc tattttagtg aatatggctt gcaacttttt tctaattttt
     1861 taaaacaaga tataaaaaaa ccacaaaaac aagaaaatcc tttaagtttt tatttgcaaa
     1921 aaatgagtga aaatcatttt ttacaaagcg atgattttga gcaaatttgt aagattatta
     1981 tgtctaaaga ttatgaaatt ttacaagtag tggctttgtt gattttaatc actgaaaagt
     2041 ccttaaatga aaaatcttta agtgcttttg taagacaaat tttaagatat tctcaaactt
     2101 ttagtgatga gagtgagatg attgatattt gtggaacagg tggagatggt tttaaaagta
     2161 tcaatgtttc tacgactagt gcttttattt tagcagcttt aggagtaaaa gtagccaaac
     2221 acggaaatcg tgccatttca agttctagcg gaagtacaga tgtgttagaa gctttaaata
     2281 taactactcc aaacacttta gaatcagttt taaaacaact aaataatcaa gggcttagtt
     2341 ttttacatgc tccatttttt catcctttag taggagaact taaagagatc agatcaagac
     2401 ttggagtaag aacggttttt aatgttttag gtcctttatt gcaccctaat ttaaagttaa
     2461 aatatcaact tatgggaaat tatcacgcac ctgtgcatag gcttttgata gaggttttaa
     2521 aaaatttagg acgcaaaaaa gctttagtgg taagaggaaa tgatggtatg gatgagctta
     2581 gtatttgcga tgaaagtaaa atttatgagc tttgtgaagg agaaatttta gagtattcta
     2641 tctgtcctga acaatttggt tttaaaagag cttttcatag tgaaatcata ggatctagtg
     2701 catatgacaa cgctaaagat ttaaaagata ttttaagcgg tagaatgcaa ggggcaaaat
     2761 ttgatttggt agttttaaat gctatgtttg cactttatac agccaataaa gcaagttcgc
     2821 ctttagtggc taaagatatg attttagaag ccatttattc aggtaaggtt atagaatatt
     2881 ttaaggagta tcaagcttat gctaaagctt aaaatttgtg gtattaaaga tgaaaaaaat
     2941 gccaaagatt tagctttttt aaatattgat ttttttggac ttatttttgc taaaagtcca
     3001 agaagagtga gtttagaaca agcaagaaat ttaagtgcaa tttttcatga aaaagataaa
     3061 aaagttgtcg gtgtttttgt agatgaaaat ttggaacaaa ttttaagatg tattaaagaa
     3121 gctaagcttg atgggataca aatttatcgc actattacca aagaagaatt tgaaatttta
     3181 aaggtgcaaa atgtttttgt ttggcaggtg attagtgtgg aaaatagttt agatttaaaa
     3241 agtgaaattt ttgctaattt agtacttttt gatgctaagg gaattttaaa gggcggtaat
     3301 ggaataagtt ttgattggac tttattaggt tcttatacta aagattttat attagccgga
     3361 ggcataggtt tggataatgt tcataaggct gtaaaaacgg gagctaaaat tttagatctt
     3421 aattcaaaac ttgaagatga aaaaggctta aaagatatca acaaaataaa acaaatttta
     3481 aaggagttga aaaaatgaaa aaagcgtatt atggggattt tggtgggcag tttttgcctg
     3541 aaagtgcaat gtttgcttta aatgagctag aaggtgcttt tttgaaattt tctaaagata
     3601 aactctttaa aaaagaatta aacgagcttt taaaaactta tgtagggcgt cctactccac
     3661 tttattttgc tagaaattta agcaaaaaat atcagcatga aatttattta aaacgcgagg
     3721 atttaaatca taccggagca cataaaatca ataatgccat cgctcaagcc cttttagcaa
     3781 aaaaaatggg aaagaaaaaa atcatagcag aaacaggagc aggtcaacac gggcttgcaa
     3841 cagccactgc agcagcactt ttaggacttg aatgtgaaat ttatatgggg gcaaccgatg
     3901 tgcaaagaca ggctttaaat gtttataaaa tggagctttt gggtgctaaa attcatgcag
     3961 tacaaagtgg gcttaaaact ctaaaagaag ctactactgc ggctattcaa gcttgggttg
     4021 gagatattaa aaatattttt tatgtggttg gaagtgcggt aggtccttat ccttatccta
     4081 aaatggtaat gcattttcaa agtattatag gaaaagaatg caaaatgcaa cttcaaaaac
     4141 tcaataaaaa agtagattat attatcgcag ctgttggggg tggaagcaat gcagctggga
     4201 ttttttatga ttttatcaaa gatgaaaatg ttaaacttat aggtattgaa gcaggggggc
     4261 ttggcattga tacgccttat catgcagcga ctttaaataa gggaaaaaca ggcattattc
     4321 acggtatgaa aaccaaggtt ttacaagatg atttaggcaa tatcttgcct gtacatagtg
     4381 tttctgcagg gcttgattat ccaggaattg gtcctttgca tgctttttta tttgaaagca
     4441 aaagagcgca atatcatgct ataagtgatg aagaatgtat gcaggcttta aaattacttt
     4501 gtaaagaaga aggtattatt gcagcgattg aaagttcgca tgctttggca tttttagaaa
     4561 aactttgtcc aactttaaaa aagaaaagcg tgatagtagt aaatctttca ggcaggggag
     4621 ataaagatat gcaaatgatt agagattata aaaaaggggt gatttatggt tgattttaga
     4681 aaattttata aagaaaatgc aaatgtggct tatacggttt taggttatcc aaatcttcaa
     4741 acaagtgaag cttttttgca aagattggat caaagtccta ttgatatttt agaacttggt
     4801 gttgcttata gtgatcctat tgccgatggt gagattattg cagatgcggc aaaaatagct
     4861 cttgatcaag gcgtggatat tcatagtgtt tttgagcttt tagctaggat aaaaactaaa
     4921 aaagctttgg tttttatggt ttattataat ttaatttttt cttatggctt ggaaaaattt
     4981 gtgaaaaaag caaaatcttt agggatttgt gctttgattg tgcctgaatt gagttttgaa
     5041 gaaagtgatg atttgattaa agagtgtgaa agatataata tagctttaat tacacttgta
     5101 agtgttacaa cccctaaaga aagggttaaa aagttagtaa aacatgctaa aggttttatt
     5161 tatttattag caagcatagg tattacaggt acgaaaagtg tcgaagaagc aatcttacaa
     5221 gataaagtaa aagaaatcag atcttttaca aatttgccta tttttgtagg ctttggcatt
     5281 caaaataatc aagatgtaaa aagaatgaga aaagttgctg acggagtgat tgtgggaact
     5341 agcatagtaa agtgttttaa acaaggaaat ttggatataa taatgaaaga tattgaagaa
     5401 attt
//
LOCUS       DAPIWJ010000095         5322 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.097, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000095 DAPIWJ010000000
VERSION     DAPIWJ010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5322)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5322)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5322
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.097"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            13..2001
                     /locus_tag="RJ259_001490"
     CDS             13..2001
                     /locus_tag="RJ259_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7367171.1"
                     /translation="MNIAEFHFSNGNKTQAQIEDSNEKIFKIFLEKRLKNYNQYIKAT
                     KDIIKECKRLNIVNRDDFDTFQINSIEVLTNLLFELKNGLLREYDLKSSNRCPHACIK
                     SHYLEFVKYVNAYKNYVSKDMVKYLKTRGGEKEFKVEIKNQKIEIIASINNIRKYSSN
                     RFLEYSVLGKNEVESYAKPLFEDILSNSNLSAIKQSENEKILIENQNIPLNQILYGPP
                     GTGKTYHTIDKALEILGENLENRDEKKAKFDEYVKNGQIVFTTFHQSYGYEEFVEGIK
                     PRIDSKENSKEVEYEIKDGIFKELCKKALDNYKVSLLTQEEFVKSEDLENKIEIFLDE
                     LVDQQKFIEKIQSGGFKLEEYNEKYRIITDDTNANLYLNLEIFKTLLENKDKIINGRS
                     IKQILNNKHRRQIDSYYFQLVKLFKEREQDYKVDNNPSEKPELKPYIIIIDEINRGNV
                     SKIFGELITLIEPSKRIGEKEELKVTLPYSGEKFGVPKNVYIIGTMNTADRSITSLDT
                     ALRRRFEFIEMMPDVSKLSMDCEGINLQELLKAINTRIEYLLDREKTIGHAFFVSVEN
                     LEDLKKVFQNKIIPLLQEYFYNDYALINEVLNDNGMIFEDKKDDKYLQKIKNLDSVNS
                     ERSIYNIASFDDKIWDKIEIYQAIYNDEIANKLKNENE"
     gene            1994..3325
                     /locus_tag="RJ259_001491"
     CDS             1994..3325
                     /locus_tag="RJ259_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="McrC family protein"
                     /protein_id="HDV7367172.1"
                     /translation="MNSTFSIIEYQAFSKEDLKEIFKEKAEGFYKELEDFAKNNENLL
                     GFKNKNSLKAKNYVGIIQTKSGVLEILPKCTNLDSYKKEDSSSNHDKEKLRRCYELDN
                     ISKNNDFYEKDFKFNPKNLLINMLKTLKNSPFKKSQISSLQSSKIPLFEVFITMFLDE
                     FDSVYKKGLMRSYLSCEENRAFLKGKLLFNEHIKQNLIHKERFFTSNDEFVLDIAPNR
                     LIKSTLNFLKSKTSLNKFRLIKAMQMLDEVEFSKNYEKDFSYKISRHFDYYENLLLWC
                     KIFLKNESFMPYHGKNEAFALLFPMEKIFEDYVAYMLKKVNSTQDIKVQNNGKYLISK
                     NDENCFMLKPDLYIKNKMILDTKWKIPNDSEDEKKQGIAQSDLYQMFAYACKFKIYDI
                     KLVYPLCEKTQDLQRKIAEKFFVFKASEHLHFKEQGQKDIKVQVFFAPLPF"
     gene            complement(3314..4117)
                     /locus_tag="RJ259_001492"
     CDS             complement(3314..4117)
                     /locus_tag="RJ259_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDV7367173.1"
                     /translation="MLEILNFTFFQNALLGAILVSIACGIIGTLVMINRLFSMAGGIT
                     HGAFGGIGIAFYFSLPILLSTGIFTLFLAFLVAFLAKRYEHRSDSIIAVIWAFGMAVG
                     IILIDLSPSYNTDLMAYLFGSILAVGTQDLWLMALVDSVVVLLIFLFYRQFEALSFDA
                     EFAKVRGINTSFFHYLLIALMAFCIVISIRLVGLILVMALLSIPSFIAENFTKRLGFI
                     MILASFLSMIFCILGLILSYYLNLSSGACIIAIACFGFLVHLIGKFLKR"
     gene            complement(4110..4964)
                     /locus_tag="RJ259_001493"
     CDS             complement(4110..4964)
                     /locus_tag="RJ259_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HDV7367174.1"
                     /translation="MLFFEISNLNYAYDNEIILKNINLSYDNKDFLSIIGPNGAGKST
                     LVKLILGLLKSKNEIHFKALQRKEIGYVPQHTLANPNFCPRVLEVVLMGLVSKKIFGF
                     YGKKDKEKAMQALKSVGMEKFWNKTIDSLSGGQRQRVFIARALASECKMLILDEPTAS
                     VDNKSAIQIFELLSSLHQKGMGILLICHDINLVLAYSDKIAHLNKELFLHTNTKEKEK
                     SSFLKHLYENHSHFCDVEMSLNTCFCDEKNCDSKKLCEQEFTRRNLKKTEFKKENFCL
                     KFSKENNA"
     gene            complement(4977..>5322)
                     /locus_tag="RJ259_001494"
     CDS             complement(4977..>5322)
                     /locus_tag="RJ259_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HDV7367175.1"
                     /translation="DSLNLQIASKLEKLKNREFVVYHPSWTYFAKRYNLTQIPVEILG
                     KEPKSKDLQKLITLMKDKNLKVIFVQNGFPENAAKTLAKECDAKIYKIDHLSYDWENE
                     LLKTADAFSHNL"
BASE COUNT         2135 a          663 c          802 g         1722 t
ORIGIN      
        1 aaggaaaata gtatgaatat tgctgaattt catttttcaa atggaaataa aacacaagca
       61 caaatagaag attcaaatga gaaaattttt aagatatttt tggaaaaaag actaaaaaat
      121 tacaatcaat atatcaaagc tacaaaagac ataattaaag aatgtaaaag attaaatatt
      181 gtcaatagag atgattttga tacgtttcaa ataaattcta tagaagtttt aacaaatttg
      241 ttatttgaat taaaaaatgg gctattgcga gaatatgatc ttaagagcag caatcgatgt
      301 ccgcatgctt gtattaaatc tcattatttg gaatttgtaa aatatgtcaa tgcttataaa
      361 aattatgttt caaaagatat ggttaagtat ttgaagacaa gaggtggtga gaaagaattt
      421 aaagtagaaa taaaaaatca aaagatagaa attattgcta gtattaataa tattagaaaa
      481 tactcttcga atagattttt ggaatatagt gttttaggta aaaatgaagt tgagtcatat
      541 gctaaaccat tatttgaaga tatattaagc aactcaaatc ttagtgcgat taagcaaagc
      601 gaaaatgaaa agatactaat tgaaaatcaa aatatacctt taaatcaaat tctttatggg
      661 cctccaggga caggaaaaac ttatcatact atagataaag ctttagaaat tttaggtgaa
      721 aatttagaaa acagagatga gaaaaaagca aaatttgatg agtatgtaaa aaatggacaa
      781 atagttttta ccacttttca tcaaagctat ggatatgaag aatttgtaga aggcataaag
      841 cctcgcatag atagcaaaga aaattctaag gaagtagaat acgaaataaa agacggaatt
      901 tttaaagaac tttgtaaaaa agctttggat aattacaaag tatctttatt aacacaagaa
      961 gaatttgtaa agagtgaaga tttagaaaac aaaatagaaa tttttttaga tgaattagta
     1021 gatcaacaaa aatttataga aaaaattcaa agtggtggat ttaaattaga agaatataat
     1081 gaaaaatata gaattatcac agatgatact aatgcaaatt tgtatttaaa tttagaaatt
     1141 tttaaaacgc ttttggaaaa taaagataag attataaacg gaagaagcat taagcaaatt
     1201 ttaaataata aacatagaag acaaatcgat agttactatt ttcagctagt taaattgttt
     1261 aaagaacgag aacaagatta taaagtagat aataatccta gtgaaaagcc agaattaaaa
     1321 ccttatataa tcatcatcga tgaaatcaat cgtggtaatg taagtaagat ttttggtgag
     1381 cttataacct tgatagaacc tagtaaaagg ataggtgaaa aagaagagtt aaaagtgact
     1441 ttgccttata gcggtgaaaa atttggagtg cctaaaaatg tttatatcat aggcactatg
     1501 aatacagccg atagaagcat aacttctctt gatacagctt taagaagaag atttgaattt
     1561 attgagatga tgcctgatgt gagcaaatta tctatggatt gcgaaggtat taatttacaa
     1621 gaattattaa aagctataaa cactcgtata gaatatttac tagatagaga aaaaaccata
     1681 ggtcatgcat tttttgtaag tgttgaaaat ttagaagatt taaaaaaagt ttttcaaaat
     1741 aaaattattc cgcttttgca agagtatttt tataatgatt atgctttgat taatgaggtt
     1801 ttaaatgata atggtatgat ttttgaagat aaaaaagatg ataaatatct tcaaaaaata
     1861 aaaaatctag atagtgttaa tagcgagaga agtatttata atattgcttc atttgatgat
     1921 aaaatttggg ataaaataga aatatatcaa gcaatttata atgatgaaat agcaaataaa
     1981 ttaaaaaacg aaaatgaata gcactttttc catcatcgaa taccaagctt tttctaaaga
     2041 agatttaaaa gaaattttca aagaaaaggc cgaagggttt tataaagagc tagaagactt
     2101 tgcaaaaaat aatgaaaatc ttctaggctt taaaaacaaa aattccttaa aagctaaaaa
     2161 ttatgtcggc attatacaga ctaaaagcgg ggttttggag attttgccaa aatgcacgaa
     2221 tttagatagt tataaaaaag aagatagttc ttcaaatcat gacaaagaaa aactaagaag
     2281 atgttatgaa ttagacaata tttctaaaaa taatgatttt tatgaaaaag attttaaatt
     2341 taatcctaaa aatcttttga taaatatgct aaaaacctta aaaaactccc cctttaaaaa
     2401 atcacaaatt tcatctttgc aaagttctaa aattccttta tttgaagtgt ttatcactat
     2461 gtttttagat gaatttgata gcgtgtataa aaaaggcttg atgagatctt atctaagttg
     2521 cgaagaaaat agggcttttt taaagggaaa attactattt aacgagcata tcaagcaaaa
     2581 tttgatacac aaagaaagat tttttacaag caacgatgag tttgttttag atatagcacc
     2641 caatcgtttg ataaaatcaa cgctaaattt tttaaaatca aaaacaagtt tgaataaatt
     2701 tagacttata aaagccatgc aaatgcttga tgaggtagaa ttttctaaaa attatgaaaa
     2761 agattttagc tataaaattt caagacattt tgattattat gaaaacttgc ttttgtggtg
     2821 taaaattttc ttaaaaaatg aaagttttat gccttatcat ggtaaaaatg aagcttttgc
     2881 tttgcttttt cctatggaga aaatttttga agattatgta gcttatatgc taaaaaaagt
     2941 aaattcaact caagatatta aagtccaaaa caatggaaag tatttaatct caaaaaatga
     3001 tgaaaattgt ttcatgttaa agcctgattt atatataaaa aataaaatga tcttagatac
     3061 caaatggaaa attccaaatg atagtgaaga tgagaaaaaa cagggtatag cacaaagcga
     3121 tttgtatcaa atgtttgctt atgcttgcaa atttaaaatt tatgatatta aacttgtgta
     3181 tcctttatgt gaaaaaactc aagatttaca aagaaaaatc gcagaaaaat tttttgtttt
     3241 taaggcgagc gaacatttgc attttaaaga acaagggcaa aaagatataa aagtccaagt
     3301 attttttgca cctttacctt tttaaaaatt tgcctatcaa atgcactaaa aaaccaaagc
     3361 aagctatagc tatgatgcaa gcaccgcttg agagattaag ataatagcta agtataagtc
     3421 ctaaaataca aaaaatcatg cttaaaaaac ttgccaaaat catgataaag ccaagtcttt
     3481 tagtaaaatt ttcagcaata aagcttggga tactaagtaa agccataact aaaataagcc
     3541 ctacaaggcg tatagaaata actatacaaa aagccataag ggcgattaaa agataatgaa
     3601 aaaaacttgt attgatacca cgaacttttg caaattccgc atcaaagctt aatgcttcaa
     3661 attgtctata aaataaaaag atcaaaagca ccaccacgct atcaaccaaa gccataagcc
     3721 ataaatcttg tgttcctaca gccaaaatgc tcccaaaaag ataagccatt aaatctgtgt
     3781 tataactagg gcttaaatcg attaaaataa tcccaacagc cattccaaaa gcccagatta
     3841 cagcgataat gctatcactt ctgtgttcat agcgtttagc taaaaaagct actaaaaaag
     3901 ccaaaaataa agtaaatatt cccgtgctta ataaaatagg caaagagaaa taaaaagcta
     3961 tacctatacc accaaaagcc ccatgtgtta tacctccagc catagaaaaa aggcgattta
     4021 tcatcaccaa agtacctatg atcccacaag ctatactgac taaaatcgct cctagtaaag
     4081 cgttttgaaa aaaggtgaaa tttaaaattt caagcattat tttcctttga aaattttaaa
     4141 caaaaatttt cttttttaaa ttctgttttt ttcaaatttc ttcttgtaaa ttcttgttcg
     4201 catagttttt tgctatcgca atttttttca tcgcaaaaac aagtatttaa actcatttct
     4261 acatcacaaa aatgagagtg attttcgtat aaatgtttta aaaatgaact tttttctttt
     4321 tctttagtgt tagtatgcaa gaaaagttct ttgtttaaat gtgcaatttt atcgctataa
     4381 gctaatacaa ggttgatatc gtgacaaatg agtaaaattc ccatgccttt ttggtgcaaa
     4441 gagcttagaa gttcaaaaat ttgtatagca gacttgttat caacgcttgc ggtaggttca
     4501 tctaaaataa gcattttgca ttcactagct aaggctcttg cgataaaaac acgttgcctt
     4561 tgtcctccac ttagagaatc aatggttttg ttccaaaatt tttccattcc tacacttttt
     4621 aaagcttgca tagctttttc tttatctttt ttcccataaa aaccaaaaat ttttttactt
     4681 acaagtccca taagaacgac ttcaagtact cttgggcaaa aattaggatt ggctagagtg
     4741 tgttgaggaa catagcctat ttcttttctt tgaagagctt tgaaatggat ttcatttttg
     4801 gattttaaaa gtcctaagat aagttttacg agtgttgatt ttcctgcacc atttggacct
     4861 atgatagaga gaaagtcttt attgtcatag ctaagattga tgttttttaa gatgatttca
     4921 ttatcataag cgtagtttag attagaaatt tcaaaaaaaa gcatcaaaaa acctgattat
     4981 aaattatgag aaaaggcatc agcagttttt aaaagctcat tttcccaatc ataagataaa
     5041 tgatctattt tgtaaatttt tgcatcacat tctttagcaa gtgtttttgc tgcattttca
     5101 gggaaaccat tttgaacaaa aatgactttt aaatttttat ctttcattag agtgataagt
     5161 ttttgcaaat ctttgctttt tggttccttg cctaaaattt ctacaggaat ttgcgtaaga
     5221 ttatagcgtt ttgcaaaata tgtccaagaa ggatgataaa ctacaaattc tctatttttt
     5281 aatttttcta attttgaggc aatttgtaaa tttaaactat ct
//
LOCUS       DAPIWJ010000096         5222 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.098, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000096 DAPIWJ010000000
VERSION     DAPIWJ010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5222)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5222)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5222
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.098"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            37..1068
                     /gene="pseI"
                     /locus_tag="RJ259_001495"
     CDS             37..1068
                     /gene="pseI"
                     /locus_tag="RJ259_001495"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HDV7367176.1"
                     /translation="MQIGNFNTDKKVFIIAELSANHTGSLEMALQSIKAAKKAGADAI
                     KIQTYTPDSLTLNSDKEDFIIKGGLWDKRKLYELYQSAKTPYEWHSQIFETAQNEGIL
                     CFSSPFAKEDVEFLKRFDPIAYKIASFEANDENFVRLIAKEKKPTIVSTGIATEEELF
                     KICEIFKEEKNPDLIFLKCTSAYPAAIEDMNLKGIVSLKEKFNVEVGLSDHSFGFLAP
                     VMAVALGARVIEKHFMLDKNIESEDSKFSLDFDEFKAMVDAVRQAESALGDDKLDLDE
                     KALKNRVFARSLYASKDIKKGEIFSEENVKSVRPSFGLHPKFYQELLGKKASKDIKFG
                     DALKQGDFQ"
     gene            1065..3017
                     /locus_tag="RJ259_001496"
     CDS             1065..3017
                     /locus_tag="RJ259_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7367177.1"
                     /translation="MTFTPTQKELFNKNIEALGNILLKESLKEIKSSKFELILGKDNL
                     DINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGVLFK
                     ALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARLMILENDKLQTQDYNELCSF
                     KPFFQFSRIYFLELMSHYYERFHEDVLELNKKLVQYFKDSIISHGNDSTDTLQGIEQF
                     VYNLPQMITHPSYKELLSKRKNLSDTAIIVSTGPSLTKQLPLLKKYANTATIFCADSA
                     YPILAKHDIKPDYVLSLERIPLTSEFFNHDFGEFDRDVLFVCVSWVYPQTIKYLQKNN
                     RNFMLISRPSDFIKNINFHQYGYVGYGPSVAHMAYEFATHLNYKNIIFIGQDLAYAKD
                     GFSHTKDYSNLDKHEGHFQRDKGKFQCLAYGGNGKVESSGIWTMFRFSLQNTISRNII
                     STTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYK
                     VYQSIKHCRDFNKILSNDFENIQSIYLSLNEKEEDINLAIEKIDEFKNKLEDIKQMQD
                     LYDILQSLFIQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENA
                     LIKNILPLEEKLKERKLDKWMERVRR"
     gene            3014..3985
                     /gene="legB"
                     /locus_tag="RJ259_001497"
     CDS             3014..3985
                     /gene="legB"
                     /locus_tag="RJ259_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,6-dehydratase LegB"
                     /protein_id="HDV7367178.1"
                     /translation="MRNILVTGADGFIGSHLCESLVKKGFKVRALSQYNSFNFWGHLE
                     KSPFLKDMEVISGDLRDSFFCEKITKNIDAIFHLGALIAIPYSYAAPQSYVDTNVNGT
                     LNMLEAAKKNKISHFIHTSTSEVYGTAFYVPIDEKHPLQPQSPYSASKIAADMMALSY
                     YNSFNLNVNIARPFNTYGPRQSARAIIPTIITQILSGAKEIKLGDLSPKRDLNFVLDT
                     CEGFISLLNLKHFGEVYNIGSGVEYSMQEVLDLIQKILDSKVKIIQDEQRLRPKNSEV
                     FRLCCDANKLKKATNWQSKISLEEGLRQSIEYFKENLENYKSELYNV"
     gene            3978..5120
                     /gene="legC"
                     /locus_tag="RJ259_001498"
     CDS             3978..5120
                     /gene="legC"
                     /locus_tag="RJ259_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_052853885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase LegC"
                     /protein_id="HDV7367179.1"
                     /translation="MFEKEISFIKSLFNKENIALHEPCFIGNEKKYLLECIDSGFVSS
                     VGEFVTRFEEALKEKTKARFVIATNTGTAALHIALLANGIDENCEVITQSISFVATAN
                     AIAYTGAKPVFLDIDENTLSLSPKALEHFLENQTYQKNGFSYNKTTHKPIKACVIMHT
                     FGLSAHIKALKELCEKYRILLIEDAAEALGSTYENKALGTFGKCGILSFNGNKIITGG
                     CGGAILSDDENLAKLARHLSTTAKIPHPYEYDHDMIAYNYRLCNVNAAILLAGLENLE
                     PFLENKRELAKIYKDFFKNHDKCEFIDEKSNEKSNFWLNTLLFKNENLRNIFLEECLK
                     NNIFVRPVWKSLPSLKAFQDCQSDELINTKNLEKRLVNLPSSVRRK"
BASE COUNT         1971 a          756 c          859 g         1636 t
ORIGIN      
        1 catttttagt aggaaattta ccaaagaaag aaatacatgc aaataggaaa ttttaacacc
       61 gataaaaaag tttttatcat agcagaactt agtgccaatc acacaggaag tcttgaaatg
      121 gcacttcaaa gtataaaagc tgccaaaaaa gcaggtgctg atgcgataaa aatccaaact
      181 tacactccag atagcctcac actaaatagc gataaagaag attttatcat caaaggagga
      241 ctttgggaca aaagaaaact ttacgagctt tatcaaagtg caaaaacccc ttatgaatgg
      301 cattctcaaa tctttgaaac cgcacaaaat gaaggcatac tttgtttttc aagtcccttt
      361 gctaaagaag atgtagaatt tcttaaacgc tttgatccta tagcctataa aatcgcttct
      421 tttgaagcca atgatgaaaa tttcgtgcgt ttaatcgcca aagaaaaaaa acctactatc
      481 gtttcaacag gcattgctac agaagaagaa ctttttaaaa tctgtgaaat ttttaaagaa
      541 gaaaaaaatc ctgacttgat ctttttaaaa tgcacttcag cttatcccgc tgccatagaa
      601 gatatgaatt taaaaggtat agtaagttta aaagaaaaat ttaatgttga agtgggacta
      661 agtgatcata gctttggttt tttagcaccc gttatggcag tagcacttgg agctagagtg
      721 atagaaaagc attttatgtt agataaaaat atagaaagtg aagacagtaa atttagtctt
      781 gattttgatg aatttaaagc tatggtagat gcagtaagac aagctgaaag tgctttaggc
      841 gatgataagt tagacttaga tgaaaaagct cttaaaaacc gtgtttttgc aagaagttta
      901 tatgcaagta aggatatcaa aaaaggtgaa attttcagcg aagaaaatgt aaaatccgtg
      961 cgtccctctt ttgggttgca tcctaaattt tatcaagaac ttttaggaaa aaaagccagt
     1021 aaagatataa aatttggcga tgctttaaaa caaggagatt tccaatgacc ttcaccccta
     1081 cccaaaaaga actctttaac aaaaacattg aggctttagg taatattctt ttaaaagaaa
     1141 gtttaaaaga aatcaagtct agtaaatttg aacttatctt aggtaaagat aatctagata
     1201 tcaatttaaa agatacaagt ataaaaaata atgggggggg gtataatgaa aatttacttt
     1261 atcaagatcc cattaaagaa ttgcaaacta tgctaaacac ttacaacgac aaatacctac
     1321 tttatcctgt attgtatttt tatggttttg gaaatggagt tttatttaaa gctttattac
     1381 aaaataaaaa tcatcagcat attgttgttt ttgaaaaaga tatagaaatc atttggatca
     1441 tgtttcatat cttagatttt tcaaatgaat tgcaaagtgc aagattgatg attttggaaa
     1501 atgataaatt acaaactcaa gattataatg aactttgttc ttttaaacct ttctttcaat
     1561 tttctagaat ttatttttta gaattaatga gtcattatta tgaaagattt catgaagatg
     1621 ttttggagtt aaataaaaag ctagtacagt attttaaaga ttctattatt tctcatggta
     1681 atgattcaac agatactctt caaggcatag aacaatttgt ttataactta cctcaaatga
     1741 tcactcatcc tagttataaa gaattacttt ccaaaagaaa aaatttaagt gatacagcta
     1801 ttattgtttc tacaggacca tctcttacta aacaacttcc tttgttaaaa aaatatgcta
     1861 atacagctac aattttttgt gcggatagtg cttatcctat tttggctaaa catgatatca
     1921 agcctgatta tgtactttct ttagaaagga ttcctttaac ttctgaattt tttaatcatg
     1981 attttgggga atttgatagg gatgttttgt ttgtttgtgt aagttgggtc tatccacaaa
     2041 ctataaaata tcttcaaaaa aataatagaa atttcatgct tatttcaaga ccttctgatt
     2101 tcattaaaaa tattaatttt catcaatatg gctatgtagg ctatgggcca agcgttgcac
     2161 atatggctta tgaatttgca actcatctaa actataaaaa tatcattttc ataggacaag
     2221 atttagctta tgctaaagat ggattttctc ataccaaaga ttatagcaat cttgataaac
     2281 atgaaggaca ttttcaaaga gataagggaa aatttcaatg tctagcctat ggaggcaacg
     2341 gaaaggttga aagttcagga atttggacta tgtttagatt ctctttgcaa aataccattt
     2401 caagaaatat tatttcaacc acctacaact gcaccgaagg tggagcaagg atagaaggaa
     2461 ctatagaaaa acctttttta tgggcttgtg agaatttact tgataaagat ttaaataaac
     2521 cttttgaaaa attagaacct ttaagtttaa ataaacaaaa tgagttttta cttaaggctt
     2581 attataaagt ttatcaaagt attaagcatt gtagagattt taataaaatt ctaagtaatg
     2641 attttgaaaa tatacaaagt atatatttga gtttaaatga aaaagaagag gatatcaatt
     2701 tagctattga aaaaatagat gagtttaaaa acaaacttga agatataaaa caaatgcaag
     2761 atttgtatga tatcttgcaa tctttattca tacaatttga acttaatctt gctagaattt
     2821 atgttttaaa tcctaaaacc aaagaagatg cttttaataa aagtattctt tggataaaag
     2881 aacatttaga atttatggaa ttagtttatg gacatattaa agcacaagaa aatgctttga
     2941 ttaaaaatat acttccttta gaagaaaaac ttaaagaaag aaaattagat aaatggatgg
     3001 aaagggtgag aaggtgagaa atattttagt tacaggtgct gatggtttta taggttctca
     3061 tctttgtgaa agtttggtca aaaaaggttt taaagtcaga gctttaagcc aatataattc
     3121 ttttaatttt tggggacatt tagaaaaaag tcctttttta aaagacatgg aagttataag
     3181 cggggattta agagatagct ttttttgcga aaaaattacc aaaaacatag atgcgatctt
     3241 tcatcttggt gctttaatcg ccatccccta ctcctacgca gccccacaaa gctatgtgga
     3301 taccaatgtt aatggtactt taaatatgct cgaagcagct aaaaaaaaca agatttcaca
     3361 ttttatccac acctcaacaa gcgaagttta tggtacggcc ttttatgtgc ctatcgatga
     3421 aaaacaccct ttacaacctc aaagccctta ttctgcaagt aagatcgctg cagatatgat
     3481 ggcactaagt tattataatt cttttaattt aaatgtcaat attgcacgcc cttttaacac
     3541 ctatggccca agacaaagcg caagagccat catacctacc atcatcacac aaattttaag
     3601 cggagcaaag gaaatcaaac taggagattt aagccctaaa agggatttaa attttgtgct
     3661 agatacttgt gaaggtttta tctctctttt aaatttaaaa cattttggag aagtttataa
     3721 tataggctca ggagtggaat actccatgca agaagtactt gatctcatac aaaaaatttt
     3781 agattctaag gtaaaaatca tccaagatga gcaaagattg cgtcctaaaa atagcgaagt
     3841 ttttagactt tgttgcgatg caaacaagct taaaaaagct acaaattggc aaagcaaaat
     3901 aagtctagaa gaaggtttaa gacaaagtat agagtatttt aaagaaaatt tagaaaatta
     3961 taaaagtgaa ctttataatg tttgaaaaag aaatttcttt tataaaaagt cttttcaata
     4021 aagaaaatat cgccctacat gagccttgct ttataggcaa tgagaaaaaa tatctcttag
     4081 aatgtatcga tagcggtttt gtttcaagcg taggagaatt tgtaacgcgt tttgaagaag
     4141 ctttaaaaga aaaaaccaaa gcacgctttg tcatcgctac aaatacaggc acagcagccc
     4201 ttcatatcgc tttactagcc aatggtatcg atgaaaactg cgaagtcatc actcaaagca
     4261 taagctttgt cgccacggcc aatgctatcg cttacacagg cgcaaagccc gtttttttag
     4321 acatagatga aaacactcta agtttaagtc ctaaggcttt agagcatttt ttagaaaatc
     4381 aaacttatca aaaaaatggt tttagctata acaaaactac acataaaccc atcaaagctt
     4441 gtgttatcat gcataccttt ggtttaagcg ctcatatcaa agccctcaaa gagctttgtg
     4501 aaaaataccg cattctttta atcgaagatg ctgcagaagc cttaggaagc acttatgaaa
     4561 ataaggcctt aggcactttt ggaaaatgtg gaattttaag ctttaatggc aataaaatca
     4621 tcacaggcgg atgtggtgga gcgatactaa gcgatgatga aaatttagct aagcttgcaa
     4681 gacaccttag caccacagcc aaaatccccc atccttacga atacgatcat gacatgatag
     4741 cttataatta ccgtctttgt aatgtaaacg cagcgatctt gcttgcagga cttgaaaatt
     4801 tagaaccttt tttagaaaac aaaagagaac ttgctaaaat ttacaaggat ttttttaaaa
     4861 atcacgataa atgcgaattt atcgatgaaa aaagcaatga aaaaagcaat ttttggctca
     4921 ataccttgct ttttaaaaat gaaaatttaa gaaatatctt tttagaagaa tgcttgaaaa
     4981 ataatatttt tgttcgccct gtatggaaaa gcttaccaag tttaaaagct tttcaagatt
     5041 gtcaaagcga tgagcttata aataccaaaa atttagaaaa acgcttggtt aatttaccta
     5101 gcagtgtcag aagaaaataa acaatttatg ttaaaatgaa aactttttaa aatgggagcg
     5161 ttaatgaaaa aatatattag caatgaagaa atttcaaaca atttgggaag caatgaaaaa
     5221 at
//
LOCUS       DAPIWJ010000097         5093 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.099, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000097 DAPIWJ010000000
VERSION     DAPIWJ010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5093)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5093)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5093
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.099"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..505
                     /locus_tag="RJ259_001499"
     CDS             <1..505
                     /locus_tag="RJ259_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367180.1"
                     /translation="YTKNEKDKEYLLLTSCLHMKDDTKNIKVEQALNVLKNYIQEYQA
                     NINKDDNLLDFIYGTCDEIANTNNINPIELQNKIVLSIGIRLKAEEFMLSKVNLQNEI
                     TRNQTRNLYNLTKEQNAINDKQDFIIRKVLAITSDNIHINSFMYEPILDTSIEHLVKL
                     YRDIKKI"
     gene            complement(580..1281)
                     /locus_tag="RJ259_001500"
     CDS             complement(580..1281)
                     /locus_tag="RJ259_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HDV7367181.1"
                     /translation="MKTNNIFMALAIVLASLILAFGFNKALSDFKTLERSVSVKGLSQ
                     KEIEADTLILPIKFTRSNNNLTNLYEELEQDKENIIKFLEKQGIKEDEISYNSPNIID
                     RLSDPYSNDTQAAYRYIGTANLLIYTQNVKLGKSILENISSLAKFGIVTKIDDYDIEY
                     LYTKLNDIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQFSISNRDKNTPYI
                     KTIRVVSTIEYYLKD"
     gene            complement(1278..2480)
                     /locus_tag="RJ259_001501"
     CDS             complement(1278..2480)
                     /locus_tag="RJ259_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HDV7367182.1"
                     /translation="MQKHTKIHGFAKFKLIVILALMSSIAPLSTDMYLPALSHVEQSF
                     QTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCVIIDDI
                     YAFIALRFFEALGGCAGVVIARAIINDLFEIKEAAGIFALMMVFSSLAPMLSPTFGGI
                     LLEYFSWHSIFATLFALGILLFLMILFGLKESAPHLKNKKISHHEAMKSYKFVLSDKR
                     FLVYILCASFALAAMFAYITGSSFVFTQFFSLSEQKFALLFGANALGFVICANINARL
                     VLKYESEKILAKALMIMFISTVILLVNAFFHPNFLLFELSIFTSIAMLGFIAPNTTTL
                     AMARFKEHSGTASAVLGTVQFGFAGLISFVVGAINANTPIILAFVMCACVLVANMIYF
                     LIKIKEKK"
     gene            2583..3932
                     /locus_tag="RJ259_001502"
     CDS             2583..3932
                     /locus_tag="RJ259_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HDV7367183.1"
                     /translation="MQNLNQNEQIKCPSCGSFIDISTALYAQILDKAKQEMLKQKKEF
                     DDEVNAKRAEYIKALNDLKTQKIEQEKLINEQVSQKLLLEKQKFEQELLIQKQNFQKE
                     FSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENERLKREQKENEERLKFQAKEE
                     AFKEFKEQENKNLEFEREKMRLEFQKSTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQSEYLSDEVKEVPKGVNGADCLHIVKDNFGNICGSILYES
                     KRTKEFNKEWLDKLKLDSIAAKSDIAVLITKTMPKDKEKTHFKEGILICTFNEFKGVL
                     AVLRESIINAYKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEK
                     RALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEEGIKSLENLAKDED"
     gene            complement(3956..4999)
                     /locus_tag="RJ259_001503"
     CDS             complement(3956..4999)
                     /locus_tag="RJ259_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDV7367184.1"
                     /translation="MKKHILLLGLCLSLSLSAKSMSDYKVGEELSDKEGVEYFKELSK
                     RPVQEWPNKNLSINDVPKGKQGDLIRYGIELLSKTESTLGPYSKLKKTSNEVNCISCH
                     MDNDGNGLPGTKKYVIPFLNVLNNYPKLDIETMKIISVEDRIRGMGGTDSHRFPNDSK
                     EMKAILAYFKWLKEAYGIKDGVKLEGDFFAKMNFPNRPADPVRGKKLFEENCVACHGE
                     RGLGVKNDNYEQGSGHLYPSLLIYPDGGHMAMIPFLARFLKSAMPFGASADNPILSDE
                     DALDIAAYVNTGFVRMPITTTENRAGLDTAYSKSPSLKPEYFASPQQNLDPKEYIKVK
                     YGPWKNPNHFPGE"
BASE COUNT         1901 a          812 c          812 g         1568 t
ORIGIN      
        1 atataccaaa aatgaaaaag ataaagagta tttattatta acaagttgtc tacatatgaa
       61 agatgataca aaaaatataa aagtggaaca agcattgaat gttttaaaaa actatattca
      121 agaatatcaa gccaatataa ataaagatga taatttacta gactttattt atggcacttg
      181 cgatgaaatt gcaaatacta ataatattaa tcctatagaa ttgcaaaata aaatagtctt
      241 atcaatcgga attagattaa aagcagaaga atttatgtta tctaaagtaa atttgcaaaa
      301 tgaaattacc agaaatcaaa ctagaaattt atataattta accaaagaac aaaatgcaat
      361 aaatgataaa caagacttta taattagaaa agttttagca ataacttcag ataatattca
      421 tataaattct tttatgtatg agcctatctt agatacatct atcgaacatc tagtaaaatt
      481 atatcgtgat ataaaaaaga tttaaataag cataaaaacc gcacgaaaaa attccatagt
      541 gccaagctaa gccttaaagc ttagcttgaa attttatcat cagtctttta agtagtattc
      601 tatagtagaa accactctta tggttttgat ataaggggtg tttttatctc tgttgctgat
      661 gctaaattgt ccttgagaag ccttttttat cttgcctaga tggctgtttg agtcttgtgc
      721 gaattttatc gctgcatttc tagcattgag cgttgcttct tctatcattt gtggttttat
      781 atcatttagc ttggtgtaaa ggtattctat atcataatca tcgatttttg ttactatacc
      841 aaattttgca agacttgaaa tgttttctag tatgcttttt ccaagcttta cattttgagt
      901 atagatgagt aaattcgcag tgcctatgta tcggtatgca gcttgagtgt cgttgctata
      961 aggatcgctt aaacgatcta tgatatttgg cgagttgtag ctgatctcat cttcttttat
     1021 gccttgtttt tctaaaaatt tgatgatatt ttctttatct tgttctagtt cttcgtataa
     1081 atttgtaaga ttattgtttg atcttgtgaa ttttatagga agtatcaaag tatccgcttc
     1141 gatttctttt tgacttaaac cctttacact tacacttctt tcaagtgttt taaaatcact
     1201 taaagccttg ttaaatccaa aagctagaat caaacttgcc aaaactatgg ctaaagccat
     1261 aaagatatta tttgttttca ttttttctcc tttattttga ttagaaaata tatcatattt
     1321 gcaaccaata cgcaagcaca cattacaaaa gcaaggatta tcggcgtatt tgcgttaata
     1381 gccccaacca caaaagaaat aagccctgca aaaccaaatt gcaccgttcc aagcaccgca
     1441 gaagcagttc cgctatgttc tttaaacctt gccatagcca aagtcgtggt attgggtgcg
     1501 atgaaaccaa gcatagcgat acttgtaaaa atactaagtt caaaaagcaa gaaatttgga
     1561 tgaaaaaagg catttacaag taaaatcacg gtcgatataa acattatcat caaagctttt
     1621 gccaaaattt tttcgctttc gtattttaaa accaatctcg cattgatatt tgcacagatg
     1681 acaaaaccta aagcatttgc cccaaaaagc aaggcaaatt tttgctcact taagctaaaa
     1741 aactgcgtaa aaacaaagct tgatcctgtg atataagcaa acatcgccgc caaagcaaaa
     1801 gaagcacata gtatataaac caaaaagcgt ttatcgctta aaacaaattt gtagcttttc
     1861 atcgcttcat gatgggaaat ttttttgttt ttaagatgag gtgcggattc ttttaaacca
     1921 aaaagtatca tcaaaaaaag taaaattcct aaagcaaaca aagtcgcaaa aatactatgc
     1981 catgaaaaat actctagtaa aattccccca aaggttggtg aaagcatagg agcaagagaa
     2041 ctaaaaacca tcatcaaagc aaaaatccct gcagcttctt tgatctcaaa caagtcattg
     2101 ataatagccc ttgcgataac cacacctgca caacccccaa gtgcttcaaa aaatctcaaa
     2161 gcgataaaag cataaatatc atcgataatc acacaaaaca aactcgaaac gatgaagaaa
     2221 aatatcccca ccaaagctgg aattttacgc ccaaaaatat cacttaaagg cccatatata
     2281 agctgtccta aagcaaaagc gataaaaaaa cttgcgatac taagttgggt taaaaaagaa
     2341 ttagtttgaa aactttgctc cacatgagaa agtgcaggca aatacatatc tgtagaaagt
     2401 ggtgctatgc ttgacatcaa agcaaggata acgatgagtt taaatttagc aaagccgtga
     2461 attttggtgt gtttttgcat ttgtaatcct aattattcta aaagaatgat tttaacaagt
     2521 caatcttaga ataatctttg tttttctatg ttaaatttag ggaaaaattc taaggaaatt
     2581 ttatgcaaaa tttaaaccaa aatgaacaaa tcaaatgccc aagttgtgga agttttatcg
     2641 atatcagcac tgctttatat gctcaaattt tagataaagc taagcaagaa atgctaaaac
     2701 aaaaaaaaga atttgatgat gaggtaaatg ctaaaagagc tgaatatatc aaagctttaa
     2761 atgatttaaa aactcaaaag atagaacaag aaaaactcat aaacgagcaa gtaagccaaa
     2821 agcttctttt agaaaagcaa aaatttgaac aagaacttct tatacaaaag caaaatttcc
     2881 aaaaagaatt cagcgagaaa tttaacaaag agcatgaaaa tgaaatgaaa atcatgcaag
     2941 aagaactcga gaaaaaaagc aaagagctta gcgagttttt aagcataaag gctgaaaatg
     3001 aaagacttaa aagagaacaa aaagaaaatg aagaaagact gaaatttcaa gccaaagaag
     3061 aggcttttaa agaatttaaa gaacaagaaa acaaaaattt ggaatttgaa agagaaaaaa
     3121 tgcgtcttga atttcaaaaa agcactcaag agcaagatct taaatacaaa gaactagaaa
     3181 cgaattttaa aagcgtagcc caaaagctag aagacgcaca acgcaggata gaacaaggct
     3241 cacagcaact ccaaggcgaa gcagctgaac tactcataga agaatacata caaagtgagt
     3301 atttaagcga tgaagtaaaa gaagtgccaa agggcgtaaa tggagctgat tgtctgcata
     3361 tagtaaagga taattttgga aatatttgtg gaagtatttt atatgagagc aaacgcacta
     3421 aagaatttaa taaagaatgg cttgataaac ttaaactaga cagtatagcc gcaaaaagtg
     3481 atatagcggt tttgatcaca aaaactatgc caaaagataa agaaaaaacg cattttaaag
     3541 aaggaatttt gatttgtact tttaatgaat tcaaaggcgt tttagcagtg cttagagaaa
     3601 gcattataaa cgcttataaa ctcaaaaatg ccttacaaaa caaagatgaa aaaaatcaca
     3661 ttttatacga atacttaaat tccaaggaat ttaacacgca aattactttt atactcaaaa
     3721 cttaccaaaa tatgaaagaa gaattagaag ctgaaaaaag agctttgcaa aatatatgga
     3781 aaaaaagaga aagagctata gaaaatctaa gttttaattc cactgccata gtgagttctt
     3841 taaatgcgat atttagtgac ttacaaggtg gaaatttgat aggcgaagaa gggattaaaa
     3901 gtcttgaaaa tttagccaaa gatgaggatt aattttgggc taagcccaaa attaatcatt
     3961 ctcctgggaa gtgatttgga tttttccaag gtccgtattt tacttttatg tattctttag
     4021 ggtctaaatt ttgttgtggt gaagcaaaat actcaggttt taatgatggg gatttgctat
     4081 aagctgtatc aagtcctgca cgattttctg tagtggttat aggcattctt acaaaacctg
     4141 tattgacata agctgctata tccagtgcat cttcatcgct taatatagga ttatctgcac
     4201 tcgcaccaaa aggcatggct gattttaaaa atcttgctaa aaatggtatc atagccatgt
     4261 gtccaccatc aggatagata agtaaagatg gatataaatg tccgctacct tgttcgtaat
     4321 tatcattttt taccccaagt cctctttcgc catggcaagc aacgcaattt tcttcaaaga
     4381 gtttttttcc acgcacaggg tcagctgggc gatttggaaa attcatctta gcgaaaaaat
     4441 ctccttcaag ctttacgccg tctttgatgc cataagcttc ttttagccat ttaaaataag
     4501 ctaaaattgc tttcatttct ttagaatcat taggaaatct atgagagtca gttccaccca
     4561 ttccgcgaat tctatcttca acagagatga ttttcatcgt ttctatatca agttttggat
     4621 aattgtttag gacatttaaa aatggaataa catatttttt tgtccctggt aaaccattgc
     4681 cgtcattgtc catgtgacag gaaatacagt ttacttcgtt gcttgtcttt tttagcttgc
     4741 tatagggtcc tagagtactt tctgtcttgc ttaaaagctc tatgccataa cggattaaat
     4801 ccccttgctt accttttgga acatcattga tgcttaaatt tttatttggc cattcttgca
     4861 caggtctttt ggaaagttcc ttaaaatact ctactccttc cttgtcgctt aattcttctc
     4921 ctactttgta atcactcatg cttttagcac taagactcaa actaagacat aaaccaagca
     4981 ataaaatgtg ttttttcatg attttcctcc tttttatttg cagttcaaat tgattttagt
     5041 gtattttttc ttaaatatta agcataataa gaataattta aataaaatta aat
//
LOCUS       DAPIWJ010000098         5045 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.100, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000098 DAPIWJ010000000
VERSION     DAPIWJ010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5045)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5045)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5045
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.100"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            60..668
                     /gene="plsY"
                     /locus_tag="RJ259_001504"
     CDS             60..668
                     /gene="plsY"
                     /locus_tag="RJ259_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HDV7367185.1"
                     /translation="MENLIIYAFIYLLGSIPFGLILAKFFAKTDIKKEGSKSIGATNV
                     LRVVKEKNPKLAKKLAIATIILDFAKAAIPLLTLKFLHYDQALLWSVAVLAILGHCFS
                     IYLLFEGGKGIATGAGAMIVLLPLEVLTAFIVWVVIGKIFKISSLASLAALFAFVISS
                     FIFNYDLEIHTHAPVFIIAFIIVYKHLPNIKRLIFKEECKVI"
     gene            653..970
                     /locus_tag="RJ259_001505"
     CDS             653..970
                     /locus_tag="RJ259_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HDV7367186.1"
                     /translation="MQSHIKIKFHFKCIIGILDFERRKKQKIIIKLKAKANEFLNYAE
                     VITKIKTWYKKEEFYTLEESLDFVSLNLKKDFPNLTNLNIKIFKPHIIKNATVGVKLK
                     KKY"
     gene            1049..1720
                     /gene="hsrA"
                     /locus_tag="RJ259_001506"
     CDS             1049..1720
                     /gene="hsrA"
                     /locus_tag="RJ259_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homeostatic response regulator transcription
                     factor HsrA"
                     /protein_id="HDV7367187.1"
                     /translation="MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRH
                     YDLVLANWTLPDGDGAELVNTIKHKSPRTSVMIMSSKTDKETEIKALKAGADDFVTKP
                     LDFDILLARIEARLRLGGTNVIKIEDLVIDPDEEKITYKDQDIELKGKPFEVLTHLAR
                     HSDQIVSKEQLLDAIWEEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFC
                     FPKKS"
     gene            1833..2078
                     /locus_tag="RJ259_001507"
     CDS             1833..2078
                     /locus_tag="RJ259_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HDV7367188.1"
                     /translation="MSLLITKDCVCCDACREECPDEAIYENSPIYVIDPDLCSECVND
                     FSEPACIVACPYECIIPDPDNVETIEELKLKHRDREF"
     gene            2078..3538
                     /locus_tag="RJ259_001508"
     CDS             2078..3538
                     /locus_tag="RJ259_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HDV7367189.1"
                     /translation="MAKKTAVVDLGSNSIRMVIFEKTSRYGFYTTCEYKRKVRLGENA
                     YNNGKILQEEAMQRAEDALAFFKQCALKHKCKKIFIVGTSALRDAPNSKNFIKRIKDN
                     LSLNIRCIDGKSESYLGGLAALNLLSPFKDGTTLDIGGGSSELCLIKNNRIISCISLD
                     IGTVRLKELFYDTGKMDSLEEFIKPILEQIPKEFYNQNLIAIGGSLRAISNSIMQKNS
                     YPLKNLHDFRYMLDEEKGHILKIFNSNLDSLINFGIKKDRFDTIKEGIFIFLKIAEKI
                     KAKQVITSGVGIREGVYLQDLLRPKITFPPNFNPSLKCLQDKFLQSKQKNKTPHFALQ
                     IFTTLKNLHKLNDNYKHTLLNAAKLCHIGEYLNFYFANEHSAHFVLGGLNYGFSHKEK
                     ALIASIIKLNGKKVNPYNLEPYKQLLPNIHTISWLNFILCLAKTLSTNEDKIDFAFAN
                     NTLYIYQENKILNLPKDELKKIAKPATIALAINQKI"
     gene            complement(3535..4332)
                     /locus_tag="RJ259_001509"
     CDS             complement(3535..4332)
                     /locus_tag="RJ259_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367190.1"
                     /translation="MRLLVLFFLILPLYSVELISFNIYDRNDRVDLMLSFDNAYNGKI
                     SQKKEKNLTLLTFSDLTYSKDELKELNSQLVDKISISSKNNNTYIMLQNKQNINLELS
                     SINDKFGVRIRAIEQGKANIESVPTTTVNNSQELMPKPKSTSLEGYDYTNYILVMLIL
                     VILLIVLWWFKKTMVYKNNNVSRDFTMIFQRFLDKNNQLVIFDHANKRYTMIIGNSNV
                     LLESVEIPEEQTIKHTEKTEKNFDSFFEENKKRIQNLIEQRQKGKKS"
     gene            complement(4333..4641)
                     /gene="fliN"
                     /locus_tag="RJ259_001510"
     CDS             complement(4333..4641)
                     /gene="fliN"
                     /locus_tag="RJ259_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HDV7367191.1"
                     /translation="MSDDIEFNIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKL
                     EVGSVIDLEKPAGESVELYINKRIFGKGEVMVYEKNLAIRINEILDSKTVLQYFKKEI
                     "
     gene            complement(4641..>5045)
                     /locus_tag="RJ259_001511"
     CDS             complement(4641..>5045)
                     /locus_tag="RJ259_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheX"
                     /protein_id="HDV7367192.1"
                     /translation="YSITHFCEHILRLRIEAAQDISGELYGASIPIMGKSEGECNFYL
                     FFPKEFLKKIAEILINDEKFKEDDWCDLTKECANQIIGYAKNLLNDAKGDDEYKLGIP
                     EYLGKVDFSEIVLDEALTYKFENCYFRIGYCK"
BASE COUNT         1844 a          740 c          690 g         1771 t
ORIGIN      
        1 ataagatata atttttagtt ataaatctta aaattttaag atgatttgaa aaggatatta
       61 tggaaaattt aataatttac gcttttatat atcttttagg ttcaatccct tttgggctaa
      121 tcctagctaa attttttgct aaaactgata tcaaaaaaga aggttcaaaa agtatagggg
      181 caaccaatgt tttaagagta gtaaaagaaa aaaatcccaa actagcaaaa aaacttgcca
      241 ttgctacaat aattttagat tttgcaaaag cagctattcc tttattaacc ttgaaatttc
      301 ttcattatga tcaagctttg ctttggagcg tggcagtttt ggctattttg ggacactgtt
      361 tttcaattta cttgttattt gaaggaggga aaggcatagc aacaggagca ggcgctatga
      421 tagttttgct tccattggaa gtgcttacag catttattgt gtgggtagtt attggaaaaa
      481 tttttaaaat atcttcgcta gcttctttag cagcgttatt tgcttttgtt ataagttctt
      541 ttatatttaa ttatgactta gaaattcata cacatgcacc cgttttcatt atcgctttta
      601 ttatagtata taaacatcta cctaatatta aaagattgat ttttaaagaa gaatgcaaag
      661 tcatataaaa ataaaatttc actttaagtg tatcattggt atattagatt tcgaaagaag
      721 gaaaaaacaa aaaattatta tcaagcttaa agctaaagca aatgaatttt taaattatgc
      781 agaagtaatt accaaaatta aaacatggta taaaaaagaa gaattttaca cccttgaaga
      841 gtctttagac tttgtaagct taaatttaaa aaaagatttt cctaatttaa ccaatcttaa
      901 cataaaaatt ttcaaacccc atataataaa aaatgctaca gttggggtta aattgaaaaa
      961 aaaatattaa ttttttttta aagatatcta aacatttact taagctatga tataattctt
     1021 taaatttttc ttaataagga tagaacaaat gagaatttta gttatagaag atgagattag
     1081 cctaaataaa acaattatag acaatcttaa tgaatttggt tatcaaactg attcttctga
     1141 aaattttaaa gatggagaat actttatcgg cattagacat tatgatttag ttttagcaaa
     1201 ctggacttta cctgatggag atggagcgga acttgttaac actattaagc ataaatctcc
     1261 aagaacttca gttatgatta tgtcttcaaa aacagacaaa gaaacagaaa tcaaagcttt
     1321 gaaagctgga gctgatgatt ttgttacaaa acctttagat tttgatattc tactcgcaag
     1381 aattgaagca agactaagac ttggcggaac caatgttatt aaaattgaag acttagttat
     1441 tgatccagat gaggaaaaaa ttacttataa agatcaagat atagaactta aaggaaaacc
     1501 ttttgaagtt ttaacgcact tagcaagaca ttcggatcaa attgtatcca aagaacaact
     1561 tttagatgcc atctgggaag aacctgagct agtaactcca aatgttatcg aagtagctat
     1621 caatcaaatt cgtcaaaaaa tggataaacc attaaatata tctaccatag aaacagttcg
     1681 tcgtagagga taccgtttct gcttccctaa aaaatcttaa caattttgca ccttcggtgc
     1741 aaaaaattta tctttatttc tatttttata ttttatttaa gtttggttat tgtataaact
     1801 aaaattattt tttaaatttt tgaaaggtta tgatgtctct tttaattaca aaagactgcg
     1861 tatgttgtga tgcttgcaga gaagaatgtc ctgatgaagc tatttatgaa aatagtccaa
     1921 tttatgtaat agaccctgat ctttgttcag agtgcgttaa tgatttttca gagcctgcct
     1981 gtattgttgc ttgcccatat gaatgtatca ttcctgatcc tgataatgta gaaactatag
     2041 aagaattaaa actcaaacat agagatagag aattttaatg gcaaaaaaaa cagccgttgt
     2101 tgatcttggc tcaaactcca ttagaatggt gatttttgaa aaaacttcta gatatggttt
     2161 ttatacaact tgcgaataca aacgcaaagt aagacttgga gaaaatgctt ataataatgg
     2221 caaaattctc caagaagaag ccatgcaaag agccgaagat gccttagctt ttttcaaaca
     2281 atgcgcttta aagcataagt gcaaaaaaat atttatagta ggcacatcag ccttaagaga
     2341 tgccccaaat tcaaaaaatt tcattaaaag aatcaaagat aatctgtctt taaatatacg
     2401 ctgtatagat ggaaaaagcg aaagttactt aggtggtctt gcggctctaa atttattaag
     2461 tccttttaag gatggaacca ctttagacat aggtggtggt tctagtgaat tgtgtttaat
     2521 aaaaaataat agaattattt cttgcatatc tcttgatatt ggcactgtta ggctaaaaga
     2581 attgttctat gatactggaa aaatggattc tttagaagaa tttataaaac caattttaga
     2641 acaaattcct aaagaatttt acaatcaaaa ccttattgca ataggtggaa gcttaagagc
     2701 aatatctaat tccatcatgc aaaaaaattc ctatccactg aaaaatttac atgattttcg
     2761 ctatatgcta gatgaagaaa aaggacatat tttaaaaatt tttaattcaa acttagactc
     2821 tttaatcaat tttggcataa aaaaggatcg ttttgatacc attaaagagg gtatatttat
     2881 ttttttaaag attgcggaaa aaataaaagc caaacaagtt atcacgagtg gggttggaat
     2941 cagagaagga gtttatttgc aagatttact tcgtcctaaa atcacatttc caccaaattt
     3001 caatcccagt ttaaaatgtt tgcaagataa atttttacaa tcaaaacaaa aaaataaaac
     3061 tccacatttt gctctgcaaa tttttacaac ccttaaaaat cttcataaac ttaacgataa
     3121 ctataagcat actttactaa atgctgccaa attatgccat attggagaat atttaaattt
     3181 ctattttgct aatgaacact ctgctcattt tgtactaggt ggattaaatt atggattttc
     3241 gcataaagaa aaagctttaa ttgctagtat tattaagctt aatggaaaaa aagttaatcc
     3301 ttataatctt gaaccctata aacaactttt acccaatatt cataccattt catggcttaa
     3361 ttttattttg tgcttagcta aaactttaag cacaaatgaa gataagattg attttgcttt
     3421 tgcaaacaat actctttata tatatcaaga aaacaaaatt cttaatttac ccaaagatga
     3481 gctcaaaaaa attgcaaaac cagctaccat agcattagca atcaatcaaa aaatttaaga
     3541 ttttttacct ttttgacgct gctctataag attttgaatt ctttttttat tctcttcaaa
     3601 aaaagaatca aaatttttct ctgttttttc tgtatgtttt attgtttgtt cctctggaat
     3661 ttcaacactt tctaaaagta cattggaatt acctattatc attgtataac gtttattagc
     3721 gtgatcaaaa ataacaagtt gattattttt atctaaaaat ctttggaaaa tcatagtaaa
     3781 atctctagaa acattgttat ttttataaac catagtcttt ttaaaccacc aaagcactat
     3841 taacaaaata actaaaatta gcattactaa gatataattt gtataatcat acccttctaa
     3901 acttgtactt tttggtttag gcattaattc ttgagaatta ttcacagtag ttgtaggtac
     3961 agattcgata tttgcttttc cttgctctat agctcgtatc cttactccaa atttatcatt
     4021 gatagagcta agttctaaat taatattttg tttgttttgt agcataatat aggtattatt
     4081 atttttagaa ctaatactaa ttttatctac aagttgagag ttaagttctt ttaattcatc
     4141 tttagaatac gttaaatcac taaaagttaa aagagttaaa tttttttctt ttttttgaga
     4201 aatcttgcca ttataggcat tatcaaaaga aagcattaaa tctactcgat catttctatc
     4261 gtagatatta aaactaatca gctcaacact atataaaggt aaaattaaaa aaaataatac
     4321 tagcaatctc atttaaattt cttttttaaa gtattgaagc acagtcttag aatccaaaat
     4381 ttcattaatt cttatagcga gatttttttc ataaaccata acctcgcctt tgccaaaaat
     4441 tcttttattg atataaagct caacgctttc tccagcaggc ttttcaagat caataaccga
     4501 acctacttca agttttaaaa gctccgctac actcatattt gtagttccaa gctcgcttac
     4561 aaaatctact gtaatatcta agatatcttc ataagattgt aaaagcccat gatgaatgtt
     4621 aaactctata tcatcgctca ttatttgcaa tatcctattc taaaataaca attttcaaat
     4681 ttataagtta aagcttcatc tagaactatt tcagaaaaat caacttttcc taaatattcc
     4741 ggaattccga gtttatactc gtcatcaccc ttggcatcat ttaacaaatt tttagcataa
     4801 cctataatct gattggcaca ttctttagtt aaatcgcacc agtcatcttc tttaaatttt
     4861 tcatcattaa ttaaaatttc tgcaattttt tttaaaaatt cttttggaaa aaataaataa
     4921 aaattacatt ctccttcgct tttgcccatg ataggaatac tcgctccata aagttcaccg
     4981 cttatatctt gagctgcttc aatgcgaagt cttaagatat gctcgcaaaa atgagtgatg
     5041 gaata
//
LOCUS       DAPIWJ010000099         5043 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.101, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000099 DAPIWJ010000000
VERSION     DAPIWJ010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5043)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5043)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5043
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.101"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(57..566)
                     /locus_tag="RJ259_001512"
     CDS             complement(57..566)
                     /locus_tag="RJ259_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HDV7367193.1"
                     /translation="MHFTIFHIIAFIILLICFALICILIFLKVKQKEMALISYTIATI
                     FTALLIYSIFLTINQFTTQADLSKLTYTRDLRHESVIVSGKVQNLTKFEIRKCYLMLS
                     ILNQKQVGGEIFNDKNVRNAKMQNTSVSYTIEIIDTLPGNTYKEFRASVPFPPSFNNP
                     EFYHTLKCI"
     gene            complement(566..1096)
                     /locus_tag="RJ259_001513"
     CDS             complement(566..1096)
                     /locus_tag="RJ259_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HDV7367194.1"
                     /translation="MEKLREIVLFYTTHLYLVDYMLILLVFFLFTCVLLLCVFLRHRP
                     IAALFIIAFDIIICFLVYIYGYKLIDNEVRTRKTAITDQKMIQSSNDLIVDFNITNNS
                     KNNFKECKITAKIFADKIPNDNIIEEYKKKFIPFRQKSREIKDLKKNATQVQRIAFEN
                     FNYENNYTIRLVSECF"
     gene            complement(1109..2197)
                     /locus_tag="RJ259_001514"
     CDS             complement(1109..2197)
                     /locus_tag="RJ259_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HDV7367195.1"
                     /translation="MPADLNDYFNKKNGNSNNNGNNNRQNFNFKAPEFNFKGFGKFSP
                     FVYGVIIIILFLIVAKPFMVINSGEMGIKSTTGKYDPNPLEPGLHFFLPFVQKITIID
                     TRVRQINYASIEGSNENLSSGSGVINKNSISVLDSRGLPVSIDVTVQYRLNPLQVPQT
                     IATWSLNWENKIIDPVVRDVVRSVVGKYTAEELPTNRNTIAAQIEEGIRKTIEAQPNE
                     PVELRAVQLREIILPSKVKEQIERVQIAKQEAERTKYEVERANQEALKKAALAEGEAN
                     ATIISAKGKAMAVKIEADAQAYSNKEIANSLNTPLLNLKQIETQKEFNEALKVNQDAK
                     IFLTPGGAVPNIWVDTKDAKKQSAANMN"
     gene            complement(2210..3124)
                     /gene="ilvE"
                     /locus_tag="RJ259_001515"
     CDS             complement(2210..3124)
                     /gene="ilvE"
                     /locus_tag="RJ259_001515"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HDV7367196.1"
                     /translation="MISADKIWMDGKLVDFKDATLHFLTHSLHYGNAVFEGTRAYKTD
                     KGLAIFRLEDHTKRLLESAKITLLNCPFSQKDLENAQIELLKANNFQSNVYIRPLIFL
                     GDGVMGLYHIKAPVRVGIAAWEWGAYLGEEGLEKGIKVKISSFARNSVKSCMGKAKAS
                     ANYLNSQIAKFEAIEAGYEEALMLDEEGFIAEGTGECFFIVKDGVLITPPNDFSLKSI
                     TQDTVLKIAHDLGITVLRQRISRDEVYTADEAFFTGTAAEITPINNIDARIIGNGLRG
                     SVTKKLQDAYFDVVYGRNEKYASMLTYI"
     gene            3300..3506
                     /locus_tag="RJ259_001516"
     CDS             3300..3506
                     /locus_tag="RJ259_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HDV7367197.1"
                     /translation="MPLVNIKLAKPSLSKEQKAELIADITELLSTKYNKSKERVVVVL
                     EDVENYDIGFGGESVEAIKAKANK"
     gene            3503..3958
                     /gene="bcp"
                     /locus_tag="RJ259_001517"
     CDS             3503..3958
                     /gene="bcp"
                     /locus_tag="RJ259_001517"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HDV7367198.1"
                     /translation="MSLNIGDKAPQFELLNQDGVKIALKDFIGKKVILYFYPKDNTPG
                     CTTEACDFSANYDKFGGKNAVIIGISPDSVTSHEKFISKFNLKHILLSDSEKEVAKAY
                     RAWGLKKNYGKEYEGIIRSTFVIDETGKIAQIYSNVRVKDHALKVLESL"
     gene            3958..>5043
                     /locus_tag="RJ259_001518"
     CDS             3958..>5043
                     /locus_tag="RJ259_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HDV7367199.1"
                     /translation="MLVHICCSVDSHYFIEELRKTYPDEKIIGYFYDPNIHPLSEYEL
                     RFLDVKRSCDKLGIKLYKGEYEYEKWLNAVRGYEDEPEKGARCEICFDVRMGSSVKFA
                     AKIGEKKLTTTLLTSPKKDLEQLKNALQKECEPYGVEFLAPDFRKNGGTQRQFALAKK
                     EMLYHQNYCGCIYGLKKQKQDKNFIDELMSSVNKQILPASIEARIALYKKVVLWEKKG
                     IKFEILREKFLNYRLLSALIKLDKKPVKSHILFYSHFKNAYTRFSLDEENLKQNLKEG
                     FYRSTKDEIVLVEFWRFNAFFKNKWKNFEDFLKKPLSVQAEIKWRNKLFGTYNLSPII
                     ILENILPSRYEVIAKSEIYHDNQEVLVK"
BASE COUNT         1710 a          688 c          827 g         1818 t
ORIGIN      
        1 ttttgttgtg tgaataatta atgtatttta gaatttttac tagttgattt cttgaatcaa
       61 atacatttta aggtgtgata aaattcagga ttattaaaac ttggaggaaa aggaacactg
      121 gctctaaatt ctttataggt attacctggg agtgtgtcta tgatttctat agtataagaa
      181 acacttgtat tttgcatttt agcgttacgg acatttttat cattgaaaat ttctcctcct
      241 acttgttttt ggtttaatat actaagcatt aaataacatt ttctgatttc aaatttagta
      301 agattttgaa cttttccact tactataacg ctttcatgtc ttagatctct tgtgtaggtt
      361 agtttgctaa gatcggcttg agtggtgaat tgattgattg tcagaaaaat agaatatatc
      421 aaaagtgcgg taaaaatagt agctatggta taagaaatca aagccatttc tttctgtttg
      481 acttttagaa agattaaaat acaaatcaag gcaaagcaaa taagtaaaat gataaaagct
      541 ataatatgaa aaatcgtaaa atgcattaaa aacactccga aactaagcgt atggtatagt
      601 tattttcata gttaaaattt tcaaaagcaa ttctttgaac ttgggttgcg tttttcttta
      661 gatctttaat ttctctactt ttttgtctaa aagggataaa tttcttttta tattcttcta
      721 tgatattatc attaggtatt ttatctgcaa aaattttagc tgtaatttta cattctttaa
      781 aattattttt tgaattattt gtaatgttaa aatcaacaat taaatcattt gagctttgta
      841 tcattttttg atctgtaata gcggtttttc gagttcttac ttcattgtct attagtttat
      901 acccatagat ataaactaaa aaacaaataa taatgtcaaa tgcgataata aaaagtgccg
      961 ctataggcct atggcgtaaa aatacacaaa gaagtaaaac acaagtgaag agaaaaaaaa
     1021 ctaataaaat cagcatataa tctactaaat ataaatgagt agtgtaaaaa agcacgattt
     1081 ctcttagttt ctccacttgc gtatcctttt agttcatgtt ggcagcactt tgctttttag
     1141 catctttggt atcaacccaa atgtttggca ctgctccacc tggagttaag aaaattttag
     1201 catcttgatt aacttttaag gcttcattaa attctttttg agtttcaatt tgttttaaat
     1261 ttagcaaagg ggtgtttagg ctgtttgcga tttctttgtt agaataagct tgtgcatctg
     1321 cttctatttt aacagccata gctttacctt tggcgctgat tatggttgca tttgcttccc
     1381 cttcagctaa agcagctttt tttaaggctt cttgattagc tctttctact tcatatttag
     1441 ttctttcagc ctcttgtttt gcaatttgca cgcgttcgat ttgttctttt acttttgaag
     1501 gtaaaataat ttctctaagt tgtacagcgc gaagttctac aggttcgttt ggttgggctt
     1561 ctatggtttt tcttatacct tcttctattt gagcggctat tgtgttacga ttagtaggaa
     1621 gttcttcggc tgtatatttt cctacaacac ttcgcactac atcacgaaca actggatcga
     1681 taattttatt ttcccaattt aagctccaag tagctatggt ttgaggaact tgcaaaggat
     1741 ttaaacggta ttgcactgta acatcaatag atacaggcaa tccacgagaa tcaagtacag
     1801 aaatactatt tttattaata acacctgaac ctgaagataa attttcatta cttccctcta
     1861 tagaagcata gttgatttgt cttactctag tatcgattat ggttattttt tgtacaaaag
     1921 gtaagaaaaa gtgaagtcct ggttctaatg gatttgggtc atatttacct gttgttgatt
     1981 taatccccat ttccccagaa tttatcacca taaaaggttt tgcaacgatt aaaaataaga
     2041 taataataat caccccataa acaaatggag agaatttccc aaaaccttta aaattaaatt
     2101 ctggtgcttt gaaattgaaa ttttgacggt tgttgtttcc gttattgtta gaatttccat
     2161 tttttttatt gaaataatca ttcaaatcag ctggcattta tttccttttt taaatataag
     2221 ttagcataga tgcgtatttt tcattgcgtc cataaactac atcaaaataa gcatcttgaa
     2281 gttttttagt tacagatcct cttaaaccat ttcctattat tcttgcatcg atattgttaa
     2341 taggtgtgat ttcagcggct gttccggtaa aaaatgcttc atcagcagta taaacttcat
     2401 ctcttgaaat tctttggcga agcacggtga taccaagatc atgagcgatt ttaagcactg
     2461 tatcttgagt aatgcttttt aaagaaaaat catttggagg tgtgattaaa accccatctt
     2521 ttacaataaa gaaacattct cctgttcctt ctgcgataaa accttcttca tcaagcatta
     2581 aagcttcttc atatcctgct tcaatagctt caaattttgc aatttgagag ttaagataat
     2641 ttgcacttgc tttagctttt cccatgcatg atttaacact atttcttgca aaagacgaaa
     2701 tttttacttt tatgcctttt tctaaacctt cttctccaag gtaagcaccc cattcccaag
     2761 ctgcaattcc aactcttaca ggagctttta tatgataaag tcccataact ccatcgccta
     2821 agaaaatcag agggcggata tagacattgc tttgaaaatt gtttgctttt aagagttcaa
     2881 tttgtgcatt ttcaagatct ttttgagaaa aaggacaatt taaaagagta atttttgcag
     2941 actctaaaag tcttttggtg tgatcttcaa gtctgaaaat tgctaagcct ttatctgttt
     3001 tataggctct agttccttca aaaacagcat tgccataatg caaagaatgg gttaaaaagt
     3061 gcaaagttgc atctttaaaa tcaactaatt ttccatccat ccaaatttta tctgctgaga
     3121 tcattttttt accttttata gttgtttatt tcttaaaaaa tattatttta agaataaatc
     3181 gggattttat caaaaatata ctaacaataa gcttttatta aattaaggtt ttttgttaaa
     3241 aaaaatatta ggtatttttt gaaataatta tgaaaaatta tcgttaaaaa ggagaaatta
     3301 tgccattagt aaatatcaaa ttagcaaagc cgtctttaag caaggaacaa aaagcggaac
     3361 ttatagctga tattaccgaa cttttaagca cgaaatataa taaaagtaaa gaaagagttg
     3421 ttgtggtttt agaagatgtg gaaaattatg acataggctt tggcggagaa agtgtagaag
     3481 ctatcaaagc aaaggcaaat aaatgagttt aaatatagga gataaggcac ctcaatttga
     3541 gcttttaaat caagatgggg taaaaatagc attaaaagat tttattggca aaaaggtgat
     3601 tttgtatttt tatccaaaag ataatacccc aggttgtact acagaagctt gtgattttag
     3661 tgcaaattat gataaatttg gtggtaaaaa tgcagtgatt attggtatta gtcctgatag
     3721 tgtgacaagt catgaaaaat ttatttctaa atttaattta aagcatattt tacttagtga
     3781 tagcgaaaaa gaagttgcta aagcttatag agcttggggg cttaagaaaa attacggaaa
     3841 agaatatgaa ggcatcattc gttctacttt tgttatcgat gaaacaggta agattgctca
     3901 aatttatagt aatgttcgtg taaaagatca tgctttaaaa gtgcttgaaa gtctttaatg
     3961 ctggtgcata tttgttgtag tgtagatagt cattatttta ttgaagaact tagaaagact
     4021 tatcctgatg aaaaaatcat aggatatttt tatgatccaa atatccatcc tttaagcgaa
     4081 tacgaactaa gatttttaga tgtaaaaaga tcttgtgata aacttggcat taagttatat
     4141 aagggcgagt atgagtatga aaaatggctt aatgctgtgc gtggttatga agatgagcct
     4201 gaaaaaggtg caaggtgtga aatttgcttt gatgtaagaa tgggatctag tgttaaattt
     4261 gctgctaaaa taggagaaaa aaagcttact actacgcttt taactagccc taaaaaagat
     4321 ttagaacagt taaaaaatgc tttacaaaaa gaatgtgagc cttatggggt agagttttta
     4381 gctcctgatt ttcgtaaaaa tggcggcact caaaggcagt ttgctttagc aaaaaaagaa
     4441 atgctctatc atcaaaatta ttgtggttgt atttatggac ttaaaaaaca aaaacaagat
     4501 aagaatttca ttgatgaatt aatgtcttct gtaaataagc aaattttacc tgcaagtata
     4561 gaagcaagaa tagctcttta taaaaaagta gttttatggg aaaaaaaggg tataaaattt
     4621 gaaattttaa gagagaaatt tttaaattat cgtcttttaa gcgctttgat aaaattagat
     4681 aaaaagcccg ttaaatctca tattttattt tattcgcatt ttaaaaacgc ttatacaaga
     4741 ttttctttag atgaggaaaa tttaaaacaa aatttaaaag aaggctttta tagaagtact
     4801 aaagatgaaa tagttttagt ggaattttgg cgttttaatg cattttttaa aaacaaatgg
     4861 aaaaattttg aagatttttt aaaaaaacct ttaagtgttc aagcagaaat taaatggcgt
     4921 aataaattgt ttggaactta taatcttagt cctattatca tccttgaaaa tattttacct
     4981 tcaagatatg aagtgatagc aaaaagtgaa atttatcatg ataatcaaga ggtgcttgta
     5041 aaa
//
LOCUS       DAPIWJ010000100         4934 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.102, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000100 DAPIWJ010000000
VERSION     DAPIWJ010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4934)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4934)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4934
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.102"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..450)
                     /locus_tag="RJ259_001519"
     CDS             complement(<1..450)
                     /locus_tag="RJ259_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HDV7367200.1"
                     /translation="MEKIKNYKLIIILLSLDLLALLYGTSTLSISADEADIYFGEQGK
                     SLIFSHSLLYYISHFGTFIFGQNDFGLRLPFLFFHFLSCLLLYLLALKYTKTKIDAFF
                     SLLLFVLLPGTVASALLVNAASLVIFLTLAILCAYEYEKKWLFYILLI"
     gene            578..1162
                     /locus_tag="RJ259_001520"
     CDS             578..1162
                     /locus_tag="RJ259_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HDV7367201.1"
                     /translation="MQTIDQIFQTQIDIKKSTFLSFLCPFKDFKFLIETLKKEHPKAV
                     HFVYAYRVLNDFNQIVEDKSDDGEPKGTSGMPTLNVLRGYDLINAALITVRYFGGIKL
                     GTGGLVRAYSDAANAVINNSSLLSFELKKNTTIAIDLKNLNRFEHFLKTYSFNFTKDF
                     KDCKAILHIKLNEKEEQEFEIFCKNFAPFEIEKL"
     gene            complement(1206..1589)
                     /locus_tag="RJ259_001521"
     CDS             complement(1206..1589)
                     /locus_tag="RJ259_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367202.1"
                     /translation="MQVNYRTISSYEYDAISGQYKQVDKQIEDYSSSGDSDFMDMLNK
                     ADEKSSGDALNSSSSFQSNAQNSNSNLSNYAQMSNVYAYRFRQNEGELSMRAQSASVH
                     NDLTQQGANEQSKNNTLLNDLLNAI"
     gene            complement(1664..1999)
                     /locus_tag="RJ259_001522"
     CDS             complement(1664..1999)
                     /locus_tag="RJ259_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367203.1"
                     /translation="MMAKFRIQYSAGFGHYTQNHKGFGPTIYIEEVVEFDNGKDYFDY
                     IDFYKTYSKSDDTYFHISFLEDRPLSDKEIIIRNEYRKMRDENCKKAKEEFIANNELD
                     VEHLPTHHD"
     gene            complement(1989..3566)
                     /locus_tag="RJ259_001523"
     CDS             complement(1989..3566)
                     /locus_tag="RJ259_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HDV7367204.1"
                     /translation="MVEVKNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFL
                     KILSGEIESSSGEIVFDEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYEALKEKEKL
                     YMSEEFTDEINERLGELEIITAEEDPNYDCETRCEKILSSLKIKDFDALMSTLQSADK
                     FKVLLAQVLFLGADALFLDEPTNNLDLEAISWLENELLRHEGTLVVISHDRHFLNKIC
                     TRILDVDFKQIRDFAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANAS
                     KAKQATSRAKALEKLELEEIKISSRRDPSIVFRTNREIGNEVLEIKGIGKAYDKQLFS
                     NLELKIEKNDKIALIGANGVGKSTLAKIIAHAISPDSGSIHLGATIELGYFPQDTSNL
                     ICENLKLYEWLMSEKFKDLDEIRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLML
                     ERPNFLLLDEPDNHLDLESIIALGEALYNFKGVVLCISHDRELVSAFANRIWHLENGK
                     LTDFRGTYQEFLGENDG"
     gene            complement(3696..4112)
                     /locus_tag="RJ259_001524"
     CDS             complement(3696..4112)
                     /locus_tag="RJ259_001524"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367205.1"
                     /translation="MFKKVILFFLMGFALLQANSLDKCDNTAVVSNLKEKIPSEIFKN
                     LYELSGLKAQGIDYEDYAKGLKEIAKHDGMVNYTDMIEVNSISNFDLNFDSCMATINA
                     ALKGEQRKGLWSVVYKVSNINQVKITDITYINGDFQ"
     gene            complement(4125..4757)
                     /locus_tag="RJ259_001525"
     CDS             complement(4125..4757)
                     /locus_tag="RJ259_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system YwqK family antitoxin"
                     /protein_id="HDV7367206.1"
                     /translation="MTKFLSICSLIAMLLSGCGSDFPGQPSDVARVQQNKYPNGNLKE
                     EIPYNKDSRIHGLKRAFYDNGQLRAEENYKNGKKDGISREYSRNGQLLEEVHFKDNRG
                     YGDFASYYENGNMRAKGKLLGYNEDGMPEFEGNYKEYYENGTLMCDYNFDNKGKFDGV
                     QKRYDENGALEDEENYKNGLKNGVFREYKKGEIVREEEYKNGILVAKPKN"
     gene            complement(4766..4921)
                     /locus_tag="RJ259_001526"
     CDS             complement(4766..4921)
                     /locus_tag="RJ259_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002899643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superinfection immunity protein"
                     /protein_id="HDV7367207.1"
                     /translation="MGLSRKHSNWLIISLLNLFFGWTIIVWLVCLIWSFTGSFKQTII
                     IKEKNEK"
BASE COUNT         1708 a          922 c          583 g         1721 t
ORIGIN      
        1 aatcaataat atataaaaaa gccatttttt ttcatattcg taagcacata atatagcaag
       61 ggttaaaaaa atcaccaaag atgcggcatt aaccagtaaa gcacttgcaa cagtacccgg
      121 caataaaaca aataacaata aagaaaaaaa agcatcaatt ttagttttag tatattttaa
      181 agctagcaaa tacaaaagca aacaacttaa aaaatgaaaa aataaaaaag gaagccttaa
      241 accaaaatca ttttgcccaa aaataaaagt tccaaaatga gatatataat aaagcaaact
      301 atgagaaaaa ataagtgatt taccctgctc accaaaataa atatcagctt catcagcact
      361 aatactcagt gttgaagttc cataaagcaa agccaacaaa tcaagactaa gtaaaatgat
      421 gataagttta taatttttga ttttttccat aatgaaaatt ttacaaaatt aaacttaaaa
      481 tatcaatgca aatcatacaa atatcaaata tcttaaaaat taacatcaaa ttgattttag
      541 tttttataag tataatttta aataaaagaa ggcaaaaatg caaactattg atcaaatttt
      601 tcaaacacaa atcgatatta aaaaatctac tttcttatct tttctttgcc cttttaaaga
      661 ttttaaattt ttaatagaaa cactaaaaaa agaacatcca aaagccgttc attttgtcta
      721 tgcttatcgt gttttaaatg atttcaatca aattgtagaa gataaaagtg atgatggaga
      781 gcctaaagga acttctggaa tgccaacttt aaatgttcta aggggctatg atcttatcaa
      841 tgcggcttta atcactgtaa gatattttgg cggtataaaa cttggtacag ggggacttgt
      901 aagagcttat agcgatgcag caaatgctgt gataaataat tcttctttac tttcattcga
      961 attgaaaaaa aatacaacca ttgctattga tttaaaaaat ttaaatcgtt ttgaacattt
     1021 tttaaaaact tattctttta atttcacaaa agattttaag gattgcaaag ctatattaca
     1081 tatcaaatta aatgaaaaag aggagcaaga atttgaaatt ttttgtaaaa attttgcacc
     1141 ttttgaaata gagaaattat aaattcttgc aagtaaatat aaaagctcca aaatggagct
     1201 tttgattaaa ttgcgttcaa taaatcattt aacaaagtat tattcttact ttgttcattt
     1261 gcaccttgtt gtgtaagatc attatgaacg ctagcacttt gagctctcat agacagctcg
     1321 ccttcatttt gtctaaaacg ataagcgtaa acatttgaca tttgagcata attacttaaa
     1381 tttgaatttg agttttgcgc attgctttga aaactactgc tagaatttaa agcatctccg
     1441 cttgacttct catccgcctt atttaacata tccataaaat cagaatctcc agatgaagaa
     1501 taatcttcaa tctgtttatc cacctgttta tactgaccac taatagcatc gtattcatac
     1561 gagctaatcg ttctataatt tacctgcata gttttctcct ttcaaaatat gcaaaaacta
     1621 tacaagcaaa aagcgttcct ttttatgtaa aaattaatgt tttttaatca tggtgagtag
     1681 gcaaatgctc cacatcaagc tcattgttgg ctataaattc ctccttggct tttttacagt
     1741 tttcatcacg cattttgcgg tattcattgc gaatgatgat ttctttatcg cttagaggtc
     1801 tatcttctaa aaaactgata tgaaaataag tatcatcgct ctttgaataa gttttataaa
     1861 aatctatata gtcaaaataa tccttgccat tatcaaactc tacgacctct tctatataaa
     1921 tcgtaggtcc aaaacccttg tgattttgcg tatagtgccc aaaacctgcg ctgtattgaa
     1981 ttctaaattt agccatcatt ttctcctaaa aattcttgat aagttccacg aaaatccgta
     2041 agcttaccat tttctaaatg ccaaattcta ttagcaaaag cagaaactaa ctccctatcg
     2101 tggctgatac aaagcactac acctttgaaa ttatacaaag cttcacctag tgcaataata
     2161 ctttcaagat ctaaatggtt atcaggctca tctaaaagca agaaatttgg acgctctagc
     2221 attaaacgag aaagcattaa acggtgtttt tcacccccac ttaaacttgc tgccatcttt
     2281 tcttgatcac tgccactaaa aagcattcta cctaaacact tacggatttc atctagatct
     2341 ttaaattttt cactcatcaa ccattcataa agtttcaaat tttcacaaat taaattactt
     2401 gtatcttgag gaaaatatcc aagctctata gttgccccaa gatgtatgga tccactatct
     2461 ggacttatag catgggcgat gatttttgcc aaagtacttt tgcccacacc atttgcccca
     2521 atcaaagcga ttttatcatt tttttctatt tttagctcca aatttgaaaa caattgttta
     2581 tcataagcct tgcctatacc tttaatttct aaaacttcat tacctatttc acgattagtt
     2641 ctaaatacta tactaggatc tctacggctt gaaattttaa tctcttcaag ctctagtttt
     2701 tcaagcgcct tagcacggct tgtggcttgt tttgctttag aagcatttgc actaaaacgg
     2761 cgaatgaaat tttctaattc ttctctttct tttaaggttt tatcgcgttt aagctcagct
     2821 tgttttgcca aaagcgttga agccatatac caatcatcat aatttcccgc aaaatcacga
     2881 atttgtttaa aatccacatc caaaatcctt gtgcaaattt tatttaaaaa atgcctatca
     2941 tgagagatga caaccaaagt tccttcatgt cttaaaagtt cattttcaag ccaagaaatc
     3001 gcctctaaat caaggttatt tgtaggctca tctaaaaaaa gcgcatcggc acctaaaaac
     3061 aaaacttgag ctaacaaaac tttaaattta tccgcacttt gtaaggtgct cattaaagca
     3121 tcgaaatctt taatctttaa agaacttaaa attttttcac aacgtgtttc acaatcataa
     3181 tttggatctt cttcagccgt tattatctca agctcaccta aacgctcatt gatctcatca
     3241 gtaaattcct cgctcatata aagcttttct ttttctttta aggcctcata taaacgctta
     3301 tttgcacaca tcactgcatc tttgatggtg tagttttcaa aagcaaattg atcctgtcct
     3361 aaaactgcga ttttcaagcc ttcatcaaat actatttcac cactacttga ctcaatttct
     3421 cctgaaagaa ttttcaaaaa agtcgatttt cccgcaccat tagcaccgat aagtccgtat
     3481 ctttgtcctc gaacaagttt taaattaaca ttttcaaata aaagctgatt tgcaaaacgc
     3541 atagtaagat tttttacttc aaccatgatt ttccttaaat tttttactta taaaaatttt
     3601 taagaaattg tatcaaaaaa agacttgaaa ttaattgagt ataaaatatt agtaagtcat
     3661 gaaattaatt ctattgactt actttaataa aaatattatt ggaaatctcc attgatataa
     3721 gttatatctg taattttcac ttgatttatg ttagaaacct tataaacaac actccaaaga
     3781 ccttttctct gttccccttt taatgcagca ttaatcgtag ccatacaaga atcaaaatta
     3841 agatcaaaat ttgaaatgga attaacttcg atcatatcag tgtaatttac cattccatca
     3901 tgcttggcta tttccttgag gccttttgca taatcttcat aatcaatccc ttgggcttta
     3961 agtccggata attcataaag atttttaaaa atttcactag gaattttttc tttaagattt
     4021 gaaacaactg ccgtattatc acatttgtct aatgagttgg cctgaagcaa ggcaaacccc
     4081 attaagaaaa ataaaattac ttttttaaac atatctaaac tcctctaatt tttaggtttt
     4141 gctactaaaa taccattttt atattcttct tctcttacaa tctccccttt tttatattct
     4201 ctaaagactc catttttaag tccattttta taattttctt cgtcttctaa ggcgccattt
     4261 tcatcataac gcttttgtac tccatcaaat ttacctttat tatcaaaatt ataatcacac
     4321 attaaagttc cattttcata atattccttg taattacctt caaattctgg cataccatct
     4381 tcattatagc caagtagttt tccctttgct ctcatatttc cattctcata atagcttgca
     4441 aaatcaccat atccgcgatt atctttaaaa tgcacctcct caagtaattg cccatttcta
     4501 gaatattccc tgctaattcc atcttttttt ccatttttat aattttcttc agctcttagc
     4561 tgaccattgt cataaaaagc tctttttaac ccatgtattc ttgaatcttt attataggga
     4621 atttcttctt ttaaatttcc atttggatat ttgttttgct gaactctagc cacatcgcta
     4681 ggttgtccag gaaaatcact tccacaacca cttaacaaca tcgcaattaa actacaaatg
     4741 cttaaaaatt ttgtcatttt ttctcctatt tctcattttt ttctttaata ataatagttt
     4801 gcttaaaact tcccgtaaaa gaccatatta aacaaacaag ccaaacaata atagtccaac
     4861 caaaaaacaa atttagcaaa gaaattatca gccaattaga atgctttctg ctcaaaccaa
     4921 taatagcggg caac
//
LOCUS       DAPIWJ010000101         4926 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.103, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000101 DAPIWJ010000000
VERSION     DAPIWJ010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4926)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4926)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4926
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.103"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            73..1068
                     /locus_tag="RJ259_001527"
     CDS             73..1068
                     /locus_tag="RJ259_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDV7367208.1"
                     /translation="MKKILSLSVASLALCGALNAADLKIAGSSTVYPFTSFVAEEYAS
                     IKNTKTPIVESLGTGGGFKVFCEGTTDISNASRPMKLSEFETCKKAGVTDIVGIMIGY
                     DGIVLAQNKTNAPLNITKKELFLALAKEIPQNGKLIPNPYTNWNQINKNLPNRKISVY
                     GPPSSSGTRDTIEELVMSDVSKKIPEYKGEYKTIRQDGAYIPSGENDNLIVSKLTIDK
                     DAFGIFGYSFLVSNSDKINAANIDGVTPSEESIADEKYELARSLFIYINAKKNPKEAF
                     EFAKIYMSDDLAKSGGELEKIGLVPLSDDKLKASQKHVEDRKILNDELVKAGKVF"
     gene            1078..1992
                     /gene="pstC"
                     /locus_tag="RJ259_001528"
     CDS             1078..1992
                     /gene="pstC"
                     /locus_tag="RJ259_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HDV7367209.1"
                     /translation="MLKEKIIKFALFLCAFVSVIVSFAIMLTILIEALKFFQKESVVT
                     FLFSSQWAADAAFMNADGTSKQGVFGALSLFWGTFYISLIAMLTALPLGVMCAIYLGV
                     FAGKKSKNYLKPILEIIAGIPTVVFGFFAAIVVAPFIVWFFSLFGIQASFQSALGAGF
                     IMGIMIVPIVASLSQDCIEAVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLL
                     GLSRALGETMIVVMAASLRPNLTLNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSL
                     GLVLFVITLIINMFSVYLINRFHKRKNL"
     gene            1989..3077
                     /gene="pstA"
                     /locus_tag="RJ259_001529"
     CDS             1989..3077
                     /gene="pstA"
                     /locus_tag="RJ259_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HDV7367210.1"
                     /translation="MKKLFKKRQKASKSFKRLCKMGLYINLIFLCIFLGSVAYLGFPA
                     FKQTYIFVEANRNSPAYDLLSRAEQRKIRTGQIAEKSWLLANSEVDQYMKQKYNRLSE
                     KQRTLVDDLVQKGEIELKFNSNFFLNGDSKSPENSGILSSVIGTLLVMLVCMVVSVPI
                     GVAAAIYLEEFAPQNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGMPRSSALVG
                     GLTLAIMSLPIIIVSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGS
                     ILTLAGAIGETAPLMIIGMIAFIPDVASSIFDPTSVLPAQIYSWSAMPERAFLERTAA
                     GIIVLLGLLVVLNLSAILLRKYFQGKLK"
     gene            3074..3814
                     /locus_tag="RJ259_001530"
     CDS             3074..3814
                     /locus_tag="RJ259_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HDV7367211.1"
                     /translation="MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTF
                     LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA
                     PKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK
                     PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE
                     LIEFGESKEFFENPKQEKTKAYLSGAFG"
     gene            3875..4926
                     /locus_tag="RJ259_001531"
                     /pseudo
     CDS             3875..4926
                     /locus_tag="RJ259_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856911.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
BASE COUNT         1684 a          628 c          935 g         1679 t
ORIGIN      
        1 ataaaaaatg tttccaaaat gtttccaagt ttttttaaac ttccattact tttttaaagt
       61 taaggagaaa aaatgaaaaa aattctatct ttaagtgtgg caagtcttgc actttgtggt
      121 gctttaaatg cagcagattt aaaaatcgca ggttcatcga ctgtgtatcc ttttacttct
      181 tttgtagctg aagaatatgc ttcgattaaa aatacaaaaa ctcctatagt agagagcttg
      241 ggaacagggg gtggatttaa ggtattttgt gaaggaacta ctgatatttc taatgcttca
      301 agacctatga aattaagcga atttgaaact tgcaaaaaag caggggtaac tgatatagta
      361 gggattatga taggttatga tggtatagtt ttagctcaaa ataaaaccaa tgctccatta
      421 aatatcacaa aaaaagaact tttcttagca ttagcaaaag aaattccaca aaatggaaaa
      481 cttataccaa atccttatac aaactggaat caaatcaata aaaatttacc aaatcgtaaa
      541 attagtgttt atggtccacc atcaagttca ggaacaagag atactataga agagcttgta
      601 atgagtgatg tgtctaaaaa aattcctgag tataaaggcg agtataaaac catacgccaa
      661 gatggtgctt atatcccaag tggcgaaaat gacaatctaa tcgtttcaaa acttactatt
      721 gataaagatg cttttggaat ttttggttat agctttttgg tgagcaattc agacaaaatc
      781 aatgctgcta atatcgatgg tgttacgcca agcgaagaaa gcatcgcaga tgaaaaatac
      841 gaacttgcaa gaagtttgtt tatttatatc aatgctaaga aaaatccaaa agaagccttt
      901 gaatttgcaa aaatttatat gagtgatgat ttggcaaaaa gtggtggaga gcttgaaaaa
      961 ataggacttg ttcctttaag tgatgataaa ttaaaagctt ctcaaaaaca tgtagaagat
     1021 agaaaaattt taaatgatga gcttgtaaaa gctggaaaag ttttttaagg aaaaactttg
     1081 ctaaaagaaa aaataatcaa atttgcactt tttttatgtg cttttgtaag cgtgatagta
     1141 agctttgcta tcatgcttac aattttaatt gaagctttaa aattctttca aaaagaaagt
     1201 gttgttacct ttttattctc aagtcagtgg gcagctgatg cagcttttat gaatgcagat
     1261 ggcacgagca aacaaggtgt ttttggagcg ctatcgcttt tttggggaac tttttatatt
     1321 tcattgattg ctatgctaac ggctttacct ttaggggtta tgtgtgctat atatttaggt
     1381 gtttttgctg gcaaaaaatc taaaaattac ttaaaaccta ttttagaaat cattgcaggg
     1441 attcctactg ttgtttttgg attttttgcg gctatagttg tagcgccttt tatagtgtgg
     1501 tttttttctt tatttggcat acaagcaagc tttcaaagtg ctttaggcgc aggttttatc
     1561 atggggatca tgatagtacc tatagtggct tcgttatctc aagattgcat tgaagcagta
     1621 agcgagaaaa ggattaatgg cgcttatgct ttaggtatga caaaaaaaga agtggttttt
     1681 gccgtgattt tacctgaggc tattcctggt atagttgcag cttgtctttt aggactttca
     1741 agagccttag gcgaaactat gatagtggtg atggcagctt ctttgcgtcc aaatttaact
     1801 ttaaattttt tagaagatat gacaacggta acggtaaaaa tcgtagaagc tttaagtgga
     1861 gatcaagctt ttgatagttc tttggcttta agtgcttttt ctttaggttt ggtgcttttt
     1921 gtcatcactt taatcatcaa tatgtttagc gtttatctta tcaatcgctt tcataaaagg
     1981 aaaaatttat gaaaaaactt tttaaaaaaa gacaaaaagc ttcaaagtct tttaaaagac
     2041 tttgtaaaat ggggctttat attaatttaa tttttctttg tatcttttta ggaagtgtgg
     2101 cttatcttgg atttcctgct tttaagcaaa cctatatttt tgtagaggct aatagaaatt
     2161 ctcctgctta tgatctttta tctcgcgcag aacaaagaaa aataagaaca ggacaaatcg
     2221 ctgaaaaatc ttggcttttg gcaaattcag aagtagatca atatatgaag caaaaatata
     2281 atcgccttag tgaaaaacaa agaactttag tcgatgatct tgtgcaaaaa ggcgagatag
     2341 agcttaaatt taatagcaat ttctttttaa atggggactc aaaatctcct gaaaattcag
     2401 gaattttatc ttcagttata gggactttgc ttgttatgct tgtttgtatg gttgtgagtg
     2461 ttcctatagg cgttgcagcg gcaatttact tagaagaatt tgcaccacaa aatatcctta
     2521 cacattttat agaagtgtgt attaacaacc ttgcaagtat tcctagtatc ttgtttggac
     2581 ttttaggact tggagtgttt atcaatcttt ttggaatgcc tcgttcaagt gctttagtgg
     2641 gtgggcttac tttggcgatc atgagtttgc ctattatcat tgtttcaacc aaagcggcct
     2701 taaaaagtgt ggatatcaat atgaaaaatg ctgcttatgc cttaggtatg acaaaggttc
     2761 aaatggtaaa aggtattatg ttacctttgg ctatgcctat gattttaaca ggttctattt
     2821 tgactttagc aggggctata ggcgagactg cacctttgat gattatcggt atgatagcct
     2881 ttatccctga tgtagctagt tcgatttttg atccaactag cgttttacct gctcaaattt
     2941 actcatggtc tgctatgcca gagcgtgcat ttttagaaag aacagcagcg ggtattattg
     3001 tgcttttagg acttttagtt gtgttaaatc ttagtgcaat attattaaga aaatattttc
     3061 aaggaaaatt aaagtgatag caaaaacaac aaatttaaat ttattttatg gaaaaaaaca
     3121 agctttattt gatatcaata tgcaaataga gcaaaacaaa attactgcac tcatcggtgc
     3181 ttcaggatgt ggtaaatcca cttttttgcg ttgttttaat agaatgaatg ataaaattgc
     3241 aaaaatcgat ggtttagtgg aaattgaagg aaaagatgtt aaaaatcaag atgtagtagc
     3301 cttgcgtaaa aatgtaggca tggtttttca acaacccaat gtttttgtaa aaagcattta
     3361 tgaaaacatc tcttatgcac caaaacttca tggtatgatt aaaaacaaag atgaagaaga
     3421 agctttggtg gtggattgct tgcaaaaagt ggggcttttt gaagaggtta aagataaatt
     3481 aaagcaaaat gccctagctc tttcaggcgg acaacaacaa cgcctttgta tcgcaagagc
     3541 tttagcgatc aaaccgaaac ttttgctttt agatgagcca acttctgcac ttgatcctat
     3601 aagttcaggc gtgattgaag agcttttaaa agaattaagc cataatcttt ctatgatcat
     3661 ggttacgcat aatatgcaac aaggcaaacg cgtagctgat tatacagcat tttttcatct
     3721 tggagagctt atagaatttg gtgaaagtaa agaatttttt gaaaatccaa aacaagaaaa
     3781 aaccaaggct tatttaagcg gtgcttttgg ataagattta ttttttggaa atttgatgat
     3841 ataattaatt aaaaatttca aaaaaaggtt taatatgatt ataaaccaaa tttattctat
     3901 agattcttgt gatgatgtag aattaaatat caaaagggga agtaaattag aatttagatt
     3961 gacttatgat gatagtaaag aaatagaagc tattgtttgt attatatccg ggttaggtgg
     4021 agatatagat gataatttat atatagaaga gtattgtgca agaaactata atgtggctgt
     4081 tttaagtgta aattatcatt gtataggtaa tcgtcctcaa actggagcgt cattttatat
     4141 taatgaactt gatagattga ttttaaagac aagcttagaa gcaattggaa tacaacttcc
     4201 tgtagatatg caaaatttaa aaacatacga tgaattttat tgtgtagtgg attttgttaa
     4261 taaatttata gagaaattaa aaaaagaaaa agaattgagt gaagattatt gtctgtattt
     4321 aagcgtaggt cttgaaccaa ctaaaaatga atatcaaaat tatggtatta tgcaggcaat
     4381 ggatattata aatgctattt tatatataaa tatcaacctt ccttttaaag tttctaatat
     4441 gtcgaccgtg agtaggatgg gggggtataa agactatatt aataggtgtt tcgcatggag
     4501 gatatttagc caatttatgt gcaaaaatct ctccttggaa tattgatgtt gttttagata
     4561 attcttctaa tgtgactttg gataatgatt tatggagatt tataggcttt ggaagggaga
     4621 tagattatgt aaagtattgt agtgtaggta ttacatatat gtttaagaat attaaactag
     4681 cagcttttga taaaacttat tggactacga ataaacaatc tccatattat ttttcaaatg
     4741 caagaaaaat agtaagagaa ccattgaata aagaacattt aaaaattcaa agtttatatc
     4801 caaaaccaaa atatatcgct tatcattcta aatttgatca gtatgtttta ctagaaaaaa
     4861 gagaaaatta ttttaatatt ttaagagaat tggggtttga ggttgatttt atcaaaataa
     4921 ctgatg
//
LOCUS       DAPIWJ010000102         4805 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.104, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000102 DAPIWJ010000000
VERSION     DAPIWJ010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4805)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4805)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4805
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.104"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..527
                     /locus_tag="RJ259_001532"
     CDS             <1..527
                     /locus_tag="RJ259_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HDV7367212.1"
                     /translation="IFASTHKDEEELLLDHFKLEENEKLIIAPRHPERFKEVENLLLN
                     KGLEFEKFSSLKDENKKFSKKILLLDALGELVNFYAISDVVVLGGSFIEGIGGHNPIE
                     AAYFDNVLISGKFIHNQKVLFEEVENVYFCEKLKDLNDKVHYLNLKAKISKKENLDLI
                     IQTIQKGIDARKSL"
     gene            508..1260
                     /locus_tag="RJ259_001533"
     CDS             508..1260
                     /locus_tag="RJ259_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDV7367213.1"
                     /translation="MQEKAYKLLALQEKISNREAKDLIDKGCVFSYGKKVVVARALMS
                     DKARFNVIKAKNPQIIFEDDKIIAINKPYAYVSEDLEKKFNAKLLNRLDKETSGVILL
                     CKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEVEVNEPIFTIKVKGGALSKVSKDG
                     LSALSIITPIMMQSKKTLAKIVIQTGRTHQIRVHAKFIKHGVVGDEKYAKISSDRMYL
                     HSYEIKIFNYHFRANLDSGFAKFGFDIKNLDF"
     gene            1328..2665
                     /gene="ffh"
                     /locus_tag="RJ259_001534"
     CDS             1328..2665
                     /gene="ffh"
                     /locus_tag="RJ259_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HDV7367214.1"
                     /translation="MFELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHK
                     VTKELLTLIEEDAKQNGIGQKQFLNAIKINLENILSVNGKNQGFVFASKPPTVVLMAG
                     LQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLIQLCEANEIELFFIENEK
                     DPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMDELRAVKDVLNPDEIFYVADAM
                     SGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADL
                     EVFIPDRIVSRIMGEGDLATLAEKTAAIIDEKEAKKLNQKIKKGEFNFNDFLNQMESI
                     KKLGSMKSLIGMIPGLGGMANAVKDIDLDNSKEIIRIKAMISSMTPKERENPDLLNNA
                     RKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSGKKGMESLTQMMSQARRQF"
     gene            2730..2957
                     /gene="rpsP"
                     /locus_tag="RJ259_001535"
     CDS             2730..2957
                     /gene="rpsP"
                     /locus_tag="RJ259_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HDV7367215.1"
                     /translation="MTVIRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVE
                     PEVIKVDAERLAYWKSVGAKLSDKVASITSK"
     gene            2960..3202
                     /locus_tag="RJ259_001536"
     CDS             2960..3202
                     /locus_tag="RJ259_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HDV7367216.1"
                     /translation="MVENFLREYAKLIADYPEQIDTQKIELSENFFEIVLFAHKVDTG
                     KLIGKNGKMINAIKTVISAYKSKDASSYRVTVKALE"
     gene            3195..3734
                     /gene="rimM"
                     /locus_tag="RJ259_001537"
     CDS             3195..3734
                     /gene="rimM"
                     /locus_tag="RJ259_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA processing protein RimM"
                     /protein_id="HDV7367217.1"
                     /translation="MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKN
                     TKEMLKIKHYNANNSTVLFENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFD
                     ILECEVFEEDKRLGKVVDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNID
                     IEKRQIFCTQDAFLILENS"
     gene            3731..4435
                     /gene="trmD"
                     /locus_tag="RJ259_001538"
     CDS             3731..4435
                     /gene="trmD"
                     /locus_tag="RJ259_001538"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HDV7367218.1"
                     /translation="MKFSFVSLFPNLMEFYFQDSILARAKEKKLFKLNFYNPRDFSKN
                     SYHKVDDYKIGGGAGLLMQAEPMYEVLRSIQEKKENPYFIFLNPSGKTFNQKDAKRLS
                     KKEHIVFVCGRYEGIDERVLEIFANEVFSIGDFILTGGELPALVMCDAILRNVNGVLG
                     NMESLEEESFENNLLEAPAFSKPFIFEKKNKKFYTPSEFLKGNHARIASLKTTLASCK
                     TKFFRPDLFLEHERKK"
     gene            4446..4802
                     /gene="rplS"
                     /locus_tag="RJ259_001539"
     CDS             4446..4802
                     /gene="rplS"
                     /locus_tag="RJ259_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HDV7367219.1"
                     /translation="MKNKYIEQFEAKQIEGKNVPDFRAGDTLKLAIRIKEGDKTRIQN
                     FEGICIARRGNGVSETFIVRKIGANNVGVERIFPIYSESLESITVLRRGRVRRARLFY
                     LRDRRGKAARIKELKK"
BASE COUNT         1786 a          520 c          930 g         1569 t
ORIGIN      
        1 tcatttttgc cagtacgcat aaagatgaag aagagctttt gcttgatcat tttaaactag
       61 aagaaaatga aaaactcatt atcgccccac gacaccctga acgttttaaa gaagttgaaa
      121 atttgctttt aaacaaaggt ttagaatttg aaaaatttag ttctttaaaa gatgaaaata
      181 agaaattttc taaaaaaatt ttgcttttag atgctttagg ggagcttgta aatttttatg
      241 caatttctga tgttgttgtg cttggaggtt ctttcataga aggcatagga ggacacaatc
      301 ctatagaagc ggcatatttt gacaatgtat taatcagtgg gaaatttatt cacaatcaaa
      361 aggttttgtt tgaagaagtg gaaaatgtat atttttgtga aaaattaaag gatttaaatg
      421 ataaagttca ttatttaaat ttaaaagcta aaatttccaa aaaagaaaat ttagatctta
      481 tcatacaaac tatacaaaag ggaattgatg caagaaaaag cttataaact cttagctttg
      541 caagaaaaaa tttcaaatcg tgaagctaaa gatttgattg ataagggttg tgttttttca
      601 tatggaaaaa aagttgtggt tgctagagct ttgatgagcg ataaggcaag atttaatgtg
      661 ataaaagcta aaaatcctca aattattttt gaagatgata agattattgc tattaataaa
      721 ccttatgctt atgtgagtga agatttagag aaaaaattta atgccaagct tttaaatcgt
      781 ttagacaaag aaacaagtgg tgtgattttg ctttgtaaag atgaagattt tagaaagctt
      841 tgtatagaag aatttaaaaa acacagggtt tataaaagtt atattgcggt tttagatggg
      901 gttttggctg aagaggttga agtgaatgaa cctattttta ctataaaagt aaaaggcggg
      961 gcgttaagta aagtttcaaa agatggttta agtgccttaa gtatcattac tcctatcatg
     1021 atgcagtcaa aaaaaacctt agcaaaaata gttattcaaa caggtagaac tcatcaaatc
     1081 agagtgcatg ctaaatttat aaaacatggc gttgtaggtg atgaaaaata tgctaaaatt
     1141 tcaagcgata gaatgtattt gcatagctat gaaattaaaa tttttaatta tcattttagg
     1201 gctaatttag atagtggttt tgcaaaattt ggctttgata taaaaaattt agatttttaa
     1261 agccatttaa gaaaaaattt tgtataatgc aaggtttaat ttaaaaattt tatagaaagg
     1321 tgataaagtg tttgagttag tcagcgaatc ttttaaatca gcgattaata aattacgttt
     1381 tgttgatgat gaaaaagcac ttaagaacgc tttagaaacc ttaaaaaaag ctcttttaaa
     1441 agcagatgtt caccataagg taactaaaga gcttttgact ttgatagaag aagatgcaaa
     1501 gcaaaacgga ataggtcaaa aacaattttt aaatgccatt aaaataaatt tagaaaatat
     1561 tttaagtgtc aatggcaaaa atcaaggttt tgtttttgct tctaaacccc caacagtagt
     1621 tctaatggca ggtttgcaag ggggcggtaa gactacaagc actatcaaac ttgcaaatta
     1681 tttaaaatta cgcaataaaa aagttttagt tgcagcttgt gatttacagc gtttagcggc
     1741 agtggagcag ctaatacaac tttgtgaagc taatgaaatt gaacttttct tcatagaaaa
     1801 tgaaaaagat cctattaggg ttgctaaaga ggctttaaaa aaggctgaaa gttctatggt
     1861 ggatgttttg cttgtggata ctgctggacg tttggctata gatgaagctt tgatggatga
     1921 gttaagagca gttaaggatg tcttaaatcc tgatgagatt ttttatgttg ctgatgcaat
     1981 gagtggtcaa gatggggtta agactgctgc tagttttaat gaagttttag gtatcagtgg
     2041 ggtaatttta tcaaaatttg atgcagatac taaaggtgga gtagccttag gtatagcaaa
     2101 acaaatcggt attcctttaa gatttattgg tgtgggtgaa aaagtagcag atttagaagt
     2161 ttttatacca gatcgtatag taagtcgtat tatgggtgag ggtgatttgg caactttagc
     2221 tgaaaaaact gctgcgatta ttgatgaaaa agaggctaaa aaactcaatc aaaaaattaa
     2281 aaaaggtgaa tttaatttta atgattttct taaccaaatg gaaagtatta aaaaattagg
     2341 aagtatgaag tctttaatcg gtatgatacc aggacttggt ggaatggcaa atgcggtaaa
     2401 agatatagat ttggataatt ctaaagaaat catacgcatt aaagcaatga tttcttcaat
     2461 gactccaaaa gaaagagaaa atcctgattt attaaataat gctagaaagc gtcgtatagc
     2521 agagggagca ggtctttctc aggtagaagt caatcgtttt ttaaaacaat ttagcaatgc
     2581 agcaaaactt gcaaaaagat tttcaggtaa aaaaggaatg gagagtttga cacaaatgat
     2641 gagtcaagct agaagacagt tttaaatttt atttataaat actttttata gtatctataa
     2701 ataaaatttt taatttttaa ggagtgtaaa tgacagttat tagacttaca agaatgggta
     2761 gaaccaaaag accattttat cgtattgtag ttacggacag tagaaaacgt cgtgatggtg
     2821 gttggataga aagtattggg tattataatc ctatggtaga acctgaagta attaaagttg
     2881 atgcagagcg tttagcttat tggaaaagcg ttggtgcaaa acttagcgat aaagttgctt
     2941 ctatcactag caaataatca tggtagagaa ttttcttaga gaatacgcaa aattaattgc
     3001 agattatcct gaacagattg atactcaaaa aattgaatta agtgaaaatt tttttgagat
     3061 tgttcttttt gcacataagg ttgatacagg taagcttata ggtaaaaatg gaaaaatgat
     3121 caatgctata aaaaccgtaa tctctgctta taagagcaag gatgcaagtt cttatagagt
     3181 aacggtaaaa gcacttgagt gaaaaagatt ttgttcaagt tgcaaaactt ggtaaaactg
     3241 tgggtcttaa gggttatgta aaattgcata acctgagcga cttttcttct caatttaaaa
     3301 aagatgctac tttttttata aaaaacacca aagaaatgtt aaagattaag cattataatg
     3361 caaacaattc tactgtttta tttgaaaatt atgaagatat agaaaaggcc aaagaattaa
     3421 ctaatcttat tctttttcag agtatcgaga aaagcagaca aacttgtaaa ttaaaaaaag
     3481 atgagttttt ttattttgat attttagagt gtgaagtttt tgaagaagat aaaagattag
     3541 gtaaagtggt tgatatcttg gaaactggag cttcttattt atttgaaatt caaagtgatg
     3601 aaaaatgggt tgaaaaaaaa tatcctaaaa tattttttat tccatatttg gataaatttg
     3661 ttaaaaatat agatatagaa aaacgacaga ttttttgcac gcaagatgct tttttaattt
     3721 tagaaaattc atgaaattta gtttcgtttc tttgttccct aatcttatgg aattttactt
     3781 tcaagattct atacttgcaa gagcaaaaga aaaaaaactt ttcaaactta atttttataa
     3841 tccaagagat ttttctaaaa attcttatca taaagtcgat gattataaaa taggtggtgg
     3901 agctggactt ttgatgcaag ctgaacctat gtatgaggtg ctaagaagta ttcaagaaaa
     3961 aaaagaaaat ccctatttta tttttttaaa tccaagtggt aaaaccttta atcaaaaaga
     4021 cgccaaacgc ttaagtaaaa aagaacatat agtttttgta tgtgggcgct atgaaggtat
     4081 agatgaaaga gtgcttgaaa tttttgcgaa tgaagttttt agtatagggg attttatttt
     4141 aactggagga gaattacctg cgcttgtaat gtgtgatgca attttaagaa atgttaacgg
     4201 ggttttagga aatatggaaa gtttggaaga agaaagcttt gaaaataatt tactcgaagc
     4261 gcctgctttt tcaaaacctt ttatttttga gaaaaaaaat aaaaaatttt atactccttc
     4321 agagttttta aagggtaatc acgctagaat tgcaagttta aaaactactt tggcgtcttg
     4381 caaaacgaaa ttttttcgtc cagatttatt tttagagcat gaacgcaaaa aataagggat
     4441 tttttatgaa aaataaatat atagaacaat ttgaagcaaa acaaattgaa ggtaaaaatg
     4501 ttccagattt tcgtgctggt gatactttaa agcttgcaat tcgcatcaaa gaaggagata
     4561 aaacaagaat ccaaaatttt gagggtattt gtattgctag aagaggtaat ggcgtaagtg
     4621 aaacttttat cgtgcgtaaa attggcgcta ataatgttgg cgttgagaga atttttccta
     4681 tttatagtga aagtttagaa agtattactg ttttgcgtcg tggtcgtgta cgccgtgcaa
     4741 gattattcta cttaagagat agacgcggta aagcagcgcg tattaaagag cttaaaaaat
     4801 aattt
//
LOCUS       DAPIWJ010000103         4778 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.105, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000103 DAPIWJ010000000
VERSION     DAPIWJ010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4778)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4778)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4778
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.105"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(10..768)
                     /gene="map"
                     /locus_tag="RJ259_001540"
     CDS             complement(10..768)
                     /gene="map"
                     /locus_tag="RJ259_001540"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HDV7367220.1"
                     /translation="MIELKKPDEIEKLRIANQIVAKTLNFLENEIKIGMSLKQIDKMA
                     EDYILSLGAKPSFKGLYGFPGAICTSLNQVCIHGIPDDKIIKEGDILGLDVGSLIDGY
                     YGDAARTIAIGEVSPADKALISCAKDALYHAIDIIRDGMRFKELSAALGEFIHVRGFV
                     PLRGYCGHGIGRKPHGEPEILNYLEKGASAKSGPKIKNGMVFCIEPMICQKDGTPKHY
                     NGKWDAGSIDGLNAAHYEHCVAVINGRAEILSMI"
     gene            complement(770..1522)
                     /locus_tag="RJ259_001541"
     CDS             complement(770..1522)
                     /locus_tag="RJ259_001541"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HDV7367221.1"
                     /translation="MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDK
                     DTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIK
                     ALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQ
                     SAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENID
                     LKNHKAKLHFYASSDVESLKNTAKIWLNLLRK"
     gene            complement(1524..1982)
                     /locus_tag="RJ259_001542"
     CDS             complement(1524..1982)
                     /locus_tag="RJ259_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDV7367222.1"
                     /translation="MRHIFFIITIIFFISGCSFYQNLNYRPSYNTNKEARLKVIANEW
                     KKTPYVLGGTSKKGADCSGFTQSALAQLNIRIPRTTKTQLGSGRKVSKSKLQTGDLVF
                     FKTGRGPNGMHVGIYMSKGKFIHLSTKDGVKEVELNSSYWKARYIGARRY"
     gene            complement(1991..3160)
                     /gene="nhaA"
                     /locus_tag="RJ259_001543"
     CDS             complement(1991..3160)
                     /gene="nhaA"
                     /locus_tag="RJ259_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HDV7367223.1"
                     /translation="MNNIVHKLKTLVLNEAFGGVLLIVCTLLALLVQNGSFSEHYREF
                     LNLKVGFSVGEFELNKPFLLWINDGLISIFFFAIGLELKKEFLHGDFKNPKNIVLPFM
                     AALGGILIPAMLFALVNIGDAYTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLL
                     SLAIFDDVGAILIIAIFYTTKLSIAAFVIAGLAILVMLILNLLGITRKSFYFICSVIL
                     WISVLKSGVHATLAGIVTAFFIPMQTKNGEAFLEEIYESLKFWIAFIILPLFAFANAG
                     VNLSNIDIGAIFSGVSIGIFLGLFVGKQVGVFLFSYLAIRFKFAALPQGSNLKQLYGV
                     CILTGIGFTMSLFIDGLAYEVSDIFNYADNLAILIASFCSGIWGFIYLKFFTTRS"
     gene            complement(3157..4305)
                     /gene="nhaA"
                     /locus_tag="RJ259_001544"
     CDS             complement(3157..4305)
                     /gene="nhaA"
                     /locus_tag="RJ259_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HDV7367224.1"
                     /translation="MQMIKKMVLSETFPGILLIFFTFLALLCKNSSLSVIYTDFFHAN
                     FTVGFDHFQISKSLDLWINDGLIAIFFLCIGLELKYEILRGQLKNIRAVSLPIFGALG
                     GMITPALIFIAINYSHDFAMKGWAIPTATDIAFAVGILMLLGNKIPTSLKLFLLSLAI
                     FDDLGAIVIIALFYTDQLSALAIIICLFCIFALLLLNYYHITHLSLYVLVGVVLWIAM
                     LKSGVHATLAGVIISLFIPLDTKNKKPYLHEVLKDLNPWVVYFILPLFAFANAGIDIR
                     DMHLGSVFSPVSLGIILGLFLGKQLGVFTFCFIAIKLKLAKLPENIKYGKFYGICILT
                     GIGFTMSLFIDGLAYKNSDIFEYADKLAILVASFLSAIVGFIYLKIVK"
     gene            complement(4448..4630)
                     /locus_tag="RJ259_001545"
     CDS             complement(4448..4630)
                     /locus_tag="RJ259_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfB family protein"
                     /protein_id="HDV7367225.1"
                     /translation="MVSDVSMGNVNLMTAVNTSVLKKSMDTNEALMNELIEGMEGVSQ
                     ASAPQASSSSGLDIYA"
BASE COUNT         1802 a          907 c          583 g         1486 t
ORIGIN      
        1 aatttaatat catatcatag aaagaatttc agcacgccca ttaatcacgg caacacaatg
       61 ttcataatga gccgcattca gcccatcaat acttccagca tcccattttc cattataatg
      121 ctttggtgtt ccatcttttt ggcatatcat aggctctatg caaaacacca ttccattttt
      181 aattttaggg ccactttttg cactcgcacc tttttctaaa tagtttaaaa tttcaggctc
      241 tccatggggc tttcgtccta taccatgccc gcaatatcca cgaagcggga caaaacctct
      301 tacatggata aattcgccta aagcagctga aagttcctta aaacgcattc catcacgaat
      361 aatatctata gcatgatata acgcgtcttt agcacaagag attaaagctt tatcagcggg
      421 tgaaacttct cctatagcaa tagttcttgc tgcatcccca taatacccat caatcaaact
      481 tcccacatca agacctaaaa tatcaccctc tttgataatt ttatcatctg gaattccatg
      541 gatacaaact tgatttaaag atgtgcaaat ggcacctgga aaaccataaa gtcccttaaa
      601 tgatggcttg gcgccaaggc ttaaaatata atcttctgcc attttatcga tttgttttaa
      661 gctcattcct attttaattt cattctctaa aaaatttaaa gtttttgcta caatttgatt
      721 tgctattctt aatttttcta tttcatctgg ttttttcaat tctatcattt tatttcctta
      781 ataaatttag ccaaatttta gcagtatttt ttaaagattc aacatcgctt gaagcataaa
      841 aatgtaattt tgctttatga tttttcaaat ctatattttc tctttcttta agaaattcaa
      901 ctatagcatc tcctgaatga attaattttg ttttatcacc aaaatactta cttaaagaac
      961 gtcctagtaa agggaaatga gtgcaagcga gtatcaaagc atctggagtt gtgatatttt
     1021 taaaataata ttccatagca ctttgcaaaa aatctccttc aaaaatacct tcttcaacca
     1081 taggcacaaa aagccctgta gctaaagcat ttatatttgt atatccttga gataacaaac
     1141 gcttttgata ttcttctgat ttaatggttg cttttgtcgc aatgactaaa atttctttat
     1201 ttttatcatg caaagctttt atcgttgctt caacccctgc atcaattacg ccatatactg
     1261 gaaaatgtgc ttttgctctt aaagcatcta aagcataagc actagcagta ttacatgcaa
     1321 tgataagcat atcaatttga aattgttcaa aaaaatccaa tgcttcaaga cagaacttta
     1381 taatagtatc tttatctttc actccataag gaactcttgc ggtatctcca taatagataa
     1441 tttcatcaaa aagcctagct tcatagagag attttaaaac actaagccct cctactccgc
     1501 tatcaaatac acctattttc actttaatac cttcttgctc ctatataacg agccttccaa
     1561 taagaactat ttagctcgac ttcttttact ccatctttag tagataaatg tataaatttt
     1621 cccttgctca tataaatacc aacatgcata ccatttggcc ctctacctgt cttaaaaaat
     1681 accaaatctc ctgtttgcaa ttttgattta gaaacttttc ttccagaacc taattgagtt
     1741 tttgtagtgc gaggtatgcg tatattaagc tgagctaatg cgctctgtgt aaatcctgaa
     1801 caatcagcac cttttttact agttccacct aaaacataag gggttttttt ccattcattt
     1861 gcaataacct tgagccttgc ttctttattt gtgttgtaac taggacgata gtttagattc
     1921 tgataaaaac tacatccact tataaaaaat ataatcgtga tgatgaaaaa aatatgcctc
     1981 atcaatcccc ttaagatcga gtagtaaaga atttaagata aataaaaccc caaatcccag
     2041 aacaaaatga ggctatgaga atagctaagt tatctgcata attaaaaata tcactaactt
     2101 catacgccaa tccatcaata aacaaactca ttgtaaaacc aattcctgta agtatgcaaa
     2161 ccccataaag ttgtttcaaa tttgaacctt ggggcaaagc tgcaaattta aagcggattg
     2221 ccaaataaga aaataaaaat acacccactt gtttacccac aaaaagccct aagaaaatac
     2281 ctatacttac acctgaaaaa attgctccta tatcgatatt ggataaattt actccagcgt
     2341 tagcaaaagc aaataaaggt aaaataataa aagcaatcca aaattttaag ctttcataaa
     2401 tttcttctaa aaatgcttcc ccatttttag tttgcatcgg tataaaaaat gctgttacaa
     2461 ttccagctaa agttgcatgt actccacttt ttaaaacact aatccaaaga ataactgagc
     2521 aaataaaata aaaagacttt cttgttatcc ctaaaagatt taaaataagc attaccaaaa
     2581 tagcaagtcc tgcaattaca aaagcagcta ttgataattt tgtcgtataa aaaatagcta
     2641 taattaaaat agcacccaca tcatcaaaaa tagccaaaga aagtaagaaa atttttaaac
     2701 ttgatggaat gtgcttgccg cacatcatta aaatcgctaa ggcaaacgct gtatctgtag
     2761 ctgtaggtat tgcccaacct tttaaagtat aagcatctcc tatattcacc aaagcaaaca
     2821 acattgctgg tataagtata ccccctaacg cagccataaa aggcaaaaca atatttttag
     2881 gatttttaaa atctccgtgc aaaaattcct tcttaagctc aagccctata gcaaagaaaa
     2941 atatagatat aagcccatca tttatccaaa gtaaaaaagg cttgttaagc tcaaattcac
     3001 ctacactaaa tccgactttt aaatttagaa attctcgata atgttcgcta aaagacccgt
     3061 tttgcacaag caaagcaagc aaagtgcaaa ctataagtaa aacgccgcca aaagcctcat
     3121 ttaaaactaa agtttttaat ttatgtacta tattattcat ttaacaatct taagataaat
     3181 aaaaccaaca atggcactta aaaaactagc tactaaaata gcaagtttat ccgcatattc
     3241 aaaaatatca ctatttttat aagccaaacc atcaataaac aagctcatcg taaaaccgat
     3301 gcctgttaaa atacatatac cataaaattt tccatattta atattttcag gtaattttgc
     3361 aagtttaagt ttgatagcaa taaaacaaaa agtgaaaaca cctaattgtt ttcctaaaaa
     3421 tagtcctaaa ataatcccaa gacttacagg agaaaatact gaaccaagat gcatatctct
     3481 aatatcaatt ccagcattgg caaaagcaaa taaaggtaaa ataaaataaa ctacccaagg
     3541 atttaaatcc ttaagaactt catgtaaata aggtttttta ttttttgtat caagaggtat
     3601 aaacaaagaa atgatcacac cagccaaagt tgcatgcact ccacttttaa gcatagctat
     3661 ccacaacaca acacctacca acacgtacaa agaaagatgg gtgatgtgat aataatttaa
     3721 caaaagcaga gcaaatatac aaaacaaaca aataataatt gctaaagctg aaagctgatc
     3781 tgtataaaac aaagcaataa taacaatagc acccaaatca tcaaaaatag ctaaagagag
     3841 taaaaaaagt tttaaacttg taggaatttt atttcccaaa agcattaaaa tacccactgc
     3901 aaaagctata tcagttgctg taggtattgc ccaacctttc atagcaaaat catgagaata
     3961 attaatagca ataaaaatta aagccggagt aatcataccc cctaaagctc caaatatagg
     4021 taaagataca gctcttatat ttttaagttg cccacgtaaa atttcatatt ttaactcaag
     4081 ccctatacat agaaaaaata tagctatcaa accatcattt atccataaat ccaacgattt
     4141 tgaaatttga aaatgatcaa atcctactgt aaaattagca tgaaaaaaat ctgtataaat
     4201 aacacttaaa gaagaatttt tacataataa agctaaaaat gtaaaaaata taagcaaaat
     4261 accagggaaa gtttcactta aaaccatctt ctttatcatt tgcatccttg ctcctaagta
     4321 aatatttgta aaaatttaat acgataaata aaatggtaaa attataacga aaaaatacta
     4381 aagaaataat tatttaaaaa aacaagccca agataccaaa aagttcttaa gcttgttctt
     4441 aagatattta agcgtaaata tccaaaccac tagagctaga agcttgtgga gcggaggctt
     4501 gagagacacc ttccatacct tcgatgagtt cattcatcaa tgcctcgttt gtgtccatag
     4561 attttttcaa aactgaagta ttaacagcag tcattaaatt aacattaccc atagaaacat
     4621 ctgaaaccat acatcctcct tttagattga gtcttaagac tttatttaaa tcggatgata
     4681 tttttaaaac ttaatatttt ttactaaact ttttaaaatt tttcaaggga accaatatct
     4741 gaaattaaaa atcataaatt ttttaagata aaatccta
//
LOCUS       DAPIWJ010000104         4720 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.106, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000104 DAPIWJ010000000
VERSION     DAPIWJ010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4720)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4720)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4720
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.106"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            271..1258
                     /locus_tag="RJ259_001546"
                     /pseudo
     CDS             271..1258
                     /locus_tag="RJ259_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881065.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
     gene            complement(1293..1934)
                     /locus_tag="RJ259_001547"
     CDS             complement(1293..1934)
                     /locus_tag="RJ259_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HDV7367226.1"
                     /translation="MRNFFCKFVLALVFYSSFALANNSFITLNPSLPSSENSVIEAFS
                     YKCIHCYNHHKFGTLEKLREAFPNLHFKLYPVSLMNGEFSKEMNELFTFAQYKDEQNG
                     KDASYSDSLSHKLADVYFVSYFLNKQRNFSNLDEFYDIGLKAMNVNKNEVLNFLNTPK
                     AKEILSEFQRANDIAKTYGTPAFVVNGKYQINPSAINSMQDLEDLVKKLSNMK"
     gene            complement(2018..2188)
                     /locus_tag="RJ259_001548"
     CDS             complement(2018..2188)
                     /locus_tag="RJ259_001548"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367227.1"
                     /translation="MAFNLSKGVSLGEPKPKIDEFNWGAKEPSVQIQFSGSGTDYQAM
                     PFSVDQAFNPKK"
     gene            complement(2283..2648)
                     /locus_tag="RJ259_001549"
     CDS             complement(2283..2648)
                     /locus_tag="RJ259_001549"
                     /inference="COORDINATES: protein motif:HMM:NF017722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
                     /protein_id="HDV7367228.1"
                     /translation="MLWTICKKWALFLQQILCVQDSKHVRTVCDTIIEVDENGNVVDD
                     WRLYKILDPYRSTIIKTLDQSAVCLNIDASKVGKTLSDEELAKMDESDKFGDIAGIGR
                     NWAHIKGGIKNFKNIYCNL"
     gene            complement(2659..2811)
                     /locus_tag="RJ259_001550"
     CDS             complement(2659..2811)
                     /locus_tag="RJ259_001550"
                     /inference="COORDINATES: protein motif:HMM:NF017722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367229.1"
                     /translation="MNWGNIYNRGIMISFRQNKDGALTWGFGQRYVKYDVWEEKFSIA
                     NYLLSI"
     gene            complement(3218..3325)
                     /locus_tag="RJ259_001551"
     CDS             complement(3218..3325)
                     /locus_tag="RJ259_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arylsulfate sulfotransferase"
                     /protein_id="HDV7367230.1"
                     /translation="MIKMNPYGLSPLTAIIMNNGYVLSDIKKSNGQTIS"
     gene            complement(3490..4290)
                     /gene="dsbI"
                     /locus_tag="RJ259_001552"
     CDS             complement(3490..4290)
                     /gene="dsbI"
                     /locus_tag="RJ259_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HDV7367231.1"
                     /translation="MSCIKMKDKCRNFSLSKWQDTRKPWLILIIVTIGLTCIAHFLFQ
                     EYLFMKPCEQCVYIRFDMLVMAIGGMIALINPANNIIKIFSYSLAFYGIWLGLEHCLT
                     LNHIHEVVHSENPFAGVDGCREIPIYPFNLPLYKWASSWFLPTGECGMDTPVVPENAY
                     NHLNAFQKFFIGTPPDFENGLYSNGWYLIPSLKFMNMAICCLIAFLCCFVVLFAMFIA
                     YVLDKNKPNAKIFALVIVALVLVLKFIGESKNPNQNIASLNQVVLRYS"
     gene            complement(4287..4646)
                     /locus_tag="RJ259_001553"
     CDS             complement(4287..4646)
                     /locus_tag="RJ259_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide isomerase"
                     /protein_id="HDV7367232.1"
                     /translation="MKFPVKLARSIVVCAFLAGISASALSEGKEYVILKNPIANADNY
                     SVGLKAMNVSKADFENFLKTPEAAELLKSYEIANPISQNYGTPAFVVNGKYQIVPSAI
                     NSPEALIEITKELSKQK"
BASE COUNT         1650 a          790 c          676 g         1604 t
ORIGIN      
        1 tccaagattt tgaaaaacgc agttgtctaa gtcttttttt tcttgaatgc ttaaattttt
       61 cattaaccta acctttaaaa atattgcaag attttattat agcgaaaaaa ctttattttt
      121 gctttaaata tataagttct attttaaata taaacgaata ttattttaag gtttaaagct
      181 tttttcttaa aatgtaatta ggttttattg actttttcta aataaagtct tatactgaat
      241 ttaaattacg caaaataagg agggaaattg atgaataaat tttctatagt tttaactttg
      301 ttgttatgtg gaagttgtgc tttagcctta gatccaaatt tggaaaaaaa ctaagagtgc
      361 aacaggtatt gatctgccta ctgccaaatg gaatttacct aaggaattaa atgaagatgg
      421 cactatagat gaaactaaaa tgccaaaaaa ttcagaatat agcaaaatgg ttattttggg
      481 aaataaaatt cttaatgaaa caagcaaata tgtgggtcca caagccaaag atcctaaaaa
      541 aaagatttgc gggaaataat ctttcttgtt caagctgtca tgctaatggt ggaagtgtgc
      601 aaaatcaatc gggttttgta ggaatttggg caagatttcc acaatataat gcaagaggag
      661 ataaagtaat taccttagca gataggatca atggctgttt tgaacgctct acgaatggca
      721 aaagaatgcc tagtgataca cctgaaatga aagccatgct aacttatatg caatggttat
      781 ctcaaggagt tccagtagga gctaagatag aaggacaggg acttaagaag atagatttca
      841 tcttaaaagc agctgatcct aaaaaaggta aggcaattta tatggataaa tgtgccgttt
      901 gtcatcaaga aaatggatta gggcttaaaa atgaggatag cacaggggcg tattatcttt
      961 atccaccact ttggggtgat gatagttata atacaggagc tggaatgtat cgtctatcaa
     1021 agctgcttct tatattaaag aaaatatgcc tcaaggtgcg cctgacttaa gtcttgaaga
     1081 tgcttatgat gtagcagctt acatgaattc acaagctcgt cctattaaag caaatagaaa
     1141 taaagacttt ccagatagaa agattaagcc tttagatatg gatgtaggac cttatgatga
     1201 tagcttttct acaacccaac atcgctatgg accttataca aatatgatca aaaaataatt
     1261 tttaaggcaa tttttattgc cttaaaaatt tattatttca tattacttaa ttttttaact
     1321 agatcttcta aatcttgcat cgaattgatt gcgcttgggt taatttgata ttttccatta
     1381 acaacaaaag caggggtacc ataggtttta gctatatcat tagctctttg aaactcgctt
     1441 aaaatttctt tagcttttgg ggtatttaaa aaatttaata cttcattttt atttacattc
     1501 atagccttta aacctatgtc gtaaaattca tctaaatttg aaaaatttct ttgcttgttt
     1561 aaaaaataag aaacaaaata aacatcagca agtttatgag ataaactatc agaataactc
     1621 gcatctttac cattttgctc atctttgtat tgagcaaagg taaaaagctc attcatttct
     1681 ttggaaaatt ccccattcat taaacttaca ggatagagtt taaaatgtaa atttggaaaa
     1741 gcttctctca gtttttcaag agttccaaat ttatgatgat tataacaatg tatacattta
     1801 taagaaaatg cttctattac actattttca gagctaggta aacttggatt aagggtaata
     1861 aaactattgt ttgctaatgc aaaacttgaa taaaatacaa gagctaaaac aaatttgcaa
     1921 aaaaaattac gcatattata tccttggtta aataaaattt tcaaagataa ttttatttaa
     1981 aaaaaataaa taaacccaaa aataaatttg ggcttattta ttttttagga ttgaatgctt
     2041 gatcaacact aaaaggcatt gcttgataat ccgtgcctga accgctgaat tgaatttgaa
     2101 ccgaaggctc cttagcgccc cagttaaatt catcaatttt aggttttggt tctccaagac
     2161 ttacaccttt actaagatta aaagccattc cagcgttgca ctataaacca taatagaatc
     2221 tttatctggt tcatattgag ttaaagaagt tacaggataa aaccattcat tgccattttt
     2281 atctacaggt tgcaataaat atttttgaaa ttctttattc caccctttat atgcgcccaa
     2341 ttcctaccta tacctgctat atctccaaat ttgtcgcttt catccatttt ggcaagctct
     2401 tcatcgctta aagttttacc cactttactt gcatctatat ttaaacacac tgcactttga
     2461 tctaaagttt tgataatagt acttctataa ggatctaaaa tcttatacaa tctccaatca
     2521 tcaacaacat taccattctc atctacttct ataatagtat cacacactgt gcgtacatgc
     2581 ttactatctt ggacgcaaag tatttgttga agaaataatg cccatttttt gcatattgtc
     2641 catagcatga gaaaaaatct atatagacag caggtaattt gcgattgaaa atttctcttc
     2701 ccagacatcg tattttacat atctttgacc aaatccccaa gttaaagctc catctttgtt
     2761 ttgacgaaaa cttatcataa ttccacgatt gtaaatatta ccccagttca ttagtttatt
     2821 gttatcataa taccatctga tttcaccctt ggtatcttat aataaagaca tttgaatttt
     2881 catcccattc catagcacca cctacaagat tattccatac agattatgag tctttgccag
     2941 attattttcc aggagcatta tttactaaat atagcctatc tgaaaatttt ggatccattt
     3001 ttaatacttt cacattttca aaaagagttc ctctttgatc agtgccttcc gcttggctct
     3061 atgctagccc atggagttgt aattttataa atctcatcaa tgactttttg acttttacca
     3121 tttgcggttt tagtgtaact tacctttact ataagaagga taaagtccaa aaataggaat
     3181 tccaccatac gtcttagcca ttttagaatt cacattatta agaaatagtt tgaccatttg
     3241 atttttttat atcgcttaag acataaccat tattcatgat aatagcggtc aaaggagaca
     3301 atccataagg attcatttta atcataccca tttgtcctta aatttgccaa tctattttca
     3361 ctctactagg accacccatg gccattaaag cattaggtgc aagtagggta gaacccgcca
     3421 aaattgccat gcaaagagtt ttgctaagtc tcatgatcaa tcctttaaaa ttatttaaga
     3481 catcctattt taagagtatc ttaaaacgac ttgatttaaa ctagctatat tttgattcgg
     3541 attttttgat tcgcctataa atttaagcac caaaaccaaa gcaacaatca ccaatgcaaa
     3601 aattttagca ttaggtttat ttttatctaa aacataggct ataaacattg caaaaagcac
     3661 gacaaaacaa cataaaaatg ctataagaca gcaaattgcc atattcataa actttaaact
     3721 aggaatcaaa taccaaccat tactataaag cccattttca aaatcaggtg gagttcctat
     3781 aaaaaatttt tgaaaagcat tgagatgatt ataagcattt tctggaacta caggggtatc
     3841 catcccgcat tctcctgttg gcaaaaacca actagaagcc catttataca aaggtaaatt
     3901 aaatggataa ataggaattt cacgacatcc atctacgcct gcaaaaggat tttcagaatg
     3961 aaccacttca tggatatgat ttaaagttag acaatgctcc aagccaagcc aaattccata
     4021 aaaagctaag ctataagaaa aaatttttat aatattattt gcagggttga ttaatgcaat
     4081 cataccacct atagccataa caagcatatc aaatcttata tacacacatt gttcacaagg
     4141 tttcataaaa agatattctt gaaataaaaa atgtgctata caagtaagtc ctatagtaac
     4201 tataatcaaa atcaaccaag gtttgcgcgt atcttgccat ttggaaagtg aaaaatttct
     4261 gcatttatct ttcattttta tacaactcat ttttgcttgc taagttcttt agtaatttca
     4321 atcaaagcct ctggagagtt gattgcactt ggaacgattt gatattttcc attaacaaca
     4381 aaagcagggg tgccataatt ttgcgaaata ggattggcaa tttcataact ttttaaaagc
     4441 tctgcagcct ctggagtttt taagaaattt tcaaaatcag ctttacttac attcattgct
     4501 tttaaaccga cactataatt atcagcgtta gcaataggat ttttaagaat tacatattct
     4561 ttaccttcgc ttaatgcgct agcacttata cctgctaaaa aagcacatac aacaatagat
     4621 cttgctaatt ttactggaaa tttcattacc ctctccttga aatttggttt tgataaaact
     4681 ttttattaag tttttatgta ataactatta taaaactatt
//
LOCUS       DAPIWJ010000105         4408 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.107, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000105 DAPIWJ010000000
VERSION     DAPIWJ010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4408
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.107"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            68..763
                     /locus_tag="RJ259_001554"
     CDS             68..763
                     /locus_tag="RJ259_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HDV7367233.1"
                     /translation="MTQEELDALMNGDVDLDSETEAEVKTEESNTEEDALMLEDVKIA
                     DYKPNSSVVWPPPPPNQEHKVVHQLDDVTKDSELKATEMMDKLESINNFFADSESLLK
                     EINKAIEKNIDIFSKLNEKFPNVESFSEALELNNQAKKSSKEIVGNLQSGQDEVMMAM
                     DAMQYQDIHRQKIERVINVMRALSRYMSSLFEGKIDDKKRVSSAVHIEGDSTADVVSN
                     DDIEALIASLGQK"
     gene            760..2013
                     /locus_tag="RJ259_001555"
     CDS             760..2013
                     /locus_tag="RJ259_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HDV7367234.1"
                     /translation="MIIPEIVAPAGNFTKLKIALAYGADAVYAGVNNFSLRSRTAREF
                     NYESFEEAIKYTHERGKKIYVTLNGFHLSSQIEGLKRHILKLREMKPDAFIVASVGAM
                     RLVKELAPEISLHVSTQANILNYLDAQVYKDMGAKRVVIARELGLKDAKALKENCDIE
                     LEAFVHGSMCFAYSGRCLISSVQSGRMSNRGSCANDCRFNYELYAKNPENGTLFRLEE
                     DENGTHIFNSKDLNLCSYIEKIMQENCISAFKIEGRTKSEYYVALTTRTYKMAIQDAL
                     EGKFESSKYEKEIATLKNRGFTDGYLVSRPLEKTDTQNHNTSIEEGSHQVHAISEDGR
                     FFKCKGKIVLNTPYEILTPLGDVIQTCDNELGKIYQKEGKYFIEFKKLIAKNNKEFSE
                     IHSGNEHEIQLPNKISALSFLRKEI"
     gene            2014..2508
                     /gene="purE"
                     /locus_tag="RJ259_001556"
     CDS             2014..2508
                     /gene="purE"
                     /locus_tag="RJ259_001556"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HDV7367235.1"
                     /translation="MNFVSILMGSKSDYETMKEAAKTLESFGVKYELIISSAHRSPKR
                     TKEYIANAEEKGVKVFIAAAGMAAHLAGAVAAYTTKPVLGVPMSGSNLASMDSLFSTV
                     QMPSGIPVGTLAIGKAGAINAAYLAMQILAIYDVDLAQKLKEDRLEKEKKLVSDSKEV
                     EVLL"
     gene            2518..3054
                     /locus_tag="RJ259_001557"
     CDS             2518..3054
                     /locus_tag="RJ259_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3972 domain-containing protein"
                     /protein_id="HDV7367236.1"
                     /translation="MQTYLELEEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAH
                     QGTFSVVPSSAKSQTAMVNSMTLAGESFVEKTIGTILNLHEKVLDAKDETLEALKNEN
                     KFLKDALYSMQELYDEDRKTIETLNNELKHAREEIEFLKRKYKLMWSKTAEIFGAKTE
                     PDLEMNKNLEKPIENMEQ"
     gene            3066..3929
                     /gene="glyQ"
                     /locus_tag="RJ259_001558"
     CDS             3066..3929
                     /gene="glyQ"
                     /locus_tag="RJ259_001558"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HDV7367237.1"
                     /translation="MTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLG
                     KKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFD
                     LKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYG
                     LERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFE
                     NSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCA
                     EIYKKNLNEAE"
     gene            3916..>4408
                     /locus_tag="RJ259_001559"
     CDS             3916..>4408
                     /locus_tag="RJ259_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HDV7367238.1"
                     /translation="MKLSEIYNFLDQLSPFNIQESWDNSGILLGDRDSEISTVYLSLD
                     IDENIIKEASENSLIITHHPLIFKGLKDLYDKTYPRAFIKEMIYKNISLISMHTNYDL
                     SHLNTYFTEEILGFKISFKDKFLIYVENSMSFEALCDWVKKKLNLQILRVSDCGKKDI
                     KRIV"
BASE COUNT         1615 a          518 c          862 g         1413 t
ORIGIN      
        1 gttttagata aaattgatta taattttgag caattattga aaatctagat ttaaaaaagg
       61 gaaaaaaatg actcaagaag agcttgatgc tttgatgaat ggtgatgttg atcttgattc
      121 agagacagaa gcagaggtaa aaaccgaaga atcgaatacc gaagaagatg ctttgatgtt
      181 agaagatgtc aaaatagctg attacaaacc taattctagt gtagtatggc caccaccccc
      241 accaaatcag gagcataaag ttgtacatca gttagatgat gttacaaaag atagcgagct
      301 taaagcaacg gaaatgatgg ataagcttga aagtattaat aatttttttg cggattctga
      361 aagtttactc aaagaaataa ataaagcaat agaaaaaaat attgatattt tttctaaact
      421 taatgaaaaa tttcctaatg tggaaagttt cagtgaagct ttagaattaa acaatcaagc
      481 taaaaaaagt tctaaggaga ttgtcggaaa tcttcaaagc ggacaagatg aagtgatgat
      541 ggcaatggat gcaatgcagt atcaagatat acatcgtcaa aaaatcgaac gtgttattaa
      601 tgtaatgcgt gctttaagcc gttatatgag ttccttattt gaaggtaaaa ttgatgataa
      661 aaaacgtgta agttctgcag tgcatattga aggtgatagt actgctgatg ttgtaagtaa
      721 tgatgatata gaagctttaa ttgcaagttt agggcaaaaa tgatcattcc tgaaatagta
      781 gctcctgcag gaaatttcac aaaattaaaa attgctttag cttatggcgc agatgcggtt
      841 tatgcgggtg tgaataattt ttctttaaga tcacgcactg caagagaatt taattatgaa
      901 agttttgaag aagctatcaa atatactcat gagcgtggta agaaaattta tgttacttta
      961 aatggttttc atttgagttc tcaaattgaa ggtttaaaaa gacatatttt aaaattgcgt
     1021 gagatgaaac ctgatgcttt tattgtagct tctgttggag ctatgcgtct tgttaaagaa
     1081 cttgcacctg aaatttcttt acatgtttct actcaggcaa atattttaaa ttatttagat
     1141 gctcaagttt ataaggatat gggtgctaaa agggttgtaa ttgccagaga attagggctt
     1201 aaagacgcta aagctttaaa ggaaaattgc gatattgaac ttgaagcttt tgtgcatggt
     1261 tctatgtgtt ttgcttattc agggcgttgt ttaataagct ctgtgcaaag tggaagaatg
     1321 agcaatcgtg gatcttgtgc aaatgattgt agatttaatt atgagcttta tgctaaaaat
     1381 ccagaaaatg gcactttatt tcgcttagaa gaagatgaaa atggtactca tatttttaat
     1441 tctaaagatt taaatctttg ttcttatata gaaaaaatca tgcaagaaaa ttgtatcagt
     1501 gcttttaaaa tagaagggcg tactaaaagc gaatattatg ttgcgcttac aacaaggact
     1561 tataaaatgg ccatacaaga tgctttagag ggtaaatttg agtcaagtaa gtatgaaaaa
     1621 gagattgcta cacttaaaaa tcgtggtttt acagatggct atcttgtttc gcgtccttta
     1681 gaaaaaaccg acacacaaaa tcataataca agcatagaag aaggttctca tcaagtgcat
     1741 gctataagcg aagatggaag attttttaaa tgtaaaggga aaatcgtttt aaacacgcct
     1801 tatgaaattt taaccccttt aggcgatgtg attcaaactt gcgataatga actaggtaaa
     1861 atttatcaaa aagagggtaa atattttata gagtttaaaa aacttattgc taaaaacaat
     1921 aaagaattta gcgaaattca tagcggtaat gaacatgaaa tccaattacc aaataaaatc
     1981 agtgcattaa gttttttaag aaaggaaata tagatgaatt ttgtttctat tttaatggga
     2041 agcaagagtg attatgagac tatgaaagag gctgctaaaa ctttagaaag ttttggtgta
     2101 aagtatgaac ttatcatctc atcagctcat cgtagtccaa aaagaacaaa agagtatatt
     2161 gcaaatgctg aagaaaaagg tgtgaaggtt tttatagcag cagctggaat ggcagcgcat
     2221 ttagctggag ctgttgcagc ttatacaaca aaacctgttt taggagtgcc tatgtcagga
     2281 agcaatcttg caagtatgga ttctttgttt tctacggtgc aaatgcctag tggaattcct
     2341 gtaggaactt tagctattgg taaggctgga gcaatcaatg ctgcttattt ggctatgcaa
     2401 attttagcta tttatgatgt tgatttagca caaaagctta aagaagatcg tcttgaaaaa
     2461 gaaaaaaaac ttgtatctga ttcaaaagaa gtagaagttt tattataagg gataaaaatg
     2521 caaacctatc ttgaacttga agaattttgt aaacttgtgc atttaaatga agatgtggtt
     2581 aagggtatga tggccaatgg ggctttaaat tttaaagaag aagagggtaa aatttacatc
     2641 gaagcccatc aaggtacttt tagtgtagtg cctagttctg caaaatctca aactgcaatg
     2701 gtaaattcaa tgactttagc aggagaaagt tttgttgaaa aaacaatagg aactatttta
     2761 aatttacatg aaaaagtttt agatgctaaa gatgaaacac ttgaagcatt aaaaaatgaa
     2821 aataaatttt taaaagatgc cctttattct atgcaagagc tttatgatga agatagaaaa
     2881 actatagaaa ccttaaacaa tgagttaaaa catgcgcgtg aagagataga atttctcaag
     2941 cgtaaatata aattaatgtg gagtaaaact gcagaaattt ttggagctaa gacagagcct
     3001 gatttggaaa tgaataaaaa tttagaaaaa cctattgaaa atatggaaca ataaagagag
     3061 atacaatgac tttttcacaa atgatactta atttacaaaa ttattggcaa gagcaaggtt
     3121 gtgcgattat gcaaccttat gatatgccag caggtgcagg aacctttcat ccagcaactt
     3181 ttttaagaag tttaggaaaa aaaccttggg cagctgctta tgtggctcca agtagaaggc
     3241 ctactgatgg acgttatggt gaaaatccta atcgcttagg tgcttattat caatttcaag
     3301 ttttaattaa acctagtcct gataatattc aagaattata tcttaaaagt cttgaaaatt
     3361 tgggttttga tttaaaaagt catgatattc gttttgttga agataattgg gagagtccaa
     3421 gtttgggtgc ttggggttta ggctgggaag tatggcttga tggtatggaa gttactcaat
     3481 ttacttattt tcagcaagtt ggcggtatag cagtagattt agtaagtgct gaaattacct
     3541 atggtcttga aagaatagcc atgtatcttc aaaatgttga taatgtttat gatatagttt
     3601 ggagtgaatt taatggagaa aaaattaaat acgcagatgt gcataagcaa agtgaatatg
     3661 aatttagtaa atacaatttt gaagtaagtg atgttaaaat cttaaatgag cagtttgaaa
     3721 attcttacaa agaatgtaaa aatattttag aacaaggact agctttacct gcttatgatt
     3781 attgtatgct tgctgcacat acttttaatc ttttagatgc aagaggagca atttctgtag
     3841 cacaaagaca agattatatg ttaaaaattc gtgaactttc aaaaaattgt gctgaaattt
     3901 ataagaaaaa tttaaatgaa gctgagtgaa atttataatt ttttagatca attaagtccc
     3961 tttaatatcc aagaatcatg ggataatagt ggaattttgc ttggagatag ggatagtgaa
     4021 atttcaactg tttatttaag cttagatatt gatgaaaata tcattaaaga agcgagtgaa
     4081 aattctttaa ttatcacaca ccatcctttg atatttaaag gtttaaaaga tttatatgac
     4141 aagacttatc ctagggcttt tatcaaagaa atgatttata aaaatatttc tttaatcagt
     4201 atgcatacaa attacgattt aagtcattta aatacttatt ttacggaaga aattttaggt
     4261 tttaaaattt cttttaaaga taaattttta atttatgtgg aaaattctat gtcttttgaa
     4321 gctttgtgtg actgggtgaa aaaaaagtta aatttgcaaa ttttacgtgt aagtgattgt
     4381 ggcaaaaaag acattaagcg cattgtta
//
LOCUS       DAPIWJ010000106         4398 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.108, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000106 DAPIWJ010000000
VERSION     DAPIWJ010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4398)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4398)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4398
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.108"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            1..387
                     /locus_tag="RJ259_001560"
     CDS             1..387
                     /locus_tag="RJ259_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HDV7367239.1"
                     /translation="MLSLSLNADIIISADNLPNVSKEFLQHNFKAPIGIVQKDKNSYE
                     VYLSDGTELEFDIDGAWKEIENKAFPFDLDFLPQNLANIIKNEFPNTKAREIERKINH
                     YKIKLDNDIKILIDFNGTILYKEFDD"
     gene            complement(396..2012)
                     /locus_tag="RJ259_001561"
     CDS             complement(396..2012)
                     /locus_tag="RJ259_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HDV7367240.1"
                     /translation="MKNKKIILASFMVLCMLLGILYFKNEPKYIDENLYQSLLSQNLI
                     QKAVIDKDEIWLKAEGENYVIIKDGIDIKTLLSKVPVEVKKDNTLWVFFVLLIFIIAL
                     FISLGYFARKKELVKYPISNKNQNHTQAQNSNINLESSHIKPVISNITFNDVAGVDEV
                     KMELSELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG
                     SSFVEIYVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKARGEMSNVERDSTLNQLL
                     TQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKD
                     KNNNINLNKIAKASVGFSGAGLETLVNEAAINALRRNSALVEESDFYAVLNKVLLGKK
                     KILSFNNEEKKIQATYQAAKALSAYYFDIGFEKITLIEDRFKEYEHNIRSKSELINRI
                     KVYLAGSRAMRLIYNESYTNSQDDFLKIKELLDYMLSFDMLKESNLSEQKKEMDEFLN
                     SMKDKILKLSELLLEKEKIEYDDVKDIMQV"
     gene            complement(2016..3266)
                     /gene="mtaB"
                     /locus_tag="RJ259_001562"
     CDS             complement(2016..3266)
                     /gene="mtaB"
                     /locus_tag="RJ259_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HDV7367241.1"
                     /translation="MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVN
                     SCTVTNGADSGIKSYVNTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI
                     NEFLGAKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSR
                     SVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLKNGTTLGKLLQKMGQILGIKRIRL
                     GSLEPAQLDESFLEILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS
                     KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVING
                     TLAKERLNTLKSIVEKNNYEFRKKNQVSLEVLVENQKDGFFEGYDQFFNKIKIKSDKD
                     IAKEWIVISEYEVQEKSNFTNLKG"
     gene            complement(3263..>4398)
                     /locus_tag="RJ259_001563"
     CDS             complement(3263..>4398)
                     /locus_tag="RJ259_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HDV7367242.1"
                     /translation="KNLVDKIREKNSELKELVELKPSVENIEALKASDKKLEEFEQAL
                     NFASVSYSVYEKKIDEELSRVSAEIKVQSLRAVNILVAIVIVIAIAFMLKFIAKKYIK
                     DSERYYTATKIINFININIIFLILLFAYIENITYLVTILGFASAGLAIAMKDMFMSML
                     GWCVIIFGGSFRVGDRVKVFQNDTTYIGDIIDISFLRITLYEELTLETYNKNRRSGRI
                     IFIPNNYVFTNLLANYTHHGMKTVLDGIDISVTFDSNLDKAQEIVENIVTRHAKGYTE
                     LARKNIARLQHEYSIKNPKVEPRFFMFFEHWGMRISAWYMTNAYAALVLRSTISKEII
                     KEFNKHKDIKIAYPSQNLYLGNLNQNHFEQHHENMYFHARNKD"
BASE COUNT         1488 a          813 c          485 g         1612 t
ORIGIN      
        1 attttaagct tatctttaaa tgctgatata ataatttctg ctgataattt accgaatgtt
       61 tctaaagaat ttttacaaca taatttcaaa gcgcctatag ggatcgtgca aaaagacaaa
      121 aattcctatg aagtctatct tagcgatgga acagagcttg aatttgatat agatggagct
      181 tggaaggaaa ttgaaaataa agcctttcct tttgatctag attttttacc tcaaaattta
      241 gccaatatca tcaaaaacga atttccaaat acaaaagcta gagaaattga aagaaaaatc
      301 aaccattata agattaaact tgataacgat ataaaaattc ttatagattt taatggaact
      361 atcttatata aagaatttga tgattaaaca tatcatcaaa cctgcattat atctttaaca
      421 tcgtcatatt ctatcttttc tttttcaagc aaaagctctg ataattttaa aattttatcc
      481 ttcatagaat ttaaaaattc atccatttct tttttttgtt cacttaaatt tgactctttc
      541 aacatatcaa aactcaacat ataatcaagc aattctttaa tctttaaaaa atcatcttgc
      601 gagttagtat aactttcatt gtaaatcaat ctcatggctc tagaaccagc caaataaact
      661 tttatacgat tgataagctc tgattttgat cttatattat gctcatattc tttaaaacga
      721 tcttcaatga gagtgatttt ttcaaatcct atgtcaaaat aatacgcact caaagctttt
      781 gcagcttgat aagtggcttg aattttcttc tcttcattat taaaacttaa aatctttttc
      841 ttacctaaaa gaactttatt taatacagca taaaaatcgc tttcctcaac taaagcacta
      901 tttcttctta aagcattaat tgctgcttca ttgaccaaag tttcaagccc tgctccacta
      961 aaacctacgc ttgctttagc gattttattt aaattgatat tattgttttt atctttcata
     1021 taaatttcta aaattttaag tctatcctta aaatcaggca aagataaaaa aattctccta
     1081 tcaaaacgcc ccgaacgcaa taaagcagga tccataagtt cgattttatt tgtcgcagct
     1141 ataactataa ccccgctatt gtcctcaaaa ccatccattt gagttaaaag ttgatttaaa
     1201 gtgctatctc tttcaacatt tgacatttct cctcttgcct tacctacggc atctatttca
     1261 tcaataaaaa ctatgctagg cgccatcatt ttagcttttg aaaaaagctc tctaactctt
     1321 tttgcaccca tacctacata aatttcaaca aaacttgaac cactttgata aaaaaatggc
     1381 acccctgctt ctcctgcaac tgcttttgct atcaatgttt ttcctacacc aggtgggcct
     1441 accattaaaa caccttttgg catttttaca ccaaattctt tatatttttt aggattttgt
     1501 aaaaaatcca caagttcgct tagctccatt ttaacttcat caacacctgc tacatcatta
     1561 aaagtaatat ttgaaatcac aggttttata tgggaacttt ctaaatttat atttgaattt
     1621 tgagcttgag tgtgattttg attcttattt gatattggat atttaaccaa ctctttttta
     1681 cgagcaaaat aaccaagact tataaaaagt gcgataataa aaataagtaa aacaaaaaac
     1741 acccaaagcg tattatcttt tttaacctct acgggaactt ttgataaaag tgtttttata
     1801 tctatgccat cttttataat tacgtaattt tcaccttctg ccttaagcca aatttcgtct
     1861 ttatcaatca cagctttttg gattaaattt tggcttaata gactttgata aagattttca
     1921 tctatatatt taggttcatt tttaaaatat aaaattccca aaagcataca taaaaccata
     1981 aaagatgcta aaattatctt tttatttttc attatctagc cttttaaatt tgtaaagtta
     2041 gacttttctt gtacttcata ttcagatata acgatccatt ctttagctat atctttatca
     2101 cttttaattt tgatcttatt aaaaaactga tcataaccct caaaaaaacc atctttttga
     2161 ttttctacca aaacttcaag tgaaacttga ttttttttcc taaattcata attatttttt
     2221 tctactatgg attttaaagt gtttagcctt tctttagcta aagttccatt tatcacatct
     2281 ttcatggtag cagaatgcgt gttgtttcta gggctaaaaa taaaagcatg gatatgagtg
     2341 agtggaaatt ctttaaaatt tcttaaagct tcttgccata gctcttcact ctcgcctgga
     2401 tgagctacta taaaatccgt ccctaaagca tatcctttgc ttgctatagt attaaaaagc
     2461 tttaaatcat tatccgtatg tgatcttctt ctcattatac gaagcatttt ttcacttgta
     2521 tgttgcaatg caatatgcaa atgcctttca agccaagctt catctaagat ttctaaaaaa
     2581 ctttcatcaa gctgtgcagg ttctaaacta cctagcctta tgcgttttat acctaaaatt
     2641 tgtcccattt tttgcaaaag cttgcctagg gttgtgccat ttttaagccc atatgaacct
     2701 atattagtcc ctgttaaaac aatttcacta taaccattag ctcccaaaat ttcaacctgt
     2761 tttaaaagag ctttttcatc cacacttctt gattttcccc tcacgctagg aataatacaa
     2821 taagaacaag caaaatcaca accttcttga attttcacaa aagctttggt atgattttca
     2881 tactcacaaa ctatatcttt atcaataaaa tttaaatttc caagttcata aaaacttgtc
     2941 tttgctccta aaaattcatt gattttatct ttatttgacg ctccaagcac tccaaaaact
     3001 tgctttttat ctaaaagctc cttacctttg cttacagcac cacaacctgt aagtataact
     3061 ttaatgcctt ttttttgcat ggtatttaca taagacttta tcccgctatc agctccattt
     3121 gtaaccgtgc aagaatttac aacgataatt tgtgctttat tctcatcatt tataatctca
     3181 taatctttta cataactttt taaaagctct gtatcataaa tatttgtgcg acacccaaag
     3241 gttttaaaaa aaactttttc tttcaatcct tattccttgc atgaaaatac atattttcat
     3301 gatgttgttc aaaatgattt tgatttaaat ttcctaaata taaattttgc gatggataag
     3361 caatttttat atctttatgc ttattaaatt cttttataat ctctttgcta atcgtacttc
     3421 ttaataccaa agccgcataa gcattagtca tataccatgc agaaattctc attccccaat
     3481 gttcaaaaaa cataaaaaac cttggctcca ctttaggatt tttaatacta tattcatgtt
     3541 gtaaacgagc tatatttttt ctagcaagct cagtataacc tttggcatgg cgtgtaacaa
     3601 tattttccac aatttcttga gctttgtcaa gattgctatc aaaagtaaca cttatatcaa
     3661 tgccatcaag cacggttttc ataccatgat gggtataatt agcaagcaaa tttgtaaaaa
     3721 catagttatt aggaataaat ataatacgcc cactacgacg atttttatta taagtttcaa
     3781 gcgtaagctc ttcataaaga gtaatgcgta aaaaagaaat gtctataata tctcctatat
     3841 aggtagtatc attttgaaaa acttttacac gatcccctac tctaaaactt ccgccaaaaa
     3901 taatcacaca ccatccaagc atagacataa acatatcttt catagcaata gctaagcccg
     3961 cagaggcaaa accaagtata gttacaagat aagtaatatt ttctatataa gcaaagagca
     4021 aaataagaaa aataatattt atattaataa aattaataat cttcgtagca gtataatatc
     4081 tttcactatc cttaatgtat tttttagcaa taaatttcaa cataaaagct atagctataa
     4141 caataacaat agcaacaagt atatttacag cccttaagct ttgaacttta atctcagcac
     4201 ttactcgaga aagctcttca tcaatttttt tctcataaac agaataagaa acactagcaa
     4261 aatttaaagc ttgctcaaat tcttccagct ttttatccga agcttttaaa gcttctatat
     4321 tctcaacact tggtttaagc tcaactaatt ccttaagttc tgagtttttt tccctgattt
     4381 tatctactaa atttttaa
//
LOCUS       DAPIWJ010000107         4150 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.109, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000107 DAPIWJ010000000
VERSION     DAPIWJ010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4150
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.109"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            134..709
                     /locus_tag="RJ259_001564"
     CDS             134..709
                     /locus_tag="RJ259_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HDV7367243.1"
                     /translation="MKKIFISFVVLATCLWAKNIAYTDEVVSLYLNKDDTKVIGRLLP
                     TNPFEVLKSENNKVLLKIDGYVNPKAPSVIYFNDSQRIIVAAFSKNTKLNFSQRVAGK
                     DGKWDKVSLEIWADKKEFAKDNKEMLNRAKELFVNNCGICHAIHKEKEFTANAWPAIF
                     RSMADRTGIDKKDRWLVIEYLQKNAKDFKTK"
     gene            720..3236
                     /locus_tag="RJ259_001565"
     CDS             720..3236
                     /locus_tag="RJ259_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
                     /protein_id="HDV7367244.1"
                     /translation="MLDRRKFLKIGASLSALHLIPSLSAGKTVEASKVSLGLVKNGEV
                     ITAAHWGILKLTIKDGKIVKSEPWEKVTKMDNPLQHYTADMVYKSRVKYPYVRKSYLE
                     NPDNPKPELRGKDEFVRVSYDEAIKLIAKELKKTRDSKGASAIFGGSYGWKSSGNMQN
                     SRILLHRFLNVTGGFVGATGDYSTGASQVIMPYVVGSIEVYEQQTSWENILSDSKYVV
                     IWGADPLSTLRIAWTSNEQRGLAYFEKLKNSKIKVICIDPVKTTTAKFLNAKWIAPRP
                     NTDVALMMGMASHLIAKKKVNYEFLDTYTTGFDKFKDYLEGKEDGVKKDTKWASKICG
                     IDEKTIKNLAETFYDNPTMIMSGWGMQRAHHGEQPHWMLVTLCAMLGQIGTKGGGFGL
                     SYHYSNGGVPTCKGGVIGGMTAGSLGIWKNGKFKGLSKAEASSEGAEWLQNAASYSFP
                     VARIADALLHPGKTIDHNGAKITYPDIDFIYWVGGNPLVHHQDTNTNVKAWRKPRTVV
                     VNEIYWTPTAKMADIIMPVTSSYERDDITMTGDYSNMHIAPMKQAVEPVGESKDDYVI
                     FSDICKIYGKDVFNAYTENGKKAKDFIKEYYNSALKQTQSFGEAFATPMPSFEEFWAK
                     NKPITFEPTAESLEWTRFSEFIEDPILNALGTDSGLIEIYSETIKNYNYDDCKAHPTW
                     FEPIEWLGNASKEAPFHLLTNHPRDRLHSQLCHTSLRDTYAIKDREPILINSKDAKKL
                     GIKNGDVVRVFNKRGEVLAGAVVNDEIMQGVVRLCEGAWYDPNENGLCKCGNANVLTM
                     DIPTSKLANGNISHTGLVNIEKFKGELPKLTAFSVPKGAN"
     gene            complement(3260..4135)
                     /gene="zupT"
                     /locus_tag="RJ259_001566"
     CDS             complement(3260..4135)
                     /gene="zupT"
                     /locus_tag="RJ259_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HDV7367245.1"
                     /translation="MQFTFEQIFIAILLTLFAGFSTAIGSTIAFFSRKDDLRVLSLGL
                     GFSAGVMIYISFMEILPTALKDFKNHYDSHWAELLGLACFFGGILISLLIDKLIPEDV
                     NPHEPKEDLSELKICPLPQKGQNPPKFHPGEKLHQINTKALKRTGIFTALAIAIHNFP
                     EGFATFISSLDNLTLGIAIAIAVAIHNIPEGLAVSLPIYHATGDKKKAFIYSALSGLA
                     EPLGAFVGALILLPFIGDLTLAISFAVIAGIMVFISLDELLPAAKTYDKAHDSLYGLI
                     AGMAIMALSLNLLGQ"
BASE COUNT         1523 a          680 c          771 g         1176 t
ORIGIN      
        1 tttattatat caataaagaa taatattaaa gcactaaaaa taagtaatct tagtaaaaat
       61 tatacaatta agtaataatt aaattgcata gtattaaaat acatttacat caaatttata
      121 ttaaggaata gtaatgaaaa agattttcat ttcttttgtt gtcctagcga catgtttatg
      181 ggcaaaaaat attgcctata ctgatgaagt tgtatcgctt tatcttaaca aagatgatac
      241 taaagttata ggaagacttt tacctacaaa tccttttgaa gtcttaaagt ctgagaacaa
      301 taaggtttta ctaaaaatcg atggttatgt aaatcctaaa gcaccttctg tgatttattt
      361 caatgactct caaagaatta ttgttgcagc tttttccaaa aacacaaaat taaatttctc
      421 tcaaagagta gctggaaaag atggaaaatg ggataaagta agccttgaaa tttgggcaga
      481 taaaaaagaa tttgccaaag acaataaaga aatgctaaat cgtgccaaag agctttttgt
      541 aaataactgc ggaatttgcc acgctatcca caaagaaaaa gaatttacag ctaacgcttg
      601 gcctgcaatt ttccgttcta tggctgatag aacaggtatt gataaaaaag acagatggct
      661 agttatagaa tacttacaaa aaaacgcaaa agattttaaa acaaaataag gagaaaagca
      721 tgctagatag aagaaaattt ttaaaaattg gagcaagctt aagtgcttta catctcattc
      781 caagcttaag tgcaggaaaa accgtagaag cttcaaaagt tagcctcgga cttgtaaaaa
      841 atggagaagt gatcaccgca gcacactggg ggattttaaa actcactata aaagatggca
      901 aaatagtaaa aagcgaacct tgggaaaaag ttacaaaaat ggataatcct ttacagcact
      961 acactgctga tatggtttat aaatctcgtg tgaaataccc ttatgtgcgt aaatcctacc
     1021 ttgaaaatcc tgacaatcct aaacctgaac ttcgtggtaa agatgagttt gttcgcgtaa
     1081 gttatgatga agcgatcaaa cttatcgcca aagaacttaa aaaaacaaga gatagcaaag
     1141 gtgcaagtgc aatttttggt ggaagttatg gctggaaatc aagtggaaat atgcaaaact
     1201 cacgcatctt gcttcataga tttttaaatg taacaggtgg atttgtagga gctacagggg
     1261 actattctac aggagcttct caagtgatta tgccttatgt tgtaggatcg attgaagttt
     1321 atgagcaaca aacctcatgg gaaaatatct taagcgattc taaatatgtt gtgatttggg
     1381 gtgctgatcc gctttctact ttacgcatag cttggacttc aaacgaacaa agagggttgg
     1441 cgtattttga aaaacttaaa aacagtaaaa tcaaagtgat ttgtatagat cctgtaaaaa
     1501 ccactacagc gaaattttta aatgccaaat ggatagctcc acgcccaaat accgatgtgg
     1561 ctttaatgat gggtatggca agccatttaa tcgctaagaa aaaagtcaat tacgagtttt
     1621 tagacactta caccactggc tttgataaat ttaaagacta tttagaaggc aaagaagatg
     1681 gagttaaaaa agataccaaa tgggcaagta aaatttgtgg tatcgatgaa aaaactatca
     1741 aaaatttagc tgaaactttt tatgataatc ctactatgat tatgagtggt tggggtatgc
     1801 aaagagcaca tcatggagaa cagcctcact ggatgctagt tactctttgt gcgatgttag
     1861 gacaaatcgg cacaaaagga ggtggttttg gactaagcta ccattatagc aatggcggtg
     1921 ttccaacttg caaaggcgga gtgatcggtg gtatgacagc aggtagctta ggaatttgga
     1981 aaaatggtaa atttaaaggc ttaagcaaag cagaagcttc aagcgaaggt gcagaatggc
     2041 ttcaaaatgc agcgagttat tctttccctg tagcaagaat cgctgatgct ttacttcatc
     2101 ctggaaaaac catagatcat aatggtgcta aaatcactta tcctgatatt gattttatct
     2161 actgggtagg tggaaatcct ttagtgcatc atcaagatac caacactaat gtaaaagcat
     2221 ggagaaaacc acgcaccgtt gtggtaaatg aaatttactg gactccaaca gctaaaatgg
     2281 cagatattat catgcctgta acttcatctt acgaaagaga tgatattacc atgacaggag
     2341 attattcaaa tatgcatata gctcctatga aacaagccgt tgagcctgtg ggtgagagca
     2401 aagatgatta tgtaattttc tctgatattt gcaaaattta tggaaaagat gtctttaatg
     2461 cctacacaga aaatggcaaa aaagctaaag atttcatcaa agaatactac aacagtgccc
     2521 taaaacaaac tcaaagtttt ggcgaagctt ttgccactcc tatgccaagt tttgaagaat
     2581 tttgggctaa aaataaacca atcacttttg aaccaacagc tgaaagttta gaatggactc
     2641 gtttttcaga atttatagaa gatcctatct taaatgctct gggtacagat tcaggactca
     2701 ttgaaattta ctcagaaacg attaaaaatt ataattatga tgattgtaag gcacatccta
     2761 cttggtttga gcctattgaa tggcttggaa atgcaagcaa agaagcacct ttccacttac
     2821 ttacaaatca cccaagagat cgcttgcact ctcaactttg ccacacaagc ttaagagata
     2881 cttatgcaat aaaagataga gagccgattt taatcaattc caaagatgca aaaaaacttg
     2941 gtataaaaaa tggcgatgta gtgcgtgtgt ttaacaaacg cggtgaagtt ttagcagggg
     3001 cggttgtaaa tgatgaaatc atgcaagggg ttgtaagact ttgcgaaggt gcttggtatg
     3061 atcctaatga aaacggactt tgcaaatgtg gaaatgcaaa tgttttaacc atggatatac
     3121 caacttcaaa acttgccaat ggcaatatct ctcacacagg gctcgtaaac atagaaaaat
     3181 ttaaaggtga actaccaaaa cttactgcct tcagcgtgcc aaaaggtgcg aattaaattt
     3241 aagaaagccg caaggctttc tattgtccaa gcaaatttaa acttaaagcc attattgcca
     3301 ttcctgcgat aagtccatat aaactatcat gagccttatc ataagttttt gcagcgggca
     3361 aaagctcatc aagggatata aaaaccataa ttcctgcaat cacagcaaaa cttatagcta
     3421 aagtaagatc gcctataaaa ggcaataaaa tcaaagctcc aacaaaagca cccaaaggct
     3481 ctgctaaacc cgaaagagct gaataaataa aagctttttt cttatctcct gtagcatggt
     3541 aaattggcaa actcacagcc aaaccttcag ggatattgtg tatagccaca gctatagcta
     3601 tagcaattcc taaagtaaga ttatcaagac ttgaaataaa agtagcaaaa ccttctggga
     3661 aattatgtat agcaatagct aaagctgtaa aaatccctgt gcgttttaaa gctttagtat
     3721 tgatctgatg caacttttct ccaggatgaa atttcggagg attttgtcct ttttgaggta
     3781 aaggacaaat ttttaactcg cttaaatctt ctttaggttc atgaggatta acatcttcgg
     3841 ggattaattt atcaatcaat aaagatatta aaattccacc aaaaaaacaa gctagtccca
     3901 agagctcagc ccaatgtgaa tcatagtgat ttttaaaatc tttaagtgca gtaggtaaaa
     3961 tttccatgaa agaaatatat atcattactc cagctgaaaa accaagtcct aaagaaagca
     4021 ctcttaaatc atcttttctg gaaaaaaagg ctattgtaga acctatagct gtagaaaaac
     4081 ctgcaaaaag agtcagtagt attgctataa aaatttgttc aaatgtaaat tgcattaata
     4141 attcttactt
//
LOCUS       DAPIWJ010000108         4105 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.110, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000108 DAPIWJ010000000
VERSION     DAPIWJ010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4105)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4105)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4105
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.110"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1195)
                     /locus_tag="RJ259_001567"
     CDS             complement(<1..1195)
                     /locus_tag="RJ259_001567"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HDV7367246.1"
                     /translation="MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNL
                     IDESLQFIQDKEYVKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFN
                     KTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLH
                     QEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKK
                     DEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIA
                     LIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELL
                     NAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPG
                     VEVGKL"
     gene            complement(1189..2013)
                     /gene="galU"
                     /locus_tag="RJ259_001568"
     CDS             complement(1189..2013)
                     /gene="galU"
                     /locus_tag="RJ259_001568"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HDV7367247.1"
                     /translation="MLQTCIFPAAGYGTRFLPATKTLPKEMLPILTKPLIHYGVDEAL
                     EAGMENMGFVTGRGKRALEDYFDISYELEHQISGTKKEYLLDEIRSLINRCTFTFTRQ
                     NQMKGLGDAVLKGRPLVGDEAFGVILADDLCVNEEGLNVMAQMVKIYEKYRCTIIAVM
                     EVPKEQVSNYGVISGNFVEENLIMVNSMIEKPSPDEAPSNLAIIGRYILTPDIFGILE
                     NTKAGKNGEIQLTDALLTQATNGMVLAYKFQGKRFDCGSVEGFVEATNYFYEKSKC"
     gene            complement(2095..4068)
                     /gene="acs"
                     /locus_tag="RJ259_001569"
     CDS             complement(2095..4068)
                     /gene="acs"
                     /locus_tag="RJ259_001569"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HDV7367248.1"
                     /translation="MLNQNNQELFKPSKEFSRNARIKNLCEYYDLCDEAKEDFEGFWK
                     RQAFEKIEWFSPFSRVLNEDKAPFYKWFEGGTLNVSYQCLDRHMKTRRNKAALIFEGE
                     MGDYEVYTYRRLLHETCKAANLLKKFGVKKGDRVVIYMPMIPETAIVMLACARIGAIH
                     SVVFGGFSPEALRDRIIDAGAKLVVTADGAFRRGKPYMLKPAVDKALSEGCESVEKVL
                     IVIRNNEPIEYIKGRDYVYNELVKNESYKCEPEIMDSEDLLFLLYTSGSTGKPKGVMH
                     ASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLACGATTIMHEGTP
                     TYPNSGRWWRMIEEYQISKFYTSPTAIRMLHADAPNEPRKYDLSTLEVLGTVGEPINP
                     SAWKWFYDEIGGTKSPIVDTWWQTETGGHMITPLPGATPLKPGCATLPLPGIFAEVID
                     EEGNKKDEGEDGLLCITKPWPSMIRGIWGNDERYIESYFSQAKKDGKAVYFSGDGAFY
                     DKNGYITITGRTDDVVNVAGHRIGTAEIESAIAKHPSVAESAVVSILDTIKGESLFAF
                     VVLSPASSCDLGGAIETLKELNDILRVEIGPIAKIEKILYTPGLPKTRSGKIMRRILR
                     TIARGEEIKQDISTLEDSKVVETIVKLAKAEFE"
BASE COUNT         1298 a          856 c          547 g         1404 t
ORIGIN      
        1 tcaactttcc aacttccaca ccaggttgat cataagtgtt aatccctagc ataacaccgc
       61 aagttgaagt aaaaagttca taataataca tcaaatatcc cgcatgccaa gcgtcaagtt
      121 tttcaagttc tatcacatca acactcaaat tttcagcgat taaagcgtgc atagttgcat
      181 cacattgagc gtttaaaagt tcgtgaagat tgactttatt acttaaagaa tctaaaaatt
      241 taaaatgaat atcagggata ataggtgctt tttgagcgtc tttgattttt aaaaaagtta
      301 cagttttatt tttaggtcca tccatgatga gttgtaaaaa actatgttga tctcttgcgc
      361 caatgagtgc aataggagtt aaacctatgc gtttatagcc ttgcttttta cctaaacttt
      421 cagcaataag ctggatatac cattcattaa agcctttaaa agcatcgcta tatgaaaaaa
      481 gtacattgat attggcattt ttgtgtgtac aataatgata ggctttttgt aaaatttcat
      541 cttttttgtg agtaaaaaaa tcttcaaaac aagctttagc tccttctaaa agagctttgg
      601 cattatagcc acaaaaacaa agtggaacta tacctacggc tgaaagtatg ctaaaacgac
      661 ctcctacatt tgcagggata aaaaagcatt taatacctaa attttcacct tcttgatgaa
      721 gttttgaatc cttatcggta ataaaaacaa agtatttttt taattcttgc atatcaagtt
      781 taaaatgttc aataagaagt ttaaaaagcg atacaacttc tatagtacta cctgttttgc
      841 tgatgattaa aaacaaactt tcttcaagct tgattttttc taaagtctta ttaaaagaat
      901 gcgagcttgt gttatcgagt ataaaaagct ctctttggtt gcttttttca ttaaaaagca
      961 tatcacgcaa ggcttttaca ccacaacttg aacctcccat tcccactaaa acgatatttt
     1021 ttacatactc tttatcttga ataaattgca agctctcatc gattaaattc aaacttgtgt
     1081 caataagatg ataataccct atatctccac tttttacctc atcattaata cgatttgcat
     1141 aagaacttat agtgtgaatt tcactttgtt taaaaaaaag cgtattgttt aacatttact
     1201 tttctcgtaa aaataatttg tcgcctctac aaagccttct acacttccac aatcaaagcg
     1261 tttcccttga aatttataag ctaaaaccat accattggtt gcttgagtta aaagcgcgtc
     1321 ggtaagttga atttcaccat tttttcctgc tttagtattt tctaaaattc caaaaatatc
     1381 aggagttaaa atatatcttc ctatgatagc aagattactt ggagcttcat caggacttgg
     1441 tttttctatc atagaattaa ccatgataag attttcttct acaaaatttc cagaaattac
     1501 tccatagttt gaaacttgct cttttggtac ttccatcaca gctatgatgg tgcagcgata
     1561 tttttcataa atttttacca tttgagccat aacatttaag ccttcttcat taacacacaa
     1621 atcatcagcc aaaattacgc caaaagcttc atcgccaacc aaaggtctac cttttaaaac
     1681 cgcatcacct aagcctttca tttgattttg tcttgtaaaa gtaaaggtac aacgattgat
     1741 caaagagcga atttcatcaa gtaagtattc tttttttgta cctgaaattt gatgttcaag
     1801 ttcataagaa atatcaaaat aatcctccaa agctcttttt ccacgccctg tgacaaatcc
     1861 catattttcc attcctgctt ctaaagcttc atcaactcca taatggatca aaggcttggt
     1921 taagataggt aacatctctt taggtaaagt ttttgttgca ggtaaaaatc tcgtcccata
     1981 acctgccgca gggaaaatac aagtttgaag cataaaaatt tccttttatt tttttatcat
     2041 tatagcttat ttttatgaat tttcatgcaa caaggcaaag ttctttttgc cttgttattc
     2101 aaactctgcc ttagctaatt taacaatggt ttctactact ttagaatctt caagtgttga
     2161 aatatcctgt ttgatttctt cgcctcttgc tatagttctt aaaattcttc tcattatttt
     2221 accacttcta gtttttggca aacctggagt ataaagaatt ttttctattt tagctatagg
     2281 tcctatttct actcttaaaa tgtcattaag ttcttttaaa gtttctatag ctccgccaag
     2341 atcacaactg gatgcaggac ttaaaaccac aaaagcaaac aatgactcgc ccttaatcgt
     2401 atccaaaata ctcactacag ctgattctgc tacacttgga tgtttagcaa tagcgctttc
     2461 aatttcagcc gttcctatac gatgtcctgc aacattaacc acatcatctg ttcttcctgt
     2521 gatggtaata taaccatttt tatcataaaa agcaccatcg ccactaaaat atacagcttt
     2581 tccatctttt ttagcttgag aaaaataact ttctatatag cgttcatcat tgccccaaat
     2641 tccacgaatc atcgaaggcc aaggtttagt tatacaaagc aacccatctt caccttcatc
     2701 ttttttattg ccttcttcat caataacttc cgcaaaaatc cctggcaaag gcaaggtggc
     2761 acaacctggt tttaaaggag tggcgcctgg taaaggcgtg atcatatgcc cacctgtttc
     2821 tgtttgccac caagtatcga ctataggact tttagttccc cctatttcat cataaaacca
     2881 cttccaagca ctaggattga taggctctcc aaccgttcca agcacttcaa gcgtacttaa
     2941 atcatatttt cttggctcat taggtgcatc agcatgaagc attcttatgg cagttggcga
     3001 agtgtagaat ttgcttattt gatactcttc tatcattctc caccaacgcc cagaatttgg
     3061 ataagtagga gttccttcat gcattatagt cgttgcccca catgctaaag gcccataaac
     3121 tacataagta tgtcctgtaa tccaacccac atcagcacta caccaataat tatcataatc
     3181 tttaatatca aaaacccatt ccatagtcat ttgtgcccaa agtatatatc ctgcacttgc
     3241 atgcataact ccttttggct tgcccgttga tcctgaagtg taaagcaaaa acaacaaatc
     3301 ctcactatcc ataatttcgg gttcacactt ataagactca tttttcacaa gttcgttata
     3361 aacatagtcc cttcctttaa tatattctat aggctcatta ttgcgtataa ctataagtac
     3421 tttttctaca ctttcacacc cttcacttaa agccttatct actgcaggtt ttaacatata
     3481 aggtttgcca cgacgaaaag caccatcagc cgttactaca agtttagctc ctgcatctat
     3541 aattctatct cttaaggctt caggagaaaa ccctccaaat actacactat gaatagcccc
     3601 aatccttgca caagctaaca ttactatagc tgtttctgga atcataggca tataaattac
     3661 aaccctatcg ccttttttta ctccgaattt tttaagcaaa ttggccgcct tgcaagtttc
     3721 atgcaataat cttctataag tataaacttc ataatccccc atttcacctt caaaaatcaa
     3781 agcagcttta ttgcgtcttg ttttcatatg acgatcaaga cattgataac ttacatttaa
     3841 agttccacct tcaaaccatt tataaaatgg agctttatcc tcatttagca ctcttgaaaa
     3901 aggcgaaaac cactcaatct tctcaaatgc ttgtcttttc caaaaacctt caaaatcttc
     3961 cttggcttca tcgcataaat catagtattc acataaattt tttatacgag cattacgaga
     4021 aaattcttta cttggcttaa aaagctcttg attattttga ttaagcataa aaactccttt
     4081 atggttgttt ttaaacatta tataa
//
LOCUS       DAPIWJ010000109         4099 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.111, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000109 DAPIWJ010000000
VERSION     DAPIWJ010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4099)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4099)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4099
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.111"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(39..608)
                     /gene="efp"
                     /locus_tag="RJ259_001570"
     CDS             complement(39..608)
                     /gene="efp"
                     /locus_tag="RJ259_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HDV7367249.1"
                     /translation="MASYSMGDLKKGLKIEIDGIPFKIVEYQHVKPGKGPAFVRIKIK
                     SFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDDGENCQFMDTQTYEQVAISDDDVGE
                     AKKWMLDGMMVDVLFHNGKAIGVEVPQVVELKIIETAPNFKGDTQGSNKKPATLETGA
                     VVQIPFHVLEGEVIRVDTVRGEYIERANK"
     gene            722..1042
                     /gene="rnpB"
                     /locus_tag="RJ259_001571"
     ncRNA           722..1042
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="RJ259_001571"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(1040..1315)
                     /locus_tag="RJ259_001572"
     CDS             complement(1040..1315)
                     /locus_tag="RJ259_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367250.1"
                     /translation="MKQWLSDFKLALIQEDVNKLENLLDELDMKAFIKNLAKESPSED
                     FLKENANDVFYQVQALLQEAVILIEQKKKTKAVEIQKFQKALTYFKS"
     gene            complement(1296..1682)
                     /gene="fliS"
                     /locus_tag="RJ259_001573"
     CDS             complement(1296..1682)
                     /gene="fliS"
                     /locus_tag="RJ259_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HDV7367251.1"
                     /translation="MQNNLAYNAYSQNQVGIESPQKLIEMLYEGILRFCARAKVAIRN
                     EDIEQRVYFVKRTTAIFIELINTLNYEKGGEVAHYLSGLYTREIQLLSLANLENNEDR
                     INEVINVTKGLLEAWREVHNNETVAQ"
     gene            complement(1694..3622)
                     /gene="fliD"
                     /locus_tag="RJ259_001574"
     CDS             complement(1694..3622)
                     /gene="fliD"
                     /locus_tag="RJ259_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HDV7367252.1"
                     /translation="MAFGSLSSLGFGSGVLTQDTIDKLKEAEQKARIDPYTKKIEENT
                     TKQKDLTEIKTKLLSFQTAVSSLADATVFAKRKVVGSISDNPPASLTVNSGVALQSMN
                     INVTQLAQKDVYQSKGLANDGGFVNAQLNGTADLTFFSNGKEYTVTVDKNTTYRDLAD
                     KINEASGGEIVAKIVNTGEKGTPYRLTLTSKETGEDSAISFYAGKKDSNGKYQKDINA
                     EKIFDDLGWGLDVSASIDPDKDKKGYGIKDASLHIQTAQNAEFTLDGIKMFRSSNTVT
                     DLGVGMTLTLNKTGEINFDVQQDFEGVTKAMQDLVDAYNDLVTNLNAATDYNSETGTK
                     GTLQGISEVNSIRSSILADLFDSQVVDGTTEDANGNKVNTKVMLSMQDFGLSLNDAGT
                     LSFDSSKFEQKVKEDPDSTESFFSNITKYEDINHTGEVIKTGSLSKYLNSNGGNTNGL
                     EFKPGDFTIVFNNQTYDLSKNSDGTNFKLTGKTEEELLQNLANHINSKGIEGLKVKVE
                     SYNQNNVTGFRLNFSGDGSSDFSIKGDANILKELGLSDVNITSKPIEGKGIFSKLKAT
                     LQEMTGKDGSITKYDESLTNDIKSLNTSKDSTQAMIDTRYDTMANQWLQYESILNKLN
                     QQLNTVTNMINAANNSNN"
     gene            complement(3625..3990)
                     /gene="flaG"
                     /locus_tag="RJ259_001575"
     CDS             complement(3625..3990)
                     /gene="flaG"
                     /locus_tag="RJ259_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella length regulator FlaG"
                     /protein_id="HDV7367253.1"
                     /translation="MEISKANGQMDTALANISQRTSETQASLNIQTDRSQGQEGDDGQ
                     QRGVSEKLADITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSEEA
                     MRLAEYFRDVIGMIFDKES"
BASE COUNT         1253 a          791 c          542 g         1513 t
ORIGIN      
        1 taaaaaagcc ttggaatagt ccaaaagctt tttttgtatt atttgttcgc tctttctata
       61 tactcaccac gcacagtatc aacgcgtata acttcacctt ctaacacatg aaaaggaatt
      121 tgcactactg cgcctgtttc caatgtagcc ggttttttat ttgatccttg agtatcaccc
      181 ttaaaatttg gagctgtttc gatgattttg agttcaacaa cttgtggaac ttctacgccg
      241 atagctttac cattatggaa aagcacatct accatcatac catcaagcat ccattttttc
      301 gcctcaccta catcatcatc actaatagct acttgttcat atgtttgcgt atccataaat
      361 tggcaatttt caccatcatc ataaagatac tgcatagttt tatcttctaa atttggagct
      421 tcacatttat cacctgcatg gaaagttttt tcaagtactt taccatcaat aaaagatttg
      481 attttaatac gcacaaaagc aggacctttg cctggtttta catgctgata ctcaactatt
      541 ttaaaaggaa ttccatcgat ttctatttta agtccctttt ttaaatcacc cattgaataa
      601 gatgccataa atttcctttg ttaaaaaata aaaaacaatt ttatcaaatt ttgattgata
      661 tcacaataaa attattttat ttgatgaaaa aataagtaaa attacgttaa aatccaaatt
      721 taaagcatag taaatgctcg cttcttttta ggagaggaaa gtccgagctg ctaaagacaa
      781 acattccatc taacagatgg ctagggtaac ctaagggata gtgcaacaga aagaaaacta
      841 ccacgcaagt ggaaaaggtg aaacggcggg gtaaaagccc accagcgatt ttggtaacaa
      901 tttcggctat gtaaacccaa tgtgcagcaa gaagggatgg ttagcgtctt tgttttaacc
      961 cttcgcttga ttttgtttgc aaaaacaaaa ctagataaat gagcattcaa gacagaactc
     1021 ggcttatcgc tatgcttttt taagatttaa aatatgtcaa cgctttttga aatttttgaa
     1081 tttcaacagc ttttgttttt ttcttttgtt caatcagtat aacagcttct tgcaaaagag
     1141 cttgaacttg ataaaataca tcatttgcat tttcttttaa aaaatcttct gaaggcgatt
     1201 ctttggctaa atttttaata aaagctttca tatcaagttc atcaagtaaa ttttcaagtt
     1261 tattgacatc ttcttggatt aatgcaagtt taaaatcact gagccactgt ttcattgtta
     1321 tgcacttctc tccaagcttc tagcaaacct ttggttacat ttataacttc attgattcta
     1381 tcttcgttat tttctaaatt tgccaaagat aaaagttgaa tttctcttgt ataaagcccg
     1441 cttaaataat gtgccacttc tccgcctttt tcatagttta aagtattaat aagctctata
     1501 aaaatagccg tggttctttt tacaaaatac actctttgtt ctatatcttc atttcttatg
     1561 gctactttag ctcttgcaca aaaacgcaaa attccctcat aaagcatttc aataagtttt
     1621 tgcggggact ctatccccac ttgattttga gaataagcat tataggctaa attattttgc
     1681 atctttttta tccttaatta ttagaattgt ttgccgcatt aatcatatta gtcacagtat
     1741 ttagctgttg attgagttta tttaaaatac tctcatattg caaccattga ttcgccattg
     1801 tatcatatct tgtatcaatc atagcctgag tcgagtcttt agaggtattt aatgatttaa
     1861 tatcatttgt caaactctca tcatattttg taattgaacc atcttttcca gtcatctctt
     1921 gcaacgtggc ttttaatttt gaaaaaatac ctttaccttc tataggctta gaggttatat
     1981 ttacgtcaga caaacctaat tccttgagaa tgttagcatc tcctttgatt gaaaaatccg
     2041 agctaccatc tccactaaaa ttcaacctaa accctgtaac attgttttga ttataggatt
     2101 caaccttaac ttttaagcct tcaatacctt tactgtttat atgattagct aaattttgaa
     2161 gcaattcttc ctctgttttc cctgttaatt taaaattagt accatcagaa tttttagaca
     2221 aatcatatgt ttgattatta aaaactatag taaaatctcc tggtttaaat tctaaaccat
     2281 tagtattacc tccattggaa ttaagatatt tacttaaact tcctgtctta attacctctc
     2341 ctgtgtgatt aatgtcttcg tatttagtaa tatttgaaaa aaaactttca gtagagtctg
     2401 gatcttcttt aactttttgt tcaaatttag aagaatcaaa actcaaagtg cctgcatcat
     2461 ttaaacttaa gccaaaatcc tgcatagaaa gcataacctt agtgtttact ttattaccat
     2521 ttgcatcttc agtagttcca tcaacaactt gagaatcaaa caaatcagca agaatgcttg
     2581 agcgtattga atttacttca ctgatgcctt gtaaagttcc ttttgttcca gtttcactat
     2641 tatagtcagt tgcagcatta agattggtta ctaaatcatt ataagcatcc accaaatctt
     2701 gcatggcttt tgtcacacct tcaaaatctt gctgtacatc aaaattaatt tcacctgttt
     2761 tatttaaagt taaagtcatt cctacaccaa gatcggtaac agtattactt gatctaaaca
     2821 tcttaatacc atcaagtgta aattctgcat tttgcgcagt ttggatatgc aaagaagcat
     2881 ccttaatgcc ataacctttt ttatccttat ctggatcaat agaagccgat acatctaatc
     2941 cccatccaag atcgtcgaat attttttctg catttatatc tttttgatat ttaccattcg
     3001 aatctttttt tcccgcatag aaacttatcg cactgtcttc gcctgtttct ttgctggtta
     3061 aagttaagcg gtaaggagtg cctttctctc ctgtgtttac aatcttagca acaatctctc
     3121 ctccactagc ttcattaatt ttatcagcta aatctctata ggttgtgttt ttatctaccg
     3181 taacagtata ttctttgcca tttgaaaaaa aagtaagatc ggcagttcca tttaattgtg
     3241 cattaacaaa accaccgtca tttgctaatc ctttactttg atacacatct ttttgtgcaa
     3301 gttgagtaac attgatattc atgctttgta aagcaacacc cgaattaacc gtaagacttg
     3361 ctggaggatt atcgctaata cttcctacaa cttttctttt cgcaaaaacc gtagcatcgg
     3421 ctaatgatga aacagccgtc tgaaaactta gtaatttagt tttgatttct gttaaatctt
     3481 tttgtttggt tgtattttct tcaatttttt tagtataagg atcaatacga gctttttgct
     3541 ctgcttcttt taatttatct atagtatctt gagttaaaac cccagaacca aatcctaaac
     3601 tagatagact accaaatgcc atttttaact ctccttatca aatatcattc ctatcacatc
     3661 cctaaaatac tcagctaatc tcatagcttc ttcactagga atttgacgga tttcccttcc
     3721 agtgcttttt tcagtcacgc taatatacat agaaccgatt ttatcactat aaccaaaacg
     3781 aacattggta tctagagaat ccatttgctc atttaacttt tttgtaatat cagccaactt
     3841 ttcactcaca cctcgttgct gtccatcatc gccttcttga ccttgacttc tatcggtttg
     3901 aatgtttaaa ctagcctgtg tctcacttgt tctttggcta atgtttgcca aagctgtatc
     3961 catttgccca tttgccttcg atatttccat tttaaaatcc tttttaaaat ttcctattgc
     4021 tagttaaaag cttatatcga caaatttata aatttatgaa cacttataaa gaaaatttta
     4081 tttttcaata ataaaaaaa
//
LOCUS       DAPIWJ010000110         3896 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.112, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000110 DAPIWJ010000000
VERSION     DAPIWJ010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3896)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3896)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3896
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.112"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..627)
                     /locus_tag="RJ259_001576"
     CDS             complement(<1..627)
                     /locus_tag="RJ259_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HDV7367254.1"
                     /translation="MDLKSLENNRLYILKRLGILKFLSIIEALLIGFLAFVFIRDALI
                     AVILAVFVGVFFFRFTAKKLKLAQKELQIDALNLFLRRFGAKFKKQSLSQKDFLKLGL
                     TKDLKEFKSQNCFEFKDFKIYDIQFLDENKRFFCGILLEILNANKNPSFENEEQIYIK
                     LTDKNFTLNHIFSKENRYLIATLSNPFFIDVKKDLESNFKDLEENLNSI"
     gene            complement(627..2435)
                     /gene="typA"
                     /locus_tag="RJ259_001577"
     CDS             complement(627..2435)
                     /gene="typA"
                     /locus_tag="RJ259_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HDV7367255.1"
                     /translation="MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDS
                     NDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQE
                     GVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFA
                     IVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGTNDNPLQLQVFTLGYDNFVG
                     KIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIA
                     GFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERL
                     EAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDG
                     VKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFR
                     SQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLF
                     IEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERAL
                     EWIEEDELVEVTPVNVRVRKRYLDPTQRKRMEKAKS"
     gene            2570..2893
                     /locus_tag="RJ259_001578"
     CDS             2570..2893
                     /locus_tag="RJ259_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367256.1"
                     /translation="MSKPLNEEIFVEFKSDLAERKNEVLLQVLELLETFRSDKNEKMA
                     RISSELTEILENEENLEKILNAKNLEELLNILIALNEDKMIKVYEDSYLKEKFPNVMV
                     DKFLK"
     gene            2911..>3896
                     /locus_tag="RJ259_001579"
     CDS             2911..>3896
                     /locus_tag="RJ259_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HDV7367257.1"
                     /translation="MMSNLAPQNDVLNLTPSKTSNTSSSFSKTSKNKEHESSDSKNST
                     QDDTESFLNSLLNSINETNEFLPDHMKISQKEVVNEAMSRLQKGAFDESDKISIFESA
                     SFMQILSLLDKLKTDTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLG
                     LNVKNIKVDRLLDLKATFPNLDKADFFKGAVDNVFKEIINNKISNVSKNLNHNLENTT
                     HTTSTHSMQKTNSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDTTDAKNT
                     LKNIKNDEFAKNLTEELNIKDKKNQDNLNKESKDLNKDFNKELNKNQEKNNL"
BASE COUNT         1354 a          642 c          564 g         1336 t
ORIGIN      
        1 tatagaattt agattttctt ctaaatcttt gaaattgctt tctaaatctt tttttacatc
       61 tataaaaaaa ggattgctta aagtagcgat aagataacga ttttctttag aaaagatatg
      121 atttaaagtg aaatttttat ctgtaagttt gatataaatt tgttcttcgt tttcaaagct
      181 aggatttttg tttgcattta aaatttcgag taaaattcca caaaaaaagc gtttgttttc
      241 gtccaaaaac tgaatatcat aaattttaaa atccttaaat tcaaagcagt tttgactttt
      301 aaattctttc aaatcctttg taagtcctag ttttaaaaag tctttttgac ttaaactttg
      361 ctttttaaat ttcgccccaa aacgacgcaa aaataaattt aaagcatcaa tttgcaattc
      421 tttttgtgcg agttttagtt ttttagctgt aaaacgaaag aaaaaaacac ctacaaaaac
      481 agctaaaatt actgcgatta aggcatctct tataaaaaca aaggctaaaa agcctataag
      541 taaggcttcg ataatgctta ggaattttaa gattcctaag cgtttaagta tataaagtct
      601 attattttct aagcttttta aatccattaa gattttgctt tttccattct ttttctttga
      661 gttgggtcaa gatagcgttt gcgaacacgc acatttacag gtgtaacttc tacaagttca
      721 tcttcttcta tccactctaa agctctttca agacttaatt ttctaggtgg cacaagcttg
      781 attgcatcat cgcttccgct tgctcttaca ttggtaagat tctttccttt gataggatta
      841 acatctaaat catttggacg agagtgctca cctataatca taccagtata aactttagtt
      901 tgaggctcta tgaaaagcac tccacgctct tgaaggttaa acaaagaata ccccaaagcc
      961 acgccatttt ccatagaaat taaagctcca ttgttacgct tttcaaccgc gccgctaaaa
     1021 ggacggaatt ctaaaaagct atgattcatc acgccttcgc ctttagtatc ggttaaaaat
     1081 tggcttctaa aacctataag tccgcgtgct ggaatttcaa actcaagtct tgtttgtcca
     1141 tctcctgttg gtgccatggt tttcatttca gcttttcttt tgccaagttt ttctattact
     1201 gcaccgctaa attcttcagg cacatcgata actaaatgtt caaaaggttc tgttttaact
     1261 ccatcttcaa cttttacgat aacttcaggt cttcccatgc aaaactcaaa accttcacga
     1321 cgcatatttt cagctaaaat agtgatttga agttcgcccc taccgcttac tttaaattta
     1381 ccttcgcctg tgctttcgta tttcatagca atattagttt tcatttcagc ttctaaacgt
     1441 tcagcgattt tatttgaagt tacatgtttt ccttcagttc ctgctaatgg tccatcattt
     1501 acagaaaata ctatgcttaa agtcggctct tcaatgtgta aaggatcaag tggcatagga
     1561 ttgtttggat ctacaacgct atcgcccaca tctaaagctt caaaacctgc tatagctacg
     1621 atatctccac ttcctgcttc ttcaatatcc attttttcta agcccataaa gccaatgagt
     1681 tttgaaattc taccatttac tttggtgcca tcagcttttg caagcattac gctttggttt
     1741 ttcttcacaa ccccattgaa aattctagca atgcctattt tacctacgaa attatcatat
     1801 cctaaagtga aaacttgaag ttgtaaagga ttatcatttg tgccacttgg tgctggaacg
     1861 cgttcaagta tggttttaaa aagtggctcc atattatcac tttcatcgtt tagatcaagc
     1921 ttagcataac cattttttgc tgcagcataa actatggcaa agtcaagttg ctcatcgttt
     1981 gcatctaggg ctacaaaaag atcaaaaatt tcattgatca ctctttcagg atcagcagct
     2041 ggtttgtcga ttttgttgat tacaactata ggtttaagcc ctaaagataa agctttttta
     2101 accacgaatt tagtttgtgg cataacgcct tcttgagcat ctactaaaag caaaactcca
     2161 tcaatcattt ttaaaacgcg ttctacttct ccgccaaaat cagcatgccc tggagtatct
     2221 atgatgttga tttttgtacc tttgtaattg atcgctgtat tttttgaaag tatggtaatg
     2281 ccgcgttctt tttctatatc gttgctatcc ataacgcgtt ctgaaatttg ttctctttcg
     2341 ctaaaggtgc ctgattgttt taacaattca tctaccatag tggttttacc atggtcaacg
     2401 tgagctataa ctgctatatt tctaatgttt tccaaatttt cttctccaaa gctaaatttt
     2461 taaaagctta gattatacaa aaatttaact taaactacaa agtatcaaaa cttggaacac
     2521 ttcttgcttc aaaaacttat gaaattaaaa ttttaaaaag gaagttaaaa tgtcaaaacc
     2581 attaaatgaa gagatttttg ttgaatttaa aagtgattta gctgagagaa aaaatgaagt
     2641 tttgcttcaa gttttagaac ttttagaaac ttttagatca gataaaaatg aaaaaatggc
     2701 aagaatttca agtgagctta cagaaatttt agaaaatgaa gaaaatttag aaaaaatttt
     2761 aaatgctaaa aatttagaag agcttttaaa tattttaatt gctttaaatg aagataagat
     2821 gattaaagta tatgaagatt cttatttgaa agaaaaattt cctaatgtaa tggtagataa
     2881 atttttaaaa taattttttt tgaaggaaaa gtgatgtcaa atttagctcc gcaaaatgat
     2941 gttttaaatc ttacgccgag taaaacttct aatactagta gttcctttag taaaacgagt
     3001 aaaaataaag aacatgaaag tagcgatagt aaaaattcaa ctcaagatga tacggaaagt
     3061 tttttaaatt ctttgcttaa ttctatcaat gaaaccaatg aatttttacc tgatcatatg
     3121 aagatcagtc aaaaagaagt tgttaatgaa gcgatgagca gacttcaaaa aggagctttt
     3181 gatgagagcg ataagataag cattttcgaa tctgcttctt ttatgcaaat tctttctttg
     3241 ttagataagc taaaaacaga tacagcagat gttaaactag caaatctttc tactcaactt
     3301 tcaagtctta ttaaaacaga ggctaatttt aatgctttaa aaggtgcatc aaatcttagt
     3361 gagcttttgg acatagctaa agatctgggc ttaaatgtaa aaaatattaa agtagatcgt
     3421 cttcttgatc ttaaagcaac ttttccaaat ttagataagg ctgatttttt taagggtgct
     3481 gtggataatg tttttaaaga aatcatcaat aataaaattt ccaatgtgag taaaaattta
     3541 aatcacaatt tagaaaatac aactcatact acaagcactc attctatgca aaaaacaaat
     3601 tctaaagata gcggttcttt gctttctcaa actttaaaaa atttagattc catactttca
     3661 tccaaagaaa gcaaacacga aaaaaacgat aaagttaaat caaaaataga agaagatacc
     3721 acagatgcta aaaatacttt aaaaaatatc aaaaatgatg agtttgcaaa aaatttaaca
     3781 gaagagttaa atataaaaga taaaaaaaac caagataatt taaataaaga aagcaaagac
     3841 ttaaacaaag attttaataa agagttaaat aaaaatcaag aaaaaaacaa tttaaa
//
LOCUS       DAPIWJ010000111         3810 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.113, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000111 DAPIWJ010000000
VERSION     DAPIWJ010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3810)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3810)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3810
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.113"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            1..867
                     /locus_tag="RJ259_001580"
     CDS             1..867
                     /locus_tag="RJ259_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDV7367258.1"
                     /translation="MEIFLDLLNTQSPTHTANNFSITQPNVSIVIKNLENKFDGILFE
                     RLGKKLLPTPKALELGKNWLKIIQAYYQSLEKLNDESMLLGEIKIASTQSISEHFLAP
                     ILFDFKAEFKNIEIRSQTQNSKECLNLLKNGNIEFAIIEAELDPALVEYENLEINFWQ
                     DDELIVATSDKKLNEKEFYIDELLEQKWILREVGSGLRDKFLNEIGASSKKLNIFLEL
                     DRMAAIKELVLQKKAISIFSKKSIEKELKNSTLYEIKLKNIDLKRKFYTLKRKNYNFN
                     RALEKFEKIFKS"
     gene            947..2815
                     /gene="rpoD"
                     /locus_tag="RJ259_001581"
     CDS             947..2815
                     /gene="rpoD"
                     /locus_tag="RJ259_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HDV7367259.1"
                     /translation="MNAKTQEAELEELFQENAKDYITYEKLVKYLTKQPSASTTKKVQ
                     ALMKKHKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS
                     DSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLI
                     NRERRVKELFKSFDDEEKSDDKLDELDIDEDEENETELESDEENTKKNSKKEDERTLK
                     VIEKFKALEKAKKDWLKTSKDKESGDELLDKLSIAFKKNILKEKLMDLGPTSKLISEI
                     VKSMETALKSDEEFDKELKRLEYRLPMFSDELKKRHADILKDITKLSKEEITERALET
                     TMVSTYMEIKKLFQTKEASEKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRL
                     VVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA
                     DQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITK
                     EPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIR
                     MRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEGWK"
     gene            complement(2831..3343)
                     /locus_tag="RJ259_001582"
     CDS             complement(2831..3343)
                     /locus_tag="RJ259_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HDV7367260.1"
                     /translation="MKKIYIIRHAKASKSEDIDDFERKLTKSGKEDLKKLFKNLASHE
                     IHPDLVLSSPAVRTAKTAKKIAKFYNFDKNRICFDERLYLCNVENLLKILQDIDDEFN
                     EVFLVGHNPSLMELGELLSSLCLASFPTSSILCLEFDIKEFKNLKKHSGKLVFFEHVR
                     KLKEEKDLGF"
     gene            complement(3340..3810)
                     /locus_tag="RJ259_001583"
     CDS             complement(3340..3810)
                     /locus_tag="RJ259_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HDV7367261.1"
                     /translation="MSYDYYNILGLNILFFNGAYWQLLSSMFLHGNLTHLILNMIVLF
                     QFGRMLETYLGALCFIFIYFIGGLLCSLLSVFYVYFDFKYFGENINVIGASGAICVLM
                     GFYAVIDKNSTKGLIVAILLMSFVPLLMGVNVAWYGHIFGFMCGYILAKIKEVK"
BASE COUNT         1637 a          554 c          545 g         1074 t
ORIGIN      
        1 atagaaatat ttttagatct tttaaacact caaagtccaa ctcatacagc caacaatttt
       61 tccataactc aacctaatgt ttcaatagta attaaaaatt tagaaaataa atttgatggc
      121 attttatttg aaagacttgg aaaaaaactc ttacctacac caaaagcttt agaactagga
      181 aaaaattggt taaaaattat acaagcctac taccaaagct tagaaaaatt aaacgacgaa
      241 agtatgctct taggggaaat aaaaatagcc tcaactcaaa gcatttctga acatttttta
      301 gctcctattt tatttgattt taaggcagaa tttaaaaaca tagaaattcg ctctcaaacg
      361 cagaattcaa aagaatgttt aaatttacta aaaaacggaa atatagaatt tgcaatcatt
      421 gaagcagaac ttgatccagc tttagtggag tatgaaaatt tagaaataaa tttttggcaa
      481 gatgatgaac ttatagtagc tacaagtgat aaaaaactca atgaaaaaga attttatatc
      541 gatgaacttt tggaacaaaa gtggatttta agagaagtag gctcaggctt aagggataaa
      601 tttttaaacg aaattggtgc aagctcaaaa aaacttaata tttttcttga acttgataga
      661 atggctgcga ttaaagaact tgttttacaa aaaaaagcaa tctctatttt ttccaaaaaa
      721 agcatagaaa aagaattaaa aaattcaaca ctttatgaaa ttaaattaaa aaatatcgac
      781 ctaaagcgta aattttatac cttaaaaaga aaaaattata attttaacag agctttagaa
      841 aaatttgaaa aaatattcaa atcataaaca taataaccga tttatataga aagttaagca
      901 atttttagat aaaatccaaa gcttatataa atttcaagga taatcaatga acgccaaaac
      961 tcaagaagct gaattagaag aattatttca agaaaatgca aaagattata tcacatatga
     1021 aaaattggta aaatatctta caaaacaacc aagtgcatca accactaaaa aagtgcaagc
     1081 attaatgaaa aaacacaaag tgcaactttt ttcagcagct gaaattgcac aaatgaaaaa
     1141 catagaagat gcaaaaagac ttcaagaaga aaaacaaaaa ctccaagata caagccttga
     1201 gaacgaattt gatttagcca atgaaaacga tttattagaa tggagcagat cagactctcc
     1261 tgttcgtatg tatttaagag aaatgggaca aattgcttta ttaaacaaag atgaagaaat
     1321 tgaaatttcc aaaaaaatag aacttggcga agatattatc attgatgctt tttgttctgt
     1381 accttatttg atagatttta ttttagatta taaagaacct ttaataaaca gagaaagaag
     1441 ggtaaaagaa ctatttaaaa gctttgacga tgaagaaaaa agtgatgaca aacttgatga
     1501 acttgatata gatgaagatg aagaaaacga aacagaatta gaatcagatg aagaaaatac
     1561 taaaaaaaac agcaaaaaag aagatgaaag aactttaaaa gttatagaaa aatttaaagc
     1621 tctagaaaaa gctaaaaaag attggctaaa aacatccaaa gacaaagaaa gcggagatga
     1681 acttttagat aaattaagca ttgcgttcaa aaaaaatatt ttaaaagaaa aattaatgga
     1741 tctaggccct acttcaaaac ttattagcga aatcgtaaaa tcaatggaaa ctgcactaaa
     1801 aagtgatgaa gaatttgaca aagaacttaa gcgtttagaa taccgcttac ctatgttttc
     1861 tgatgaactt aaaaaacgcc atgcagatat tttaaaagat attacaaaat tgagcaaaga
     1921 agaaatcaca gagcgagctt tagaaacaac catggtaagc acttatatgg aaattaaaaa
     1981 actatttcaa actaaagaag ccagtgaaaa aagctttgat cttgaaaaat cacgcttaaa
     2041 agaaattttg gagcaaatta aacgcggtaa aaaaatctct gatgaagcaa aaggaagaat
     2101 ggcaaaatca aacttgcgcc ttgttgtaag catagctaaa cgctacacaa atcgtggtct
     2161 gcctttctta gaccttatcc aagaaggaaa tataggtttg atgaaagctg tggataaatt
     2221 tgaatacaaa aggggttata aattttccac ttatgcaact tggtggatca ggcaagctat
     2281 ttcaagggct atagctgatc aagcaagaac cataagaatt ccaatccata tgatagaaac
     2341 catcaatcaa attaacaaaa ttatccgcga acatctacaa aaagatggaa aagaacctga
     2401 tgtcagtgtt atagctaaag aagtaggttt aagcgtagat aaggttaaac aagttattaa
     2461 aatcacaaaa gaaccaattt ctcttgaagc tccaatagga aatgaagatg atggtaaatt
     2521 tggagatttt gttgaagata gaaattcact ttctccaatg gatcatatct taaaggatga
     2581 tttaaaagaa caaattgatg aagttttaga tcaattaaac gatagagaaa aagcggtaat
     2641 tcgtatgcgt tttggtttaa tggatgatga aagtgataga actttagagg aaattggaaa
     2701 ggaacttaat gtcactcgag aaagagtgag acaaatagaa agctcagcta taaaaaaact
     2761 caaacaccct aaagtaggaa gaaaactaaa aaattatata gaaggttgga agtaagagtc
     2821 aatctcctta ctaaaaaccc agatcttttt cttcttttaa cttgcgtaca tgttcaaaaa
     2881 aaactaattt tccgctatgt ttttttaaat ttttaaattc cttaatatca aattctaaac
     2941 acaagataga agaagttgga aaagaagcta aacatagcga acttaataac tctccaagct
     3001 ccattaaact aggattatga cccactaaaa atacttcatt aaactcatca tcaatatctt
     3061 gcagaatttt tagcaaattt tcaacattgc aaagatacaa tctttcatca aaacaaattc
     3121 tatttttatc aaaattataa aatttggcta tttttttcgc tgttttagcg gttctaacag
     3181 caggacttga tagcaccaaa tcaggatgaa tttcatgcga agcaagattt ttaaaaagtt
     3241 tttttaaatc ttcctttcca ctcttagtaa gttttctttc aaaatcatcg atgtcttcac
     3301 tcttacttgc ttttgcatgt cttataatat aaattttttt cattttacct cttttatttt
     3361 agctaaaata taaccacaca taaacccgaa aatatgacca taccaagcaa catttacccc
     3421 cataagcaat ggcacaaaac tcataagtaa aattgccact ataagtcctt ttgtgctatt
     3481 tttatcaata acagcataaa agcccattaa aacacaaatt gcaccactag cgcctatgac
     3541 atttatattt tctccaaaat atttaaaatc aaaatacaca taaaaaacac ttaaaagtga
     3601 gcacaacaat ccgccaataa aataaataaa aataaaacac aaagcaccca aataagtttc
     3661 taacatacgc ccaaattgaa acaaaactat catatttaat ataagatgag ttaaatttcc
     3721 atgtaaaaac attgaactta aaagctgcca ataagctcca ttaaaaaata aaatattcaa
     3781 accaaggata ttgtaataat cataagaaat
//
LOCUS       DAPIWJ010000112         3639 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.114, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000112 DAPIWJ010000000
VERSION     DAPIWJ010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3639)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3639)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3639
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.114"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..243
                     /locus_tag="RJ259_001584"
     CDS             <1..243
                     /locus_tag="RJ259_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HDV7367262.1"
                     /translation="KVYRNLDQIEEKIDTLILFRKGEVALEILPKLVEKNIKNLWLQL
                     DISNETAKEECKKLDINFIQNRCIMLEYPHFKTKEK"
     gene            243..1454
                     /locus_tag="RJ259_001585"
     CDS             243..1454
                     /locus_tag="RJ259_001585"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HDV7367263.1"
                     /translation="MLELNKIYKAKQQISGFVNKTPFIYSSFLSDICQSEIYLKNENL
                     QITGAYKIRGAYNKIANLSTEQKQHGVIAASAGNHAQGVAISAKKFSIKAVIVMPEST
                     PLLKVSATKALGAEVILRGDNFDEAYAFATSYAKENNLSFIHPFEDEFVMAGQGTLML
                     EMLDEISDLDMIIAPVGGGGLISGISSTAKQINPNIKIIGVGAKGAPAMYESFHAKKI
                     KNAKSVRTIADGIAVRDANPINFNIILECVDDFIQVDDEEIANAVLFLLEKHKIIVEG
                     AGAASVAALLHQKINTQNHKKIGVVLSGGNIDAQMLNIIIEKGLFKSYRKMQIYVTLV
                     DKPGALLHLTDSLKIANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKIL
                     TQKAFNFYESF"
     gene            complement(1451..2176)
                     /gene="truA"
                     /locus_tag="RJ259_001586"
     CDS             complement(1451..2176)
                     /gene="truA"
                     /locus_tag="RJ259_001586"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HDV7367264.1"
                     /translation="MMKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHLGIFSPL
                     LMASRTDKGVHASYAVASVECGDYFTNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVR
                     FDVKSREYRYIFSHASYSPFMASYVHFYPKFDLGKANELLGFFVGKKDLKFFCKSGGD
                     NKTTLREIFIARAYAYKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQI
                     EAKKQYNHFLAPPNGLYLSRICY"
     gene            complement(2173..3198)
                     /locus_tag="RJ259_001587"
     CDS             complement(2173..3198)
                     /locus_tag="RJ259_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HDV7367265.1"
                     /translation="MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEI
                     SFLDLLKLYGFMLPRILIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKF
                     FLKIASLISAFMLVVALVMIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFI
                     EKQDSDKYENIIMYRPKHKADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQS
                     IFSGEFDTLVVNTQFNTDNLQTKKFYEYWNDLNENLQRAREFVIYTTIALFPLASTLF
                     ALCFGLVTYRYEKGYVYLGMFGVIAIYFGLLSSFSQPPILACLGIFSLSLFVSAYCFK
                     KMILSRY"
     gene            complement(3198..>3639)
                     /locus_tag="RJ259_001588"
     CDS             complement(3198..>3639)
                     /locus_tag="RJ259_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HDV7367266.1"
                     /translation="DIKLKAVPQILLWSAFLFAFFYAFRESEILHFLIFKEFSGGFLL
                     NAFSFGGFVFLLKSLVFFLMNFQKKDEILENLGDADIIIMSCIGGILGFEYGFLVLFI
                     ASILTLPFFIFFRIKAIKEQELAMIPFLNIAFVAVLFYKNLGLF"
BASE COUNT         1437 a          593 c          503 g         1106 t
ORIGIN      
        1 aaagtttata gaaatttaga tcaaatagaa gaaaaaatcg atacacttat actttttaga
       61 aaaggtgaag tggcgctaga aattcttcct aagcttgttg aaaaaaatat taaaaaccta
      121 tggcttcaac ttgatattag taatgaaaca gccaaagaag aatgtaaaaa attagatata
      181 aattttatac aaaatcgttg cattatgcta gaatatccgc attttaaaac aaaggaaaaa
      241 tagtgttaga gcttaataaa atttacaaag caaaacaaca aatttcagga tttgtaaaca
      301 aaactccttt catatactct tcttttttaa gtgatatttg tcaaagtgag atttatctta
      361 aaaatgaaaa tttacaaatt acaggtgctt ataaaattcg tggagcttac aataaaatag
      421 ccaatcttag cactgaacaa aaacaacatg gagtcattgc agcaagtgcg ggaaaccatg
      481 ctcaaggcgt ggccattagt gcaaaaaaat ttagcattaa agcagttatc gtaatgccag
      541 aatccactcc actcttaaaa gtttctgcta caaaagcctt aggagcagag gtgatactca
      601 gaggagataa ttttgatgaa gcctatgctt ttgcaacctc ttatgctaaa gaaaataatc
      661 ttagctttat ccatcctttt gaagatgaat ttgtaatggc aggacaagga actttaatgc
      721 ttgaaatgct tgatgaaata agcgatcttg atatgattat tgcacctgtt ggaggcggag
      781 gacttataag cggtatctca agtacagcta aacaaatcaa tcctaacatt aaaatcatcg
      841 gagttggagc caaaggagct cctgcaatgt atgaaagttt tcatgctaaa aaaatcaaaa
      901 atgcgaaaag cgtacgcact atagccgatg gtattgctgt gcgtgatgca aatcctataa
      961 attttaacat tatcttagaa tgtgtagatg attttatcca agttgatgat gaagaaatag
     1021 ctaatgcggt attgttttta ctcgaaaaac ataaaatcat agtcgaaggt gcgggagctg
     1081 cgagtgtagc cgccctgctt catcaaaaaa taaatacaca aaatcataaa aaaattggcg
     1141 tagttttaag cggaggcaat atcgatgcac aaatgctaaa tatcatcata gaaaaaggtt
     1201 tatttaaatc ttacagaaaa atgcaaattt atgttacttt agtagataaa cctggggcat
     1261 tattacacct tacagacagc ttaaaaatag ccaatgcaaa tatagtaaaa atcgactatg
     1321 atagattttc taccaagctt gattatggcg atgcgatgat ttcaattact ctagaaacca
     1381 aaggtaaaga acatcaagaa gaaataagaa aaattttaac ccaaaaggct tttaatttct
     1441 atgaaagttt ttaataacat atacggctta aataaagccc atttggcggt gctaaaaagt
     1501 gattgtattg ctttttagcc tcaatctgtt ctttgagttc tttttcactc atttttcctt
     1561 ctaaaacttt taaaacgctt gctacgctta atctaatttg ccctcttaaa aaaccattag
     1621 ctttaaaatg aaaaatgcta aaatctttat aagcataagc tctagcaata aaaatttctc
     1681 ttaaagtcgt tttattatcc cctccacttt tgcaaaaaaa ctttaaatcc ttttttccta
     1741 caaaaaaacc caaaagttca ttagctttac ctaggtcaaa tttaggataa aaatgtacat
     1801 aagaagccat aaaaggacta taagaagcgt gagaaaatat atagcggtat tctctacttt
     1861 ttacatcaaa tcttacttca aaatcatctt ttactttttc aatttttttg atatggataa
     1921 aaggatggga aaatttatta agttgttttt gaagatattc taaatttgta aaataatctc
     1981 cacactccac actagctaca gcatagcttg catgtactcc tttatctgta cgagaagcca
     2041 tcaaaagagg tgaaaaaata cccaaatgcg ataaggcccc acttaaagca tcttgaacac
     2101 cttttttatg aggctgagta gcagaaccta aaaaagcaga gccatcataa gaaaatataa
     2161 tttttatttt catcaatatc gactcaaaat cattttctta aaacaataag ccgaaacaaa
     2221 taaacttaaa gaaaaaattc caagacaagc caaaattgga ggttgagaaa aagaacttaa
     2281 aagtccaaaa tatatagcaa tcactccaaa catacctaaa tacacatagc ctttttcata
     2341 acgataagta accaaaccaa aacaaagcgc aaaaagcgta ctagcaagtg gaaacaaggc
     2401 tatagttgta taaatcacaa attctcttgc tctttgtaga ttttcgttta aatcattcca
     2461 gtattcataa aatttctttg tttgaagatt gtctgtatta aactgagtat ttactactaa
     2521 agtgtcaaat tctccactaa aaatactttg accttgctca aaattataca ttttgccttg
     2581 atttaagcta aaagcaaagc tatcatcttt tctttgcaca tgcgcttctt tggctatgat
     2641 aagttgttct ttatcatctg ctttatgttt agggcgatac ataattatgt tttcatactt
     2701 atcactatct tgtttttcta taaaaatcat ccagtctaaa aatttttgtc caaattctcc
     2761 tgttttgtag ttaaatttca cttgagtgct tttatagttt acaaagttat cctgaagttc
     2821 aaatactata ggtatcatta ccaaagctac aacaagcata aaagcactaa tcaagcttgc
     2881 aattttaagg aaaaattttg ccaaaatcat tggtgaaaat cccaaagtaa aaagcactat
     2941 gctttcattt tccttagaaa gcctaaacaa agccaaagtt aaagaaataa aaaaagatat
     3001 aggcaaggta aaaattaaaa ttctaggcaa cataaaccca taaagcttta aaagatccaa
     3061 aaaactaatc tctatacttg aagtaagttt tgcaagttga ataaaaaaca ccatagatac
     3121 aatagcaaaa agtacaaaaa atatagacaa attcgtactt aaaaattgat ttaaaacata
     3181 tcttaaacta agcttcatta gaataatcct aagtttttat aaaataaaac tgccacaaaa
     3241 gcgatattta aaaagggtat catagcaagt tcttgctctt ttattgcttt aattctaaaa
     3301 aaaataaaaa aaggcaaagt caaaatagaa gctataaata atactaaaaa tccatactca
     3361 aaacctaaaa ttccacctat acaagacata ataataatat cagcatcacc caaattttct
     3421 aaaatttcat cttttttttg gaaattcatt agaaaaaaaa ccaaactttt taataaaaaa
     3481 acaaatcctc caaaactaaa agcatttagt aaaaaacctc cactaaactc tttaaaaatc
     3541 aaaaaatgta aaatttcact ttccctaaag gcgtaaaaaa aagcaaataa aaaagcactc
     3601 caaagtaaaa tttgtggtac ggctttgagt ttaatatca
//
LOCUS       DAPIWJ010000113         3636 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.115, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000113 DAPIWJ010000000
VERSION     DAPIWJ010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3636)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3636)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3636
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.115"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..840)
                     /gene="selD"
                     /locus_tag="RJ259_001589"
     CDS             complement(<1..840)
                     /gene="selD"
                     /locus_tag="RJ259_001589"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(790..792),aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HDV7367267.1"
                     /translation="MQYKNQNLTHFVKAAGUAAKLSPGGLKTILNFMQKTPALLSDIG
                     NNEDASVYQISPDLALVQTLDFITPIVDSAYHFGAIAAANALSDVFAMGAEVINALNI
                     VGFDTCNHDLNILKELLEGANDKVKECNALVVGGHTIESTELFFGLSVTGKVHPSKFI
                     ANNTSKIGDCIILTKPLGTGILSTALKAQMLNQKHLDIMLKNMIELNYKASQIALKFH
                     PSAMSDVTGFGLLGHLKEMLNKNISFEIFESELPFLDGVKEYFNMGLIPAGAYKNLEF
                     IKEL"
     gene            complement(850..1422)
                     /gene="yedF"
                     /locus_tag="RJ259_001590"
     CDS             complement(850..1422)
                     /gene="yedF"
                     /locus_tag="RJ259_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HDV7367268.1"
                     /translation="MKIDCRNLSCPQPIVETKNALEKLQENEILEIVLNSIISKNNVV
                     KFLNSLNLNPVVDENAQEFCIKVQKKNFDSSEVNIHDYNVLFLKTDKVGEGELGQNLL
                     VGFLSTLKNLDHAPSKILCVNESVLINVDENHKAHLAMKELENLGIEIISCGACLEFF
                     NKSKELKIGNIGNAYEILNELFGKAKIITL"
     gene            complement(1533..3635)
                     /gene="ccaA"
                     /locus_tag="RJ259_001591"
     CDS             complement(1533..3635)
                     /gene="ccaA"
                     /locus_tag="RJ259_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate chemotaxis receptor CcaA"
                     /protein_id="HDV7367269.1"
                     /translation="MFKSLNIGLKLIFSVAAVVVIGLVILISLITKQVSQNITKNTED
                     ILASITKEYATQTQGIFGEMIALNKSISGTLTEMFRSTSKEDLDIDNITNIITNTFDN
                     SAYSNFTYLYLIDPPEYFKEESKFFNTQSGKFVMLYADEEKDNKGGIKAIQASDEIAN
                     LQVVQDILKKAKYGENKVYIGRPIKMNLEGQDFDAVNVAIPIFDRKNQVVGVIGMTLD
                     FSDIATYLLDPKGQKYDGELRVLLNSDGFMAIHPNKNLVLKNLKDINPNKGAQETYKA
                     ISEGKNGVFNYIASDGDDSYAAINSFKVQDSSWAVLVTAPKYSVFKPLKKLQLIILGA
                     SFIFIFVVLGVVYYCVRKIVASRLPVILSSLESFFRFLNHEKIEPKAIEIRANDELGA
                     MGRIINENIEKIQISLEQDQNAVDESVQTAREIEKGNLTARITKNPINPQLVELKDVL
                     NRMLDVLQSKIGSNMNEINRVFDSYKALDFSTEVFNAKGEVEITTNILGKEIKKMLLA
                     SSNFAKDLANQSEELKNSMQKLADGSNAQASSLEQSAAAVEEINSSMQNVSGKTVEVA
                     SQADDIKNIVNVIKDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKS
                     LSEIEANINILVQSVNEVAESVKEQTAGITQINDAIAQLETVTKENVEVANVTNNITN
                     EVNQIAAAILEDVNKKRF"
BASE COUNT         1202 a          630 c          445 g         1359 t
ORIGIN      
        1 aagttctttt ataaattcta aatttttata agctccagca ggaattaaac ccatattaaa
       61 atactctttt actccatcta aaaaaggaag ttcactttca aaaatttcaa aagaaatatt
      121 tttatttagc atttctttta aatgtcctaa aagtccaaaa cctgtaacat cactcatggc
      181 acttggatga aatttaagag caatttgact ggctttataa tttaactcta tcatgttttt
      241 aagcattata tctaaatgtt tttgatttaa catttgcgcc tttaaagctg tacttaaaat
      301 tcctgttcct aaaggcttgg ttaaaatgat acaatctccg attttagaag tattattagc
      361 aataaattta ctaggatgta cttttcctgt aacactaagt ccaaaaaaaa gctcggtgct
      421 ttctatagta tggccaccca cgactaaagc attacattct ttaactttat catttgcacc
      481 ttctaaaagc tcttttaaga tgtttaaatc atgattgcaa gtatcaaaac ctactatatt
      541 taaggcatta attacctctg cacccatagc aaaaacatcg cttaaagcat ttgctgcagc
      601 aatagcacca aaatgataag cactatctac tataggagtg ataaaatcaa gcgtttgcac
      661 caaagctaaa tcggggctga tttgatatac gcttgcatct tcattatttc cgatatcact
      721 aagtaaagca ggagtttttt gcatgaaatt taaaattgtt ttaagaccac ccgggcttaa
      781 tttcgctgct cagcctgctg ctttaacaaa atgcgttaaa ttttgatttt tatattgcag
      841 tgtttttcct tatagagtaa tgatttttgc tttaccaaaa agctcgttta aaatttcata
      901 agcattgcct atatttccta ttttaagttc tttgctttta ttaaaaaatt ctagacaagc
      961 tccacaactt atgatctcaa tacctaaatt ttcaagttct ttcatagcta aatgtgcttt
     1021 atgattttca tcaacattga ttaaaacact ttcatttacg caaagaattt tacttggagc
     1081 atgatctaaa ttttttaagg tacttaaaaa tcctacaagt aaattttgtc ccaattcacc
     1141 ctcacccact ttgtcggttt ttaaaaataa aacattataa tcgtgaatat ttacttcact
     1201 agaatcaaaa ttcttttttt gtactttgat gcaaaactct tgtgcatttt catctacaac
     1261 agggtttaaa tttaaagagt taagaaattt tacaacatta ttttttgaaa taatagaatt
     1321 taaaacaatt tctaaaattt cattttcttg aagtttttca agagcgtttt ttgtttcaac
     1381 tataggctga ggacaagata gattgcgaca atcaattttc attatttttc cttgatatta
     1441 gctttgaaaa ataatattat tttattactt gttttgtgtt taaaaatttt aaataatata
     1501 gaaaaaattt aaaagctcaa aaatgagctt ttttaaaatc tttttttatt cacatcttca
     1561 agaattgccg cagcaatttg attgacttca tttgttatat tattggtgac atttgcaact
     1621 tcgacatttt ccttagttac agtttcaagt tgtgctatag catcgttaat ctgtgtgatt
     1681 cctgctgttt gttcttttac agattctgct acttcattta cgctttgaac aagtatatta
     1741 atatttgcct cgatttcaga taaggatttt cctgttcttt ccgcaagctg tcttacctca
     1801 tctgcaacaa ctgcaaaacc acgcccatgt tctccagcac gtgcagcttc aatagctgca
     1861 tttaaagcaa gaagattcgt ttgctcagcg atatctttaa tcacattgac aatatttttt
     1921 atatcatcag cttgtgaagc aacctcaact gtttttccac ttacattttg catagaagaa
     1981 ttaatctcct ccacagctgc agccgattgt tctaaagaac tcgcttgtgc attagagcca
     2041 tcagcaagtt tttgcataga attttttaac tcttctgact gattggctaa atctttagca
     2101 aaatttgaag aagccaaaag catcttttta atttctttgc ctaaaatatt agttgtaatc
     2161 tcaacttcac ctttagcatt aaatacttct gtactaaaat caagagcctt ataactatca
     2221 aaaactctat taatttcatt catattagaa ccaattttac tttgtaaaac atcaagcatc
     2281 ctattaagaa catctttaag ttctactaat tgaggattta taggattttt agtaattctt
     2341 gcagttaaat tacccttttc gatttctcta gcagtttgca ccgattcatc tacagcattt
     2401 tgatcttgtt ctaaagatat ttgaatcttt tcaatatttt catttatgat tcttcccatt
     2461 gctcctagct catcattagc acgaatttca atagccttag gttcaatttt ttcatgattt
     2521 aaaaaacgga aaaatgattc taaagaacta agaatcacag gcaatctaga tgcgacaatt
     2581 tttcttacgc aataataaac cactcctaaa acaacaaaaa taaaaataaa agatgcacca
     2641 agaataatta attgtaattt ttttaagggt ttaaatactg aatatttagg agcagttacc
     2701 aaaactgccc aagaactatc ttgcacttta aaactattaa tcgcagcata agaatcatca
     2761 ccatcagaag ctatatagtt aaaaactcca ttttttcctt cacttatggc cttataagtt
     2821 tcttgtgcac ctttattagg attgatatct tttaaatttt ttaaaactag atttttattt
     2881 ggatgtatcg ccataaaacc atctgaattt aaaagaactc ttaattcacc atcatatttt
     2941 tgacctttag ggtctaaaag ataagtagca atatctgaaa aatctaaagt catgcctatg
     3001 acacctacaa cttgattttt tcgatcaaaa ataggtatag caacatttac agcatcaaaa
     3061 tcttgacctt ctaaattcat cttaatagga cggcctatat atactttatt ttccccatat
     3121 tttgcttttt ttaatatatc ttgcacaact tgcagattag ctatttcatc actagcttgt
     3181 attgctttta ttccgccttt attatccttt tcttcatcag cgtaaagcat aacaaatttt
     3241 ccactttgag tattaaaaaa tttactctct tctttaaagt attctggcgg atcaataaga
     3301 tataaataag taaaattaga ataagcacta ttatcaaaag tattggttat aatatttgtt
     3361 atattgtcta tatctaaatc ttctttagag gttgatctaa acatttctgt taaagtacct
     3421 gaaatacttt tatttaaagc gatcatttcc ccaaaaattc cttgagtttg agtagcatat
     3481 tctttcgtga tagaagcaag aatatcttct gtatttttgg taatattttg acttacttgt
     3541 tttgtgatta atgaaattaa aataacaagt ccaataacaa caacagctgc cacagaaaaa
     3601 ataagtttta aacctatatt taaagattta aacatc
//
LOCUS       DAPIWJ010000114         3582 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.116, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000114 DAPIWJ010000000
VERSION     DAPIWJ010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3582)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3582)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3582
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.116"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(134..661)
                     /gene="tpx"
                     /locus_tag="RJ259_001592"
     CDS             complement(134..661)
                     /gene="tpx"
                     /locus_tag="RJ259_001592"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HDV7367270.1"
                     /translation="MSIVNFKGNPVKLKGNSVEVGADAPKVNLKAKDLSVIEIGAAGK
                     TQIILSVPSLDTPVCATEAREFNKKVASYNGAEVIVVSMDLPFAMGRFCSTEGIENLS
                     VASDFVAKEFGEKYGVLINEGALEGLLARAVFVIKEGKVAYKELVNEITEMPDIAKLD
                     AFFGGSSCCGGCGCH"
     gene            complement(760..1497)
                     /gene="peb2"
                     /locus_tag="RJ259_001593"
     CDS             complement(760..1497)
                     /gene="peb2"
                     /locus_tag="RJ259_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family adhesin PEB2"
                     /protein_id="HDV7367271.1"
                     /translation="MKKILILSLAASFLNAEILVYGPGGPAPVLKELALKFEEKTKEK
                     VIVTAGPTPAWVDKAKENADLIFSGNTSMMDDFAKKIPSLSLENLSVLNVRPSGIIVR
                     PNNPKNIKNFEDILKDGINVMVVDGAGQVGLYEDMALKSAKRENLVKLRKNIKIYAKN
                     SKAAVDEWNNNPNIDALIIWSHWAKALGDDKALFIKDKNAVIYRAAEIAPTKKGLENK
                     KALEFVDFIKSQEAQKVWKKYTWKEVK"
     gene            complement(1536..3566)
                     /locus_tag="RJ259_001594"
     CDS             complement(1536..3566)
                     /locus_tag="RJ259_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HDV7367272.1"
                     /translation="MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLS
                     KGVAPQKIMLLTFTNKASKEMIGRLGKFFDKNITSKILAGTFHSTAYTLLRNADKNIA
                     LKQASELKTLLKSVYEKRTFRHLSDIKPYQSSYLYDLYSLFQNKAHNQDFYTWFCQNY
                     EDQSIYAEIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEEKYEFDEILVDEYQDT
                     NTLQSSLIEAFHSKSLFCVGDYDQSIYAFNGADINIIGGFKDRFKDAKIFSLNKNYRS
                     SRSILALANKVILNNERLYPKELIVTRNDEFKAPSLLTFEELFDQYQNIAKMILTSGV
                     SLEEIAVIFRNNSSADGVEVALREQGIASVRKGSGSFFESLEVKAFSSMLALVVNPKD
                     IMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRNYQLG
                     LFADLEELASETRFKFESEFDAHPILRLSKINDLCARNLEKIYLFLKKAMEIKHSLTL
                     VNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDI
                     YKYYNFLTLGASEMSSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMGGSL
                     EEERRLFYVAVTRAKNILYLSYAKYDKNKKTSFAPSRFLIEAGLCKGELTID"
BASE COUNT         1186 a          678 c          401 g         1317 t
ORIGIN      
        1 tgtccttttt atattattct tacacaaaat aaatattaaa aataatcaac ttaacaatta
       61 aaatataatc aacttaaaat aataaaaaaa tgaagatata aaaattaagc cctaagaatg
      121 ggcttaatca aaattaatgg caaccacaac caccgcagca gctagaacca ccaaaaaatg
      181 catcaagttt tgcaatatct ggcatttctg tgatttcatt tacaagttct ttatatgcca
      241 ctttaccctc tttaatcaca aatacggcac gagctaaaag cccttctaaa gcaccttcat
      301 ttatcaaaac accatatttt tcaccaaatt cttttgccac aaaatcactt gcaacactta
      361 aattttcaat accttctgta ctgcaaaatc ttcccatagc aaaaggtaag tccatactta
      421 ctacaatcac ttcagcacca ttgtaactgg ctactttttt attaaattct ctagcctctg
      481 tagcacaaac tggtgtatct aaacttggaa cacttaaaat gatttgagtt ttacccgctg
      541 caccgatttc aatcacgctt aaatctttag ctttaagatt taccttagga gcatctgctc
      601 caacttctac tgaatttcct ttaagtttta caggatttcc tttaaaattt actatactca
      661 tttaatttcc ttttttgata ttttaaacat tattgcaatt aatgttttag gagtaattat
      721 atcctataaa tattaattat tttttaattt cactcaaaat tattttactt ctttccaagt
      781 atattttttc cacacttttt gagcttcctg actcttaata aaatctacaa attctaaagc
      841 ttttttattt tctaaacctt tttttgtagg agctatttca gctgcacgat aaatcactgc
      901 atttttatct ttgataaata aagctttatc atcgcctaaa gcctttgccc aatgagacca
      961 aatgattaaa gcatcaatat ttggattgtt attccactca tctacagcag ctttggaatt
     1021 tttagcataa atttttatat ttttacgtaa ttttaccaaa ttttctcttt ttgcactttt
     1081 taaagccata tcttcataaa gtccaacttg tcctgcacca tcaaccacca taacatttat
     1141 gccatctttt aaaatgtctt caaaattttt aatatttttt ggattatttg gacgcacgat
     1201 aatacctgat ggacgcacat ttaaaacgct taaattttcc aaacttaaac ttggaatttt
     1261 tttagcaaaa tcatccatca ttgaagtatt gcctgaaaaa atcaaatctg cattttcttt
     1321 tgctttgtct acccaagctg gagttggacc tgcggttaca atcacctttt cttttgtttt
     1381 ttcttcaaat tttaaagcaa gctcttttag cacaggagca ggaccacctg gaccataaac
     1441 taaaatttca gcatttaaaa aacttgctgc taaacttaaa attaatattt ttttcataaa
     1501 ataaaccttt ctttgataat ataaaggaaa ttgtatcaat ctatagttaa ctctcccttg
     1561 caaagccctg cttctataag aaaacgagaa ggagcgaaag aagttttttt atttttatca
     1621 tatttagcat agcttaaata aagtatattt tttgccctag ttactgcaac ataaaaaagc
     1681 cttctttctt cttctaagct tccacccatt cccataagct tttgattagg aaagcgacct
     1741 tgcgcaagat caatcacaaa aacaagatca aattccaagc ccttacttgc atgtacgcta
     1801 agcaaattaa ctcctttgcc actactcatt tcacttgcac ctaaagttaa aaaattataa
     1861 tacttataaa tatcgctata attttttgta agctctttta agacattaaa ttttgtttct
     1921 attttttcta aattttcact ctttcttaat aaatccacct gccctgcttt gttcgtcgct
     1981 cttttagttg caagttcttc gcaaatttct ctataaaaag aattttcgca aattaaattg
     2041 actaaagtca aagaatgttt tatttccata gcttttttta aaaaaagata gattttttcc
     2101 aaatttctag cgcacaaatc attgattttt gaaagtctta aaataggatg tgcgtcaaat
     2161 tcactctcaa atttaaaacg agtttcgcta gctaattctt ctaaatctgc aaaaagccca
     2221 agttgataat ttcttttttg atgattttgc aaatttacat ttttatcagg atctaaaaaa
     2281 ccttttatta aatttccatg ccctaatttt aaaagtgcgt caaaaatttc ttttgctaaa
     2341 actccaccca cacctttggt atattgaacc aaatgaataa aagccatgat atccttagga
     2401 tttaccacaa gcgcaagcat ggagctaaaa gctttaactt ccaaactttc aaaaaaactt
     2461 ccacttccct ttctcacact tgcaatgccc tgctccctta aagctacttc aaccccatca
     2521 gcacttgagt tgttgcgaaa aatcacggca atttcttcca aacttactcc gcttgtaagt
     2581 atcattttgg ctatattttg atactgatca aataattctt caaaagtaag caaagatggg
     2641 gctttaaact catcatttct tgtaacaata agttcttttg gatataatct ttcgttattt
     2701 aaaatcactt tattagccaa agctaaaata cttcttgatg aacggtagtt tttatttaaa
     2761 gaaaaaattt ttgcatcttt aaaacgatct ttaaacccac ctatgatatt aatatccgct
     2821 ccattaaaag cataaatact ttgatcataa tcccctacgc aaaacaaact tttactatga
     2881 aaagcctcta ttaaagaact ttgcaaagta tttgtgtctt gatattcatc tactaaaatt
     2941 tcatcaaatt catatttttc ttcttttaaa agatctttta gattgataag caagtcatta
     3001 aaatccacat aattaaaacg ctttttttca ttatcatatt cttttaaaat atcttcataa
     3061 atttcagcat aaatactttg atcttcatag ttttgacaaa accaagtata aaaatcttga
     3121 ttgtgtgctt tgttttgaaa caaagaataa agatcgtata aataacttga ttgataaggt
     3181 tttatatcac ttaaatgcct aaaagttctt ttttcataga cacttttaag tagagttttt
     3241 aactcgcttg cttgctttaa ggctatattt ttatccgcat ttctaagtaa ggtataagcc
     3301 gtactatgaa aagttcctgc aagtatttta ctggtaatat ttttatcaaa aaatttccct
     3361 aaacgcccta tcatttcttt gctggcttta tttgtgaaag tcaaaagcat gattttttga
     3421 ggtgccactc ccttgcttaa aagataagaa attcttgcaa caatagtaga agtttttccc
     3481 gtccctgcac ttgcaataac aagattgtgt ccaaaatcag cagtagcggc aagatattgt
     3541 tcattattta attttgaaag tggcattatt ttccttataa aa
//
LOCUS       DAPIWJ010000115         3573 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.117, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000115 DAPIWJ010000000
VERSION     DAPIWJ010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3573)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3573)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3573
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.117"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..188
                     /locus_tag="RJ259_001595"
     CDS             <1..188
                     /locus_tag="RJ259_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367273.1"
                     /translation="IEVKFTQDDYEVSERLDRKKLEKILKTIEFYHLKNGISSDFQID
                     LICIKNDVIQFCENISF"
     gene            245..559
                     /gene="trxA"
                     /locus_tag="RJ259_001596"
     CDS             245..559
                     /gene="trxA"
                     /locus_tag="RJ259_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HDV7367274.1"
                     /translation="MGKYIELTSDNFAQAKEGVALVDFWAPWCGPCRMLAPVIDELAN
                     DFDGKAKICKVNTDEQGDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNS
                     LL"
     gene            692..1630
                     /gene="trxB"
                     /locus_tag="RJ259_001597"
     CDS             692..1630
                     /gene="trxB"
                     /locus_tag="RJ259_001597"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HDV7367275.1"
                     /translation="MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSS
                     EIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTE
                     LAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA
                     LYLANICSKIYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVAGVKV
                     KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGL
                     FAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH"
     gene            complement(1668..3449)
                     /locus_tag="RJ259_001598"
     CDS             complement(1668..3449)
                     /locus_tag="RJ259_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoX family phosphatase"
                     /protein_id="HDV7367276.1"
                     /translation="MERRLFLKGSALGSMVAFFASSNLSAVILKDKDLLGFKAVSAST
                     QDKVIVPQGYEAKVLISWGDPLFSKAKPYDENKIIDMNAVKNAHLVFGDDNDGMSFFP
                     LSKNRGILAVNNEYINPEIMFNHHGKNLSKEDVLYEQASVGVSILEIEKKGDDWIVVL
                     DSKYNRRIDANTKMQVSGAAKKEVLKNEKFVHGTFANCANGQTPWGTYITCEENFDDF
                     FGSSDENLEFNDAFKRYGFNKTSLYGWEKFDERFDLAKNIDEANRFGWIVEINPFDAK
                     STPVKRTSLGRFKHENAEIIVEKDGSVIVYMGDDEMNEFIYKFVSKHKYKKGADTSKI
                     LDEGTLYVGQFNGNVGDFKGQGKWIALEYGKNGLDEKNGFKSQAQVLINTRLAASIVG
                     ATPMDRCEWIASHKQSGSKEVFATLTNNKNRQEPNAANPRTKNVYGQILKWMPKNSHK
                     DDDFTWEIFALAGNPDNQQGLYKGSNNITSENKFNSPDGLKFDRDGRLWIQTDGSYSN
                     KDEYEGMGNNCMLAANPKTGEIRRFLTGPIACELTGIAFSEDYTTMFVGIQHPGEGLK
                     GSTFPYGKTPRSSVIMIRKLDGGVIGS"
BASE COUNT         1184 a          573 c          570 g         1246 t
ORIGIN      
        1 ttatagaggt taaatttact caagatgatt atgaagtttc cgagcgtttg gatagaaaaa
       61 aacttgaaaa aattttaaaa actatagaat tttatcatct taaaaatgga atttcatcgg
      121 attttcagat tgatctgatt tgcattaaaa atgatgtgat acaattttgc gaaaatataa
      181 gtttttaagc tgatatttaa aaaaataaaa tacaattaga caaaaattaa agaaaggaaa
      241 aattatggga aaatatattg aattaacaag tgataatttt gctcaagcaa aagaaggtgt
      301 agctttagtt gatttttggg ctccatggtg cggaccttgt agaatgcttg ctccagttat
      361 tgatgaactt gcaaatgact tcgatggtaa agctaaaatt tgcaaagtaa atacagatga
      421 acaaggtgat ttagcagctg aatttggtgt tcgctctatt cctacgctta ttttctttaa
      481 aaatggtgaa gttgtagatc aactagttgg tgcacaatct aaacaagcaa ttagcgataa
      541 attaaactct ttactataaa ctaaaggcta gtataactag ccttcttctt aaaaatttca
      601 aatttatact aaataataat ttttattaac tactattaag aataattttt atatcattat
      661 taataataaa attcaatata aggaaatata aatgttagat gtagcaatca taggtggagg
      721 tcctgctgga cttagtgccg gactttatgc aactagaggt ggccttaaaa atgtagtaat
      781 gtttgaaaaa ggtatgcctg gtggacaaat tacctcaagt tctgagatag aaaattatcc
      841 aggtgtagcc caagttatgg atggaatttc ttttatggct ccttggagtg aacaatgtat
      901 gcgttttggt ttaaaacatg aaatggttgg agtagaacaa attttaaaaa atagtgatgg
      961 aagttttacc atcaaattag aaggtggtaa aacagaactt gctaaagctg tgatagtttg
     1021 tacaggctca gctccaaaaa aagcaggttt taagggcgaa gatgaatttt ttggaaaagg
     1081 tgtaagcact tgtgcaactt gtgatggatt tttttataaa aataaagaag ttgcagtttt
     1141 aggtggtgga gatacggctt tagaagaagc tttatatcta gcaaatattt gttctaagat
     1201 ttatcttatc caccgcagag atgagtttag agcagctcca tctacagtag aaaaagttaa
     1261 gaaaaacgaa aaaatagaac tcattactag cgcaagtgta gatgaagtat atggcgataa
     1321 aatgggtgtt gctggagtaa aagtaaaatt aaaagatggt agtattagag atttaaatgt
     1381 tccaggaatt tttacttttg ttggtcttaa cgtaagaaat gaaattttaa aacaagacga
     1441 tagtaagttt ttatgcaata tggaagaagg tgggcaagta agtgttgatc ttaaaatgca
     1501 aactagcgtt gctggacttt ttgccgcagg ggaccttaga aaagatgcgc ctaagcaagt
     1561 tatttgtgct gcaggtgatg gagctgtagc tgcattaagt gctatggctt atatagaaag
     1621 cttgcattaa gattttataa agttgctaaa agcaacttta tttttattta gcttcctatc
     1681 actccaccat caagttttct tatcattatt acactcgatc ttggtgtttt tccataagga
     1741 aaagtactac cttttaaacc ttctcctgga tgttgtatgc ctacaaacat tgtagtataa
     1801 tcctcactaa aagcaatccc tgttaattca caagcaatag gccctgttaa aaagcgtctg
     1861 atttcccctg tttttggatt tgctgctaac atgcagttat ttcccatacc ttcgtattca
     1921 tctttattag aataagatcc atctgtttgt atccaaagtc ttccatctct atcaaattta
     1981 agtccatcag gagaattgaa tttattttca cttgtaatat tatttgagcc tttatataag
     2041 ccttgttggt tatcaggatt tccagcaaga gcaaaaattt cccaagtaaa atcatcgtct
     2101 ttatgagaat tttttggcat ccattttaaa atttgtccat aaacattttt agtccttgga
     2161 tttgctgcat taggttcttg gcgatttttg ttgttcgtta gtgttgcaaa tacctcttta
     2221 gaaccacttt gtttatggct tgctatccat tcacatctat ccataggagt tgcacctaca
     2281 atacttgcag caagacgcgt attgatgagt acttgagctt gagacttaaa accatttttt
     2341 tcatctaggc cgtttttgcc atattctaaa gctatccatt ttccctgtcc tttaaaatct
     2401 cccacattgc cgttaaactg tcctacatac aaagtgcctt cgtctaaaat tttacttgta
     2461 tcagcacctt ttttgtattt atgtttgcta acaaatttat aaataaattc attcatctca
     2521 tcatcaccca tataaactat aacagaacca tctttttcta cgataatttc tgcattttca
     2581 tgtttaaaac gccctaaaga agttctttta acaggtgtgc tttttgcatc aaaaggattg
     2641 atttccacta tccaaccaaa acgattggct tcatcgatat ttttagctaa atcaaatctt
     2701 tcatcaaatt tttcccatcc ataaagacta gttttgttaa atccataacg cttaaaggca
     2761 tcattaaatt ctagattttc atctgaactt ccaaaaaaat cgtcaaaatt ttcttcacag
     2821 gtgatataag ttccccaagg tgtttgtcca tttgcacaat ttgcaaaagt tccatgaaca
     2881 aatttttcat tttttaaaac ttctttttta gctgctccac ttacttgcat tttagtgttt
     2941 gcatcgattc tgcggttata cttagagtct aaaaccacga tccaatcatc accctttttt
     3001 tcgatttcta agatacttac acccacacta gcttgctcgt ataaaacatc ttctttgctt
     3061 aaatttttac catgatgatt aaacatgatt tcaggattta tatattcatt attaacggct
     3121 aaaattcctc tgttttttga aagtggaaaa aaactcatac catcattgtc atctccaaaa
     3181 accaaatgag catttttaac tgcattcata tcgatgattt tattttcatc ataaggtttt
     3241 gctttactaa aaagtggatc accccaagaa attaaaacct ttgcttcata accttgcggt
     3301 actataactt tatcttgtgt gcttgcacta acagctttaa aacctaacaa atccttatcc
     3361 ttaagtataa cagcacttaa atttgaactt gcaaaaaaag ccaccataga acctaaagct
     3421 gaacctttta aaaacaatct tctttccatt tgtttttact ccatattaaa atttaaaaca
     3481 atggaagtat aaaaatattt ggaaactttt tagaaacttt gatgaaaaat ttaaattgaa
     3541 ggaaaaattt acacctagtt tttcactagg tat
//
LOCUS       DAPIWJ010000116         3558 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.118, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000116 DAPIWJ010000000
VERSION     DAPIWJ010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3558)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3558)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3558
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.118"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..1412
                     /locus_tag="RJ259_001599"
     CDS             <1..1412
                     /locus_tag="RJ259_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HDV7367277.1"
                     /translation="HAQEKITPIANKILKELNSIKNDFFKALNKPENLMIKDPNILKQ
                     TATAFEKLENTLKNILGNQASKIQDKENILENLLSNKENIKEEKLNHNTKNQDEEKHI
                     KASKEDENLDSGIKTHEEDTQDTKNDIQNNETENKPDNDIKNSTPNQEKIKDEKQEKS
                     KENIKENPKFYETKTENKTSINTNTNTSNPNTNNTQNLNNTQNIQSNNNQTMQNIFKN
                     QEFIKQNIVKNLAFNVENLDLEQVQDLSKNLSNLSRRLNESLKELEPYTQNAKLNQAE
                     LKNLEHKLNLSIKDLAQIKPKTEQDIAESLHHDVKSTLLQISNLAKNEGNEAVYNQAN
                     RLLAQIEINQLMSLANDSINTYLPFSWDDLNDSKIMFRRGKKDKFFAQIKLEFAKLGD
                     LEILISLNNEKYIDINIMAENIEFRKTIYENAHELKRNINKAGLLSANFFVGDIIRSK
                     FDTRNMKNLDLEMGMDKKV"
     gene            1409..1690
                     /locus_tag="RJ259_001600"
     CDS             1409..1690
                     /locus_tag="RJ259_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlhB-like flagellar biosynthesis protein"
                     /protein_id="HDV7367278.1"
                     /translation="MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKE
                     HGVPIKEDEDLIEILSKLDLGDEIPPNMYKAVAEVFAFIYQMANKTPKN"
     gene            complement(1687..2487)
                     /locus_tag="RJ259_001601"
     CDS             complement(1687..2487)
                     /locus_tag="RJ259_001601"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDV7367279.1"
                     /translation="MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNINMSEFKA
                     PCEYESLNALFTRTLQIPRKFEEGFISPSDGKILECGSTFLANEEHFAFSIKGHAYSV
                     EELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGVLYSVNEKHL
                     ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDASIQTNAKISHNFTRK
                     YENLNFKKGEELGNFELGSTIVLISQKGLLTFNLKVGQGIKFGEKIAD"
     gene            complement(2484..3395)
                     /locus_tag="RJ259_001602"
     CDS             complement(2484..3395)
                     /locus_tag="RJ259_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDV7367280.1"
                     /translation="MFYAPTYCLFFMTLAWDFVKLILALMGKRDKTYNLILRLIFELS
                     LIVLSVFLIYASINNALKTPEVKSVDVEIPNLKQDLKIAMLTDIHLGKNLHENFLDKL
                     ITKVNLQSPDMVVIVGDLIDTNPKDLKNYISKLNDFNSTYGTFYALGNHEYYHGINEV
                     LDLLRKHTNMKILVNQNLDLGFINIAGLGDLAGLDRGLYAPDLARIKVDLNTSKASIL
                     LTHQPKTALLYDLSDFDLVLSGHTHGGQIFPFMFLVKLQQGFVYGLYDLGEKTKLYVS
                     SGAGFWGPSLRVFAPSEIVILNLKGKK"
BASE COUNT         1471 a          572 c          412 g         1103 t
ORIGIN      
        1 gtcatgctca agaaaaaatc acccctatag ctaataaaat tttaaaagaa ttaaattcca
       61 tcaaaaatga ttttttcaaa gctcttaata agccagaaaa tttaatgata aaagatccaa
      121 acatccttaa gcaaactgct accgcctttg aaaaacttga aaatacttta aaaaatatac
      181 taggcaatca agcttctaaa atacaagata aagaaaatat tttagaaaat cttttaagta
      241 acaaagaaaa tatcaaggaa gaaaaactta atcataatac aaaaaaccaa gatgaagaaa
      301 aacatataaa agcatcaaaa gaagatgaaa atttagattc tggtataaaa acccatgaag
      361 aagataccca agatacaaaa aatgatattc aaaataatga aacagaaaat aagccagaca
      421 atgatataaa aaattctact ccaaaccaag aaaaaattaa agatgaaaaa caagaaaaat
      481 caaaagaaaa tatcaaagaa aatccaaaat tttatgaaac aaaaacagaa aacaaaactt
      541 caatcaatac aaataccaac acttcaaatc ctaacacaaa caatacgcaa aatttaaata
      601 atactcaaaa tattcaatct aacaataacc aaactatgca aaatattttt aaaaatcagg
      661 aatttataaa acaaaatatt gtaaaaaatt tagcatttaa tgtagaaaat ttagatctag
      721 aacaagtgca agatttaagt aaaaatttaa gcaatctttc tcgtagactt aatgaaagct
      781 taaaagaact tgaaccctat actcaaaatg ccaagcttaa tcaagcagaa cttaaaaatc
      841 tcgaacacaa actcaatctt tctatcaaag atctagcgca aattaaacca aaaacagaac
      901 aagatatagc tgaatcttta catcatgatg taaaatcaac acttttgcaa atttcaaatt
      961 tagctaaaaa tgaaggcaat gaagctgtat acaatcaagc taatcgtctt ttagcgcaaa
     1021 ttgaaatcaa tcagcttatg tctttagcta atgattctat caatacttat ctgccttttt
     1081 cttgggatga tttaaatgat tctaaaatta tgtttagacg cggaaaaaag gacaaatttt
     1141 ttgctcagat taaactcgaa tttgcaaaac ttggggattt agaaattctt atttctttaa
     1201 ataatgaaaa atatatagat attaatatta tggcagaaaa tattgaattt agaaaaacca
     1261 tctatgaaaa tgcccatgag cttaaaagaa atatcaataa agcaggactt ttaagtgcaa
     1321 atttctttgt aggtgatatc ataagaagta aatttgatac tagaaatatg aaaaatttag
     1381 atcttgaaat gggtatggat aaaaaagtat gagcaaaatc aaaagatcga ttaaaaaagc
     1441 tgtagctcta ggctatcaaa aagaaaaaaa ctctgcacca aaagtgcttg caagtggcaa
     1501 aggagaaagt gctgctaaaa ttatttcttt agccaaggaa cacggagttc ctattaaaga
     1561 agatgaagat ttaatagaaa ttttaagcaa gcttgactta ggtgatgaaa ttccacctaa
     1621 tatgtataaa gctgtagctg aagtttttgc ctttatctat caaatggcaa ataaaactcc
     1681 taaaaactaa tccgctattt tttctccaaa tttaataccc tgccctactt ttaaattaaa
     1741 agttaaaagt cctttttgag agattaaaac tatagtagaa cctagctcaa aatttcctag
     1801 ttcttcgcct tttttgaaat ttaaattttc atattttcta gtaaaattat gagaaatttt
     1861 agcattggtt tgtatgcttg catcaaaatt aaaacgcatt tttcctacat tttgcgctcc
     1921 tacaaaaaca agccaaaaaa tacctttttc attttgacat ttcaagctca ctctttcatt
     1981 ttttacatat aaattactaa tgcgttctaa atgtttttca tttacgctat aaagcactcc
     2041 acttgtgtaa gttgcactta aaatttgcat atcacaaggg ctgtgataac gatgataatc
     2101 ttttggagaa agataaatat tgacataatc aagcccattt ttaagttcat ctttttcaaa
     2161 gctatctttt aaaagctcct caacgctata agcatgtcct tttatagaaa aagcaaaatg
     2221 ttcttcattt gctaaaaaag tacttccaca ctctaaaatt ttaccatcac ttggactgat
     2281 aaaaccttct tcaaattttc ttggaatttg taaagttctt gtaaaaagag catttaaact
     2341 ctcatattca caaggagctt taaattcact catattgata ttaaaatact taacataatt
     2401 ttcattaata actttttgta tcattttagg aaatttaatc cccgctacaa aaccaaaaag
     2461 tctcgaactt tcttttgaaa aactcatttt tttcctttta aatttaaaat cactatttca
     2521 ctcggagcaa aaactctaag acttggcccc caaaatcctg ctccactact cacataaagc
     2581 ttagtttttt ctcctaaatc ataaagccca taaacaaaac cttgctgaag tttaactaaa
     2641 aacataaaag ggaaaatttg ccctccatgt gtatgcccac ttaaaacaag atcaaaatca
     2701 cttaaatcat aaagcaaagc tgttttaggt tgatgtgtga gtaaaatact agctttgctt
     2761 gtatttaaat ccacttttat tcttgctaaa tcaggagcat ataaacccct atcaagtccg
     2821 gctaaatctc caagtccagc aatatttata aaacccaaat ctaaattttg attgactaaa
     2881 attttcatat tagtatgttt tctaagtaaa tccaaaactt cattgatacc atgataatac
     2941 tcatgatttc ccaaagcata aaaagttccg taagtggagt taaaatcatt aagttttgag
     3001 atgtaatttt ttaaatcttt aggattagta tcaatcagat cccctactat tacaaccata
     3061 tcaggacttt gcaaattcac tttagtgatg agcttgtcta aaaaattttc atgcaaattt
     3121 ttacccaaat gtatatcagt aagcatggca atttttaaat cttgtttaag atttggtatt
     3181 tcaacatcaa cactctttac ttcaggtgtt tttagagcat tatttatact tgcataaatt
     3241 aaaaacacac ttaaaactat aagagaaagt tcaaaaatca aacgcaaaat aagattatat
     3301 gttttatctc ttttacccat aagagctaaa atcaatttaa caaaatccca agctaaagtc
     3361 ataaaaaaca aacaataagt cggcgcataa aacatggcta aaatttcata ccaagtatca
     3421 cttaaatatt catctctacg aaatattaaa aacacagctt gagctaaaaa aagcacaata
     3481 aaaataaaga aaaaaatttt ataaaaatac ttaaaaagag taattttctt gattaatctt
     3541 ttataaatat aaacattt
//
LOCUS       DAPIWJ010000117         3513 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.119, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000117 DAPIWJ010000000
VERSION     DAPIWJ010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3513)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3513)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3513
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.119"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            73..495
                     /gene="cgb"
                     /locus_tag="RJ259_001603"
     CDS             73..495
                     /gene="cgb"
                     /locus_tag="RJ259_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HDV7367281.1"
                     /translation="MTKEQIQIIKDCVPILQKNGEDLTNEFYKIMFNDYPEVKPMFNM
                     EKQISGEQPKALAMAILMAAKNIENLENMRSFVDKVAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEVAYGKIAKFYIDIEKKLYDK"
     gene            complement(515..2146)
                     /locus_tag="RJ259_001604"
     CDS             complement(515..2146)
                     /locus_tag="RJ259_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HDV7367282.1"
                     /translation="MPFIMELLKQNKLKLISFLLFSFITSAVGVLTLVFINDYLLKNA
                     QNIPIFYFIVLLLIFFISSTIVELGLSIFGQNFIFKMQRRVVKQILDTPLLRVAKVGK
                     ARILASLGSDVRNISFGLLRLPDFLQSSILILCTSVYLCYLSPQIFALCVVWIMVIFI
                     TNNFLMMKVYQYFRKARENDDALQNNYQNILDGHKELLINRDRAKLYYEDEFENNARL
                     KKKNSTLGNLFNNLSNNWTNVTLLALVGVEFYLALKFEWASVADATTIALSILFLRTP
                     LVSMIGSFPTLLLAKIALDKIAKLELDDYIEGFKKTHYISEWKKISFRNTQFAYEENF
                     HLNPVNIELKKGELVFLIGKNGSGKSTFCMLLTGLFKPSKGGIYVDDTLIDDKNLDEY
                     RSLISAVFSDFHLFTKTLNKENFASEEKIAFWLEFLELKNKTSVKDNELTLTKLSTGQ
                     KKRLAMLIALLEERDILVLDEWAADQDPVFRRFFYKKLLPLLKEQGKTIFAITHDDAY
                     FDSADRIFLAQNGEISELKGENIKELAKNLVEKFD"
     gene            complement(2196..3491)
                     /locus_tag="RJ259_001605"
     CDS             complement(2196..3491)
                     /locus_tag="RJ259_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDV7367283.1"
                     /translation="MRKSKFGTKEIKILGLSSLGGTLEFYDFIIFVFFAEYIANVFFP
                     KDMSEFWALLNTYGAFAAGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVLPTFVLA
                     FIPGYETLGFLAPVLLILIRIFQGIAIGGELPGAWVFVREYCQEKQKAFFLSCLNSAM
                     ALGILLGSIVFLIINAFFSIEEIAAYGWRIAFFVGGIFGIISIYLRRFLQETPVFKQM
                     KKESSLSSFPLKDLFKEKDIVKNLFSSMMMTWVLTGCVIVLVLLMPKFMPSILNLSGV
                     EGSYLQILGILGIALGGAFMGYLVDKFGLFKICIFFSLTFVFFSFLYFYALYELKNLV
                     LVCILYSIICFLGGINVFAPILMSEVFRAKIRFSGISFSYNISYAISGGITPQLVFWL
                     NTLASKNENPFLYGMSIYMIFLALLAICAVFIVKDKIKF"
BASE COUNT         1410 a          595 c          402 g         1106 t
ORIGIN      
        1 ttttaacaca agtcaatttt tttctccttt ttaagatata aaatatctct tttacaacaa
       61 aaaggagaaa ctatgacaaa agaacaaatt caaatcatca aagattgtgt gcctattttg
      121 caaaaaaatg gagaggattt aaccaatgag ttttataaaa taatgtttaa tgattatcct
      181 gaggtaaaac ctatgtttaa tatggaaaaa caaatttcag gagaacaacc aaaagcttta
      241 gcaatggcga ttttaatggc ggctaaaaat atagaaaatt tggaaaatat gagaagcttt
      301 gttgataaag ttgccataac tcatgttaat ttaggagtta aagaagagca ttatcctata
      361 gttggagctt gccttttaaa ggctattaaa aatcttttaa atcctgatga agccactctt
      421 aaagcttggg aagttgctta tggaaaaatt gctaaatttt atatcgatat agaaaaaaag
      481 ctctatgata aataatataa gcccattttg ggctttaatc aaatttttct actaaatttt
      541 tagctaattc ctttatattc tcacccttta attcgctgat ttcaccattt tgagccaaga
      601 aaattctatc agcactatca aaatatgcat catcatgtgt gatagcaaag attgttttac
      661 cttgctcttt tagcaaaggt aaaagttttt tataaaaaaa tcttctaaaa acaggatctt
      721 gatcagccgc ccattcatca agcactaaaa tatccctttc ttcaagcaag gctataagca
      781 tagctaaacg ctttttttgc cctgtagaaa gtttggttaa ggtcagttca ttatctttga
      841 cacttgtttt atttttaagt tctaaaaact ccaaccaaaa agcaattttt tcttcgcttg
      901 caaaattttc tttatttaag gttttagtaa aaagatgaaa atcgctaaaa acagcagaaa
      961 taagagatct atactcatct aaatttttat catctataag cgtatcatca acataaattc
     1021 cgcctttgct tggcttaaaa agtcctgtca aaagcataca aaaagtggat ttaccacttc
     1081 catttttacc tattaaaaat accaattcac cttttttaag ttctatattt acaggattta
     1141 aatgaaaatt ttcttcataa gcaaattgag tatttctaaa agaaattttt ttccattcac
     1201 tgatataatg tgttttttta aaaccttcta tataatcatc taattccaat tttgcgatct
     1261 tatccaaagc gatttttgcc aaaagcaaag taggaaaaga tcctatcata gatactaaag
     1321 gggttcgtaa aaacaaaata gaaagagcta tagttgtagc atctgcaaca cttgcccatt
     1381 caaattttaa agctaagtaa aactctacac ccactaaagc caaaagagtt acatttgtcc
     1441 agttgtttga gagattgtta aaaagattac ctaaagtact atttttcttt ttcaatcttg
     1501 cattattttc aaattcatct tcataataaa gcttggctct atcacgattg atcaaaagtt
     1561 ctttatgtcc atctagtata ttttggtaat tattttgcaa agcatcatca ttttcccttg
     1621 cctttctaaa atactgatat actttcatca tcaaaaaatt attagtaata aaaataacca
     1681 taatccatac cacacacaaa gcaaaaattt gtggtgaaag ataacataaa taaacactag
     1741 tgcataaaat caatatactt gattgtaaaa aatcaggcaa tcttaaaagc ccaaaagata
     1801 tatttctcac atcacttccc aaagaagcta aaattctagc cttacctact ttagcgactc
     1861 ttaacaaagg ggtgtctaag atctgcttta ctacgcgcct ttgcatttta aaaataaaat
     1921 tttgtccaaa aatactaagt ccaagttcaa ctatggtaga acttataaaa aaaatcaaaa
     1981 gcaaaacaat aaaataaaaa ataggaatgt tttgtgcatt tttaagcaaa taatcattga
     2041 taaaaacaag agttaaaact ccaacagcgc ttgtaataaa agaaaaaagc aaaaaagaaa
     2101 tcaactttaa tttattttgc ttaagtaatt ccataataaa aggcatttat aaactccaaa
     2161 atataatttt aattataaca ttttaagagt gattatcaaa attttatttt atcttttact
     2221 ataaaaacag cacaaatagc caataacgct aaaaaaatca tatatatact cataccatat
     2281 aaaaatggat tttcattttt actcgcaagt gtattaagcc aaaaaacgag ttgcggagta
     2341 ataccgcctg aaattgcata agaaatatta taagaaaaag aaattcctga aaatcttatt
     2401 ttagctctaa aaacttcact cattaaaata ggtgcgaaca cattaatccc acctaaaaaa
     2461 caaataatcg aatacaaaat acacaccaaa accaaatttt taagctcata taaagcataa
     2521 aaatataaaa aagaaaaaaa tacaaaagtt aaagaaaaga aaatgcaaat tttaaataaa
     2581 ccaaatttat ctacaagata acccataaaa gccccgccta aagctattcc caaaattcct
     2641 aatatctgta aataacttcc ttcaacccca cttaaattta aaatactagg cataaattta
     2701 ggcatcaata aaacaagcac aataacacaa cctgttaaaa cccaagtcat catcattgat
     2761 gaaaataaat tttttacaat atccttttct ttaaataaat ctttaagcgg aaaagaacta
     2821 agcgatgatt cttttttcat ttgtttaaaa acaggagttt cttgcaaaaa tctacgcaaa
     2881 taaatagaaa taatcccaaa aattccacct acaaaaaaag caatacgcca accataagca
     2941 gcaatttctt ctatgctaaa aaaagcatta atgattaaaa atactatact tcctaacaaa
     3001 attcctaaag ccatagctga atttaaacag cttaaaaaga aagctttttg tttttcttga
     3061 caatactctc ttacaaaaac ccaagctcca ggcaattctc cacctatagc tatgccttga
     3121 aaaattctta taagtatcaa taaaacagga gctaaaaacc caagagtttc ataacctgga
     3181 ataaaagcta agacaaaggt aggaagaacc attagtaaaa tacttagcat aaacatattt
     3241 ttacgcccaa atttatctcc aaaatgtgcc ataactatac cacccaaagg acgtgctaaa
     3301 tatccagctg caaatgctcc ataagtattt aataaagccc aaaattcact catatcttta
     3361 ggaaaaaata cattggctat atattcagca aaaaagacaa aaataataaa atcataaaat
     3421 tctaaagttc ctcctagtga agaaagtcct aagatcttaa tttcctttgt tccaaatttt
     3481 gattttctca ttgattaatt accttaaatt tta
//
LOCUS       DAPIWJ010000118         3352 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.120, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000118 DAPIWJ010000000
VERSION     DAPIWJ010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3352
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.120"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            172..870
                     /locus_tag="RJ259_001606"
     CDS             172..870
                     /locus_tag="RJ259_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDV7367284.1"
                     /translation="MKTFISNHKNQSSFITLFVFTPLFFVFLYSKDFLHIQPNEIIKE
                     NKFNMAIKHFVQNSSDMKPTQPTQTIQEPSNVQPKEPVQEIKKIKPRKEKPIAKPKKI
                     IPPANAKAISQPKKDTNMQQPIMQQQTPQASSYQSVSLTSNSELLKEIKSAIDEALIY
                     PRQARKMRMSGEVLVEFTWTKEKKLENLKILKPSKYDFLNKSALETIRIASKKFPQYE
                     KTFHIKIPLVYKLS"
     gene            complement(962..1399)
                     /locus_tag="RJ259_001607"
     CDS             complement(962..1399)
                     /locus_tag="RJ259_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDV7367285.1"
                     /translation="MKKDSYHKITSKLIQEFDLLAVEDLQIKNMCKRAKLKNIKAKSG
                     LNKSILNTSFYQFSQYLEYKAKHNGKFFIKVNPQYTSKTCSVCGNIKKNLMFKDRVYL
                     CEKCGNTLHRDINAANNILKRGLKSFGLGISLEDYKLKAFRIS"
     gene            complement(1520..1783)
                     /locus_tag="RJ259_001608"
     CDS             complement(1520..1783)
                     /locus_tag="RJ259_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDV7367286.1"
                     /translation="MNTFFKMRYHRDLPNTYKFNQITIIKNHNKYYLAFSIIYDESNV
                     SLMSSKDFDIKKAVDIDLNINEITLSSGELIATNSKLLSRAEY"
     gene            complement(2212..2304)
                     /locus_tag="RJ259_001609"
     CDS             complement(2212..2304)
                     /locus_tag="RJ259_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367287.1"
                     /translation="MLETLKKYAENQGIEDNYPKKIYNQKEKKP"
BASE COUNT         1288 a          558 c          365 g         1141 t
ORIGIN      
        1 aagtaaatag caaaaattaa atatctttta gatataagct tgattatttg attgttattt
       61 ttctctgtga aatttgtttc aaaatttatc tttttaaaca atttaccata gaatgtgttt
      121 taagaaataa agatatttaa atcaaaaaat aaaatcataa cggagtaaaa gatgaaaaca
      181 tttataagca atcataaaaa ccaatcttct tttatcactt tatttgtttt tacaccttta
      241 ttttttgttt ttctttattc taaagatttt ttacacatac aacccaatga aattattaaa
      301 gaaaataaat ttaatatggc aatcaaacat tttgtacaaa attcctccga tatgaaaccg
      361 acacaaccca cacaaactat acaagagcct tcgaatgtgc aacccaaaga acctgtgcaa
      421 gaaataaaaa aaataaaacc gagaaaagaa aaacctatcg ctaaacctaa aaaaataatc
      481 cctccagcaa atgcaaaggc aataagtcaa cccaaaaaag atacaaacat gcagcaacca
      541 atcatgcagc aacaaactcc acaagccagc tcttaccaaa gcgtatcttt aactagtaat
      601 agtgagcttt taaaagaaat aaaatcagca atcgatgaag ccctaatcta ccctagacaa
      661 gctagaaaaa tgcgtatgag tggggaggtt cttgtagaat ttacctggac aaaagaaaag
      721 aaattagaaa atttaaaaat acttaagcct tcaaaatatg attttctaaa taaaagtgct
      781 ttagaaacta tacgcatagc ttctaaaaaa tttccacaat atgaaaaaac ttttcatata
      841 aaaataccat tggtatataa attaagctaa atctttcaca atatactcta tttttaatgc
      901 aaatcactcc agctttgcta acgcttagaa gtagaagctt cctagctaaa gctaactagt
      961 attagctaat tcgaaaggct ttgagtttat agtcctcaag gctaattcct aacccaaacg
     1021 actttaatcc acgctttaag atattatttg cagcattaat atctctatgt aaagtgttgc
     1081 cacatttttc acaaagatac actctatctt taaacataag attttttttg atatttccac
     1141 atacactaca agttttgctt gtatattgtg gattgacttt tataaagaat ttgccattat
     1201 gctttgcttt atactctaga tattgagaga attgatagaa tgaagtatta agaatagatt
     1261 tatttaaacc acttttagct tttatattct ttaatttagc tcttttacac atattcttaa
     1321 tttgcaaatc ttcaactgct agcaagtcaa attcttgtat gagttttgaa gttatcttgt
     1381 gataactatc ctttttgatt ttgaactttt ttcatagatt ttatttaatt ttaattgtgt
     1441 ttttttgaaa ttatggctta actttgtttt ctcctttttt gtttttaata ttctcctgct
     1501 ttgttttctt tgcaatcttt taatattcag ctctactaag tagctttgag ttagtagcta
     1561 ttaactctcc actgcttaag gtaatctcat tgatatttaa atcaatgtca actgcttttt
     1621 taatatcaaa atctttgcta gacattaaag aaacattcga ttcatcataa atgatactaa
     1681 aagctaaata gtatttattg tgatttttga taatagtgat ttgattaaac ttataagtat
     1741 ttggtaaatc tctgtgataa cgcattttaa aaaatgtatt cataagtcta aatatcttaa
     1801 acttagtagt atcactatct ttgattttgt aggcttgatt attccaatta aagctttgct
     1861 ttgcaaattt agagttttta aatttgagaa agcctttgtt tttatctcta attgcttgct
     1921 ctaaggcacg agaagattaa tccttgcttg ttgggttaca acacttttat agcttaattc
     1981 tcttgctttt ataaggctag ttttattgat tatctatctt acttgccttt aaataactcc
     2041 tatctttttt atctaaattc ttatttttat cccactctct tgctgtaaat ttaaacaaat
     2101 attataggct tgatatagat gaaacattga tgattaataa gcttttgttg ttctttgttt
     2161 aggtagaatt ctatatttaa aacctttggt tatttgcatt gctttgttcc attagggctt
     2221 tttttctttt tggttatata tttttttagg gtaattatct tctatgcctt gattttctgc
     2281 atatttttta agagtttcta gcattattcc gcataggtat tctataaaaa attactgatt
     2341 atgtcaaata cctaactaga gccgtacaac taacactgta agcaattcat ctcccactta
     2401 agaagtgaga gttttattga ataaaaaaag ataaatttaa agcaagtaat ctttttttag
     2461 acaacactaa acccttgcat gtatttacag caatatttat ttcatcataa acaaccccca
     2521 acccataaaa cctcaataaa cactataaaa taaaagtatt tgtaaagaac aagcaaacaa
     2581 taaatctcaa tcacccagac aaaaacaatc tcaaccgacc cataaagcaa taaatcaagc
     2641 aagcataatt aatttaattg attaaactaa taaatttaat ttataagatt aacaataaaa
     2701 aaccataaat taaccaagct aatcccaccc aaacccaaac aagccataaa ttacacacac
     2761 ttttttacaa acatcaatta aatagcaaga ctatcgataa taaaaaattt atctcaagta
     2821 taacattcat tctcgccaac aagaatagac aatcatagtc tatccaccct aacccaacat
     2881 taacccctaa cccaactaag aagtgtataa caaccccaac ccataaacct caataaacac
     2941 tataaaataa acttgagtga ttaaaaatcc aacccaatta ttgaacaaac ccaacctaca
     3001 taataaaata taaactagac atataaagaa caattgacac ataaaaatag attgaataaa
     3061 taaacctata caagtaaaca taaagattaa ttattgatac aaaagattca ataaataaat
     3121 aaaaagaata attgagatat aaaaacatat aaactaaaca actcaaacaa ccattaaatc
     3181 aacccaagct aattaaacct ataaacataa aaaaataatt aaatataaaa acaacgattg
     3241 acgtataaaa actaagattt taaatctata agaataagat aaagcagaat taacaagtcc
     3301 gcaatgagct actttccccc tgccagtaag gcgtagtatc atcacccacg at
//
LOCUS       DAPIWJ010000119         3295 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.121, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000119 DAPIWJ010000000
VERSION     DAPIWJ010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3295)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3295)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3295
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.121"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            114..2672
                     /gene="flgE"
                     /locus_tag="RJ259_001610"
     CDS             114..2672
                     /gene="flgE"
                     /locus_tag="RJ259_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HDV7367288.1"
                     /translation="MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTM
                     FSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFF
                     MVSDDGGLTRYLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFID
                     PGMHIPAAKSTEVAIKANLNSGLNIGTASRPIYGLDSIHGFNKKTGETKDENDTGTTQ
                     FYTTSKNSVEVTEKGVDAGALFNANGTGLNLREGQGIWVSYADAKFSTAGAGAQANQG
                     NNGVFDPNQKVNQNPVIFWGHEQKPTTLDITLNGVHIQNTSIKSLDEAIAYINTFTAP
                     TDTRDGTGVRAVKKADGSGIDFINDNADGTTDNMKNIDLQVNANNSAGELINIRVTGN
                     PADFDWNNINLRPAGNPIIRGNGSAWITGTAAQNQDRIQIVTAHKYIYSSTPQTLPPL
                     YNPDGGHTWNQANMNTPGTPENNYRLAMSGSFLTTAPRVFRTTEDLRELLQRDARYGV
                     DYDGSGRFEVTGEDVNEGVSVVITENGNFSIANPNVASNPPAGINNPNRTTHNINFNV
                     TAYSNKQGTVSTNDAFTKIFKAFDGVLTVGGQIKESEQLKLSAFSAGLEIYDSLGSKH
                     TLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPNNIVVGTARFNNDGSLASYN
                     PKTLNFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAI
                     RVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGAIVVGEAGT
                     GGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ"
     gene            2917..>3295
                     /gene="queF"
                     /locus_tag="RJ259_001611"
     CDS             2917..>3295
                     /gene="queF"
                     /locus_tag="RJ259_001611"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HDV7367289.1"
                     /translation="MRYGEKEIKEFDVENMEIWPNDAKNDYIIKITLPEFMCCCPRSG
                     YPDFATIYLEYMPNKFVVELKAIKLYINTFMYRNVSHEASINEIYNTLKDKLKPKWIK
                     VVGDFNPRGNVHTVIECRSDMVVP"
BASE COUNT         1137 a          501 c          650 g         1007 t
ORIGIN      
        1 aaaaaatttc aaaagttgga acagaacttg cttgtaaact tcacataaac gcaaaagttt
       61 tttaaagcca aagcgttaaa ttttttaaag caatatttta taaaggattt aagatgatga
      121 gatcactttg gtctggcgta agcggactac aagcacatca agttgcgatg gatgttgaag
      181 gtaataacat ttcaaatgtt aataccactg gttttaaata ctcccgtgca gattttggga
      241 ctatgtttag ccaaactgtg aaaatcgcta cagctccaac tgatggaaga ggtggatcta
      301 atccacttca aatcggtctt ggcgtttcag taagttctac aactagaatt cattctcaag
      361 gttcagttca aaccacagat aaaaacactg atgtggctat aaatggcgat ggttttttta
      421 tggtgagtga tgatgggggg cttactcgct atcttacaag gagcggggat tttaaactcg
      481 atgcttatgg aaattttgtt aataatgccg gctttgtagt tcaagggtgg aatatcaact
      541 gggatactca aagtatagat agctcaagaa ctccgcaaaa tatttttatc gatccaggta
      601 tgcatatccc tgcagcaaaa tcaaccgaag tagccatcaa agcgaattta aatagtggtt
      661 taaatatagg aacagcaagt cgtcctatat atggacttga ttctatacat ggttttaata
      721 aaaaaacagg tgaaactaaa gatgaaaatg atacaggaac cactcagttt tatacgactt
      781 ctaagaattc tgtagaagta actgaaaaag gcgttgatgc tggagcttta tttaatgcta
      841 atggtacagg tttaaattta agagaaggtc aaggaatttg ggtatcttat gcagatgcta
      901 agtttagtac agctggagct ggagctcaag caaatcaagg taataatggt gtttttgatc
      961 ctaatcaaaa agtaaatcaa aatcctgtta tattttgggg acatgagcaa aaacctacaa
     1021 ctttggatat tactctaaat ggagttcata tacagaatac ttctataaaa agcttagatg
     1081 aagctatagc ttatatcaat acctttactg caccaacgga tacaagagat ggaacagggg
     1141 taagagcagt aaaaaaagca gatggtagtg ggattgattt tatcaatgac aatgctgatg
     1201 gcactacaga taacatgaaa aatatagatt tacaggttaa tgctaataat tcagctggag
     1261 aacttattaa tataagggtt actggtaatc ccgcagattt tgattggaat aatatcaatt
     1321 taagacccgc tggtaatcct ataatacgtg gtaatggtag tgcttggata acaggaactg
     1381 ctgctcaaaa tcaagataga atacaaatag taacagctca taaatatatt tatagctcta
     1441 ctcctcaaac tttaccacct ttgtataatc ctgatggtgg acacacttgg aatcaggcaa
     1501 atatgaatac tcctggtact cctgaaaata attatcgatt agctatgagt ggttcatttt
     1561 taactacagc accaagggtt tttagaacca cagaggactt aagagagctt ttacaaagag
     1621 atgctagata tggggtggat tatgatggaa gcggtagatt tgaagttaca ggtgaagatg
     1681 taaatgaagg tgtaagtgtt gttattacag aaaatggaaa tttttctata gcaaatccta
     1741 atgttgcaag taatccacca gctggtatta ataatccaaa tagaacaaca cataatataa
     1801 attttaatgt aacagcctat agtaataaac aaggaactgt aagtaccaat gatgccttta
     1861 ctaaaatttt taaagctttt gatggagttt taacagtcgg aggtcagatc aaagaaagtg
     1921 agcaacttaa gctttctgct ttttcagctg gacttgaaat ttatgattct ttaggttcaa
     1981 aacatacttt agaagtgcag tttgtcaagc aaagtaccac tcaagatggg ggtaatgaat
     2041 ggcaaatgat catccgtgta cccgaacctg ctgagattaa cactacaggt gaaggaccaa
     2101 acaatattgt tgtaggaaca gcaagattta acaatgatgg ctctttggct agttataatc
     2161 ctaaaacttt aaatttttca ccaaataacg gtgctgcacc aaatcaacaa atcaaacttt
     2221 cctttggaac aagtggaagc aatgacggcc ttgtaagctc aaattctgct tcaactctaa
     2281 caggacaggc aactgatggt tatacttcag gtaacttaaa acctgatgct atccgtgtgg
     2341 atgacaaagg taatatctta ggtgaattta ctaatggcaa aacctttgct gtagcaaaaa
     2401 tagcaatggc ttcagtggca aataactcag gtcttgagga aattggtgga aatcttttta
     2461 aagttactgc aaatagtggg gctatagtag taggtgaagc aggaacagga ggtcgtggtg
     2521 agatgaaaac ctcagctctt gaaatgtcaa atgtggattt aagtcgttct ttaacagagc
     2581 ttattatcat tcaaagaggt tatcaagcaa attcaaaaac catttcaacg agtgatcaaa
     2641 tgcttcaaac tctaatccag cttaaacaat aatttaagct tagtattcta taaaatattg
     2701 ttttttgctc cctttaaggg agcaagcctt gctttacaag cctatcttgg tagtcttgta
     2761 atactaggct taggcttgaa ctgccttcaa tttattgcta actcactctt gctaggggtg
     2821 agttgcaata aaattgcatt ttcttatctg tatcataatc gttttaaaaa cttattttgt
     2881 tataattttt gctcgaattt aaatttaagg aaatttatgc gttatggtga aaaagaaatc
     2941 aaagaatttg atgtagaaaa tatggaaatt tggccaaatg atgctaaaaa tgactatatc
     3001 attaaaatca ctttacctga atttatgtgt tgttgtccgc gttcgggcta tcctgacttt
     3061 gcaacgattt atcttgagta tatgcctaat aaatttgtgg ttgagcttaa ggctataaaa
     3121 ctttatatca atacttttat gtatagaaat gtttcacatg aagcaagtat caatgaaatt
     3181 tataatactt taaaagataa attaaaacca aaatggatta aagttgttgg ggattttaac
     3241 ccgcgtggaa atgtacatac ggtgatagaa tgtcgtagcg atatggtagt gccaa
//
LOCUS       DAPIWJ010000120         3158 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.122, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000120 DAPIWJ010000000
VERSION     DAPIWJ010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3158)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3158)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3158
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.122"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            7..953
                     /gene="arsP"
                     /locus_tag="RJ259_001612"
                     /pseudo
     CDS             7..953
                     /gene="arsP"
                     /locus_tag="RJ259_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_129557825.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="organoarsenical efflux permease ArsP"
     gene            963..1286
                     /locus_tag="RJ259_001613"
     CDS             963..1286
                     /locus_tag="RJ259_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HDV7367290.1"
                     /translation="MQKFLTIISAINDESRILILYHLLRYKELCVCDLQELLNMGQSR
                     LSRHLKILKDAGFLYVRRQGTWAYYGINNELLKLHLDLFENIKNLELKNVIKKNENII
                     TQICP"
     gene            complement(1294..1725)
                     /locus_tag="RJ259_001614"
     CDS             complement(1294..1725)
                     /locus_tag="RJ259_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HDV7367291.1"
                     /translation="MAYTIKKVEKETKISAHTLRFWAKKGLFPFVQKDENSVKYFSKS
                     DIEWVKWIEWLRISGMPIEQIKHYIKLCSLGIKTAKERQEMLKQTKKKLQNQIKTLKE
                     SEKVLSKKIKIYEEMLANEVDGFNPESKDYQPCDKLHKFKG"
     gene            1805..>3158
                     /locus_tag="RJ259_001615"
     CDS             1805..>3158
                     /locus_tag="RJ259_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HDV7367292.1"
                     /translation="MLKITKIKRKIMNSIKIKLSLIANLIAIFALIVLGIVSFYFTKT
                     SLYESTLKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDIANLPYQSLITEENIINNVG
                     PILKYYHHSINALNVYLGLNNGKVLLSQKSNDAKMPELRDDLDIKTKDWYQEALKTND
                     IFVTPAYLDTVLKQYVITYSKAIYKDGKIIGVLGVDIPSEDLQNLVAKTPGNTFLFDQ
                     KNKIFAATNKELLNPSIDHSPVLNAYKLNGDNNFFSYKLNNEERLGACTKVFAYTACI
                     TESADIINKPIYKAAFIQAIVVIIVVVFSVILLYFIVSKYLSPLAAIQTGLTSFFDFI
                     NYKTKNVSTIEVKSNDEFGQISNAINENILATKRGLEQDNQAVKESVQTVSVVEGGNL
                     TARITANPRNPQLIELKNVLNKLLDVLQARVGSDMNAIHKIFEEYKSLDFRNKLENAS
                     G"
BASE COUNT         1102 a          447 c          404 g         1205 t
ORIGIN      
        1 taaaaaatgc agtctttttt aaatactttc aaagagtttt tatatctatt tactgagctt
       61 tctgtacttt ttatagctat ttctttttta gtttctatta tcaatcaaaa atacgaagga
      121 atttttaaaa acaacttgct ggtgacaaaa tttcaagtta ttttaaagct atatttttag
      181 gtgctttaac gccattttgt tcctgttcta ccataccgct tttaagagct tttttagaag
      241 cgaaagtaaa acttagcata gctttagctt atctttttac ttcgcctctt attaatccta
      301 ttattttttc catgcttttt gtaacttttg gtttaaagtt aagtttgatt tatgtggttt
      361 ttttgatatt tttgatattt attatttctt ttgttttttc taaatttaag gaagatagtt
      421 ttttaaaaca tattcctaaa aatacaaaat caagtatttt tacccaaagc gctcacaatc
      481 ctagcaattt tatttttaaa caaaaatcat gctgtgcaaa tactcaagat aagtctaaaa
      541 atataacgat aaactataaa gaattattca aagaaagttt gaaaaattat aaaaaattat
      601 taccttatat cgttgtggca gtttttatcg gtgcttttat tcatggtttt attcctcaag
      661 aaattttaca aaaataccta aatggcaatg aaattttaag cattgcatta gcggcttttt
      721 taggaatttt cctttattta agagtagaaa ctattattcc tataggctta gcacttttac
      781 aaatgggaat ttctcaagga gtgattatga gttttttaat cgctggtgct ggatgttctt
      841 tacctgagct tgttttactc aaacaaatgt ttaaaataaa atttttattt ttatttgtta
      901 tgattatttt aggcgtggct atatcttttg gaatttttat taatttaatt taaggaaata
      961 aaatgcaaaa atttttaacc attatttcag caatcaatga tgaaagtagg attttgattt
     1021 tgtatcatct tttaagatac aaagaacttt gtgtttgtga tctacaagag ctcttaaaca
     1081 tgggtcaatc aagactttca agacatttaa aaattttaaa agatgcaggt tttttgtatg
     1141 taaggcgtca aggaacttgg gcgtattatg ggattaataa tgagctttta aagctgcatt
     1201 tagatctttt tgaaaatatc aaaaatttag agcttaaaaa tgttattaaa aaaaatgaaa
     1261 atattattac ccaaatttgc ccttaatata aaatcaaccc ttaaacttat gcaatttatc
     1321 acaaggttga tagtccttgc tttctggatt aaacccatcg acttcatttg caagcatttc
     1381 ttcataaatt tttatctttt tgcttaaaac tttttcactt tcttttaatg ttttaatctg
     1441 gttttgtaat tttttctttg tttgctttaa catctcttgt ctttctttag cagtttttat
     1501 acccaaagag caaagtttta tataatgttt gatttgttct attggcatac ctgaaattct
     1561 aagccattct atccatttta cccattctat atcgcttttt gaaaaatatt tcacactatt
     1621 ttcatctttt tgaacaaaag gaaacaaacc ttttttagcc caaaatctta aagtatgagc
     1681 actaattttt gtttcttttt ctactttttt tatagtataa gccatatttt ctcctttatt
     1741 taagataaaa ataaaaattt attttatttt tttgtgataa aataatagcc aaattattag
     1801 ttttatgcta aaaataacaa agattaaaag gaaaataatg aatagtatta aaatcaaact
     1861 ttccctcatt gcaaatttaa ttgcaatttt tgccttaatt gttctaggta ttgtaagttt
     1921 ttattttaca aaaacctcac tatatgaaag cactcttaaa aatcaaactg acctacttaa
     1981 agtcacacaa tctaccgttg aagatttccg ttccacaaat caatctttta ctagagcttt
     2041 agaaaaagat atcgcgaact taccttatca atctttaatc actgaagaaa atattattaa
     2101 caatgttggt ccaatattga aatattatca tcatagtata aatgcactaa atgtttattt
     2161 aggtttaaac aatggaaaag ttttacttag tcaaaaatct aatgatgcaa aaatgcctga
     2221 attacgtgat gatttagata taaagacaaa agattggtat caagaagctt taaaaacaaa
     2281 tgatattttt gttacaccag catatttaga tacagtttta aaacaatatg taataacgta
     2341 ttctaaagct atttataaag atggtaaaat cataggggta ctgggtgtcg atataccatc
     2401 agaagatttg caaaatttag ttgcaaaaac ccctggaaat acttttttat ttgatcaaaa
     2461 aaataaaata tttgcagcaa ccaataaaga attattaaat ccatccattg atcattctcc
     2521 tgttctaaat gcatataaac tcaatggtga taacaacttc ttctcttata agttaaataa
     2581 tgaagaaaga cttggagctt gtactaaagt ctttgcttat acagcttgta ttaccgaaag
     2641 cgctgatatt ataaataaac ctatttataa agctgcattt attcaagcca ttgttgtcat
     2701 tattgtagta gtatttagcg tcatcctcct ttatttcatc gtatcaaaat acctctcccc
     2761 acttgcagct atccaaacag gtttaacttc attctttgat tttatcaact ataaaacaaa
     2821 aaatgtttct actatagaag taaaaagcaa tgatgaattt ggacaaatct caaatgctat
     2881 caatgaaaac attcttgcta ctaaaagagg cttagaacaa gacaatcaag ccgttaaaga
     2941 atcagttcaa accgtatcag ttgtagaagg tggtaattta acagcaagaa ttactgctaa
     3001 tccaagaaac ccacagctta ttgaacttaa aaatgttcta aataaacttc ttgatgtttt
     3061 acaagctaga gtaggttctg atatgaatgc tattcataaa atttttgaag aatacaaaag
     3121 cttagacttt agaaataaat tagaaaatgc tagcggta
//
LOCUS       DAPIWJ010000121         3091 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.123, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000121 DAPIWJ010000000
VERSION     DAPIWJ010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3091)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3091)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3091
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.123"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..1657
                     /locus_tag="RJ259_001616"
     CDS             <1..1657
                     /locus_tag="RJ259_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7367293.1"
                     /translation="KELKCAKNEALILRELCRNYVVSISSINAFTLLSTIFGNDKYLY
                     LDALEDLKKLIERGFVNQNSSFFKSLENNKTQTLTLALLQSELSLSEYFLEFLEAKPR
                     LNFEKQEAYADYLEYLKDEFARIQLYERLSFIQKSAYNSEIKNQIKLYERHIKERLKK
                     SKFYNVLADIFKEYNLEHKEQIIFLALLKEEYALSNESSISREMNSLLSLISENDLER
                     HKNKKLLQENAPLLNLIECDEYLNAFGDISKSFFIIDEILQRIINFEPKQSKKIKIES
                     VLKDQDIFELIEPSTDINDIIMPENTKELLENILKQQDKKVLERLHSWGIKSNKNIEA
                     KIIFYGPAGTGKTMSALAMAKSMKKSVLSFDCSKILSKWVGESEQNVRKIFDTYKNIV
                     QTCKQSPILLLNEADQFLSTRVDGSSGSDKMHNQMQNIFLEQIERFSGVIIATTNFLE
                     SLDSAFSRRFDYKIEFKKPDFKDRLKIWEKFLPKKALFEKDFDINILSNYELSGAQIL
                     MVVKNTALKVAVSKDGVFKMQDFIESIQKELNSSFDKSKIVGF"
     gene            complement(1622..2194)
                     /locus_tag="RJ259_001617"
     CDS             complement(1622..2194)
                     /locus_tag="RJ259_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HDV7367294.1"
                     /translation="MQTKYFKFLAYFSFIISLIYGFYHIIKAFDFVKEAYIYTGIFAL
                     IFLNLSLLFSLLKFKKTRNYPKILGIFAAFWAILHFLNYFIFDRNAQILRLFDDISHR
                     LLEASGFIAFLIIFLMLLSSFKIFKKLSKIRKLGYLCLVLASYHYFLTPKIPMFWEWS
                     ALIIALFYFIVRYTKTLKKLKSNNLTFIKT"
     gene            complement(2194..3087)
                     /gene="msrP"
                     /locus_tag="RJ259_001618"
     CDS             complement(2194..3087)
                     /gene="msrP"
                     /locus_tag="RJ259_001618"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HDV7367295.1"
                     /translation="MLITPEKLYKQRRNFLKLGAGALISSSVLASKLSALNFTSDTNP
                     NKLEISDEELATNYVNFYEFSTDKRKAVSLAQNFNTQNWKIDISGEIEKPLTLSMEDI
                     LKFPLEERIYRFRCVETWSMVVPWVGFELRRLIEMAKPTSEAKFVKFTTLLDKSQFPD
                     QDALFPTIDYPYVEGLRMDEAMHPLTLLAVGMYKKALKPQNGAPIRLVVPWKYGFKSI
                     KSIVKIKFTKEQPKSTWESYAPSEYGFYANVNPNVSHPRWSQANERALGDFFTKPTLM
                     FNGYEKEVASLYKNMDLKVNF"
BASE COUNT         1181 a          385 c          471 g         1054 t
ORIGIN      
        1 taaagagctt aagtgtgcta aaaatgaggc tttgattctt agggagcttt gtagaaatta
       61 tgtcgtttct atttcttcta tcaatgcctt tactttatta tcgacaattt ttggaaatga
      121 taagtatctt tatcttgatg ctttggagga tttaaaaaaa cttattgaaa gaggttttgt
      181 aaatcaaaat tcgagttttt ttaaaagttt agaaaataat aaaactcaaa cattaactct
      241 tgccttattg caaagtgagc ttagtctaag tgaatatttt ttagaatttt tagaagcaaa
      301 acctcgttta aactttgaga aacaagaggc ttatgcagat tatttagaat atttaaaaga
      361 tgaatttgcg cgtattcaat tatatgaaag attaagtttt atacaaaaaa gtgcttataa
      421 tagtgaaata aaaaaccaaa ttaaacttta tgaaagacat atcaaagaaa gactaaaaaa
      481 aagtaaattt tataatgtat tggctgatat ttttaaagaa tataatcttg aacataaaga
      541 acaaattatt tttctagcac ttttaaaaga agaatatgcc ttaagtaatg aaagttcgat
      601 ttctagagaa atgaattctt tactttcttt aatcagtgaa aatgatttag aaagacataa
      661 aaacaaaaaa ttattacaag aaaatgctcc tcttttaaac ttaatcgagt gtgatgaata
      721 tttaaatgct tttggagata tttctaaaag tttttttatt attgatgaaa ttttacaaag
      781 aattataaat tttgaaccaa aacaaagtaa aaaaatcaaa attgaaagtg ttttaaaaga
      841 tcaagatatt ttcgagctta tagaaccaag cactgacatc aatgatatta ttatgcctga
      901 aaatacaaaa gagcttttag aaaatatttt aaaacaacaa gataaaaaag tcctagaaag
      961 acttcattct tggggtataa agagtaataa aaatatagaa gctaaaatta ttttttatgg
     1021 tcctgctggt actggaaaaa ctatgtcagc tttagctatg gctaaatcaa tgaaaaaatc
     1081 tgttcttagt tttgactgtt ctaaaatttt gagcaaatgg gttggagaga gtgagcaaaa
     1141 tgtaagaaaa atttttgata cttataaaaa tatcgtgcaa acttgcaaac aaagtcctat
     1201 tttacttctc aatgaagccg atcagttttt aagtacgcgt gtagatggaa gtagtggtag
     1261 tgataaaatg cataatcaaa tgcaaaatat atttttagag caaatcgagc gttttagtgg
     1321 tgtgattatc gctacgacaa attttttaga aagcttagat agtgcatttt caagaagatt
     1381 tgattataag atagaattta aaaaacctga ttttaaagat aggcttaaaa tttgggaaaa
     1441 atttctacct aaaaaagcat tatttgaaaa agattttgat ataaatattt tatcaaatta
     1501 tgaattaagt ggagcacaaa ttttaatggt ggtgaagaat acagctttga aagtagctgt
     1561 atcaaaagat ggggttttta aaatgcaaga ttttatagaa agcatacaaa aagaattaaa
     1621 ttcaagtttt gataaaagta agattgttgg attttaactt ttttaatgtt tttgtatagc
     1681 gaactataaa ataaaacaaa gctataatta aagcactcca ttcccaaaac ataggaattt
     1741 ttggggttaa aaaataatga taacttgcca aaactaagca taaatatcct agttttctga
     1801 ttttactaag ttttttaaag attttaaaag aacttaaaag cattaaaaat atgattaaaa
     1861 atgcgataaa tccacttgct tctaataaac gatgtgaaat atcatcgaaa agccttaaaa
     1921 tttgagcatt tctatcaaaa ataaaataat ttaaaaagtg caaaatcgcc caaaaagctg
     1981 caaaaatacc taaaatttta ggataatttc ttgttttttt aaatttaagt aaagaaaata
     2041 aaagacttaa atttaaaaag attaaagcaa atattccagt gtaaatatag gcttctttta
     2101 caaaatcaaa ggcttttatg atatgataaa agccataaat taaacttatg ataaagctaa
     2161 aataagcaag aaatttaaag tattttgtct gcattaaaaa ttcactttca agtccatgtt
     2221 tttatataaa cttgccactt ctttttcata tccattaaac attaaagtag gtttggtaaa
     2281 gaagtctcct aaagcccttt cgttagcttg agaccatcta ggatgagaaa cattaggatt
     2341 gacattagca taaaaaccat attcacttgg agcgtaactt tcccaagtag atttaggctg
     2401 ttctttggta aattttattt taactatgga tttaatactt ttaaagccat atttccaagg
     2461 aacaacaagg cgtattggag cgccattttg aggctttaag gcttttttat acattcctac
     2521 tgcaagcaag gtaagaggat gcatagcttc atccatgcga agtccttcta cataaggata
     2581 gtctatagtt ggaaataaag cgtcttgatc gggaaattga ctcttatcta aaagagtggt
     2641 gaatttaaca aattttgcct cgcttgtagg ttttgccatt tcaatcaaac gacgcaattc
     2701 aaagcctacc caaggtacca ccatagacca agtttcaaca cagcgaaaac gataaattct
     2761 ctcttctagt ggaaatttta aaatatcttc catgcttaaa gttaaaggtt tttctatttc
     2821 tccactgata tcgattttcc aattttgagt attgaaattt tgtgccaatg atacagcctt
     2881 tcttttatct gttgaaaatt cataaaaatt gacataattt gtagctagtt cttcatcgct
     2941 gatttcaagt ttgtttggat tagtatcgct tgtgaaattt aaagcagata gtttagaagc
     3001 aagcacgctt gaacttatta aagcacccgc tccaagtttt aaaaaatttc tcctttgttt
     3061 ataaagtttt tcaggtgtta taagcataat t
//
LOCUS       DAPIWJ010000122         2880 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.124, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000122 DAPIWJ010000000
VERSION     DAPIWJ010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2880)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2880)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2880
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.124"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            25..2814
                     /locus_tag="RJ259_001619"
                     /pseudo
     CDS             25..2814
                     /locus_tag="RJ259_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343503.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
BASE COUNT         1145 a          425 c          424 g          886 t
ORIGIN      
        1 aaatattttt tataaaggtt aaaaatgcat ttcactttgc taaatgaaaa agattttttc
       61 aacccatact accgcaaaaa gcaaatcatg caaaatgaat ttgatatatt taacaaggct
      121 ttaatgcaat atctagaaag acttgaaagt tcgcaaagtg aaaatgaaga ttatcttgta
      181 gctaatgcac ttagtccatt tttaaccatg ttaaatttca aaactcacat caaaaccaag
      241 caaaaaggca aaagtgagat tgacttatcc atctctaaag atgagtttag taaagactta
      301 gaagttctta ttgaggctaa aaagccaaat tcaaaagaat ttatcactca tacaaaggta
      361 aattctaaag ccttacacga gactatttta tattatttta gaaatagaga gtatagtttt
      421 agcttaaaat ttattatcat cacagatttt tataaatttt acatttttaa aattagtgag
      481 tttgaagagc ttttttataa aaatccaagt tttaaaaaac tttttgaaga attttgtaat
      541 ccaaattcac ttttcaaagg taatactgaa gaattctata aagaagtagc caaactcata
      601 gaaaattcca aagaaaactt aaaaggcttt ttgattgact tgacattttt aaaagacaaa
      661 caaaaatcaa attttaaaaa cctagcaagt atttataaaa cttttcatag agactttttg
      721 ctaaatgagt ttaaccccaa cgatgcaaat tcactcaaca atgcttttta caaagagctt
      781 ttatatatct tagggctttg tgagagcaaa caaaactcaa aactcatcat cgcaaaaagt
      841 gaagaaagca aagaagagca aggcactttc tacaccgcta taaattctaa gcttaaagaa
      901 gaaaattttg aaaccatctt aaaacttttg atcttatggc ttaatcgcat tttgttttta
      961 aagcttatag agtcaaattt ggtgcgtttt aatgatgata aaaatttgaa atttttaaat
     1021 ttcaaaaaaa tccctgattt tgacaagctt agcgaacttt tctttgaagt cttagccaaa
     1081 gaaaaaagca cgagaaagaa aagcgaattt gcttatctgc cttatctaaa ttcttctttg
     1141 tttgaaaaac aaagcataga aaacacactt gaaatttcaa gcttaagcaa tgacttaaag
     1201 cttttttact ataaaaacac cgtgctaaaa gatgataaat gcaaggctaa aaaaggacaa
     1261 gtggggcttt tagaatactt atttgaattt ttggatagtt ttgattttgg tagcgatgat
     1321 gagcaaagcg aaattttaag ccaaaaagaa ctcataagtt caagtgtttt aggaaatgtg
     1381 tttgaaaaac tcaatggcta caaagaagga agcttttaca cgccaagctt tatcacttct
     1441 tatatgtgca aagaaagcat cacaaaagtt gtgcttgata aattcaacgc tcaatttgat
     1501 cttgatgcta aagatataaa cgaattaaga aagtctttaa gaaaagaaga taaaaaagca
     1561 caaaaagagc ttttaaactc tataaaaatt tgcgatcctg cggtgggaag cgggcatttt
     1621 ttggtttctg ctttaaatgt tatgttaagc atttatgatg agctaaatct ttttgatgaa
     1681 gaattttatc tagaagtgca aaacgatgaa attctcatca cgggtagaaa aggcgagttt
     1741 atagagtata aacgcccaag tacgcctaaa gataaagccc atcttatcca gcaagaactt
     1801 tttcatacca aaaaagacat catagaaaac aacctttttg gagtcgatat caaccctaac
     1861 tcatgcgaga tcaccaagct aaggctttgg atagagcttt taaaacatag cttttatcaa
     1921 agctttgatg atgagaatta tcacgatctt aaaaccctgc caaacatcga tataaacata
     1981 aaatgcggaa attctttggt atcttacttt gaaacaggca aaagcctaaa ccactatcct
     2041 aacatcaaag aacgcattaa caaatacaaa cgcatagtaa aagactataa agaaggcttt
     2101 tacacagata aaagccacat caaccaagag ataaaaaatc tcaaaatttc ttttaaaaat
     2161 ttctgttttg cagataaatt taaaaaagaa atgaaaggct ttaatgataa atgcgaaaaa
     2221 tactctaaaa aatacggaaa tttcttagct ataaatgatg aaaatttgaa attctttgtt
     2281 agtgcgaatt tgactctttt tgactttgat gaaaaagaag ccacaaaaga atttgcaaat
     2341 cttaaaaaag aatacgacaa tatcttcaac ctagaaagca atcatccttt tgaatggcgt
     2401 tttgaattcc ctgaaatttt ggacgatgat ggaaatttca aaggctttga tctcatcatc
     2461 ggcaatccac cttatataaa agaaaatgat aataaagatc tttttaccaa tacaaaaaag
     2521 ttaagaactt atcaaggaaa aatggatatt tggtatcatt tcgtagggcg tggatttgat
     2581 atacttaaga ataatggata tttagcattt atcgctacaa ataattgggt tacaaattca
     2641 ggggctaaaa aactacgcaa tatagtttta gaagaatctc aaattttaag ccttgttgat
     2701 tttagttctt ttatggtgtt tgattctgca agcatacaaa ctatgataat gcaatttcaa
     2761 aaaataaaac cgcctaaaaa ttacgaattt cattttgcta aaatcacaac ccaaactcca
     2821 atttatgaag atgttataaa tcttttaaaa aatgaaaaaa cccaaaacaa tgaaatttta
//
LOCUS       DAPIWJ010000123         2826 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.125, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000123 DAPIWJ010000000
VERSION     DAPIWJ010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2826
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.125"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            60..2045
                     /locus_tag="RJ259_001620"
     CDS             60..2045
                     /locus_tag="RJ259_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family iron permease"
                     /protein_id="HDV7367296.1"
                     /translation="MLKQSIETYKKGDNLGAKKLSEDAYFQHFENMEGSIGRNIGRKA
                     ITMERKFVNLRRMYKDEAPLTQINALIDSLYYDLDEVAPILQNGYRLKAEASDINYDK
                     AKAEKSSLEANAKREADAEALIAQMMGVDKKDLAQSSLTTQAPIPINNDTSKLTDDNA
                     STDLQAAAAMDVRLQFILDNISTKFSQAANAFKEKNYQTSKDFLNDALFSDYRNTKVE
                     ILVNKFTKAGNDQKIQQAIRTLIRQINDAKIDEKGLRDGLDNIEEQIFDVFLQIPNSE
                     LSSLQISGFNDETKGKDYAKVSNDIKLALDEILKNYDGFSASIVDDLQGIYLDIFEAS
                     GMENKIGAVDSGLKLKIESLFSKSVALIKASTDKKELEATFNDLEQLIASSVDKIQDS
                     TPYSLFIWALGIILREGLEALIIVVAIVSYLVQSGNKNRLNIAYSALFTGVILSFVTA
                     FGVSWLFKENAGQSRELIEGITMLIAVLLLFYVGFWLLSNAQNKKWTSFIKQGAIDAI
                     SNNSAKTLWITVFLAVYREGAETVLFYQALLFDAKTSTDFGAVFGGLGLGILILIVLY
                     FLLKAGAIRIPVKQFFYITSYIIFYMVFVFTGKGIAELIEGKVIIPSLIPMNFEPILW
                     LGIYPYYETLIPQFIVLIMLIIGILITKQISKKGVKS"
     gene            2042..2581
                     /locus_tag="RJ259_001621"
     CDS             2042..2581
                     /locus_tag="RJ259_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HDV7367297.1"
                     /translation="MIKKVLSVVAAAAVISTNLFAGEVPIGDPKELNGMEIAAVYLQP
                     IEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKR
                     GTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVG
                     KWFEPFKVDYKFKYTGTPK"
     gene            2664..>2826
                     /locus_tag="RJ259_001622"
     CDS             2664..>2826
                     /locus_tag="RJ259_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2318 domain-containing protein"
                     /protein_id="HDV7367298.1"
                     /translation="MSIYFVHFLISVLPLSILMAFITPNKKYIFKSFFVVFLGFLFGY
                     FAFFIAAQFL"
BASE COUNT          982 a          424 c          498 g          922 t
ORIGIN      
        1 caagctcagc ttttgctagg gtagatgatt atattaatga agcaaatctt atcaaagata
       61 tgctaaaaca aagcatagaa acttataaaa agggcgataa tctaggcgcc aaaaagctta
      121 gcgaagatgc gtattttcaa cattttgaaa atatggaagg ctcaatagga agaaacatag
      181 gaagaaaagc tatcactatg gagcgtaaat ttgtaaattt gcgtcgcatg tataaagatg
      241 aagctccttt gacacaaatt aatgctttaa ttgatagtct ttattatgat cttgatgaag
      301 tagctccgat tttacaaaat ggatatcgtt taaaagcaga agcaagcgat ataaactatg
      361 ataaggctaa agctgaaaaa tcaagcctag aagccaatgc caaacgcgaa gctgatgcag
      421 aagctttaat cgcacaaatg atgggtgtag ataaaaaaga tttagcacaa agctctttaa
      481 ccacccaagc tcctatacct ataaataatg atacaagcaa acttacagat gataatgcaa
      541 gcactgattt acaagctgcc gctgcaatgg acgtaagatt gcaatttata ctagataata
      601 tctctaccaa attttcacag gcagctaatg cttttaaaga aaaaaactac caaactagta
      661 aagatttttt aaatgatgcc ttatttagtg attatcgcaa taccaaagta gaaattttag
      721 taaataaatt taccaaagca ggaaacgatc aaaaaattca acaagccata cgcaccctta
      781 tacgccaaat caacgatgca aaaatagatg aaaaaggctt aagagatggc ttagataaca
      841 tagaagaaca aatttttgat gttttcttac aaattccaaa ttcagaactt tcaagtttgc
      901 aaatttcagg ctttaatgat gaaacaaaag gcaaagatta tgccaaagtt tctaatgata
      961 tcaaacttgc tttagatgaa attttaaaaa attatgatgg ctttagtgct tctatagtag
     1021 atgatttaca aggaatttat ctagatattt ttgaagcaag cggtatggaa aataaaatcg
     1081 gtgctgtaga tagcggctta aaacttaaaa tagaaagttt attttccaaa agcgtagctc
     1141 ttatcaaagc aagtacagat aaaaaagagc ttgaagctac ttttaatgac ttagaacaac
     1201 tcatagccag cagcgtggat aaaattcaag attctactcc ttattcgctg tttatatggg
     1261 ctttaggtat tattttgcgt gaaggcttgg aagctttgat tatcgttgta gccattgttt
     1321 cttatcttgt gcaaagtggc aacaaaaatc gtttaaatat cgcctatagt gctcttttta
     1381 caggagtaat tttaagtttt gttaccgctt ttggagtttc ttggctattt aaagaaaatg
     1441 caggacaaag tagagagctt atagagggta ttaccatgct tatagccgta ttactactct
     1501 tttatgtggg cttttggcta ctttcaaacg cacaaaataa aaaatggaca agctttatca
     1561 aacaaggtgc tatagatgct atatcaaaca atagtgcaaa aaccctttgg attaccgtat
     1621 ttttagctgt ttatagagaa ggtgcagaaa ctgtgctttt ttatcaagcc ttgctttttg
     1681 atgctaaaac aagcactgat tttggtgctg tttttggcgg acttggactt ggaattttaa
     1741 tacttattgt tttatatttt cttttaaaag caggagccat tcgcatacct gtaaaacaat
     1801 ttttctatat cacttcttac attatttttt acatggtttt tgtttttaca ggcaaaggca
     1861 tagccgaact catagaagga aaagtcatca ttcctagtct tatacctatg aattttgaac
     1921 cgattttatg gcttggaatt tatccttact atgaaacttt aatccctcaa tttatagttt
     1981 taattatgct aattattggc attttaataa caaaacaaat ttcaaaaaaa ggagtaaaat
     2041 catgataaaa aaagttttat cagtagttgc tgcagctgcg gttattagta caaatttatt
     2101 tgcaggcgaa gtgccgatcg gcgatccaaa agaacttaat ggcatggaaa tagccgctgt
     2161 ttatttacaa cctattgaaa tggagccaag aggtattgat ttagctgcat ctttagcaga
     2221 tattcaccta gaagctgaca ttcacgcact taaaaacaat ccaaatggtt ttccagaagg
     2281 tttttggatg ccttatttaa ctatagctta tgaacttaaa aataccgaca caggtgcaat
     2341 taaacgtgga actttgatgc ctatggtggc tgatgatggt cctcactatg gtgcaaatat
     2401 tgctatggaa aaagataaaa aaggtggctt tggcgtagga aattatgaac ttacttttta
     2461 tatctcaaat ccagaaaaac aaggttttgg acgccatgtt gatgaagaaa caggtgtggg
     2521 taagtggttt gaacctttta aagtagatta taaattcaaa tacacaggca cgccaaaata
     2581 attttacgct cggattttcc gagtgtttga atatttttat ttttatttga aaaattaaaa
     2641 taacaatgtt taaagagtaa attatgagta tatattttgt gcattttctt atcagtgttt
     2701 taccgctaag tattttaatg gcctttatca ctcctaataa aaaatatatt tttaaaagtt
     2761 ttttcgtagt ttttttgggc tttttatttg gatattttgc tttttttatc gcagcacaat
     2821 ttttaa
//
LOCUS       DAPIWJ010000124         2726 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.126, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000124 DAPIWJ010000000
VERSION     DAPIWJ010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2726
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.126"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            97..1905
                     /locus_tag="RJ259_001623"
     CDS             97..1905
                     /locus_tag="RJ259_001623"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HDV7367299.1"
                     /translation="MEKEVIAYLDNETIIDSQSVKNTNLKEIYFDNSKESLEVIRHSC
                     AHLMAQAIKSLYPEAKFFVGPVIEDGFYYDFRVESKIGEEDLVKIEKKMKELAEAKIE
                     ISKYEITKSEALAKFQNDDLKQEVLLRIPDRAVSIYKQGEFEDLCRGPHVPNTKFLRF
                     FKLTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEYLTIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKISGHY
                     ANYKENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSG
                     VLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKA
                     IGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQV
                     DFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVG
                     IVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEV
                     AKRSVALRDRRAKEQKNLSLDEFIKLVKEKMSEVHF"
     gene            1902..2420
                     /locus_tag="RJ259_001624"
     CDS             1902..2420
                     /locus_tag="RJ259_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HDV7367300.1"
                     /translation="MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     YKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWTMIENEANRDKEPNFEG
                     RYVNMLVTPKKA"
     gene            2459..>2726
                     /locus_tag="RJ259_001625"
     CDS             2459..>2726
                     /locus_tag="RJ259_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HDV7367301.1"
                     /translation="MKENPSFLKEQIITYLGNKRALLSFLNNGFKVAKKELGKDKFSF
                     CDIFSGSGVVSRFAKAHSNYILANDLEDYSKLINECYLANKDKDL"
BASE COUNT         1006 a          318 c          565 g          837 t
ORIGIN      
        1 aataagctga atttcaaaaa taattaagtc ttagaaagtt aaaattagaa ctttataaac
       61 actcacaggg taagtgagcg acaaagggtt aaaaatatgg aaaaagaagt tattgcgtat
      121 ttggacaatg agacaataat tgactctcaa agtgtgaaaa atacaaattt aaaagaaatt
      181 tattttgata attctaaaga aagtttagaa gtaatccgtc attcttgtgc gcatttaatg
      241 gcacaggcga ttaagagttt gtatcctgaa gctaaatttt tcgttggtcc tgttatagaa
      301 gatggatttt attatgattt tcgtgtggaa agtaagattg gcgaagaaga tttggtaaaa
      361 attgaaaaaa agatgaaaga acttgctgaa gcaaagattg aaatttcaaa atatgaaatc
      421 acaaaaagcg aagctttggc taaatttcaa aatgatgatt taaaacaaga agttttattg
      481 cgtattcctg atagagctgt aagtatttat aaacaaggtg aatttgaaga tttgtgtcgt
      541 ggtcctcatg tgccaaatac gaaattttta cgctttttta aactcactcg tgttgcagga
      601 gcgtatttgg gtggcgatga aaaaagagaa atgcttactc gaatttatgg aactgctttt
      661 gcagataagg aaagtttaaa agagtattta accattattg aagaagctaa aaaacgcgat
      721 catagaaagc ttggaacaga gcttaagctt tttacttttg atgatgagat cggaggaggt
      781 cttcctattt ggttgagtaa tggtgcaaga cttagatcta aacttgaaca tatgctttat
      841 aagatccatc gtttacgtgg ttatgagcct gtgcgtgggc ctgaactttt aaaagcagat
      901 gcatggaaaa tcagtgggca ttatgcaaac tataaagaaa atatgtattt tacacaaatt
      961 gatgaacaag aatatggcat taagcctatg aactgtgtgg gacatattaa aatttatcaa
     1021 agtgatgtaa gaagttatcg tgatttgcct ttgaaatttt ttgaatacgg cgtggtacat
     1081 cgtcatgaaa aaagtggcgt tttgcatgga ctttttagag tgagagaatt cactcaagat
     1141 gatgcacata ttttttgtat gccaagtcag attaaagagc aggttttaga aattttagct
     1201 tttgtggata atttgatgaa attatttgat tttagctatg aaatggaaat ttcaactaaa
     1261 cctgaaaaag ccataggtga tgatgaaatt tgggaaatag cgactaaggc tttaaaagaa
     1321 gctttagatg aacaaggttt aaaatacggt attgatgaag gtggcggggc tttttatggg
     1381 ccaaagattg atattaaaat caccgatgct ttaaaaagaa agtggcaatg cggaaccata
     1441 caagtagatt ttaacctgcc aagtcgtttt aaacttgaat acactgatag tgataatgaa
     1501 aaaaaacaac ctgtaatgtt gcatcgtgcg attttaggtt cttttgaaag atttatagga
     1561 attttaaccg agcattgtgc gggtgagttt ccatttttta tcgcaccaac tgcggtgggt
     1621 atagtgccaa taggcgaagc acatattgct tacgcaaaag aaattcaaaa agaattatta
     1681 gagcttaata tcgatagcga ggtgtatgaa aaaaatgaga gcttaagtaa aaaaattcgt
     1741 atcgctgaaa agcaaaaatt acctatgatt ttagttttag gcgatgatga ggtggcaaag
     1801 cgtagcgttg ctttaagaga tagaagagct aaagaacaaa aaaatcttag cttggacgaa
     1861 tttattaaat tagttaagga gaaaatgagt gaggtacact tttgagtaaa gaaaaagaag
     1921 tattgctcaa tgaagaaata agagcggatg aaatcagatg tgttggcgat gatggcaaag
     1981 tttatggtat tatcagtagt gatgaagctt tagaaattgc aaatcgttta ggacttgatc
     2041 ttgtaatgat agctgcagat gctaagccac ctgtttgcaa gatcatggac tatggtaaat
     2101 tccgttatca acaagagaaa aaacaaaaag aagcaaagaa aaaacaaaaa gtgattgata
     2161 taaaagaaat caaactttct gtaaaaattg ctcaaaatga tattaattac aaggtaaaac
     2221 atgctttaga atttttagaa caaggtaagc atgtgagatt tcgtgtgttc ttaaaaggac
     2281 gtgaaatggc aactcctgaa gcaggtgtag ctttgcttga aaaaatttgg actatgatag
     2341 aaaatgaagc taatcgtgac aaagagccaa attttgaagg tcgttatgta aatatgcttg
     2401 taactccaaa aaaagcttaa tccacttttg tagataaagc ttttaaaggt tttaaatttt
     2461 gaaagaaaat ccttcttttt taaaagagca aattataact tatcttggaa ataaaagagc
     2521 acttttaagt tttttaaata atggctttaa ggtagctaaa aaagaacttg gtaaagataa
     2581 atttagtttt tgtgatatat ttagtggctc aggtgttgta agtcgttttg caaaagcaca
     2641 ctcaaattat attttagcca atgatttaga agattattca aaactcatca atgagtgtta
     2701 tcttgctaat aaagacaaag atttac
//
LOCUS       DAPIWJ010000125         2617 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.127, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000125 DAPIWJ010000000
VERSION     DAPIWJ010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2617
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.127"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            24..1448
                     /locus_tag="RJ259_001626"
     CDS             24..1448
                     /locus_tag="RJ259_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HDV7367302.1"
                     /translation="MKKLTNDFGNIIADNQNSLSAGAKGPLLMQDYLLLEKLAHQNRE
                     RIPERTVHAKGSGAYGEIKITADLSAYTKAKIFQKGEVTPLFLRFSTVAGEAGAADAE
                     RDVRGFAIKFYTKEGNWDLVGNNTPTFFIRDAYKFPDFIHTQKRDPRTHLRSNNAAWD
                     FWSLCPESLHQVTILMSDRGIPASYRHMHGFGSHTYSFINDKNERFWVKFHFKTQQGI
                     KNLTNQEAAELIAKDRESHQRDLYNAIENKDFPKWKVQVQILAEKDIEKLGFNPFDLT
                     KIWPHSFVPLMDIGEMILNKNPQNYFNEVEQAAFSPSNIVPGIGFSPDKMLQARIFSY
                     PDAQRYRIGTNYHLLPVNRAKSEVNTYNVAGAMNFDSYKNDAAYYEPNSYDNSPKEDK
                     SYLEPDLVLEGVAQRYAPLDNDFYTQPRALFNLMNDDQKTQLFHNIAASMEGVDEKII
                     TRALKHFEKISPDYAKGIKKALEK"
     gene            1505..1975
                     /locus_tag="RJ259_001627"
     CDS             1505..1975
                     /locus_tag="RJ259_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj1386 family hemin-binding protein"
                     /protein_id="HDV7367303.1"
                     /translation="MTTLSLEEEKRFEELCKMAFNFARNNECENLKIMIEAGLNVNLK
                     THKGDSLLMLAAYNNSYESAKMLLEKGAKVDEKNDRGQTPLAGVCFKGYLPMCELLVK
                     YGANIDENNGLGMTPYTFAIMFGRKDVAEFLLKKSKNNFLKKMSLKILKFIKKF"
     gene            complement(1976..>2617)
                     /locus_tag="RJ259_001628"
     CDS             complement(1976..>2617)
                     /locus_tag="RJ259_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDV7367304.1"
                     /translation="KQQFIKLTYFLGEVLGEQYEIVFHVITEDGAYIAAIANNHISGR
                     SLDSPLTAFASELMQNKKYLEKDFLCDYKALVGKSKLIRGSTFFIKNHDKLVGILCIN
                     HDTSIMRDLICKMIDLEKIGDMGDILGNISFSQNDSSIETLSHSIEDILVQSVDSSYL
                     NSDYQLSIAQKEEIAEKLYEKGIFNIKGAVPIVAKFLKISEPSVYRYLKKFKK"
BASE COUNT          982 a          398 c          400 g          837 t
ORIGIN      
        1 aatttattat ttaggagaaa acaatgaaaa aattgactaa cgattttgga aacattatag
       61 ctgataacca aaattcatta agcgcaggcg caaaaggacc tttacttatg caagattatc
      121 ttttgcttga aaaacttgct catcaaaata gagaaagaat tccagaaaga accgttcatg
      181 ctaagggaag tggagcttat ggcgaaataa aaattacagc agacttaagt gcttatacca
      241 aagctaaaat ttttcaaaaa ggcgaagtta ctccattatt tttacgcttt tcaacagtag
      301 caggtgaagc aggtgcagca gatgctgaac gcgatgtgag aggttttgct attaaatttt
      361 acactaaaga aggaaactgg gacttggtag gaaataacac tccgacattc ttcatccgcg
      421 atgcttataa attccctgat ttcatccata ctcaaaaaag agatccaaga actcatctaa
      481 gaagtaataa tgctgcttgg gatttttgga gtttatgtcc tgaaagttta catcaagtaa
      541 ccattcttat gagcgataga ggaattcctg caagttatcg tcatatgcat ggatttggaa
      601 gccatactta tagttttatt aatgataaaa atgaaagatt ttgggtgaaa ttccatttta
      661 aaacccaaca agggattaaa aatcttacca accaagaagc tgccgagctt atagcaaaag
      721 atagagaaag tcatcaaaga gatctctata atgctataga aaataaagat tttccaaaat
      781 ggaaagttca agttcaaatt cttgctgaaa aagatataga aaaacttgga tttaatcctt
      841 ttgatttaac aaaaatttgg cctcatagtt ttgtaccttt gatggatata ggcgaaatga
      901 ttctaaacaa aaatcctcaa aattatttta atgaagttga acaagctgcc tttagtccaa
      961 gcaatatcgt tcctggaatt ggctttagcc ctgataaaat gttgcaagct agaatttttt
     1021 catatcctga tgcacaaaga tatagaatag gaactaatta tcatctttta ccagtaaatc
     1081 gtgcaaaaag cgaagtgaat acttacaatg tcgctggtgc tatgaatttt gatagttata
     1141 aaaatgatgc tgcttattat gaaccaaaca gctatgataa tagcccaaaa gaagacaaaa
     1201 gctatcttga acctgattta gtcttagaag gcgtagcaca aagatatgct ccactagata
     1261 atgactttta tactcaacca agagctttat ttaatcttat gaatgatgat caaaaaactc
     1321 aactttttca taatatcgcc gcttctatgg aaggagttga tgaaaaaatt atcactagag
     1381 ctttaaaaca ttttgaaaaa atttcacctg attatgcaaa aggaattaaa aaagctttag
     1441 aaaaataatt tttacttgcc acttttggtg gcaaactaaa gattataata attaaggaaa
     1501 aacaatgaca actcttagtt tagaagaaga aaaaagattt gaagagcttt gcaaaatggc
     1561 ttttaatttt gcaagaaata atgaatgtga aaatcttaaa atcatgatag aagcaggttt
     1621 aaatgtaaat ttaaaaactc ataaaggcga tagcttgctt atgcttgcag cttataataa
     1681 ttcttatgaa agcgctaaaa tgcttttaga aaaaggtgca aaagtagatg aaaaaaacga
     1741 tcgtggacaa accccattag cgggagtttg ttttaaagga tacttaccta tgtgtgaact
     1801 tttagttaaa tatggagcaa atattgatga aaacaatggt ttaggaatga caccttatac
     1861 ttttgctatt atgtttggac gcaaagatgt ggcagaattt ttactcaaaa aatctaaaaa
     1921 taatttttta aagaaaatga gcctaaaaat actaaaattt atcaaaaaat tttagttatt
     1981 ttttaaattt cttcagatac ctataaacac taggttctga aatttttaaa aattttgcta
     2041 cgataggaac cgctcctttt atattaaaaa tacctttttc atatagcttt tcagcaattt
     2101 cttctttttg agcaatgctt aattgataat cagaatttaa ataactagaa tctacacttt
     2161 gaactaaaat atcctctatc gagtgactta atgtttctat gcttgaatca ttttgagaaa
     2221 aactaatatt tcctaaaata tcacccatat ctccaatttt ttctaaatca atcatcttgc
     2281 atattaaatc tctcataatg ctagtatcat gattgataca caaaatacct actaatttgt
     2341 catgattttt aataaaaaaa gtagatcctc taattaattt tgattttcca acaagagcct
     2401 tataatcaca taaaaaatct ttttctaaat attttttatt ttgcataagc tcacttgcaa
     2461 aagcagtcaa gggagaatct aaacttctcc cactaatgtg attgttagca attgccgcaa
     2521 tataggcccc atcttcagta attacatgaa aaactatctc atattgctca cctaaaactt
     2581 ctcctaaaaa atatgtcaac tttataaatt gttgttt
//
LOCUS       DAPIWJ010000126         2325 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.128, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000126 DAPIWJ010000000
VERSION     DAPIWJ010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2325)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2325)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2325
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.128"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..280
                     /locus_tag="RJ259_001629"
     CDS             <1..280
                     /locus_tag="RJ259_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-2,3 sialyltransferase"
                     /protein_id="HDV7367305.1"
                     /translation="YLMKRYDVNIYSLNSDEYFKLAPDIGSDFVLSKKPKKYINDILI
                     PDKYAQERYYGKKSRLKENLHYKLIKDLIRLPSDIKHYLKEKYANKNR"
     gene            261..1292
                     /gene="neuB1"
                     /locus_tag="RJ259_001630"
     CDS             261..1292
                     /gene="neuB1"
                     /locus_tag="RJ259_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialic acid synthase"
                     /protein_id="HDV7367306.1"
                     /translation="MQIKIDKLTISQKNPLIIPEIGINHNGSLEIAKLMVDAAKRAGA
                     KIIKHQTHIVEDEMSQEAKNVIPGNANISIYEIMEQCALNYKDELALKEYVEKQGLVY
                     LSTPFSRAAANRLEDMGVSAYKIGSGECNNYPLIKHIAQFKKPMIISTGMNSIESIKP
                     TVKILRDYEIPFVLLHTTNLYPTPSHLVRLQAMLELYKEFNCLYGLSDHTTNNLACIG
                     AIALGASVLERHFTDTMDRKGPDIVCSMDESTLKDLINQTQEMVLLRGDNNKNPLKEE
                     QVTIDFAFASVVSIKDIKKGEILSMDNIWVKRPSKGGISAKDFEAILGKRAKKDIKNN
                     IQLTWDDFE"
     gene            1289..>2325
                     /gene="neuC"
                     /locus_tag="RJ259_001631"
     CDS             1289..>2325
                     /gene="neuC"
                     /locus_tag="RJ259_001631"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HDV7367307.1"
                     /translation="MKKIVFVSGTRADFSKIKSLMMKVENSNEFELFIFVTGMHMSKK
                     FGSTYMEIEKCGFKNIYKYINHDKYYQMDKALSSTIDGFSKFIHEIEPDLIVVHGDRV
                     EPLAAAIVGSLNNILVAHIEGGELSGTIDESLRHAISKLAHIHLVNDEIAKKRLIQMG
                     EDEKSIFIIGSPDLELLNNTISLDEAKKYYDIKFKNYAIAIFHPITTEINSLYKQSEE
                     FVNALIKSEKNYIVIYPNNDLGFELILQNYERLKNNERFKIFPSLRFEYFISLLKNAN
                     FIIGNSSCIIKEALYLNINGILVGSRQDGRTDINKTIRVNAEEKDILEAILNTSKCTN
                     ITNKRLEILNSS"
BASE COUNT          966 a          248 c          392 g          719 t
ORIGIN      
        1 ttatctaatg aaaaggtatg atgtgaatat ttatagttta aattcagatg agtattttaa
       61 attggctccg gatattggaa gtgattttgt attgagtaaa aaaccaaaaa aatatataaa
      121 tgatatattg ataccagata agtatgcaca agaaagatat tatggaaaaa aaagtaggtt
      181 aaaagaaaat ctccattata agctaataaa agatctaatt agacttccaa gtgacataaa
      241 acactactta aaggaaaaat atgcaaataa aaatagataa attaactatt tctcagaaaa
      301 atcctttgat aatccctgaa ataggtataa atcacaatgg tagtttagaa atagcaaaac
      361 ttatggtaga tgcggccaaa agagcaggag ctaagataat aaaacaccaa actcatatag
      421 tcgaagatga aatgagccaa gaggctaaaa atgttatacc gggtaatgca aatattagca
      481 tttatgagat tatggaacaa tgtgcattaa actataaaga tgaactagct ttaaaagagt
      541 atgtagagaa gcaaggtttg gtatatctta gcactccatt tagtagagct gcagcaaatc
      601 gtttagaaga tatgggtgta agtgcttata aaataggctc aggtgaatgt aataattatc
      661 ctttaataaa acatatagca caatttaaaa aacctatgat tataagcacc ggaatgaata
      721 gcatagaaag tataaaaccc acagttaaga tacttagaga ttatgaaata ccttttgttt
      781 tgcttcatac tacaaattta tatcctactc catcgcactt agtaagatta caagctatgt
      841 tagaattata taaagagttt aattgtcttt atggacttag tgatcatacc acaaacaatc
      901 ttgcatgtat aggtgcaata gctcttggag caagtgtact agaaagacac tttacagata
      961 ccatggacag aaaaggccct gatatagttt gctctatgga tgaaagcact ttaaaagatc
     1021 ttataaatca aacacaagaa atggtgcttt taagaggcga taataataaa aatcctttaa
     1081 aagaagagca agtgaccatt gattttgcat ttgctagtgt agtaagtatt aaagatataa
     1141 aaaagggtga aattttatct atggataata tttgggtaaa aagaccttca aaaggtggta
     1201 taagtgcaaa ggattttgaa gccatacttg gaaaaagagc aaaaaaagat ataaaaaata
     1261 atatacaact aacatgggat gattttgaat gaaaaaaata gtttttgtta gcggaactag
     1321 agctgatttt tctaaaataa aatctctaat gatgaaagtt gaaaattcaa atgaatttga
     1381 attatttata tttgtaaccg gtatgcatat gagtaaaaag tttggttcta cttatatgga
     1441 aatagaaaaa tgtggtttta aaaatatata taaatatata aatcacgata agtattatca
     1501 gatggataag gctttatcat caacaataga tggtttttct aaatttatac atgagataga
     1561 gcctgattta atagtagtgc atggtgatag agtggagcct ttagctgctg ctatagtagg
     1621 aagtttaaat aatatcttag tggcacatat agaaggcgga gagctttcag gaactataga
     1681 tgagagttta agacatgcta ttagtaaatt agcacatatt catttagtaa atgatgaaat
     1741 agcaaaaaaa agattaatac aaatgggtga agatgagaaa tctattttta ttataggttc
     1801 tcctgattta gaattgctaa ataatactat atctttagat gaagcaaaaa aatattatga
     1861 tataaaattt aaaaattatg ccatagctat atttcatcca attacaaccg aaataaactc
     1921 tttatataaa caaagtgaag aatttgtaaa tgctcttata aaaagtgaaa aaaattatat
     1981 agttatttat ccaaataatg atttaggatt tgaattaatt ttgcaaaatt atgaaaggct
     2041 aaaaaataat gaaagattta aaatttttcc ttctttaaga tttgagtatt ttataagttt
     2101 gctaaaaaat gccaatttta tcataggaaa ttcaagttgt ataataaaag aagctttata
     2161 tcttaatata aatggaattt tagttggttc aagacaagat ggtagaactg acattaataa
     2221 aacaataaga gtaaatgcag aggaaaagga tatattggaa gcgattttaa atactagtaa
     2281 atgcactaat attacaaata aaagactaga aattttaaat agttc
//
LOCUS       DAPIWJ010000127         2223 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.129, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000127 DAPIWJ010000000
VERSION     DAPIWJ010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2223)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2223)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2223
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.129"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..>2223
                     /locus_tag="RJ259_001632"
     CDS             <1..>2223
                     /locus_tag="RJ259_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002904219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HDV7367308.1"
                     /translation="ALENMRRYQEAAKYYELAIKHSKTKDSHLYYKAGFCYERDGQTD
                     SKLIKYLYANAIKYDDDLNSKILGIGIFHQSNKCWEEANKAYLDFYKYVKNSCSDVLL
                     YNIAYSFEKLFNYQEAEKYYKKALELNYQECDFHYRLGIVLEKMAKYEEASIYYENTI
                     KRSNTHRPFLYFRLCKCLNALEEYKKLSEILSQSQIIQNQPYGLSEDILKDKNLRRRV
                     FYTECYKNLKIIDNMILYESFHGKSMSCNPYAIFLYLLEQNAFKDFTHIWVVNDLSIV
                     KNKFKKMKNVICVKRGSDLYLKYLASAKYLINNVTFPEYFIRKEEQKYLNTWHGIPIK
                     YLGKKIKSGFMEHANTQRNFLHATHLIHPNLYTKDILENDYEIKDLFQGQSVLTGYPR
                     VDLSLKQNAKLKQKLGIKESQKVLLYAPTWRGGLNTQYFDFERLKRDILELKKSNFKV
                     LLSVHHEIKHLFESKLFKDVLIPSYIEMNELLSIVDVLITDYSSVMFDFMVLERPIIC
                     YVYDYEHYKQERGLYFDVDEITHHICKTIEEVKEVLNLENLFVKDDLYLTRLKRKFYS
                     LENGKSCERVVSIFFDNVEIRKNIEVCNNILFYTGPFIPNGITNSFKNLIHHLQNSHF
                     NIFVSIDPNSIYSHKERLEQFQLVSENIKVLPRIGSLNLTLEEFCIEKENLDEEKSLQ
                     NYKREFRRLYADVKFKTVINFEGYNVFWVKLFSSVNNNLIFLHNNMQGEFEKRFPYLE
                     "
BASE COUNT          876 a          222 c          345 g          780 t
ORIGIN      
        1 tagctcttga aaacatgaga agatatcaag aagcggcaaa atattatgaa ctggctataa
       61 aacatagtaa aacaaaagat tcccatttat attacaaagc cggtttttgc tatgagcgtg
      121 acggacaaac agattctaaa ttaataaaat atttatatgc aaatgcaatt aaatatgatg
      181 atgatttaaa ttcaaaaatt ttaggaatag gaatatttca tcaaagtaat aagtgttggg
      241 aagaagcaaa taaggcttat ttagattttt ataaatatgt taaaaattcg tgcagcgatg
      301 tgttgttata taacatagct tacagttttg aaaaattatt taactaccaa gaagctgaaa
      361 aatattataa aaaagcttta gagttaaatt atcaagaatg cgattttcac tatagactag
      421 gtattgtttt agaaaaaatg gccaaatatg aagaagctag tatttattat gaaaatacaa
      481 taaaaagaag taatactcat cgtccatttt tatattttcg tttatgcaaa tgtttaaatg
      541 ctttagaaga atacaaaaag ttaagtgaaa tattatcaca atctcaaatt attcaaaatc
      601 aaccttatgg gttatctgaa gatattctaa aggataaaaa tcttagaaga agagtttttt
      661 atactgaatg ttataaaaac ttaaaaatta tagacaatat gattttgtat gagagttttc
      721 atggaaagtc aatgtcgtgt aatccttatg caatattttt atatctttta gagcaaaatg
      781 cttttaaaga ttttactcac atatgggtag ttaatgattt aagtattgtc aaaaataaat
      841 ttaaaaaaat gaaaaatgtt atttgcgtta aaagaggtag tgatttatat ctcaaatatt
      901 tggcaagtgc aaaatatttg attaataatg tcacttttcc tgaatatttt atcagaaaag
      961 aagagcaaaa atatttaaat acttggcatg gcataccaat taaatatttg ggtaaaaaaa
     1021 taaaatctgg ttttatggag catgcaaata cccaacgaaa ttttttacat gctacacacc
     1081 taattcatcc aaatttatat acaaaggata ttttagaaaa tgactatgaa attaaagatt
     1141 tatttcaagg acaatctgtt ttaacgggat atccaagggt tgatttatca ttaaaacaaa
     1201 atgctaaatt aaaacaaaaa ctaggtatta aagagagtca aaaagtttta ctttatgcac
     1261 caacttggag aggtggttta aatactcagt attttgactt tgaacgctta aagcgagata
     1321 ttttagagct caaaaaaagt aattttaaag ttttattatc ggttcatcat gaaatcaaac
     1381 atctttttga aagtaagtta tttaaggatg tgttaattcc atcttatata gaaatgaatg
     1441 agttgttgtc tattgtagat gttttgatta cagactactc ttctgtaatg tttgatttta
     1501 tggttttgga aagacctatt atttgttatg tgtatgatta tgagcattat aaacaagaaa
     1561 gaggattgta ttttgatgta gatgagataa cacatcatat ttgcaagacg atagaagaag
     1621 taaaagaagt tttaaacttg gaaaatttat ttgtaaaaga tgacttgtat ttgacaagat
     1681 taaaacgtaa attttatagt ttggaaaatg ggaaatcttg tgaaagagtg gtatcgatat
     1741 tttttgataa tgttgaaatt cgaaaaaata ttgaagtttg taacaatatc ttattttata
     1801 caggcccgtt tatacctaat ggtattacaa attctttcaa aaatttaata catcatttgc
     1861 aaaattcgca ttttaatatt tttgtatcta tagatcccaa ttctatttat tctcacaagg
     1921 aaagattaga acaatttcaa ttagtatccg aaaatatcaa agtattacct agaataggat
     1981 ctttaaattt aactttagaa gaattttgta tagaaaaaga aaatcttgat gaagaaaagt
     2041 ctttacaaaa ttataaaaga gaatttagga gattgtatgc agatgtaaaa tttaaaacag
     2101 tgattaattt tgaaggttat aatgtatttt gggtaaagtt attttctagt gtaaataata
     2161 atttgatttt tttacataat aacatgcaag gggaatttga gaaaagattt ccttaccttg
     2221 agc
//
LOCUS       DAPIWJ010000128         2194 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.130, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000128 DAPIWJ010000000
VERSION     DAPIWJ010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2194)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2194)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2194
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.130"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1476)
                     /locus_tag="RJ259_001633"
     CDS             complement(<1..1476)
                     /locus_tag="RJ259_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDV7367309.1"
                     /translation="MQIEEIQNYPANLPVLVEDELFLYPFMITPIFINDSSNMKALDL
                     AIKNDSMLFVAPSKLENGRNFDEIYNCGVIGTIMRKVPLPDGRVKILFQGYAKGKIIE
                     QISNKPLEAKIELIKEDFLEGTKKEALLEVLKEKVKNLANISHYFSPDLLRTIEEGFD
                     ASRICDLILNTVRIKKQVAYEFFVLTDLEQKLVKLIDLIAQEIEANKIQKEIKNKVHS
                     RIDKVNKEYFLKEQLRQIQKELGSDTQKEDEVREYQKRLELKKKFMHEDAYKEIKKQI
                     EKFERIHQDNSEASMIQTYIETALDIPFEKISKKKLDIKEVSKQLNHDHYALNKPKER
                     IEEYFAVRELLEKRKIAEKDGAKVILCLYGPPGVGKTSLANSVSKALKRELIRIALGG
                     LEDVNELRGHRRTYIGAMPGRITQGLIEAKQINPVIVLDEIDKLNRSFRGDPSAVLLE
                     ILDPEQNSKFRDYYLNFNIDLSKVIFIATANDISNIPAPLRD"
     gene            complement(1493..2140)
                     /locus_tag="RJ259_001634"
     CDS             complement(1493..2140)
                     /locus_tag="RJ259_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HDV7367310.1"
                     /translation="MKKGIFLLVFLSVFFSACSTKNDEGLYNLSASEWYKQIIKDLQD
                     KDLEKADDHYNGMASEHVADPLLETTLIILAQAHMDEEEYKLAEFYLDEYNKKFGNSR
                     NADYIRYLKIKAKFDAFAVPNRNQALMLESQKEIDTFLKDYPYTEYEPLVQTMLTKFN
                     LAVFYLNSTIENLYQRIGHDESAQIYKQRLQESEFYQQSIIKPELPWYRSIFERF"
BASE COUNT          698 a          387 c          261 g          848 t
ORIGIN      
        1 atctcttaaa ggtgcaggaa tattgctaat atcatttgcc gttgctataa aaatgacttt
       61 acttaaatca atattaaaat ttaaataata atccctaaat ttagaatttt gctctggatc
      121 taaaatttct aaaagcaccg cacttggatc gcctctaaaa ctgcgattta atttatcaat
      181 ttcatccaat acaattacag gattaatttg ttttgcctct atgagtcctt gggtaatacg
      241 tccaggcata gcgcctatat aagttctacg atgaccacgt agctcattaa catcttcaag
      301 tccgcctaag gctatgcgaa taagctctct ttttaaagct tttgaaacag aatttgccag
      361 tgaagtttta cccacgccag gaggtccata aagacaaagt ataactttag caccatcttt
      421 ttctgctatt tttctttttt ctaaaagttc cctaactgca aaatattctt ctatgcgttc
      481 ttttggttta tttaatgcat aatgatcatg gttgagctgt tttgaaactt ctttaatatc
      541 aagttttttc ttagaaattt tttcaaaagg aatatctaat gctgtttcta tgtaagtttg
      601 aatcatcgat gcttcggaat tatcttgatg aatgcgttcg aatttttcaa tttgtttttt
      661 gatttcttta taagcgtctt cgtgcataaa tttcttcttt agctccagac gcttttgata
      721 ctctctaacc tcatcttctt tttgtgtgtc agaaccaagc tctttttgaa tttgtcttaa
      781 ttgttctttt aaaaaatatt ctttatttac cttatcaata cgagaatgta ctttattttt
      841 aatttctttt tgaattttat tggcttctat ttcttgggca attaaatcta ttaattttac
      901 taatttttgc tcaagatctg ttaaaacaaa aaactcataa gcaacttgtt ttttaatacg
      961 cacagtattt aaaatcaaat cacaaatcct agacgcatca aaaccttctt caattgttct
     1021 taaaagatcc ggagaaaaat aatgactaat atttgccaaa ttttttacct tctcttttaa
     1081 aacttcaaga agcgcttctt ttttagttcc ttctaaaaag tcttctttta taagttctat
     1141 cttggcttct aaaggtttat tagaaatttg ctctataatt ttacccttag catatccttg
     1201 aaaaagtatt ttcacccttc catcaggtaa aggaactttt cgcatgatag tcccaatcac
     1261 tccgcaatta taaatttcat caaaatttct tccattttcc aactttgaag gtgcaacaaa
     1321 aagcatgcta tcatttttaa tcgcaagatc taaagctttc atattggatg aatcgttaat
     1381 aaaaatagga gttatcataa aaggatataa aaataattca tcttcaacca atactggtaa
     1441 atttgctgga taattttgta tctcttcaat ctgcatttat tttccttgtt tattaaaatc
     1501 tttcaaatat acttctatac caaggaagct caggtttgat aatactttgc tgataaaatt
     1561 cactttcttg aagtctttgt ttataaattt gtgcactttc atcatgccct atgcgctggt
     1621 atagattttc tatagtacta ttaagataaa aaaccgctaa attaaatttt gtaagcattg
     1681 tttgaaccaa aggttcatat tctgtataag gataatcttt caaaaaagta tctatttctt
     1741 tttggctttc aagcattaaa gcctgattac gatttggcac tgcaaatgca tcaaattttg
     1801 ccttaatttt aagataacga atataatcag cattgcgtga atttccaaat tttttattat
     1861 attcatctaa ataaaattca gctaacttat attcctcttc atccatatga gcttgtgcta
     1921 aaataattaa agtagtttcc aataaaggat cggcaacatg ctcacttgcc ataccattat
     1981 aatgatcatc agctttttcc aaatccttgt cctgcaaatc tttaataatt tgcttatacc
     2041 actcactagc actaagattg tataaacctt catcattttt cgtactacac gcactaaaaa
     2101 aaacacttaa aaaaaccaat aaaaaaatac cttttttcat acttcacctt gatttatatt
     2161 ctcaaaaata tatattttaa cgattttata atta
//
LOCUS       DAPIWJ010000129         2154 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.131, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000129 DAPIWJ010000000
VERSION     DAPIWJ010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2154)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2154)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2154
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.131"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..528
                     /locus_tag="RJ259_001635"
     CDS             <1..528
                     /locus_tag="RJ259_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367311.1"
                     /translation="MICLNYIDLNEEYIFTQEVDEDNKKSRITTSFLKFSRYSDFGKN
                     LIQEAEKIINKRKKISWGVIGPWFLADHVKKCGLENFVWDYKRTCQIPWCNVKIFLDN
                     TSIDISQPFLHLFSEMWRLNNMEKNTFHQMGVYGQLLKKHEIEKLYNQINTCLKTSML
                     DNIASFLTKFFIKKL"
     gene            complement(523..1185)
                     /locus_tag="RJ259_001636"
     CDS             complement(523..1185)
                     /locus_tag="RJ259_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase family
                     protein"
                     /protein_id="HDV7367312.1"
                     /translation="MTLAIIPARAGSKGIKNKNLALLHDRPLLYYTINAAKNSKYVDK
                     IVLSSDGDDILEYGQTQGVDVLKRPKELALDDTTSDKVVLHTLSFYKDYENIVLLQPT
                     SPLRTNVHIDEAFLKFKNENSNALISVVECDNKILKAFIDDNGNLKGICDNKYPFMPR
                     QKLPKTYMSNGAIYIVKSNLFLNNPTFLQEKTSCYIMDEKASLDIDTTEDLKRVNNIS
                     FL"
     gene            complement(1216..2133)
                     /locus_tag="RJ259_001637"
                     /pseudo
     CDS             complement(1216..2133)
                     /locus_tag="RJ259_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852888.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,4-N-acetylgalactosaminyltransferase"
BASE COUNT          750 a          300 c          250 g          854 t
ORIGIN      
        1 atgatatgtt taaattatat tgatttaaat gaagaatata tctttacaca agaagtggat
       61 gaagataata aaaaatcaag aatcacaaca tcctttttaa aattttctcg atattcagat
      121 tttggaaaaa atcttataca agaagcagaa aaaatcatta ataaaagaaa aaaaatctcg
      181 tggggtgtta taggaccttg gtttttagct gatcatgtaa aaaaatgtgg tttagaaaat
      241 tttgtttggg attataaaag aacttgtcag attccatggt gtaatgtaaa aattttttta
      301 gataatactt caatagatat cagtcaacct ttcttacatt tattttcaga aatgtggaga
      361 ttaaataata tggagaaaaa tacttttcat caaatgggag tttatggaca acttttaaaa
      421 aaacatgaga tagaaaaatt atataatcag ataaatactt gtttaaaaac atcaatgcta
      481 gataatatag catccttttt aaccaagttt tttataaaaa aattataaga agcttatatt
      541 attaactctt tttaaatcct ctgttgtatc tatatccaaa ctagcttttt cgtccattat
      601 atagcaactt gttttttctt gtagaaaagt tgggttattt aaaaataaat ttgactttac
      661 tatataaatt gcaccattac tcatataagt ttttggtaat ttttgtctag gcataaatgg
      721 atatttgtta tcacaaattc cttttaagtt accattatca tctataaaag cttttaaaat
      781 tttattatca cattctacaa cacttattaa tgcatttgag ttttcatttt taaattttaa
      841 aaaagcttca tctatatgta catttgtcct taaaggagaa gtgggttgta ataaaacaat
      901 attttcataa tctttataaa aactcaaggt atgcaataca accttatcac tagttgtatc
      961 atctagcgct aattctttag gtctttttaa cacatctaca ccttgagttt gtccatattc
     1021 taatatatca tcgccatcac tacttaaaac aattttatct acatactttg aattttttgc
     1081 tgcattgata gtataataca acaaaggcct atcatgcaaa agagctaaat ttttattttt
     1141 tatacctttt gaaccagctc gagcaggtat tatagctaaa gtcatttttt taccactcaa
     1201 tttaaattta tctaatattt cacgaattac tttttcatca agcattgtat aatttatttt
     1261 ctttattttt ctatgtctat aatggatttt tttaaaatct tctaaagtta aagcatccaa
     1321 atgtttttga taatcatttc tatgatattt taaagcagga aaatgccatt gaagtaattc
     1381 tgcttgtaag atttttatat gtttgggtat aatttgctgt tcagaataca attctttcac
     1441 agttttttca ggatcaatcc actgactttg ctttgaaacc attctttcta taaatacact
     1501 attgcacttt tgaattaaca attgatcccc tccatcgata aaaccacatt ctcctatatt
     1561 ttgaattaca attttatcta gtattaaaaa attaattctt ggaaatctaa cagcagtatt
     1621 ttttgatgcc atataaaaac tcttatataa tttttttgca tcatagtaat gatccacatc
     1681 tatttttata agccactcat cttgcggtat aaaactagct acatagttat aataactatg
     1741 aagtttattt tcttcgcttt gcggattttc aatttgcacc tcatggggat attttactgg
     1801 tataaacgaa gggtattgtt tgcaaaattc caaaataatt tcttcacttc catcagtaca
     1861 atcattatat cctataacac ctctttgtat ggcaggtaac atactttcaa gtgatactct
     1921 taaagtagtg gcttcatttt ttactcttat aaaagcccat ggatttaaag gagattttgt
     1981 atcttttgag tttggatcaa aatcaaaaaa acctttatgc ttttcattgt agattttttt
     2041 atttaagttt aaaaaatatt cattatcaaa ttttaatttt ttatcaattt taagcaatct
     2101 taaaaaagct ataattttat aaaacaaagt cattttttat ccatgaatat tttt
//
LOCUS       DAPIWJ010000130         2080 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.132, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000130 DAPIWJ010000000
VERSION     DAPIWJ010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2080)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2080)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2080
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.132"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..527)
                     /locus_tag="RJ259_001638"
     CDS             complement(<1..527)
                     /locus_tag="RJ259_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDV7367313.1"
                     /translation="MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTIKAT
                     IGATQSSKIGLTRFET"
     gene            complement(624..>2080)
                     /locus_tag="RJ259_001639"
     CDS             complement(624..>2080)
                     /locus_tag="RJ259_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7367314.1"
                     /translation="KVYKVVLFDCVAKDLEIQIAMIFDQQSILEYLSLYEMFISSHYY
                     LKYYETSILSLNELCIKSASVAIRNADITCFLPLLTHGQFLQNIPSMLESIPFQRILS
                     ERKNKFENAIVVSAGPSLAKQLPLLKAYQDKAVIFCADGALSMLEKEGIVPDYVTNLD
                     FTDLAMKFFQNKENLKQSIIALECATHPNVARSLKAENCMIILRNKALYQRFNLSDFG
                     YIDTGTHVSHFSYTLALALGFKNIIMIGQDLAFDEKGNSHSQGFSYGEQFSGEKTVPT
                     LKTQAYAGKGEVLTHITWNDYRIKLEYLFACNEQKAKFYNATEGGARINFTEELSFKE
                     CCEKLLTKEKPQFELPKSLTKNRSDKLLVKFKEKIQKDQDNAKRFLDDALALKQILEN
                     ILSKDFILPLEFLEKVYQNIENFNHSLDEDEFIQDETLRGAFAYRGKLISDVLKLHIQ
                     DKTHFITAYIKAYHEWLLYFMEKLEQKYKSLSKV"
BASE COUNT          682 a          338 c          293 g          767 t
ORIGIN      
        1 gtttcaaagc gtgttaaacc tatcttagaa gactgggttg ctcctatagt agcttttata
       61 gtttgatttg aactagcacc gatttgaaat tcttgattga taaaatttcc acttaaaagt
      121 tgtttaccgt taaatgaagt agtatttgcg atattatcaa gttcttccat taaacggttg
      181 atatctgctt gaagcatggt tcttgttttt aaactttgtc catcttgagc tgcttgagtt
      241 gccttagttt taattgtatc taagatttta agttgctcat ccatagcctt atcagcagtt
      301 tgtaagatac ctaaagcatc gttaccatta gatatagctt gacctaaagt attagcttga
      361 gatcttaaac tatctgctat cgccatccct gaagcatcat ctgctgcgga gttgattcta
      421 agacctgaac taagtctgct taaagaagca tctaaacttt tactatttaa atcagcgttt
      481 gctttagcat ttaaagctgc aacattggtg ttaatacgaa atcccatttt aaatcctttt
      541 aaaaaaattc aagctcatcc atgaacttgt taaataccat atcgtgcaat caaaaaaata
      601 ttttatactt tagcaataaa atttcatact tttgacaaag acttgtattt ttgttctaat
      661 ttttccataa aataaagcaa ccattcatgg taagctttga tataggctgt gatgaaatgc
      721 gttttatctt gtatatgaag ttttaataca tcggaaatta attttccacg ataagcaaag
      781 gctcctctta aagtttcatc ctgtataaac tcatcttcat ctaaagagtg attgaaattt
      841 tctatatttt gataaacttt ttctaaaaat tccaaaggta aaataaaatc tttactgagt
      901 atattttcta aaatttgttt taaagctaaa gcatcgtcta aaaatctttt agcattatct
      961 tgatcttttt gtattttttc tttgaattta actaggagtt tatcacttct atttttagtt
     1021 aaactttttg gaagttcaaa ttgaggtttt tcttttgtaa ggagtttttc acaacattct
     1081 ttaaaggaaa gttcttcagt gaaattaatc cttgctccac cttcagtagc attgtaaaac
     1141 tttgcttttt gttcattgca agcaaaaaga tattcaagtt ttatacgata atcattccag
     1201 gttatatgag ttaaaacttc tcctttgcct gcataagctt gggtttttaa ggtaggcaca
     1261 gttttttctc cgctaaattg ctcgccataa ctaaaacctt gtgagtgtga atttcctttt
     1321 tcatcaaaag ctaaatcttg tcctatcatg ataatatttt taaatcctaa agccaaagct
     1381 aaagtataag aaaaatgact tacatgagta cctgtatcga tatagccaaa gtcgctaaga
     1441 ttgaagcgtt gataaagagc tttatttctt aaaataatca tacaattttc agcctttaaa
     1501 ctacgtgcga cattaggatg tgtagcacac tcaagagcaa taatgctttg ttttaaattt
     1561 tctttatttt gaaaaaattt cattgctaga tcagtaaaat ctaaattcgt cacataatca
     1621 ggcacgatgc cttctttttc aagcatactt aaagccccat cagcacaaaa gatcactgct
     1681 ttatcttgat aagctttaag taaaggaagt tgtttagcta aactaggtcc tgcagaaact
     1741 actatagcat tttcaaattt gttttttctt tcacttaaga ttctttgaaa aggaatgctt
     1801 tcaagcatag aagggatgtt ttgtaaaaac tgtccatgtg ttagcaaagg taaaaaacaa
     1861 gtaatatctg cattccttat tgctacactt gcacttttaa tacaaagttc atttaaagat
     1921 aaaatagaag tttcatagta tttaagataa taatgcgagc taataaacat ttcatataaa
     1981 cttaaatact ctaaaatact ttgctgatca aaaatcatag caatttgaat ttctaaatcc
     2041 tttgcaacac agtcaaataa tacaacctta taaactttca
//
LOCUS       DAPIWJ010000131         2049 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.133, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000131 DAPIWJ010000000
VERSION     DAPIWJ010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2049
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.133"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..138
                     /locus_tag="RJ259_001640"
     CDS             <1..138
                     /locus_tag="RJ259_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDV7367315.1"
                     /translation="ESTIRDVDFAAESANFSKYNILAQSGSYAMSQANAVQQNVLKLL
                     Q"
     gene            complement(169..2043)
                     /locus_tag="RJ259_001641"
     CDS             complement(169..2043)
                     /locus_tag="RJ259_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7367316.1"
                     /translation="MNFEKNIKALSGSEYDNLRKKLQDLKELKHFSFTQGKDNLDINI
                     IKKRNLKKMYQDPIKELEKNLEYFKDFTRYPVLFFYGFGNGILYKILLQNQALKRIII
                     FEKELELIFLALNFIDFSKDLSLGRLIILHHDDINLPKMDKVFRLIGDLFYRSYNLHI
                     ANDFYEHYKEDILKLNKLNMQIIKNHNLMRGNDPKDAMQGIEQFVYNLPEMITHPSYK
                     ELLSKRKGISDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYV
                     CMLERDEIVAECFNNDFGELDKDIIFLIASLVHKKTISYLEKNQRKYILIIKGQPFAR
                     YLELDDYGYINAGMSVSHMAYELAENLGHKNIILIGQDLAYAKDGQTHSQGFIHANLH
                     NGDYERDLDRFSTTAYGGNGKVQSSEIWTLFRQIFENFIAFSKSKTYNCTEGGARIES
                     AIEKPFKELCEDLLENKKDKKFKKLQVLNTKEQVKLGLKIYQKIKKNMNLSLNFKKEC
                     KKVQKQIHNLTHGKNKLSLEQINQNIDKIKEKLSNKKYLFLQEILGPTLHHEQSILTP
                     LYLKNIKDESDKQNKLFAWVYAHEALMENIIELLEAQDKRLKIAILPLQDFLEKKKAL
                     "
BASE COUNT          660 a          292 c          285 g          812 t
ORIGIN      
        1 gaatcaacca taagagatgt agattttgca gctgaaagtg caaatttttc taaatataac
       61 atccttgcac agtcaggttc ttatgctatg agtcaggcta atgcagtgca gcaaaatgtt
      121 ttaaaacttc ttcaataatt tcttagatgc ttttatgcat ctaagctttt aaagtgcttt
      181 tttcttttct aagaagtctt gcaaaggtaa aatagcgatt ttaagtcttt tatcttgagc
      241 ttctaaaagt tctatgatat tttccatcaa agcttcgtgt gcataaaccc aagcaaaaag
      301 tttattttgt ttatcagatt catctttgat atttttaaga tataaaggcg ttaatatact
      361 ttgttcatga tgtaaagtag ggcctaaaat ttcttgcaaa aagagatatt ttttatttga
      421 aagtttttct ttgattttgt ctatattttg atttatttgt tcaagagaga gcttgttttt
      481 tccatgggta agattgtgaa tttgtttttg aactttttta cactcttttt taaaattcaa
      541 ggatagattc atattttttt tgattttttg atagattttt aatccgagtt ttacttgttc
      601 tttagtattt aaaacttgta attttttaaa ttttttatct tttttatttt cgagtaaatc
      661 ttcacaaagt tctttaaaag gtttttctat agcgctttct attctagcac ctccttcggt
      721 gcaattataa gttttacttt tgctaaaagc aatgaaattt tcaaaaattt gtctaaaaag
      781 tgtccaaatt tcagaacttt gaacttttcc atttcctcca taagctgtag tgctaaatct
      841 atctaagtcc ctttcatagt ctccattatg taaattagca tggataaaac cttgagagtg
      901 tgtttgtcca tctttggcat aagctaaatc ctgacctatg agaatgatgt ttttatgtcc
      961 taaattttca gccagttcgt aagccatatg agatacactc atacccgcgt taatatatcc
     1021 ataatcgtct agttccaagt atctagcaaa aggctggcct tttataatta aaatgtattt
     1081 tctttgattt ttttcaagat aagaaatggt ttttttatgc accaaggaag caattaaaaa
     1141 aataatatct ttatccaatt ccccaaaatc attattaaaa cattcagcta ctatttcatc
     1201 gcgttccaac atgcaaacat aatcaggctt tataccatgt ttagctaaaa taggataaga
     1261 agaatccgca caaaaaattg tagctttatt agcatatttt tttaacaaag gaagttgttt
     1321 agtaagagat ggtcctgtag aaacaatgat agctgtatca cttataccct ttcttttaga
     1381 aagtaattct ttataactag gatgggtaat catttcagga agattataaa caaattgttc
     1441 tataccttgc atggcatctt taggatcatt tccacgcata agattgtgat ttttgatgat
     1501 ttgcatattg agtttattaa gttttaaaat atcttcttta tagtgttcat aaaaatcatt
     1561 agcaatgtgt aggttataag aacgataaaa caaatcccct atcaaacgaa aaactttatc
     1621 cattttagga agattaatat catcatgatg taaaataatg agtcgcccta agcttaaatc
     1681 tttgctaaaa tctatgaaat ttaaagccaa aaagataagt tctaattctt tttcaaagat
     1741 gattattctt ttaagtgctt gattttgaag tagaatttta tataaaattc catttccaaa
     1801 accataaaaa aaaagcacag gatagcgtgt aaaatcttta aaatattcta aatttttttc
     1861 aagttctttg atgggatctt gatacatttt ttttaaattt ctttttttga tgatattgat
     1921 atcaagatta tcttttcctt gggtaaaact aaaatgttta agttctttaa gatcttgaag
     1981 ctttttgcgt agattatcat actcagagcc acttaaagct ttgatatttt tttcaaaatt
     2041 aatttcctt
//
LOCUS       DAPIWJ010000132         2040 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.134, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000132 DAPIWJ010000000
VERSION     DAPIWJ010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2040)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2040)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2040
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.134"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..119
                     /locus_tag="RJ259_001642"
     CDS             <1..119
                     /locus_tag="RJ259_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDV7367317.1"
                     /translation="PVAKITPAKWAKLIIESKIFDDLDKIFYKNALLIYKGG"
     gene            120..437
                     /locus_tag="RJ259_001643"
     CDS             120..437
                     /locus_tag="RJ259_001643"
                     /EC_number="5.1.3.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HDV7367318.1"
                     /translation="MQRYGQIIKIKKEKIEEYKELHTKPYEGVCEMIKECNIQNYSIC
                     LFGEYLFAYFEYIGADFEADMAKMARDESTQKWWKVTDPCQISLGYAGQKWLNMEEVF
                     HLD"
     gene            451..1889
                     /gene="aldA"
                     /locus_tag="RJ259_001644"
                     /pseudo
     CDS             451..1889
                     /gene="aldA"
                     /locus_tag="RJ259_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874345.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
BASE COUNT          756 a          246 c          421 g          617 t
ORIGIN      
        1 atccagtggc aaagataact ccagctaagt gggccaagct tattatagag agtaaaattt
       61 ttgatgatct agataaaata ttttacaaaa atgctttatt aatttataaa ggaggatgaa
      121 tgcaaagata cggtcaaatc ataaaaataa aaaaagaaaa aatagaagaa tacaaagagc
      181 ttcacacaaa gccttatgaa ggggtttgtg agatgattaa ggaatgcaat atacaaaatt
      241 attccatttg tttgtttggg gaatatttat ttgcatattt tgaatatata ggtgctgatt
      301 ttgaagcaga catggctaaa atggcaagag atgaaagcac acaaaaatgg tggaaagtaa
      361 cagatccttg tcaaatatct ttaggctatg caggacaaaa atggctaaat atggaagaag
      421 tatttcactt agactaaaaa aggagaaaaa atgacaactt atttaaatta tattgatgga
      481 aagtttatcc cacataatgg agaatttatc gaagttttaa atccagctac caaagaagtg
      541 atttcaagag tagctagcgc ttctttagaa gatactaaaa gagcgattga agcagccaaa
      601 aaagcacaaa aagtttggga ggctaaacca gcgattgaaa gagcaaatca tttaaaagaa
      661 atagctagtt aatacgcaaa aatgctaatt tcttaaccga agttttaatg caagagcaag
      721 gaaaaaccag agttttggct agcatagaga ttaattttac agcagattat atggattata
      781 cggccgaatg ggctagaaga tatgagggtg aaatcataca aagcgatagg gctaatgagc
      841 atatatattt atataaaagt gctattgggg taattggtgg aattttacct tggaattttc
      901 catttttctt aatcgcaagg aagatggcac ctgctttact aacaggaaat actattgtta
      961 taaagccaag cagtgaaact ccaaacaatg cttttgaatt tgcaaagctt gtttcgcaaa
     1021 gttctttacc aaaaggtgtt tttaacttag ttgcaggtaa aggcagtgta gtaggatatg
     1081 aattatcaag caatgaaaat ataggtatgg taagtcttac aggaagtgtt gaagcaggga
     1141 ctagagtaat ggaagctgca gctaaaaata ttatcaaagt ttctttagaa cttggtggaa
     1201 aggcgccagc tatagtgtgc aaagatgcgg atattgattt agcagtagaa gcgattaaag
     1261 caagtagaat ttgcaataac ggacaagttt gtaattgtgc tgaaagagct tatgtgcata
     1321 caagcgttta tgatgaattt gtagacaaat ttgtaaaagc catgagtaaa gtaagtgttg
     1381 gaaatacctt aaaaggtgat tttgatatgg gaccattggt caatcaagca ggagttgata
     1441 atgctttggc aatgcttcaa agagctacag ctaaaggagc gattgtagaa tgtggtggaa
     1501 aaatcactga tacaagtggg tattattttc ccgcaagcgt tcttactaat gttaaacacg
     1561 aagatgagat catgcaaaaa gaaatttttg ctccgatttt acctattgct aaatttgata
     1621 cacttgatga agttattgat atggcaaatg attgtgaata tggtcttaca agttctattt
     1681 atacacaaaa tttagatata gcaatgagag ctagcagaga aattaaattt ggtgaaactt
     1741 atattaatcg tgaaaatttt gaggctatgc aaggttttca tgcaggcttt agaaaaagtg
     1801 gcataggcgg agctgatgga aaacatggtc ttgaagaata tttagctacc catgtggtat
     1861 atttgcagta taatactaat aaacaatgat ttttatccta tctaaatttt tagataggag
     1921 ttattataat cttggaatca agtatgatgc tttataacta tggattaaac acttttttag
     1981 taatttctta aaatcaattt tggaattttt cattttgtct aaaatgagta agattatttt
//
LOCUS       DAPIWJ010000133         1977 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.135, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000133 DAPIWJ010000000
VERSION     DAPIWJ010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1977)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1977)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1977
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.135"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..803)
                     /locus_tag="RJ259_001645"
     CDS             complement(<1..803)
                     /locus_tag="RJ259_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HDV7367319.1"
                     /translation="MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDL
                     NERLAFMPIKKENGRYVLESFALGKLSFKDIQNFATLSGIAELYPKLDQGFIVDLLSH
                     RVNKVLMVKNEGFQKVDYELFKDLSVAILKHNVLNFFYKDKERQIKPYKLVNYKGIWY
                     LLGDENDKLKHFNLDKISKLHTKNENFIPDEKLEEQIQNDPNIWLGESKEVILKLDKN
                     AKEYFFRKEILSNYQIIDKDETSYTLSTQVSYEDEILHLVKQWIPYIKIL"
     gene            complement(800..1866)
                     /locus_tag="RJ259_001646"
                     /pseudo
     CDS             complement(800..1866)
                     /locus_tag="RJ259_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344000.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
BASE COUNT          622 a          297 c          283 g          775 t
ORIGIN      
        1 agaattttta tataaggaat ccactgttta accaaatgta aaatttcatc ttcataggaa
       61 acttgagtgc ttaaagtata gcttgtttca tctttatcaa tgatttgata attgcttagt
      121 atttcttttc taaaaaaata ttccttagca tttttatcaa gctttaaaat cacttctttg
      181 ctttctccaa gccagatatt aggatcattt tggatttgtt cctcaagttt ttcatcgggg
      241 ataaaatttt catttttagt gtgaagtttt gaaattttat ctaaattaaa atgttttaat
      301 ttatcgtttt catcccctaa aagataccaa attcccttgt aatttacgag tttgtaaggt
      361 ttgatttggc gttctttgtc cttatagaaa aaatttaata cattgtgttt gagtatagcc
      421 acactaagat ctttaaaaag ctcataatcc accttttgaa aaccttcatt ttttaccatc
      481 aaaactttat ttaccctatg gcttaaaaga tcaactataa agccttgatc gagttttgga
      541 taaagctcag caatgccact taaggtggcg aaattttgta tatctttaaa gcttaatttt
      601 cccaaagcaa agctttctaa aacatatctt ccattttctt ttttaatagg cataaaagca
      661 agtctttcgt taagatccct ttgtatggtt cttgtatcga cattaaactc ttgtgcaagc
      721 tcttgggcgc ttagactttc tccattgtta aattttgata aaatctgcac caagcgtata
      781 cttaatttgt cgtattcttt catgaaattt ccttgtgagt taaaatgctt tttaacaaac
      841 ttacgccttc tatgcctaaa atttcatttc taagtttttt gacttcattt aaacttgggg
      901 ctttcgcatg aacggcttca ttacggattt cttgaatgat agtaagactt tttgaaaaag
      961 gataattgat aaattgagtt aaactttttc ctaaatgaca ttggatattt tcatgtctga
     1021 gtagaaattt aatacttcca agattgggtt tttgggtaaa aaaatcttta agtataaaag
     1081 atttgccttg gacattataa gctaaatcat aaaggctagg atctttcata caagctttta
     1141 aaagaacttt ttggcaaaag cgtaaatttc atattctaag gttttagagt atttgactat
     1201 aatacttgta aaatcattta aaagatcgtt ttcgctttgc aaaagctcta attctgcatg
     1261 aatgatattg cttatgctat cagagtgtaa gagataaaaa atccttttgc caaaaacaaa
     1321 gcgtatgaaa ttttcttgca tggctaggta ttctttgctt ttatacacac ttagataatg
     1381 cttttcatct cctaaaaaat aagaacactc ttcttttaat ctcacaggca aaggataggt
     1441 gtaattattg ccatagatag cataggtgtg atcgtttggt gtgatgaaat tggctaaaaa
     1501 tttatctctt aaacgactaa aatcttccct gaccaattct cttaaatcac taataataaa
     1561 aaagtcttcc acttctaaat ttttttcttt ataataacta ggaatcaaac tttcatcaac
     1621 atttttagaa atttttacca ccttagcgac aaataaatta gcataatcgc ttaaaaagag
     1681 ttgcaagaaa ttttcttcat ttgtactttg gtaaatttct tctaaggaat tttgcttttc
     1741 ttgatcgttg agttttgatt tgattttgcc aaaggcaact tgggatttct cttgtaaaat
     1801 gcttaaatgt tgcttgatga catcttcttg atagtaggga ttataaagga ttaaaaggtg
     1861 gttcatgctt tgccttattt taggatttct ttaaaaggct tagatttatt atgagcttca
     1921 attaataaaa ttttacaagt gtcatctaga tatttttcta attttttatt atctatt
//
LOCUS       DAPIWJ010000134         1916 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.136, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000134 DAPIWJ010000000
VERSION     DAPIWJ010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1916)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1916)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1916
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.136"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            54..1913
                     /locus_tag="RJ259_001647"
     CDS             54..1913
                     /locus_tag="RJ259_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7367320.1"
                     /translation="MREELFLKNTQALFEVDELLACRLRSLKYLTFALIQDENGINFK
                     KDDIFLYENPNKELLENLTLFKTEYNKYPVLFFYGFGNGMFYKTLCKNKQHKHIIIFE
                     DNLEILTLAFHLFDFSEELKKEQLILFYTPNINTAQLTTLFTYEIIQKSVKIFNLFIH
                     SDFYQNFQNTQIQNTNAQLIEMIRFIVLNKGNDPHDSLVGIKHTLDNLPKMLNHGIFQ
                     EFLKERRAKVKNAIIVSTGPSLTKQLPLLKKYANKATIFCADSAYVILGKYGIKPDYV
                     CMLERDDIVSKCFDNDFGDFNKGILFILASVVHKEVLDFLEKDQRTYMLVHRPLNFAA
                     SLKLDEYGYLGVGHSVSNMIYELAGALRFENIIFIGQDLAYSEDGSSHPKEHIHGSQG
                     EEIRGEKYTLAYGGKGKVRTQLTWNLFRQAFEKDIFWAKEKLNITTYNCTEGGARIEG
                     TIEKPFLWACENLLDKDLDKPFDFPNFLDKKLAENKLEKTKKYLQKSILESKEFIKKT
                     QTQLQKLRYTLEKNDKDFQTLEKIKNDLLNLFKEFKKLKLFNELCQAIYFHNECEILK
                     FEVLNINKQKENLIDFLKIQHNWFIQGLGYLDAQNQTIEKSLENWNFDDIAKK"
BASE COUNT          767 a          257 c          279 g          613 t
ORIGIN      
        1 gaagaaaaac ttaaagaaag aaaattagat aaatggatgg aaagggtgag aaggtgagag
       61 aagagctttt tttaaaaaat actcaagctt tgtttgaggt cgatgagttg ttagcttgta
      121 gactgagatc acttaaatac ttaacttttg cacttatcca agatgaaaat ggaataaatt
      181 ttaaaaaaga tgatattttt ctttatgaaa atcccaataa agagcttttg gaaaacctta
      241 ctctgtttaa aaccgaatat aacaaatatc ctgttttgtt tttttatggc tttggaaatg
      301 gaatgtttta taaaacttta tgtaaaaaca aacaacataa acacattatc atttttgaag
      361 acaatcttga aattttaact ttagcttttc atttatttga ttttagcgaa gaattaaaaa
      421 aagaacaact aatacttttt tatactccaa atattaatac agcacaactc accacacttt
      481 ttacttatga aatcattcaa aaaagtgtaa aaatttttaa tcttttcatc catagtgatt
      541 tttatcaaaa tttccaaaat acacaaatac aaaatacaaa tgcccagctc atagaaatga
      601 tacgatttat cgttttaaac aaaggtaatg atccgcatga ttctttagtt ggaatcaaac
      661 ataccctaga caatctccct aaaatgttaa atcatggaat ttttcaagaa tttctcaaag
      721 aaagaagagc taaggttaaa aatgctatca ttgtttctac aggaccatct cttactaaac
      781 aacttccttt attaaaaaag tatgctaata aagctacgat tttttgtgca gatagtgctt
      841 atgttatcct tggaaaatac ggtataaagc ctgattatgt ttgcatgcta gaacgtgatg
      901 atatagtttc taaatgtttt gataatgatt ttggcgattt taacaaaggc atacttttta
      961 tacttgcttc tgtagttcat aaagaagtat tagatttttt agaaaaagat caaagaactt
     1021 atatgcttgt acatcgccct ttaaattttg cagctagttt aaaacttgat gaatatggat
     1081 atcttggagt aggacacagt gtttcaaata tgatctatga actagccgga gccttaagat
     1141 ttgaaaatat catttttata ggacaagatt tagcttatag cgaggatgga agttcacatc
     1201 ctaaagagca tatacatgga agtcaaggtg aagaaatcag aggagaaaaa tatacactag
     1261 cttatggagg aaaaggcaaa gtaagaactc aactcacttg gaatttattt cgtcaagctt
     1321 ttgaaaaaga tatattttgg gcaaaagaaa aactcaatat caccacctac aactgcaccg
     1381 aaggtggagc aagaatagaa ggaactatag aaaaaccttt tttatgggct tgtgagaatt
     1441 tacttgataa agatttagat aaaccttttg attttccaaa ttttctagat aaaaaactag
     1501 ccgaaaataa actagaaaaa acaaaaaaat atctccaaaa aagcatttta gaatctaaag
     1561 aatttataaa aaaaactcaa actcagcttc aaaagcttag atacacttta gaaaaaaatg
     1621 acaaagattt tcaaactctt gaaaaaatca aaaatgatct tttaaatctt tttaaagaat
     1681 ttaaaaaact caagcttttt aatgaacttt gtcaagctat ttattttcat aacgaatgcg
     1741 aaattttaaa atttgaagtt ttaaacataa ataagcaaaa agaaaattta atagactttt
     1801 tgaaaataca acacaattgg tttatccaag gtttaggata ccttgatgct caaaaccaaa
     1861 ccatagaaaa aagtttagaa aattggaatt ttgacgatat agctaaaaaa taatta
//
LOCUS       DAPIWJ010000135         1848 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.137, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000135 DAPIWJ010000000
VERSION     DAPIWJ010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1848)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1848)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1848
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.137"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            31..603
                     /locus_tag="RJ259_001648"
     CDS             31..603
                     /locus_tag="RJ259_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HDV7367321.1"
                     /translation="MKKVLLSSLVAVSLLSTGLFAKEYTLDKAHTDVGFKIKHLQISN
                     VKGNFKDYSAVIDFDPASAEFKKLDVTIKIASVNTENQTRDNHLQQDDFFKAKKYPDM
                     TFTMKKYEKIDNEKGKMTGTLTIAGVSKDIVLDAEIGGVAKGKDGKEKIGFSLNGKIK
                     RSDFKFATSTSTITLSDDINLNIEVEANEK"
     gene            complement(608..1564)
                     /locus_tag="RJ259_001649"
     CDS             complement(608..1564)
                     /locus_tag="RJ259_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367322.1"
                     /translation="MFLLDFLISLSFIFEISALVLSFYFKNSKIFFLTLVLLGAKLPY
                     FYTSFFQANLFVALFLPMIFTLFCVGKHHVLILNKKNIASITTLIFIGILSIILPRNT
                     TFNSAGLEFHFIALDFFKPVSELGFLFFLVGLILIFIKTFKTKEYYLLIAFFTAYFQF
                     LFQEGAGIRYFEFASLVFCFYLLNHAYRLAFFDTLTKLPNEKSLTRFTKGKNNYIIAL
                     LHFNELKDTKESYTKLILKQIAKILKRFRAKIFIVENDFILIFNDKNQALNHLAFLES
                     TLKNTEFNLENENFKPDFKLIWQESEENLDKNLQSLRARLLD"
     gene            complement(1626..1835)
                     /locus_tag="RJ259_001650"
     CDS             complement(1626..1835)
                     /locus_tag="RJ259_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDV7367323.1"
                     /translation="MTKKSKRDMAYELDIDVSTLYNWRKYKPNLYRIVMLGFKFDELL
                     DNSKKTHEELLHIEQTIQDEIAKFK"
BASE COUNT          740 a          216 c          260 g          632 t
ORIGIN      
        1 tattgaaaat tactataaaa aaggaaaaaa atgaaaaaag ttttattgag ttcattggtt
       61 gcggtgtctt tgttaagcac aggtttgttt gctaaagaat atactttaga taaagcacat
      121 acagatgtag gttttaaaat caaacattta caaattagca atgtaaaagg aaatttcaaa
      181 gattattctg cggtgattga ttttgatcct gcgagtgctg aatttaaaaa gcttgatgta
      241 actataaaaa tcgcatctgt aaatacagaa aatcaaacaa gagataatca cttacaacaa
      301 gatgattttt tcaaagcaaa aaaatatcct gatatgactt ttacaatgaa aaaatatgaa
      361 aaaatcgata atgaaaaagg caaaatgaca ggaactttaa ctatagctgg agtttctaaa
      421 gatatcgttt tagatgctga aatcggcggt gtagctaaag gcaaagatgg aaaagaaaaa
      481 ataggatttt ctttaaatgg aaaaatcaaa cgctctgatt ttaaatttgc aacaagtact
      541 tcaactatta ctttaagtga tgatattaat ttaaatatcg aagttgaagc gaacgaaaaa
      601 taatttttta gtctaagagt cttgctctta gactttgtaa atttttatcc aaattttctt
      661 cactttcttg ccaaatcaat ttaaaatccg gtttaaaatt ttcattttct aaattaaatt
      721 ccgtgttttt caaggtggat tctaaaaaag caagatgatt taaagcttga tttttatcat
      781 taaaaattaa aataaaatca ttttctacga taaaaatttt tgctctaaag cgttttaaaa
      841 tttttgcaat ttgttttaaa atgagtttgg tatagctttc tttggtatct tttagttcat
      901 taaaatgaag caaggcaatg atatagttgt tttttccttt tgtaaagcgt gtaaggcttt
      961 tttcattggg tagctttgtt aaggtgtcaa aaaaagctaa cctataagcg tgatttaaaa
     1021 gataaaaaca aaaaaccaaa cttgcaaatt caaaatatct tattcctgct ccttcttgga
     1081 ataaaaattg aaaatacgca gtaaaaaatg cgataagaag ataatattct ttagttttaa
     1141 aggttttgat aaaaatgagt attaagccga ctaaaaaaaa taaaaatcct aattcactca
     1201 caggtttaaa aaaatctaat gcaataaaat gaaattctaa accagcacta ttaaaagtag
     1261 tatttctagg taaaatgata cttaaaatgc ctataaaaat aagggttgta attgaagcga
     1321 tatttttttt atttaaaatt aaaacatgat gttttccaac gcaaaataga gtaaaaatca
     1381 taggtaaaaa taaagctaca aataaattag cttgaaaaaa acttgtataa aaataaggca
     1441 acttggctcc taatagcact aaagttaaaa agaaaatttt tgaattttta aagtaaaagg
     1501 ataatacaag tgctgaaatt tcaaaaataa aactcaatga tattaaaaaa tctaataaaa
     1561 acattatcaa atccttgatt ttaataaaag tgataattgt atagaaaaaa gcttaaaagc
     1621 ggattttatt taaatttagc aatttcatct tgtatggttt gttctatatg gagtaattct
     1681 tcatgagttt ttttgctatt atctaaaagt tcatcaaatt taaagccaag cataacaata
     1741 cgatataaat tgggtttata ttttctccaa ttatataaag tgctaacatc aatgtctagt
     1801 tcatatgcca tatcacgctt gctctttttt gtcatttttt accttaaa
//
LOCUS       DAPIWJ010000136         1695 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.138, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000136 DAPIWJ010000000
VERSION     DAPIWJ010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1695)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1695)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1695
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.138"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..1523
                     /locus_tag="RJ259_001651"
     CDS             <1..1523
                     /locus_tag="RJ259_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HDV7367324.1"
                     /translation="KFIPEFINFLDQDNYKENFIKVKEAISKGRVYQINLTQNFKFHS
                     KMDSFELFKLLLSRQDTEFKAFIKDETREILSFSPELFFKTKKRKIFTKPMKGTIKRD
                     KDPIKDEENKIFLQNDTKNLSENVMICDLLRNDLSKIITKKSLKTKLFEIQSHPTLHQ
                     MTSSVQGKLKKNISLYQIFKALFPCGSITGAPKLESIKFIEELEQRDRGIYCGTIGLI
                     HKNKNKCSVAIRTLEKQDEIYTYSTGSGLVWDSKFKDEFEELKLKSAILNPCDFHLFE
                     TMYFKNSQILFLKEHLLRLINSALKFNFNTHKLFKDFYNVLNQKSSHKKYQNFTLFKL
                     DEKIFHKKHSLFYNFPLPFKNPHKEGILKLILYKDGRYEFQQSALKQNSNDILLLSDD
                     KINSKSDNLYHKSSLRTFYNQHSYKWQQNLCYDIAFFNEKDELCEGSRTNLILEKNSQ
                     FYTPQIQSGMLNGVYRNFLINLGLIKEKALFKQDLFEAENIYCINSVRGLKKVKLQ"
     gene            1520..>1695
                     /locus_tag="RJ259_001652"
     CDS             1520..>1695
                     /locus_tag="RJ259_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HDV7367325.1"
                     /translation="MKKILFIDNYDSFSYTIIYYLKELGFECKVIKNDAFKKAKELEK
                     FDFTHLIISPGPHSP"
BASE COUNT          682 a          247 c          204 g          562 t
ORIGIN      
        1 aaaaatttat tcctgaattt ataaattttt tagatcaaga taattacaaa gaaaatttca
       61 tcaaggttaa agaggcaatc tccaaaggaa gagtttatca aatcaacctc actcaaaatt
      121 ttaaatttca tagcaaaatg gattcttttg aactttttaa acttttactt tctagacaag
      181 atactgaatt taaagctttt ataaaagatg aaacaagaga aattttgtcc ttctcacctg
      241 aacttttctt caagaccaaa aaaagaaaaa tatttacaaa acctatgaaa ggcacaatta
      301 agcgtgataa agatcctata aaagatgaag aaaataaaat tttcttgcaa aatgatacaa
      361 aaaatctgag tgaaaatgtt atgatttgtg atcttttacg caacgatctt tcaaaaatca
      421 tcacaaaaaa aagcttaaaa accaaacttt ttgaaattca aagtcaccct actttacatc
      481 aaatgacttc aagcgtacaa ggaaaactta aaaaaaatat ttctttatat caaattttta
      541 aagctctctt tccttgtggt tctattacag gtgctccaaa gcttgaaagc attaaattta
      601 ttgaagaatt agaacaaaga gatcgtggta tttactgcgg aactataggt ttaatacaca
      661 aaaataaaaa taaatgtagc gtagccatac gcaccttaga aaaacaagat gaaatttata
      721 cttatagcac gggtagcggc ttggtttggg actcaaaatt taaagatgaa tttgaagaat
      781 taaaacttaa aagtgcaatc ttaaatcctt gtgattttca tctttttgaa accatgtatt
      841 ttaaaaattc tcaaatttta tttttaaaag aacatttatt aaggcttata aattcagctc
      901 ttaaatttaa ttttaacact cacaagctct ttaaagattt ttataatgtt ttaaatcaaa
      961 aaagttctca taaaaaatat caaaatttta cactttttaa actcgatgaa aaaattttcc
     1021 acaaaaaaca ctctttattt tataattttc ccctaccctt taaaaatcca cataaagaag
     1081 gaattttaaa gcttatttta tacaaagacg gaagatacga atttcaacaa agtgccttaa
     1141 agcaaaattc aaacgatatt ttgcttttaa gtgatgataa aattaactca aaaagtgaca
     1201 atctctatca caaaagctct ttgcgtactt tttataatca acactcatac aaatggcagc
     1261 aaaacttgtg ttatgacata gcttttttta acgaaaaaga tgaactttgc gaaggctcaa
     1321 gaaccaatct catcttagaa aaaaactctc aattttatac tccacaaatt caaagcggta
     1381 tgttaaatgg agtatataga aatttcttaa tcaatcttgg tttgataaaa gaaaaagcat
     1441 tatttaaaca agatttattt gaagcagaaa atatttattg tattaattcc gtgcgtggtt
     1501 taaaaaaggt aaaattacaa tgaagaaaat tttatttata gataattatg attcttttag
     1561 ttataccatc atctattatc ttaaagaact tggttttgaa tgtaaagtga taaaaaatga
     1621 tgcctttaaa aaagctaaag aattagaaaa atttgatttc actcatctta tcatctctcc
     1681 tggccctcat tctcc
//
LOCUS       DAPIWJ010000137         1523 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.139, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000137 DAPIWJ010000000
VERSION     DAPIWJ010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1523)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1523)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.139"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..1486)
                     /locus_tag="RJ259_001653"
     CDS             complement(<1..1486)
                     /locus_tag="RJ259_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HDV7367326.1"
                     /translation="MNFRSLNLSTKLILSVAIGIVLGIVVIVLTVSIYTSKSMEKEAK
                     DSIFLSSKRYVNYMEGILNEEVVLTKAMATSLNEIFSKNDQVNAGIIESLLRNTFDSS
                     GYAAYAFLYLQDSSILTHVESLDKNFKNSDGKSVTMIFFDETTGKAGGIKSIHAPSNF
                     SQLPIIEKIKKNARYGDLDTIFLGSPSRLNYDGTEFLGINLGMPLFNKEGKFIGIVGF
                     TFDFLEISETILDPKLDFYKDDLRFLITDQGVIVIHKNKDAILKTLPEINQDASVQLI
                     IDAVKNHKDLIIDNYVDLSGNLSYAGVASFSTLGDSSHWSMVVTAPKKSIFAPLYELN
                     FILISIAIIVLIAILIILYFCVKNIVGSKLPIIVNSLQNFFDFINHKTKNVSTIEVKS
                     NDELGQMGKIINENILATKRGLEQDNQAVKESVETVHVVEGGNLTARITANPRNPQLI
                     ELKNVLNRLLDALQARVGSDMNEIQRVFNSYKSLDFTTEVKDANG"
BASE COUNT          525 a          242 c          183 g          573 t
ORIGIN      
        1 ctccattggc atcttttact tcagtagtaa agtcaagaga tttataacta ttaaatactc
       61 tttgaatttc attcatatca gaacctactc tagcttgtaa agcatcaaga agtctattta
      121 gaacattttt taattctatt aattgtgggt ttcttggatt agcagtaatt cttgctgtta
      181 aattaccacc ttctactaca tgaacagttt caactgattc tttaacggct tgattgtctt
      241 gttctaagcc tcttttagta gcaagaatgt tttcattgat aattttaccc atttgcccca
      301 attcatcatt gctttttact tctatagtag aaacattttt tgttttatgg ttgataaagt
      361 caaagaaatt ttgcagggaa ttaactataa ttggaagttt agatcctact atatttttta
      421 cacaaaaata cagaataatt aaaatagcaa ttaatacaat aattgcaata ctaattagaa
      481 taaaattcaa ttcatataaa ggcgcaaaaa tagatttttt aggtgctgtt acaaccatgc
      541 tccaatgact cgaatctcct aaggtactaa atgaagcaac tcctgcatag cttaaatttc
      601 cgcttaagtc aacataatta tcaataatca aatctttatg atttttaaca gcatcaataa
      661 ttaattgcac ggatgcatct tgattaattt caggtaaagt ttttaaaata gcatctttgt
      721 tcttatgaat aacaataaca ccttgatctg ttattaaaaa tcttaaatca tctttataaa
      781 aatctaactt cggatcaagt attgtttcag atatttctaa aaaatcaaaa gtaaatccaa
      841 ctataccgat aaattttcct tctttattaa ataagggcat tcctaagtta atacctaaaa
      901 attctgttcc atcataatta agtcttgatg gagatcctaa aaatatagta tcaagatcac
      961 catatcttgc atttttttta attttttcta taataggtag ttgtgaaaaa ttgctcggag
     1021 cgtgtatgct tttaataccg cctgccttcc ctgtggtttc atcaaaaaaa atcattgtta
     1081 cacttttgcc atcagagttt ttaaaatttt tatctaaaga ttcaacatga gttagtatag
     1141 aagaatcctg taaataaaga aaagcataag ctgcataacc gctactatca aatgtatttc
     1201 ttaaaagact ttctattata ccagcgttca cttgatcatt ttttgaaaat atttcattta
     1261 atgaagtggc cattgctttt gttaatacaa cctcttcatt taaaatacct tccatgtaat
     1321 tgacatatct ttttgaagac aaaaatattg aatctttagc ttctttttcc atacttttag
     1381 aagtatatat agatacggtt aaaacaatta caactatgcc taagactatt cctattgcta
     1441 cagataaaat aagcttagta cttaaattta gagaacgaaa attcatattt ttcctttttg
     1501 tgagctttta aatttttaca ata
//
LOCUS       DAPIWJ010000138         1476 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.140, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000138 DAPIWJ010000000
VERSION     DAPIWJ010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1476
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.140"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..>1476
                     /locus_tag="RJ259_001654"
     CDS             <1..>1476
                     /locus_tag="RJ259_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HDV7367327.1"
                     /translation="TIDLSEELCSGKIYLVDIEEERVDIQLLILFDMKDMFEYLSLYE
                     MFVNNVYYKKFYEDVWHKADELCEKNIKVVIRNLNSSLCIGFECYSHLLQNIPSMLES
                     IPFQRILSERKNKFENAIVVSAGPSLAKQLPLLKAYQDKAVIFCADGALSMLEKEGII
                     PDYVTNLDFTDLAMKFFQNKENKTSLNMLSCATHPSLVHFLDNKSVVLRDDPLYQRFN
                     LNDFGYIDTGTHVSHFSYTLALALGFKNIIMIGQDLAFDEEGNSHSKGFDFGEKFSGE
                     ENIDKLKVTAYAGKGEVLTHITWNDYRIKLEYLFACNSKEAKFYNATEGGARINFTEE
                     LSFKECCEKLLTKEKPQFELPKSLTKNRSDKLLVKFKEKIQKDQDNAKRFLDDALALK
                     QILENILSKDFILPLEFLEKVYQNIENFNHSLDEDEFIQDGILKAVIYERGLKISLVY
                     KENIVDNASFISAYIKAYHEWLLYFMEKLEQRINIIIDSFKE"
BASE COUNT          546 a          173 c          249 g          508 t
ORIGIN      
        1 acgatagatt tgagtgaaga gctttgtagt ggaaaaattt atcttgtgga tatcgaagaa
       61 gaaagagtag atattcaact gcttatactt tttgatatga aagatatgtt tgagtactta
      121 agtttgtatg aaatgtttgt gaataatgtt tattataaaa agttttatga ggatgtctgg
      181 cataaagcag atgagctttg cgagaaaaat ataaaagttg tgataagaaa tttaaattct
      241 agtttatgta tcggttttga gtgttattct catcttttac aaaacatccc ttctatgctt
      301 gaaagcattc cttttcaaag aatcttaagt gaaagaaaaa acaaatttga aaatgctata
      361 gtagtttctg caggacctag tttagctaaa caacttcctt tacttaaagc ttatcaagat
      421 aaagcagtga tcttttgtgc tgatggggct ttaagcatgc ttgaaaaaga aggcataata
      481 cctgattatg ttacgaattt agattttact gatctagcaa tgaaattttt tcaaaataaa
      541 gaaaataaaa cttctttaaa tatgctttca tgtgctactc atcctagttt ggttcatttt
      601 ttagataata aaagtgtagt tttaagagat gatcctttat accaacgctt caatcttaat
      661 gactttggct atatcgatac aggcactcat gtaagtcatt tttcttatac cttagctttg
      721 gctttaggat ttaaaaatat catcatgata ggacaagatt tagcctttga tgaagaagga
      781 aattcacact caaaaggttt tgattttgga gagaaattta gtggtgaaga aaatatagat
      841 aaacttaaag tcaccgccta tgcaggcaaa ggtgaagttt taactcatat aacctggaat
      901 gattatcgta taaaacttga atatcttttt gcttgcaaca gtaaagaagc taaattttac
      961 aatgctactg aaggtggagc aaggattaat tttactgaag aactttcctt taaagaatgt
     1021 tgtgaaaaac tccttacaaa agaaaaacct caatttgaac ttcccaaaag tttaactaaa
     1081 aatagaagtg ataaactcct agttaaattc aaagaaaaaa tacaaaaaga tcaagataat
     1141 gctaaaagat ttttagacga tgctttagct ttaaaacaaa ttttagaaaa tatactcagt
     1201 aaagatttta ttttaccttt ggaattttta gaaaaagttt atcaaaatat agaaaatttc
     1261 aatcactctt tagatgaaga tgagtttata caggatggta ttttaaaagc agtgatttat
     1321 gagcgaggac ttaagataag tttagtttat aaagaaaata ttgtagataa tgctagtttt
     1381 atcagtgctt atattaaagc ttaccatgaa tggttgcttt attttatgga aaaattagag
     1441 caaagaataa atattatcat cgattctttt aaggaa
//
LOCUS       DAPIWJ010000139         1457 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.141, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000139 DAPIWJ010000000
VERSION     DAPIWJ010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1457)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1457)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1457
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.141"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(8..745)
                     /locus_tag="RJ259_001655"
     CDS             complement(8..745)
                     /locus_tag="RJ259_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7367328.1"
                     /translation="MIKAFSLLEFVFIILILGIVFNLGSLYLKKDNLLEGAIQILNDI
                     QYTQSLAMMQEGIRVDELTIAKREWFKSKWQIYFIKSAATGYDQTYTIFLDKNGDGNA
                     NLGKTEINIDREIAVDVINHNKLMNSGQSGVISKDDEKTTQRFNLTKRFGIEKVEFKG
                     SCSGFTRLVFDEMGRVYSPLKNANYAYEKTLAKNNSDCIIRLLSKKHALCIVIDTLSG
                     YVYIPDFKTLKSQFVNIKNKNYECSKI"
     gene            complement(738..>1457)
                     /locus_tag="RJ259_001656"
     CDS             complement(738..>1457)
                     /locus_tag="RJ259_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367329.1"
                     /translation="GIYKRNAILFTLSLVLFGASISFYGFDTGGRPRGYFLDTLGIFA
                     ACFSPLVFVYFFYTIYRLTFQKYKNLLWFLMSVTFVFCLLLSLRQKLFLDDFLPFCVI
                     CTPLLIKTLMQSYRVRLPVFRLRYKIFIECSIIFLIFCYFLIVANQLLYYFINNPNRH
                     FANNYHFAKELALELKKQDVLELATAPSLQKRLRFYGIKNSNKFYLKALKQADKHDMD
                     KKIVKVKLGKYEKVYQILNYD"
BASE COUNT          544 a          235 c          164 g          514 t
ORIGIN      
        1 atgggggcta tattttagag cactcgtaat ttttattttt tatattaaca aattgacttt
       61 taagtgtttt aaaatctgga atataaacat aaccgctaag cgtatctata acgatacaaa
      121 gagcatgctt ttttgataac aaacgtataa tgcaatctga attattcttt gctaaagttt
      181 tttcataggc ataattggca ttttttaacg gagaatacac tctgcccatt tcatcaaata
      241 ctaatctagt aaatcctgaa caagatcctt tgaattcaac cttttctatt ccaaatcttt
      301 ttgtaagatt aaatctttgt gtagtttttt catcatcttt actaataact ccactttgac
      361 ctgaattcat taatttgtta tgattgatta catcaacagc aatttctcta tctatattga
      421 tttcagtttt acctaaatta gcatttccat cgccattttt atccaagaaa atagtatatg
      481 tttgatcata acctgtggca gctgatttta taaaataaat ctgccattta cttttaaacc
      541 actctctttt tgcaatagtc aactcatcaa ctcttatacc ttcttgcatc atggctaaac
      601 tttgggtata ttggatatca ttaagaattt gtatcgcacc ttctagtaga ttgtcttttt
      661 ttaagtaaag actgcctaaa ttaaaaacta tacctaaaat gagaattata aacacaaatt
      721 ccaacaaact gaaagcttta atcatagttt aaaatctgat atactttttc atattttcca
      781 agttttactt taacaatttt tttgtccata tcatgcttat cggcttgttt taaagctttt
      841 aaataaaact tattgctatt ttttattcca taaaatcgca atcttttttg caaacttggg
      901 gctgttgcaa gctctaaaac atcttgtttt tttaattcta gtgccaattc tttagcaaaa
      961 tgataattat tggcaaaatg acgatttgga ttgtttataa aataatacaa taattgatta
     1021 gcgacgatta aaaagtaaca aaatatcaaa aaaattatag aacattctat aaagatttta
     1081 taccttaatc gaaaaactgg taatctcacc ctataacttt gcattaaagt ttttataagc
     1141 aaaggagtgc aaataacaca aaaaggcaaa aaatcatcta aaaaaagttt ttgtcttaaa
     1201 gaaagcaaca aacaaaatac aaatgttacg ctcattaaaa accataataa atttttatat
     1261 ttttgaaaag tcaaacgata aatagtataa aaaaaataca caaaaaccaa aggagaaaaa
     1321 catgcagcaa aaattcctaa ggtatctaaa aaataacctc ttggacgacc acctgtatca
     1381 aaaccataaa aactgatact cgctccaaac aaaacaagag ataaggtaaa taaaatagca
     1441 tttcttttat aaatccc
//
LOCUS       DAPIWJ010000140         1446 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.142, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000140 DAPIWJ010000000
VERSION     DAPIWJ010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1446)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1446)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1446
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.142"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..517)
                     /locus_tag="RJ259_001657"
     CDS             complement(<1..517)
                     /locus_tag="RJ259_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HDV7367330.1"
                     /translation="MIFFYYFLTWTAFLFCAVFILLLSFLKSKYKISLKSRFFLYKNL
                     HQEKADVHFHACSYGEVRSIKALVLKFDSRITTITQTGFECAKEFCKKVNYLAFENFL
                     PFWLKPCKVLVIFEAEYWLMLVFMARIYKAKIILLNARISDKSYHSYQRFSFFYKKIF
                     SYIDEVFAQSDL"
     gene            complement(514..1230)
                     /locus_tag="RJ259_001658"
     CDS             complement(514..1230)
                     /locus_tag="RJ259_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HDV7367331.1"
                     /translation="MNKYLEQLVLLSKIDQEIDSYEPKIDSINKTLKDAELKIEKINA
                     DLEKIDEEIKDIENQKIQNNAHISEFSAKIKDLSKKSGVVKTEKEANALKIEEDIAKE
                     QLDAANDEIVRLDKILENKETYKKELEEEKIKQEQNINEIRVSIKSEMEVLEKDRMSV
                     YDKKTKLVSEMNQKVLSFYEKIRKWAKNTAVVPVKKQACYGCFMKIYDKTYLSVVKGE
                     EIVTCPHCGRILYKEQEEQN"
     gene            complement(1240..>1446)
                     /locus_tag="RJ259_001659"
     CDS             complement(1240..>1446)
                     /locus_tag="RJ259_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HDV7367332.1"
                     /translation="ISKVDADCFLSGDFKYHQALEALSNQISLIDLGHFESERYFSQC
                     LAKDLKNLPLQVIITVSKNPFQYF"
BASE COUNT          498 a          239 c          150 g          559 t
ORIGIN      
        1 ctaaatcact ttgagcaaaa acttcatcaa tataagaaaa aattttttta taaaaaaaag
       61 aaaatctttg ataagaatga taagacttat cagatattct cgcattaagc aaaataatct
      121 tagccttata aatacgtgcc ataaaaacaa gcataagcca atattctgct tcaaaaatta
      181 ccaaaacctt acaaggctta agccaaaaag gcaaaaaatt ttcaaaagca agataattta
      241 cctttttaca aaattctttt gcacattcaa aacctgtttg agtaatagta gttattcttg
      301 aatcaaattt caaaaccaaa gctttaatac ttcttacctc cccgtaagaa caagcatgaa
      361 aatgtacatc agctttttct tgatgtaaat ttttataaag aaaaaatcga gattttaaac
      421 taattttgta tttggatttt aaaaaagaaa gtaaaagaat aaagacggca caaaataaaa
      481 atgccgtcca agttaaaaaa taataaaaaa agatcaattt tgttcttctt gctctttata
      541 aagaattctt ccgcaatgag gacaagttac aatctcttca ccttttacaa cggacagata
      601 agtcttatcg taaattttca taaaacatcc atagcatgct tgttttttaa caggaactac
      661 agcagtattc ttcgcccatt tgcgaatttt ctcataaaaa cttaaaactt tttgattcat
      721 ctcactcaca agtttagttt ttttatcata aacactcatt ctatcttttt caagaacttc
      781 catttcagat ttaatgctta ctctaatctc gttaatattt tgctcttgtt tgattttttc
      841 ttcttcaagt tcttttttat aagtttcttt attctctaaa attttatcta gtcttacaat
      901 ctcatcattt gcagcgtcta attgctcttt tgcaatatct tcttcaattt ttaaagcatt
      961 agcttctttt tctgttttta ccacaccact ttttttagaa agatctttaa tttttgctga
     1021 aaactcggaa atatgagcat tattttgtat tttttgattt tctatatctt tgatttcttc
     1081 atcgattttt tctaaatctg cgttgatttt ttctattttt aactcagcat cttttaaagt
     1141 cttattaata ctgtctattt ttggttcata actatcaatt tcttgatcta tttttgataa
     1201 aagcactaat tgttcgagat atttattcat ttattttcct taaaaatatt gaaatggatt
     1261 ttttgaaact gttattataa cttgtagcgg caaatttttc aagtcttttg ctaaacattg
     1321 agaaaaatat ctctcacttt caaaatgacc caaatcaata agactgattt gattactaag
     1381 cgcctctaaa gcttgatgat atttaaaatc tccacttaaa aaacaatccg catctacttt
     1441 agaaat
//
LOCUS       DAPIWJ010000141         1399 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.143, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000141 DAPIWJ010000000
VERSION     DAPIWJ010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1399)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1399)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1399
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.143"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            127..1191
                     /locus_tag="RJ259_001660"
     CDS             127..1191
                     /locus_tag="RJ259_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDV7367333.1"
                     /translation="MKYPLDCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPQALAEV
                     NFALTKGVKNIDELDALAKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEEL
                     IVEVLASITGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSK
                     GVKLPEFMSKEELKKFLDAIENADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDIS
                     EENDLYIIRIRAKGNKYRVVMIKKELIYDLLKNVSINYISKDALLFVNKKGTPLTQSY
                     VSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYT
                     HFDNDKLKLAAQVAKELSDS"
     gene            1181..>1399
                     /locus_tag="RJ259_001661"
     CDS             1181..>1399
                     /locus_tag="RJ259_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aminodeoxychorismate synthase
                     component I/aminotransferase"
                     /protein_id="HDV7367334.1"
                     /translation="MTLENYAVFGKYFYHDLKHTLKAFNHKESKKCFKFIEKYKNDFY
                     ILMLTDYELYRYFQDKNFTSKKAYLSVFA"
BASE COUNT          549 a          179 c          202 g          469 t
ORIGIN      
        1 attttaatct ttttgccttg catataaaaa caaacttttt cctaaaaaag ctttttttta
       61 ctaagttaat actaaaatac cttttctagt taaaaagcta aaattttaga tttaggaaaa
      121 gtttttatga aatacccttt agattgtgaa gaaaattttg aaaaatcatt cttattttgg
      181 ttagcaaaat atgtaaaatt taaactcaac tcactatcta acaaagagtt aaaaaatcca
      241 caagctttag cagaagttaa ttttgctctt acaaaaggtg taaaaaatat tgatgaactt
      301 gacgctctag caaaaaaagc aagaaatgct ggtttaagtg gagttaatac ttattttaat
      361 cctttaaaaa aagtatttga atatttaaat ttttataagc tttactcttt aaaacagatt
      421 gatgaagaac ttattgtaga agttttagca agtataacag gtgctttatc agatgcaagc
      481 aaaaaaaatt accgtattgc tgtgattaat ttttttgatt ttttagacaa gcaaaatgaa
      541 gaagatgaaa aagcacatat tttcgatatc aatcttaaaa actgggcagg tatagcaggt
      601 tctaaagggg taaaattacc tgaatttatg agtaaagaag agcttaaaaa atttcttgat
      661 gctattgaaa atgcagattt taaaaacaat accatacgca ataaacttat tattaaaatc
      721 atcattttta caggcatacg ggtaagtgaa gctatcaata tcaaaatggg tgatattagc
      781 gaagaaaacg atctttatat cataagaata agagctaaag gcaataaata tcgtgttgta
      841 atgataaaaa aagaacttat ttacgatttg cttaaaaatg taagtattaa ttatataagt
      901 aaagacgccc tactttttgt caataaaaaa ggcactccac tgactcaatc ttatgtcagt
      961 cgcatagtag aacagctttt atttcgcgca ggaattcgca aacaaaaaaa tggtgctcat
     1021 atgttgcgtc atacttttgc caccctgctt tataaaaagc aaaaagattt agttttagtt
     1081 caagaagctt tagggcatgc aagtttaaat acctcaagaa tttacactca ttttgataat
     1141 gataaattaa aacttgccgc acaggttgca aaggaattaa gtgactcttg aaaactatgc
     1201 tgtttttggt aaatattttt accatgattt aaaacacact ttaaaagcct ttaaccacaa
     1261 agaaagtaaa aaatgcttta aatttataga gaaatataaa aatgattttt atattttaat
     1321 gcttactgat tatgaactat atagatattt tcaagataaa aatttcacaa gcaaaaaggc
     1381 ttatttgtct gtatttgct
//
LOCUS       DAPIWJ010000142         1387 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.144, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000142 DAPIWJ010000000
VERSION     DAPIWJ010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1387)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1387)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1387
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.144"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(16..1323)
                     /locus_tag="RJ259_001662"
     CDS             complement(16..1323)
                     /locus_tag="RJ259_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HDV7367335.1"
                     /translation="MILTLLTNPIIISVVLMTLLCLFRFNVLLSLLISALVAGVFSHL
                     ELVDTMNILISGMKENLKTALSYILLGAIAAAISKTNLTAYLIKIVSHFISHKKYLLL
                     LSIALISCFSQNLIPIHVAFIPLLIPPLLSLFNKLKIDRRAVACALTFGLTTPYMVLP
                     VGFGLTFQDLLKDNLNANNVSASLNDVTNTMYFAAICMIAGLFLALFVFYRKPREYQE
                     VEIAKVDLENLEMTRKEWGVLAGLVLTLILQILTMNLPLSGLLGFVLMVILGGVEFSK
                     VNEVFDDGLKMMGFIAFVILVAAGYGEVLKESGSVVDLVNSVVPWMEQSKFLAVFFML
                     LIGLIITMGIGTSFGTIPIIATLFCPICLELGFSTALIIFILGVAGALGDAGSPASET
                     TMGTTVGLNADKQHDHIKDTCIPTFIFYNGPLLILGSIIAMFL"
BASE COUNT          566 a          247 c          183 g          391 t
ORIGIN      
        1 atagatttgc aaaaattata aaaacatggc gataatacta cctaaaatca ataatggacc
       61 attataaaaa ataaaagttg gtatgcaagt atctttaatg tgatcgtgtt gtttatcagc
      121 atttaatcct acagtagttc ccatggttgt ttcactggct ggacttcctg catctcctaa
      181 agctcctgct actcctaaga taaatataat aagtgctgta ctaaaaccaa gctccaaaca
      241 aataggacaa aaaagcgtag ctatgatagg tatagttcca aaagaagtac ctatacccat
      301 agtgatgata agtcctatta aaagcatgaa aaatactgct aaaaatttac tttgttccat
      361 ccaaggaacg actgaattta caagatctac tactgatcca ctttctttta aaacttctcc
      421 atatcctgca gcaacaagga taacaaaagc tataaaaccc atcattttaa gcccatcatc
      481 aaaaacttca ttgacttttg aaaattcaac tccacccaaa ataaccatta aaacaaaacc
      541 caaaagccct gataaaggta aattcatagt caaaatttgc aaaattaaag ttaaaacaag
      601 cccagctaaa acgccccatt ccttacgcgt catttcaaga ttttctaaat ccactttagc
      661 aatttctact tcttgatact ctcttggctt acgataaaac acaaaaagcg ctagaaaaag
      721 tcctgctatc atacaaatag cagcgaaata catagtattt gtaacatcat ttaaagatgc
      781 acttacatta tttgcattta aattatcttt taaaagatct tgaaaagtaa gcccaaaacc
      841 tactggcaaa accatataag gcgtagtaag tccaaaagtt aaagcacaag caaccgctct
      901 acgatcgatt ttaagtttat taaaaagact taaaagaggt ggaatcaaca aaggtataaa
      961 agctacatga ataggaatta aattttgaga aaaacaagaa atcaaagcta tagacaaaag
     1021 caataaatat tttttatgag atataaaatg acttactatc ttaatcaaat atgcagttaa
     1081 atttgtcttt gaaatcgctg cggcaatggc ccctaaaagt atatagctaa gagctgtttt
     1141 taaattttct ttcattccgc ttataagtat attcatagta tctacgagtt caagatgaga
     1201 aaatacacct gcaacaagag ctgagatcaa aagactcaaa agtacattaa aacgaaacaa
     1261 acaaagtaaa gtcatcaaaa caacactgat aatgatagga ttagtaagta aagtcaaaat
     1321 cattccttaa ataattttaa aaatttaatt gtagaaaaaa cttagttaaa atgtaataaa
     1381 actcgaa
//
LOCUS       DAPIWJ010000143         1297 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.145, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000143 DAPIWJ010000000
VERSION     DAPIWJ010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1297)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1297)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1297
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.145"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..727
                     /locus_tag="RJ259_001663"
     CDS             <1..727
                     /locus_tag="RJ259_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4261 domain-containing protein"
                     /protein_id="HDV7367336.1"
                     /translation="HNFTSFVLLDEVDFNFSELKSILEDKFNIKIADENFTKEGVIFS
                     YENMLVTLNLINNPIPNHEVEYYANFNFMWKDALEQTKKHKAHLLIAVLSQDQSKLEQ
                     AKMFTKIAALCLDNKHALGFYTGAVVLEPSFYIENAKMLDDNRLPVYNWIYVSVYPSE
                     NGVNAYTYGLRNFDKLELEVCDLNIEEKELFFCIYDIVLHILTYDINLKDKDILKFED
                     GKEIKFIKSQGISVENESLKIIF"
     gene            791..1207
                     /locus_tag="RJ259_001664"
     CDS             791..1207
                     /locus_tag="RJ259_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HDV7367337.1"
                     /translation="MKAKLTLLALLGTTVLLAKDMVVPASELPNNAKEFISKNFKTAQ
                     IGLVKKDIDSYDVILNDGTEIDFMINGEWKEVDGKYKALPHTILPNVMKKVSATQPNA
                     QILEVDKEINGYKFKFNNNMEVYTDMQGNILGQKLD"
BASE COUNT          489 a          143 c          212 g          453 t
ORIGIN      
        1 tcacaatttt acctcttttg ttcttcttga tgaagttgat tttaattttt cggagttaaa
       61 aagcatttta gaagataaat ttaatataaa aatagctgat gaaaatttta ccaaagaggg
      121 cgtgattttt tcatatgaaa atatgttagt tactctaaat ttgattaaca atcctatacc
      181 taatcacgaa gtagaatact atgcaaattt taattttatg tggaaagatg ccttagagca
      241 aactaaaaaa cataaagctc atcttcttat agcggtgcta agtcaagatc aaagcaaatt
      301 agaacaagct aaaatgttta cgaaaattgc agctttatgt ttggataata aacatgcttt
      361 aggtttttat acaggtgcag ttgttttaga gcccagtttt tatatagaaa atgcaaaaat
      421 gttagatgat aatcgcttgc cggtatataa ttggatatat gttagtgttt atcctagtga
      481 aaatggagtt aatgcttata cttatgggct tagaaatttt gataaattag aacttgaagt
      541 ttgtgattta aacatagaag aaaaagaact tttcttttgt atttatgata ttgttttgca
      601 tattttaact tatgatatta atctaaaaga taaagatatt ttaaaatttg aagatggaaa
      661 agaaataaaa tttataaaaa gtcaaggtat aagtgttgag aatgaaagct tgaaaattat
      721 tttttaagtt tcacattcac ttcacagttt tgagttaaac tttcgccaac caagaaaaaa
      781 aggagaaatt atgaaagcaa aactaacttt acttgctttg ttgggtacta cggtgctttt
      841 agctaaagat atggttgttc ctgctagcga acttccaaat aatgccaaag aatttatttc
      901 taaaaatttt aaaaccgctc aaattggttt ggtgaaaaaa gatatagatt cttatgatgt
      961 gattttaaat gatggaactg aaattgattt tatgatcaat ggagagtgga aagaagttga
     1021 tggaaaatat aaggctttgc cacatactat cttacctaat gttatgaaaa aagtgagtgc
     1081 aactcaacca aatgctcaaa ttcttgaagt agacaaagaa attaatggtt ataaatttaa
     1141 gtttaataac aatatggaag tttatacaga tatgcaagga aatatcctag gtcaaaaatt
     1201 agattaattt ttgaaaattt aactccctta gaaaatttga tgcaaaaatt tggaagcata
     1261 gtcttccaaa tttttatttt ttgattgcaa aactcaa
//
LOCUS       DAPIWJ010000144         1180 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.146, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000144 DAPIWJ010000000
VERSION     DAPIWJ010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1180)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1180)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1180
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.146"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..143
                     /locus_tag="RJ259_001665"
     CDS             <1..143
                     /locus_tag="RJ259_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDV7367338.1"
                     /translation="KAKSLNLAPNYYIIISKNGFSKEIDKICEQNLLLLDLNDFKILL
                     EE"
     gene            147..1166
                     /gene="flgS"
                     /locus_tag="RJ259_001666"
     CDS             147..1166
                     /gene="flgS"
                     /locus_tag="RJ259_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system sensor
                     histidine kinase FlgS"
                     /protein_id="HDV7367339.1"
                     /translation="MNESILKSLDSNEKETLQKGLESLIEQTYVIENEYKTLNENYNS
                     LRAMVDEIIEVLPSALWILDKEKNIILQNQEALKNPKLLSIISLDKIRDELEFEGRFY
                     AVKIIAHNEKTIVSATDISDEKRNERLASMGSVAAHLAHEIRNPIGSISLLASTLFAR
                     SELKNKHIVLEIQKAIARVERIVNSTLLFTKGVHINALNFNLLELKEECESAINSYNF
                     TSQIDFEISFLDKQICADKALLGLVLQNLIYNAIDAIEESECEKPMIKILASYDNEKI
                     CIRVYDNGCEIKDEKLVFEAFKTTKLKGNGLGLSLSKEIINAHKGELSFQSDPKNFYF
                     TLPLV"
BASE COUNT          436 a          143 c          209 g          392 t
ORIGIN      
        1 caaaagcaaa gtctttaaat ttggctccaa attattacat tataatctca aaaaatggtt
       61 ttagcaagga aattgataaa atatgtgaac agaatttgct tttacttgat ttgaatgatt
      121 ttaagatttt attagaggaa tgataaatga atgaaagtat tttaaaaagt ttagactcaa
      181 atgaaaaaga aaccctacaa aaaggcttag aaagtcttat agaacaaact tatgtaatag
      241 aaaatgaata caaaacttta aatgaaaact ataactcctt acgcgcaatg gttgatgaga
      301 ttatagaggt gttgcctagt gcgctttgga ttttagataa agaaaaaaat attattttac
      361 aaaatcaaga agccttgaaa aatccaaaat tacttagtat cattagtctt gataaaattc
      421 gtgatgagct tgaatttgaa ggtaggtttt atgcggtaaa aatcatagcg cataatgaaa
      481 aaactatagt ttcagctaca gatattagcg atgaaaaacg caatgaaagg cttgcaagca
      541 tgggtagtgt agcggctcat ttggcacatg agataagaaa tcctattgga tctatatctt
      601 tacttgcttc aacccttttt gctcgtagtg agcttaaaaa taagcatata gttcttgaaa
      661 tccaaaaggc tattgctaga gtggagcgta tcgtaaattc aactctactt tttactaagg
      721 gtgtacacat caatgcttta aattttaatc ttttagagtt aaaagaagag tgtgaaagtg
      781 ccattaactc ttataatttc acttctcaaa tagactttga aatatctttt ttggataagc
      841 agatttgtgc tgataaagct cttcttggtt tggttttgca aaatttgatt tataatgcta
      901 ttgatgcgat agaagaaagc gaatgtgaaa agcctatgat taaaatttta gcaagttatg
      961 ataatgaaaa aatatgcatc agagtgtatg ataatggttg tgaaataaaa gatgagaaat
     1021 tggtttttga agcttttaaa acaacaaaac ttaaaggcaa tggacttggc ttgtctcttt
     1081 ctaaagaaat cataaacgct cataagggag agttaagttt tcaaagtgat cctaagaatt
     1141 tttattttac cttacctttg gtgtgataaa tattttcttt
//
LOCUS       DAPIWJ010000145         1166 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.147, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000145 DAPIWJ010000000
VERSION     DAPIWJ010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1166)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1166)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1166
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.147"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            45..1142
                     /locus_tag="RJ259_001667"
     CDS             45..1142
                     /locus_tag="RJ259_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HDV7367340.1"
                     /translation="MKTSFLAHSVAIVRSNFKGLLFTACIVIFAMYLSSVQSIKDTTH
                     LAATAFAIIIGVLLSPWFFKYQHHFQAGVHFSAKKLLRLGIVLYGFNITLTELLSVGL
                     KGFLLSAIVIFFVFIIALFVGTKIFKLDKETSMLVGAGSAICGAAAVLALESSLKSDP
                     FKGILAVGTVVIFGLVFMFLYPIAFSLNLFPFFDQNAMGVFMGATLHEVANVAGAAEM
                     AKDMAGFEQGASNVAVIIKMMRVILLVPFLLIVTYFFAKNQHSSSGKTAKSITIPYFA
                     FAFLGMIVLNTYLASKESILGIATSDIISLGKTLCTLCIVFAMAALGLQIDFKKFLKS
                     GSRVFGLAFVLGLVLIFGGYFLTLAFKGILW"
BASE COUNT          328 a          145 c          230 g          463 t
ORIGIN      
        1 ataaaaaaaa tataataaca caaaatttac aaaaaggaaa ataaatgaaa acaagttttt
       61 tagcacatag cgtggctata gtgcgatcaa attttaaggg tttgcttttt actgcttgta
      121 tagtgatttt tgctatgtat ctttctagtg ttcaaagtat caaagatacc actcatttag
      181 cagcgactgc ttttgctatt atcataggag tgttgctttc tccttggttt tttaaatacc
      241 aacatcattt tcaagccgga gtgcatttta gtgcgaaaaa acttttaaga cttggcattg
      301 ttttatatgg ttttaatatc actttaactg agcttttaag tgtaggattg aaaggatttt
      361 tgctttctgc tatagtgata ttttttgttt ttattattgc tttatttgtg ggaacgaaaa
      421 tttttaaact cgataaagaa acttctatgc ttgttggagc tggaagtgcg atttgcggtg
      481 cggcagcggt tttagcacta gagtcaagtt tgaaaagtga tccttttaag ggaattttag
      541 ctgtaggtac ggtggtgatt tttggacttg tatttatgtt cttatatccc atagcttttt
      601 ctttaaatct ttttcctttt tttgatcaaa atgctatggg tgtttttatg ggagctacgt
      661 tgcatgaggt ggcaaatgtc gcaggtgctg ctgaaatggc aaaggatatg gcaggatttg
      721 agcaaggtgc ttctaatgtt gcagtgatta taaaaatgat gagagtgatt ttacttgtgc
      781 cttttttgct tatagtgact tattttttcg ctaaaaatca acattcaagc agtggaaaaa
      841 ctgcaaaaag tatcactata ccttattttg cttttgcatt tttaggcatg atagttttaa
      901 atacttattt agcaagcaaa gaaagtattt taggtattgc tacgagcgat atcatctctt
      961 taggtaaaac actttgtact ttatgtatcg tttttgctat ggcagcttta ggcttgcaaa
     1021 ttgactttaa aaaattttta aaaagtggct ctagggtatt tggcttggct tttgttttag
     1081 ggcttgtttt gatttttgga ggatattttt taaccttagc ttttaaaggt atactttggt
     1141 aataaaaatt attttttatt ttagaa
//
LOCUS       DAPIWJ010000146         1163 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.148, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000146 DAPIWJ010000000
VERSION     DAPIWJ010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1163)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1163)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1163
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.148"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            69..>1163
                     /locus_tag="RJ259_001668"
     CDS             69..>1163
                     /locus_tag="RJ259_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HDV7367341.1"
                     /translation="MNYYQELKKYLNNNLFTSYSLEIDFPKIYNFNANQKAFRDILTK
                     ITKIYNKNKFIKQNEHQFEDEFISKVLEILGWCFVRQDEKIIQGKLEKPDFLLFSNDK
                     LKSKYENLDKETKKSSNDFTIILESKAYNIEIDNKKVKDNPHFQILRYLGNLKKNYGF
                     LTNGRFWRFYDNSILNSNKVFYEINLEKIIEDQNIEAFAYFYSVFSAFNFTEKEDHLE
                     ITLQNNKLSKIKIEDDLKSIIYGTNGNESLFEFIGSRIYNKTKADLKLIYENSLYFIF
                     RLLFIAYFEDKFEIILEKHKYFKSKISLRTLLENLQEDENSSGGFGELENIFNIYNKG
                     KGNFDMPVFNGGLFDESKTALLSTPKIFNDK"
BASE COUNT          497 a          144 c          145 g          377 t
ORIGIN      
        1 aagtctttaa agttttttag atataattta aaatgtcaaa tttttaaaaa tactttagaa
       61 agaaagccat gaattactat caagaactta aaaaatacct caacaataat ctttttacaa
      121 gctattcttt agaaattgac tttcctaaga tttataattt caacgcaaat caaaaagcct
      181 ttagagatat tttaactaaa attacaaaaa tttacaacaa aaataaattt ataaaacaaa
      241 acgaacatca atttgaagat gaatttatat caaaagtatt agaaatttta gggtggtgct
      301 ttgtaagaca agatgaaaaa atcatacaag gaaaattgga aaaacctgat tttctacttt
      361 ttagcaatga caaattaaaa tcaaaatacg aaaatttaga caaagaaaca aaaaaatcaa
      421 gcaatgattt cacaatcatt ttagagtcaa aagcttataa tatagaaata gacaataaaa
      481 aagtaaaaga caaccctcac tttcaaattc taagatatct aggcaatctt aagaaaaatt
      541 atggtttttt aaccaatggt agattttggc gtttttatga taattctata ctgaattcaa
      601 acaaagtttt ttacgaaatc aatctagaaa aaatcattga agatcaaaat attgaagctt
      661 ttgcgtattt ttatagtgtg tttagcgctt ttaatttcac agaaaaagaa gatcatttag
      721 aaataactct acaaaacaat aaactttcaa aaatcaaaat agaagatgat ttaaaatcta
      781 tcatttacgg aaccaatgga aatgaatctt tatttgaatt cataggctct agaatttaca
      841 ataaaacaaa ggcggattta aaactaatct atgaaaattc tttatatttt atctttaggc
      901 ttttatttat tgcttatttt gaagataaat ttgaaattat actagaaaaa cataagtatt
      961 ttaaaagtaa aatcagtctt agaaccttac ttgaaaattt acaagaagat gaaaactcaa
     1021 gtggtggctt tggagaactt gaaaatattt tcaacattta caacaaaggc aaaggcaatt
     1081 ttgacatgcc tgtttttaat ggcggtttgt ttgatgagag caaaaccgct cttttaagca
     1141 cgccaaaaat ctttaacgat aaa
//
LOCUS       DAPIWJ010000147         1120 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.149, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000147 DAPIWJ010000000
VERSION     DAPIWJ010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1120)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1120)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1120
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.149"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(55..297)
                     /locus_tag="RJ259_001669"
     CDS             complement(55..297)
                     /locus_tag="RJ259_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367342.1"
                     /translation="MNQNNNKTLKNELEDLQYELSIVLEAMLLYAGVKREKLENAIEA
                     YIDNIDNVLENSNKEGVDEILEVVEFLKNKYKDFFQ"
     gene            complement(281..>1120)
                     /locus_tag="RJ259_001670"
     CDS             complement(281..>1120)
                     /locus_tag="RJ259_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HDV7367343.1"
                     /translation="NQCEEFEKICKEKNTKIFLLDHHQSGEECAQKYSWYLLDSKRCA
                     TKIVYDFFSKICTPVLELSKFVDVVNAVDIWLSEDENFELGKVFLGLIANAKEINRVM
                     FKESQIDYMFFLLDKAWKFIGKENANILLDNATHFIKKDYFARKNDDTLSNLISYFVV
                     EKLSELKENFSIEYEGHKGILTSNIGNTSVIGNDFLVKNPDYDFFIDVSSRKTLSFRA
                     NGKIDVSLMAKNLVGGGGHKNASGGLFATFKDGANYNYIKAQIIDLIKSKELKKENNE
                     SKQ"
BASE COUNT          394 a          186 c          109 g          431 t
ORIGIN      
        1 aaatattagc aaaacttaaa gaatataaac taaaaaaaat taaaatacac tttttcattg
       61 aaaaaaatct ttgtatttat tttttagaaa ttccaccact tctaaaattt catcaacccc
      121 ttctttgttg gaattttcga gtacattatc tatattatca atataagctt ctattgcatt
      181 ttctaatttt tctcttttaa ctccagcgta taaaagcata gcttctaaaa ctatgctaag
      241 ctcatattgt aaatcttcta attcattttt taaggtttta ttattgtttt gattcattgt
      301 tttccttttt aagttctttg cttttaatta aatcaataat ttgagcctta atataattat
      361 aatttgctcc atctttaaat gtcgcaaaaa gtccaccact agcattttta tgtccgccac
      421 cacctactaa atttttagcc attaaactta catctatttt tccatttgca cgaaaactta
      481 aggtttttct agaactaaca tcaataaaaa agtcataatc aggatttttt actaaaaaat
      541 catttccaat aacagaagta ttgcctatat ttgaagttaa gatgccttta tggccttcat
      601 attctatgct gaaattttct tttagctcac ttagtttttc aactacaaaa taagaaatta
      661 aattagaaag agtatcatca ttttttctgg caaaataatc cttttttata aaatgagtag
      721 cattatcgag taaaatattt gcattttctt ttcctataaa tttccaagcc ttatcaagca
      781 agaaaaacat ataatcaatt tgagattctt taaacattac acgatttatt tcttttgcat
      841 tggcaatcaa gcctaaaaaa acctttccaa gttcaaaatt ttcatcctcg cttagccaaa
      901 tatcaacagc attaaccaca tcaacaaatt ttgaaagttc taaaacagga gtacagattt
      961 tagagaaaaa atcataaacg attttagttg cacatctttt agaatcaagt aaataccaag
     1021 aatatttttg agcacattct tcgccacttt gatgatgatc aagaagaaaa attttagtat
     1081 ttttctcttt gcaaattttt tcaaattctt cgcattgatt
//
LOCUS       DAPIWJ010000148         1107 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.150, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000148 DAPIWJ010000000
VERSION     DAPIWJ010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1107)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1107)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1107
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.150"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..343)
                     /locus_tag="RJ259_001671"
     CDS             complement(<1..343)
                     /locus_tag="RJ259_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2,3 sialyltransferase"
                     /protein_id="HDV7367344.1"
                     /translation="MSMNINALVCGNGPSLKNIDYKRLPKQFDVFRCNQFYFEDRYFV
                     GKDVKYVFFNPFVFFEQYYTSKKLIQNEEYNIENIVCSTINLEYIDGFQFVDNFELYF
                     SDAFLGHEIIKK"
     gene            398..1107
                     /gene="wlaN"
                     /locus_tag="RJ259_001672"
                     /pseudo
     CDS             398..1107
                     /gene="wlaN"
                     /locus_tag="RJ259_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344532.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,3 galactosyltransferase"
BASE COUNT          469 a          138 c          132 g          368 t
ORIGIN      
        1 gcttttttat aatctcatga cctaaaaaag catcactaaa gtataattca aaattatcaa
       61 caaattgaaa tccatctatg tattctaaat taatagtaga acaaactata ttttctatgt
      121 tatattcttc gttttgtata agttttttac tagtatagta ttgttcaaaa aacacaaaag
      181 gattaaaaaa aacatatttt acatctttac ccacaaaata tctatcttca aaataaaact
      241 gattgcatct aaatacatca aattgttttg gtaacctttt ataatctata ttttttaaac
      301 taggtccatt accgcatacc aaagcattaa tattcatact cattttatta ccttaaattt
      361 atagtataat tatatcaaaa aaaaataaag agctaaaatg agtcaaattt ccatcatact
      421 accaacttat aatgtggaaa aatatattgc tagagcatta gaaagttgca ttaaccaaac
      481 ttttaaagat atagaaatca ttgtagtaga tgattgtggt aatgataaaa gtatagatat
      541 agctaaagag tatgctagta aagatgatag aataaaaatc atacataatg aagagaattt
      601 aaagctttta agagcaagat atgaaggtgc taaagtagca acttcacctt atatcatgtt
      661 tttagattct gatgattatt tagaacttaa tgcttgcgaa gaatgtatta aaattttgga
      721 tatgggtggg ggggggtaaa attgatttgt tgtgttttga agcttttatt accaatgcaa
      781 aaaaatcaat aaaaaaatta aatataaaac aaggaaaata caacaacaaa gaatttacaa
      841 tgcaaatact taaaactaaa aatccatttt ggacaatgtg ggctaaaata atcaaaaaag
      901 atatttattt aaaagccttc aacatgttaa atctcaaaaa agaaatcaaa ataaatatgg
      961 cagaagatgc cttattatat tatcctttga caatattatc taatgaaata ttttacttaa
     1021 cacaaccttt gtatacccag catgtaaata gcaattctat aacaaataat attaattctt
     1081 tagaagctaa tattcaagaa cataaaa
//
LOCUS       DAPIWJ010000149          930 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.151, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000149 DAPIWJ010000000
VERSION     DAPIWJ010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 930)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 930)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..930
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.151"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..611
                     /locus_tag="RJ259_001673"
     CDS             <1..611
                     /locus_tag="RJ259_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HDV7367345.1"
                     /translation="FVKRYNYFWVIYTNSSFKNPNSMDNYPNLKKHLDKFQNVITSDN
                     KPYGLHRARDEKFFTGSPRIVALRKCVGEPKFSYVDFDCYVSATFYVIKTQRINVKYL
                     TAILNSKLIAFWLKHKGKMQGNNYQIDKEPLLNIPIVTINSKNQKIADELINLVDEIL
                     KVKEQDKNANTQELENKINSLVYKLYDLTEEEIKIIENKEQK"
     gene            608..>930
                     /locus_tag="RJ259_001674"
     CDS             608..>930
                     /locus_tag="RJ259_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367346.1"
                     /translation="MKLKLNLENCYGIGKLQKEFDFSDKNVLLFYAQNGTFKTSFAKT
                     FKNIKDDKQIKDEIFPERISKAYIEFNGEKINKEDIFVFDSYDREFDSSKSVTTFMAS
                     PKLKK"
BASE COUNT          390 a          104 c          130 g          306 t
ORIGIN      
        1 attttgtaaa aagatataat tatttttggg ttatttatac aaattcatct tttaaaaatc
       61 caaattctat ggataattat ccaaatttga aaaaacattt agataaattt caaaatgtta
      121 tcacttctga taataaacct tatggtttgc accgagcaag agatgaaaaa ttttttacag
      181 gaagtcctag aatagtagca cttagaaaat gcgtaggtga gcctaaattt agctatgttg
      241 attttgattg ttatgtgtca gcgacttttt atgtgattaa aactcaaaga attaatgtta
      301 aatatttaac tgctatttta aattcaaagc ttatagcatt ttggttgaaa cataaaggaa
      361 aaatgcaagg caataattat caaattgaca aagagccttt actaaatatc cctatagtaa
      421 ctataaattc caaaaatcaa aaaatagctg atgagcttat aaatttagtc gatgagattt
      481 taaaagtcaa agaacaagac aaaaacgcaa acacccaaga actagaaaac aaaatcaatt
      541 ctttggttta taaactttac gatctcaccg aagaagaaat aaaaatcatt gaaaataagg
      601 agcaaaaatg aaattaaaac ttaatttaga aaattgttat ggcataggga agttgcaaaa
      661 agagtttgat ttttcagata aaaatgtttt attattttat gctcaaaatg gtacttttaa
      721 aacttctttt gcaaaaacat ttaaaaatat taaagatgat aaacaaatta aagatgaaat
      781 atttccagaa agaatatcaa aagcctatat tgaatttaat ggtgaaaaaa ttaataaaga
      841 agatattttt gtttttgatt cttatgatag agaatttgat tcttctaaga gtgtaactac
      901 ttttatggct agccctaaac tgaaaaaaga
//
LOCUS       DAPIWJ010000150          915 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.152, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000150 DAPIWJ010000000
VERSION     DAPIWJ010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 915)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 915)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..915
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.152"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..449
                     /locus_tag="RJ259_001675"
     CDS             <1..449
                     /locus_tag="RJ259_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367347.1"
                     /translation="SLSMMILLFKDFIEYKQNKEIQNKNFIIQEEISKLKQDKQKLLT
                     NIQDLNFTLSNKISSTQQQFHILSTITKEINLDKNKAIILNQIISWLNSNELKITNLE
                     FEQTKIILSFIDENHFKRALENLNSAFKILDKNEETLNIMLEVIHE"
     gene            442..>915
                     /locus_tag="RJ259_001676"
     CDS             442..>915
                     /locus_tag="RJ259_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367348.1"
                     /translation="MNKIEVFLQNLNPREKFLFISFICLCALFLAFKIHDHFLEDIFQ
                     KTLVEHNYLALNEAKIENSHLKEIETKLTKQIKTEEEKLKYYKEKLHLFSYDKDFFNK
                     KINNLSKNLTINEIKFSQENKNFIHYNYVSLSLNGNFKDLLNFIQNLENLPIALKI"
BASE COUNT          410 a          121 c           81 g          303 t
ORIGIN      
        1 ttagtcttag catgatgatt ttattattta aagattttat agagtacaaa caaaataagg
       61 aaattcaaaa taaaaatttt atcatacaag aagaaatttc taaactaaaa caagataagc
      121 aaaaattatt aacaaacata caagatttaa actttactct ttccaataaa atatcatcta
      181 cacaacaaca atttcatatt ttatccacca taacaaaaga aatcaattta gacaaaaata
      241 aggcaatcat tctaaatcaa atcatatcat ggcttaactc caatgaactt aaaatcacaa
      301 atcttgaatt tgaacaaaca aaaatcattc tttcttttat cgatgaaaac cactttaaaa
      361 gagcattaga aaatctaaat tctgctttta aaattcttga taaaaatgaa gaaacattga
      421 atatcatgtt agaagtcata catgaataaa atagaagtat ttttgcagaa tttaaatcct
      481 agggaaaaat ttctttttat ttcttttatc tgtctttgtg ctttgttttt agcttttaaa
      541 attcacgatc actttttgga agatattttt caaaaaacat tagtagaaca taattacctt
      601 gcattaaatg aagcaaaaat agaaaattca catcttaaag aaatagaaac aaagctaaca
      661 aaacagataa aaacagagga agaaaaatta aaatactata aagaaaaatt gcatttattt
      721 tcttatgata aagatttttt caataaaaaa atcaataatt tatccaaaaa tttaaccatt
      781 aatgaaataa aattttccca agaaaacaaa aattttatcc actataatta tgtttctcta
      841 agtttaaatg gcaactttaa agacttgctc aattttatac aaaatttaga aaatcttcct
      901 atagctttaa aaatt
//
LOCUS       DAPIWJ010000151          887 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.153, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000151 DAPIWJ010000000
VERSION     DAPIWJ010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 887)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 887)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..887
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.153"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..>887)
                     /locus_tag="RJ259_001677"
     CDS             complement(<1..>887)
                     /locus_tag="RJ259_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="capsular biosynthesis protein"
                     /protein_id="HDV7367349.1"
                     /translation="GKPLTQEDINFLKNKYKPLKIKIDKQLTFSESQINYIKKKGFNE
                     KSYIANYNISYSISESNRLKNMSQNKYDLIIMTRLDIMFLKPLKLFEALENSCKNKID
                     FLNFSATDFNNVVFYTYMQSDNMELFRNQNRYITGIDLFLIAGNKAIEYISNWHNKVL
                     NYHPMGVGPERWITKQIKDYNLNLQLMYYSKPDCYIIFRSNTNDLKYEKQMQEIEEAK
                     RRWEYDKVQFLYENIIKNEYYLFEFVRFLADIGKLERIYKLFFIDFGIDVIRKLIEKG
                     VKDSEVGVNMLNFFINIFN"
BASE COUNT          312 a          136 c           77 g          362 t
ORIGIN      
        1 gattaaaaat gttaataaaa aaattcagca tattaacacc aacttctgaa tctttcacac
       61 ctttttcaat taattttcta ataacatcaa tgccaaaatc aataaaaaat aatttataaa
      121 ttctttccaa tttcccaata tcagcaagaa aacgaacaaa ctcaaataga taatattcat
      181 tttttataat attttcatat aaaaattgaa ccttgtcata ttcccatctt ctttttgctt
      241 cttcaatttc ttgcatctgt ttttcatatt ttaaatcatt ggtattgctt ctaaaaatta
      301 tatagcaatc tggcttagaa tagtacatca attgcaaatt taagttataa tctttaattt
      361 gtttagttat ccatctttct ggaccaaccc ccattggatg ataatttaaa actttattat
      421 gccagttact tatatattct attgctttat tgccggcaat taaaaataaa tctataccgg
      481 taatataacg attttgattt ctaaataact ccatattatc agattgcata tatgtataaa
      541 aaacaacatt attaaaatca gttgcgctaa aattaagaaa atcaatctta tttttacaac
      601 tattttccaa agcttcaaat aattttaatg gctttaaaaa cattatgtcc aatctagtca
      661 taatgattaa gtcatattta ttctgtgaca tattttttag cctattagat tcgcttatcg
      721 aataagatat attataattt gctatatatg acttctcatt aaaacctttt ttctttatat
      781 aatttatctg cgattcgcta aaagttagct gcttatctat ttttattttt aacggtttgt
      841 atttattttt taaaaaatta atatcttctt gagtcaatgg ctttcca
//
LOCUS       DAPIWJ010000152          856 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.154, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000152 DAPIWJ010000000
VERSION     DAPIWJ010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 856)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 856)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..856
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.154"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..>856
                     /locus_tag="RJ259_001678"
     CDS             <1..>856
                     /locus_tag="RJ259_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HDV7367350.1"
                     /translation="THQYIKYNKKNKKYWVLKLQTENFTFYTTSFKDLNLSKNQFLSL
                     RIITHNINFKDYLSKSFYAPSYDFEKLKEKEYNPIISYFLNQHTNEKIKEFYGALFFA
                     LPISLELRNDVNYYGIAHLIAISGYHIGLLFSLIFFILAPIYSFFQKRYFPYRNLRLD
                     LSILIFALLLAYACLIGFVPSFVRSLIMAFWVFYLLCKNIKIINFVTLFCSILLCISL
                     YPRLLFSIGFLFSILGVFYIFLYMHHFANKFNNLINIILLNIWTFFAMVLPVLYFFPL
                     ISYQQILGI"
BASE COUNT          274 a          112 c           96 g          374 t
ORIGIN      
        1 acgcaccaat atataaaata taataaaaaa aataaaaaat actgggtttt aaagttacaa
       61 actgaaaact tcacttttta tactacaagt tttaaggatt taaatttaag caagaatcaa
      121 tttttaagcc ttagaattat cacccataat attaacttta aagactatct gagtaaaagt
      181 ttttacgcac cttcttatga ttttgaaaaa ttaaaagaaa aagaatacaa tcccattata
      241 tcttacttct taaatcaaca tacaaatgaa aagattaaag aattttatgg tgctttattt
      301 tttgcactgc ccatatcttt agagcttaga aacgatgtaa attactacgg tatagcacac
      361 cttatagcaa ttagcggtta tcacataggc ttacttttta gtttaatttt ctttatttta
      421 gctccaattt atagtttttt ccaaaaaaga tattttcctt atagaaattt acgtttagat
      481 ttaagtattt taatttttgc actactttta gcttatgctt gtttaatagg atttgtccct
      541 tcttttgtgc gctccttgat tatggctttt tgggtttttt atctattgtg taaaaatata
      601 aaaatcatta atttcgttac gcttttttgt agtattttat tgtgcatttc tctttaccct
      661 agacttttat ttagtattgg atttttattt tctattttag gtgtttttta tattttttta
      721 tatatgcatc attttgcaaa taaatttaat aatcttataa atattatttt gcttaatatt
      781 tggacttttt ttgctatggt tttacctgtg ctttattttt ttccacttat aagctaccaa
      841 caaattttag gtatta
//
LOCUS       DAPIWJ010000153          826 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.155, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000153 DAPIWJ010000000
VERSION     DAPIWJ010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.155"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..>826)
                     /locus_tag="RJ259_001679"
     CDS             complement(<1..>826)
                     /locus_tag="RJ259_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="capsular biosynthesis protein"
                     /protein_id="HDV7367351.1"
                     /translation="VCLSGLFRGDIYKVIANLKFNLIDNLNADLFIFTWDRYVQYPGF
                     CGDENWVYRLFGGKFLKKCPDELKTLSFLKQKFPNTYSKLNIEQGVQKINQKYIQDIV
                     KCSNIQIQNEEEFISSLYLNMTSKRETNRIKMFYGIYKSIQMALEYEKINKFRYDYIF
                     RVRPDIGLIGNIEIKDLNKLKNNELAVDFFSYGVQDQFFYAHRNVMIEVAKIWEYCYE
                     KNDIFLRSFDSSHYLLFIYLTLRNILTVKPNFRRDVSLATRDNVFPNVAKELQEDFL"
BASE COUNT          313 a          141 c           71 g          301 t
ORIGIN      
        1 taaaaaatcc tcttgcaact ctttagcaac attgggaaaa acattatctc ttgtagcaag
       61 agaaacatct cgcctaaaat taggtttaac tgtcaaaata tttctcaaag ttaaatagat
      121 gaataataaa taatgagaac tatcaaaact tcttaaaaaa atatcatttt tttcataaca
      181 atattcccat atttttgcga cttcaatcat aacatttcta tgtgcataaa aaaattgatc
      241 ttgcacacca taagaaaaaa aatctacagc aagctcatta tttttaagct tatttaaatc
      301 ttttatctca atattcccta ttaaaccgat atctggcctt actctaaaaa tataatcata
      361 cctaaattta tttatttttt catattctaa cgccatctgt atagatttat aaattccata
      421 aaacattttt attcgatttg tttctctttt agatgtcata tttaaataca aagagctaat
      481 aaattcttct tcattttgaa tttgaatatt agagcacttt actatatcct gaatatattt
      541 ttggtttatt ttttgaacac cttgctctat atttaatttg ctataagtat ttggaaattt
      601 ctgctttaaa aaagaaagag tttttaactc atcagggcat ttcttcaaaa acttaccgcc
      661 aaataatcga tacacccaat tttcatcacc acagaatcca ggatattgaa catatctatc
      721 ccaagtaaaa ataaataaat cagcattcaa attatcaatc aaattaaatt ttaaattagc
      781 aataacctta taaatatctc ctctaaataa gcctgataaa catacc
//
LOCUS       DAPIWJ010000154          809 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.156, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000154 DAPIWJ010000000
VERSION     DAPIWJ010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 809)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 809)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.156"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..527)
                     /locus_tag="RJ259_001680"
     CDS             complement(<1..527)
                     /locus_tag="RJ259_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDV7367352.1"
                     /translation="MGFRINTNIGALNAHANSVVNARELDKSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTVKAT
                     IGATQSSKIGLTRFET"
     gene            complement(672..>809)
                     /locus_tag="RJ259_001681"
     CDS             complement(672..>809)
                     /locus_tag="RJ259_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDV7367353.1"
                     /translation="ESQIRDVDFAAESANYSKANILAQSGSYAMAQANSVQQNVLRLL
                     Q"
BASE COUNT          237 a          141 c          144 g          287 t
ORIGIN      
        1 gtttcaaagc gtgttaaacc tatcttagaa gactgggttg ctcctatggt agcttttaca
       61 gtttgatttg aactagcacc gatttgaaat tcttgattga taaaatttcc acttaaaagt
      121 tgcttaccgt taaatgaagt agtatttgcg atattatcaa gttcttccat taaacggttg
      181 atatctgctt gaagcatggt tcttgttttt agactttgtc catcttgagc tgcttgagtt
      241 gccttagttt taattgtatc taagatttta agttgctcat ccatagcctt atcagcagtt
      301 tgtaagatac ctatagcatc attaccattg ttgatagctt gacctaaagt ggctgcttgt
      361 gaacgcaaag aatctgctat cgccatccct gaagcatcat ctgctgcgga gttgattcta
      421 agacctgaac taagtctgct taaagactta tccagttctc tagcattaac aactgaattt
      481 gcatgtgcgt ttaatgcacc gatgttggtg tttatcctaa aacccatttt aaatcctttc
      541 aaaatattgc atcgaaaaga ttaaagcaaa aagtgttcca agttttagtt taattaaaaa
      601 ttttagagtt taaaataaaa aagcctagca ttaaactagg cttggatttg tatatattac
      661 agctttttaa actactgtag caatcttaaa acattttgtt gaacagaatt agcctgtgcc
      721 atggcataag agccgctttg agctaagata tttgctttag agtagtttgc actttcagct
      781 gcaaagtcta catcacggat ttgcgattc
//
LOCUS       DAPIWJ010000155          684 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.157, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000155 DAPIWJ010000000
VERSION     DAPIWJ010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 684)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.157"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            38..541
                     /gene="ctf"
                     /locus_tag="RJ259_001682"
     CDS             38..541
                     /gene="ctf"
                     /locus_tag="RJ259_001682"
                     /EC_number="1.16.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HDV7367354.1"
                     /translation="MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLF
                     AHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSIN
                     TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKN
                     IALSRKK"
BASE COUNT          258 a           96 c          105 g          225 t
ORIGIN      
        1 attataaaac attttaaatt ttaataagga gataagaatg ctttctaaag aagttgtaaa
       61 attactcaat gaacaaataa acaaagaaat gtatgcagca aacttatatc ttagtatgag
      121 ttcttggtgc tatgaaaaca gtcttgatgg agctggagcc ttcttgtttg cacatgcaag
      181 cgaagaaagt gatcatgcta aaaagcttat cacttatctt aatgaaacag attctcatgt
      241 agagcttcaa gaagtaaaac agcctgaaca aaatttcaaa tctttacttg atgtttttga
      301 aaaaacctat gaacatgagc aatttatcac aaaatcaatc aatactttag ttgaacacat
      361 gctaacacat aaagactatt ctacttttaa tttcttacag tggtatgtaa gcgaacaaca
      421 cgaagaagaa gcacttttcc gcggtatagt tgacaagatt aagttaattg gagaacacgg
      481 aaatggactt tatttagctg atcaatacat caaaaatatt gcattaagca gaaaaaaata
      541 atctttgccc tactatgggc aaatctcgct ttggattgaa ggtatgactt atttttctct
      601 agaatttagt attttaatga tagctttttt tgctatttat tggactttta aaaatgatta
      661 caaaatacaa aatattttaa tttt
//
LOCUS       DAPIWJ010000156          681 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.158, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000156 DAPIWJ010000000
VERSION     DAPIWJ010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 681)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 681)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.158"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            167..514
                     /locus_tag="RJ259_001683"
     CDS             167..514
                     /locus_tag="RJ259_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367355.1"
                     /translation="MKKSILFASALLASSMLFADSLKLEGTIAQIYDNNKTLLIDSIY
                     GGQMAIKVLPNTEIEMDDCGIFGTDKDGTFKDLKVGNFLESKISYGTPATPNTQAIPV
                     ARKIEIQCYKKAY"
BASE COUNT          270 a           91 c           82 g          238 t
ORIGIN      
        1 ttgataaagt attcactctt ttaaatttac aactagaagt aacgattggt aaatatgata
       61 aatcacataa tcttatcaaa actaaaaagt caaaattttt aacttcacat tcacttcact
      121 taaaaagttt ataatgttat cactttacat tgaaggagaa ataattatga aaaaaagtat
      181 tttatttgca tcagcacttt tagctagctc aatgcttttt gcagatagtc taaaacttga
      241 aggtactatt gcacaaattt atgataacaa taaaaccttg cttattgact caatttatgg
      301 cggacaaatg gctataaaag ttctaccaaa taccgaaata gaaatggatg attgtggtat
      361 ttttggaaca gataaagatg gaacttttaa agacttaaag gttggaaatt ttttagaaag
      421 taaaatttct tatggaacac ctgctacgcc aaatactcaa gctattccag tagctagaaa
      481 aattgaaatt caatgttata aaaaagctta ttaatataaa tcccttaaca agggatttat
      541 aaaaatcatt ctttactaaa ctacttcatc actcttaaat aaaaatttaa actctttttt
      601 aacaagcaat ttataaaata acacttatat tttcatctaa ggcaaataat gaaaaaatgg
      661 atttttattg ttttttgttt t
//
LOCUS       DAPIWJ010000157          665 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.159, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000157 DAPIWJ010000000
VERSION     DAPIWJ010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 665)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.159"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            56..>665
                     /locus_tag="RJ259_001684"
     CDS             56..>665
                     /locus_tag="RJ259_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDV7367356.1"
                     /translation="MNIWEQIFSKKEWGKYPSENVIRFIARNFYNVQDRSKINILELG
                     FGTGANLWFCAKEGFSVSGIEWSKTGLERFKARMKDENLSDKIKQIELGDYIDKLDSF
                     KDDSFDAWMDNYSLAYNDFDKTKKIIDKAMKKLKKGGKFLSVTPSLDNDGFEKDESLG
                     YHLVKPTSGSDACTGIIRYCDEKDLRKLYESATYSISDIKIHI"
BASE COUNT          266 a           57 c          135 g          207 t
ORIGIN      
        1 aaaaaaattt aaccaaacaa ttaaatgaac tttttatagt tgaaggatat aaaatatgaa
       61 tatatgggaa caaatttttt ctaaaaaaga atggggcaag tatccaagtg aaaatgttat
      121 aagatttata gcaaggaatt tttataatgt gcaagataga agtaaaatca atattttaga
      181 acttggtttt ggaacaggag ctaatttatg gttttgtgca aaagaaggtt ttagtgtaag
      241 tggtatagaa tggagcaaaa caggattaga gcgttttaaa gctcgtatga aagatgagaa
      301 tttaagtgat aaaatcaagc aaattgaact gggtgattat atcgataaat tagatagttt
      361 taaagatgat agttttgatg cgtggatgga taattattcc ttagcttaca atgattttga
      421 taaaactaaa aagattatag acaaagcgat gaaaaaactc aaaaaaggtg ggaaatttct
      481 ttctgtaact ccaagtcttg acaatgatgg ttttgaaaaa gatgagagtt tggggtatca
      541 tttagtaaaa cctacaagtg gaagtgatgc ttgcacaggt attataaggt attgtgatga
      601 aaaagattta cgaaaacttt atgagagtgc aacctatagt attagtgata taaaaattca
      661 catac
//
LOCUS       DAPIWJ010000158          625 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.160, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000158 DAPIWJ010000000
VERSION     DAPIWJ010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.160"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            21..431
                     /gene="perR"
                     /locus_tag="RJ259_001685"
     CDS             21..431
                     /gene="perR"
                     /locus_tag="RJ259_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HDV7367357.1"
                     /translation="MELLQMLKKHELKATPQRLCVLKILKRHEHPNIDELYTEIKKEY
                     PSISLATVYKNLNTLQEQGLVVEINVLNQKTCYDIYEEEHIHVVCTKCGGIEDLSFKD
                     AKLYEYQEHLEKKIGNLVNHLSVCAYVDNCKKCH"
BASE COUNT          253 a           74 c           87 g          211 t
ORIGIN      
        1 aaaagcaagg aataaataaa atggaattac tacaaatgct taaaaaacat gagttaaaag
       61 ctactccgca aagactatgt gttttaaaaa ttttaaaaag acatgagcat cctaatattg
      121 atgaattata tacagaaatt aaaaaagaat acccttcaat ctctttagcg acggtttata
      181 aaaatcttaa tactttacaa gaacaaggtt tagttgttga aatcaatgtt ttaaatcaaa
      241 aaacttgtta cgatatctat gaagaagaac atattcatgt tgtttgcacc aaatgtggtg
      301 gtatagagga tttaagtttt aaagatgcta agctttatga atatcaagag catttagaaa
      361 aaaagatagg caatctcgtc aatcatctgt ctgtttgtgc ttatgttgat aattgcaaaa
      421 agtgtcatta agcaaaataa ggttaaaata acccatatat tttaagggtt attttaatgg
      481 tttatgaaat tcaaaaaaac tttttactat ctgattgcac tcttttagag aatttaaaaa
      541 aagataatat accttttcga aattctaaat ttgaaacttt ttatactcaa ataacttcaa
      601 atcatagtgt taaatttcaa agttt
//
LOCUS       DAPIWJ010000159          625 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.161, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000159 DAPIWJ010000000
VERSION     DAPIWJ010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.161"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..>625
                     /locus_tag="RJ259_001686"
     CDS             <1..>625
                     /locus_tag="RJ259_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002904220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LicD family protein"
                     /protein_id="HDV7367358.1"
                     /translation="NTKKKYFSKYDALIALEDLSSVFNSLNIKFFLVSGTFLGCIREN
                     NFISNDYDIDVGVWEEDFSNELKIALEQYGTFYIHDPKWKGGIKLKHINGILIDIFIH
                     YKDGCKHYHLGSAVKWYNSTFDLIKYDFLGKEYFGFKEYDRYLSENYGDWRIPKKNFD
                     NILDTPNAVIFNENNFILHLYSLLMKQYAIDYKNTILDLLKKYKFRED"
BASE COUNT          231 a           55 c          102 g          237 t
ORIGIN      
        1 aatactaaaa aaaaatactt ttcaaaatat gatgccttga tagctttgga agatttatct
       61 agtgttttta attcattaaa tataaagttt tttttagtca gtggtacttt tttaggttgt
      121 attagggaaa ataattttat atcgaatgat tatgatattg atgttggggt ttgggaagaa
      181 gattttagca acgaattaaa aatagcttta gaacaatatg gtactttcta tattcatgat
      241 ccaaaatgga aaggtgggat taagcttaaa catatcaatg gtatattgat tgatattttt
      301 attcactata aagatggttg caagcattat catttaggat ctgctgttaa atggtataac
      361 tcaacttttg atttaattaa gtatgatttt ttaggcaaag aatattttgg ttttaaagaa
      421 tatgatcgtt atttaagtga aaactacggc gattggagaa tccccaaaaa aaattttgat
      481 aatattctag atactccaaa tgcggtaatt tttaacgaaa ataattttat attgcatttg
      541 tatagtcttt taatgaagca atatgcaata gattacaaaa atacaatttt agacttatta
      601 aaaaaatata agtttagaga ggatt
//
LOCUS       DAPIWJ010000160          608 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.162, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000160 DAPIWJ010000000
VERSION     DAPIWJ010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 608)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.162"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            71..>608
                     /locus_tag="RJ259_001687"
     CDS             71..>608
                     /locus_tag="RJ259_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDV7367359.1"
                     /translation="MNLWDKKAKTYARYQNTLNTIQKQTFEYLQNLNISFQNKSIIDI
                     GCGTGVWTLHLAKEAKEILALDSANTMLEILQEDAKKLNLNNIKCENLSFETWMQNNP
                     NVKFDLAFLSMSPALQNEKDYTNFLNLAKIKIYLGWTDYRKSDFLDPIFKYFNTEFKG
                     FYKKDLENYLLEKNIFFHK"
BASE COUNT          255 a           68 c           80 g          205 t
ORIGIN      
        1 aagcccaaaa aaagggcttg aattttaaaa atttatgcta tgattttata tattttatca
       61 aggaaaatat atgaatttat gggataaaaa ggccaaaact tacgcaagat atcaaaacac
      121 tttaaacacc atacaaaagc aaacttttga atatttacaa aatttaaata tttcttttca
      181 aaataaaagt attatagaca taggatgtgg aactggggtt tggactttac acttagctaa
      241 agaagctaaa gaaattttag ccctagatag tgcaaatact atgcttgaaa ttttacaaga
      301 agatgctaaa aaactaaatc ttaacaatat aaaatgcgaa aatttgagct ttgaaacttg
      361 gatgcaaaac aatcctaatg ttaaatttga tcttgcattt ttaagtatgt cccctgcttt
      421 gcaaaatgaa aaagattata caaatttctt aaatctagcc aaaataaaaa tttatcttgg
      481 ttggactgat tatagaaaaa gtgatttttt agatccgatt tttaaatatt ttaatactga
      541 atttaaaggt ttttataaaa aagatttaga aaattattta ctagaaaaaa atatattttt
      601 tcataaga
//
LOCUS       DAPIWJ010000161          587 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.163, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000161 DAPIWJ010000000
VERSION     DAPIWJ010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 587)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.163"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..>587
                     /locus_tag="RJ259_001688"
     CDS             <1..>587
                     /locus_tag="RJ259_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF262 domain-containing protein"
                     /protein_id="HDV7367360.1"
                     /translation="FDKNFIESIEAKWEGIKNAFIETFRLLRSFGFEAKTLSSNNAIL
                     PILYFIYHKNLTNNIVDSVKCNENRAIIKKWLLRAIILKPFGGSSDTVLSNMRKAFIK
                     DFKQNSGFFDREIELFPLEEIEKEAKYIQTIDEEYLENNVIECRKNSPEAFAVLSLLY
                     PNLDYKNNNFHKDHLHPESAYKEYEKLYKATDNCI"
BASE COUNT          236 a           58 c           91 g          202 t
ORIGIN      
        1 ttttgataaa aattttatag aatccataga agctaaatgg gaaggcataa aaaatgcttt
       61 tattgaaaca tttagattgc ttagaagttt tggatttgaa gcaaaaacac tttcatcaaa
      121 taatgctatt ttacccattt tatattttat ttatcataaa aatttgacaa ataatatagt
      181 agattctgtc aagtgtaatg aaaatagagc tataataaaa aaatggttgt taagggcaat
      241 tattttaaag ccttttggtg gaagtagtga tacggtattg tctaacatgc gtaaagcttt
      301 tattaaagat tttaagcaaa atagtggctt ttttgataga gaaatagaat tatttccatt
      361 ggaagaaatt gaaaaagagg caaaatatat acaaacaata gatgaagaat atttagaaaa
      421 taatgtcata gaatgccgta aaaatagtcc tgaagcgttt gctgtgttat ctttacttta
      481 tccaaattta gattataaaa ataataattt tcataaagat catttgcatc cagagtccgc
      541 atataaagaa tatgaaaaac tttataaagc tacagataat tgtattt
//
LOCUS       DAPIWJ010000162          575 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.164, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000162 DAPIWJ010000000
VERSION     DAPIWJ010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 575)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.164"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..>575
                     /locus_tag="RJ259_001689"
     CDS             <1..>575
                     /locus_tag="RJ259_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367361.1"
                     /translation="SLYENQKEKIQKIINNSKLEQESWKKIIEIFNSRFIVPFEVGIE
                     NQDDILLKNEVAKFVFKFKDNANEKIVNKEKLEEILSNGEKRALYILQILFEIEAQKN
                     TNKPILLIFDDIVDSFDYRNKHAVVEYLDDIRENINFKIIIMTHNFDFYRAIARFGAS
                     KFMIHRNDEREIVFGRGEYTNEFIKSLKKND"
BASE COUNT          251 a           43 c           94 g          187 t
ORIGIN      
        1 tttcgttata tgaaaatcaa aaagaaaaaa tacaaaaaat tataaataat tcaaaattag
       61 aacaagaatc atggaaaaag attatagaaa tattcaatag cagatttata gttccttttg
      121 aagttggcat agagaatcaa gatgatattt tattgaaaaa tgaagtagca aaatttgttt
      181 ttaaatttaa ggacaatgca aatgaaaaaa ttgttaataa agagaaacta gaagagattt
      241 taagcaatgg agaaaaaagg gctttgtata ttttgcaaat attatttgag atagaagctc
      301 aaaaaaatac aaataagcct attttactta tatttgatga cattgtagat tcttttgatt
      361 atagaaataa acatgctgtt gtggagtatc tcgatgatat acgagaaaat ataaatttta
      421 agattataat tatgacacat aattttgatt tttatagagc tatagcgaga tttggtgcat
      481 caaaatttat gatacataga aacgatgaaa gggagattgt atttggaaga ggtgagtata
      541 ctaatgaatt tataaaatct cttaaaaaaa atgat
//
LOCUS       DAPIWJ010000163          540 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.167, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000163 DAPIWJ010000000
VERSION     DAPIWJ010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.167"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..>540
                     /locus_tag="RJ259_001690"
     CDS             <1..>540
                     /locus_tag="RJ259_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDV7367362.1"
                     /translation="GEVQFTLKNYNGIDDFKFQKVVISTSVGTGLGALADEINKNADK
                     TGVRATFTVETRGMAAVRAGTTSDDFAINGVKIGKVDYKDGDANGALVSAINSVKDTT
                     GVEASIDANGQLLLSSREGRGIKIEGNIGGGAFINTDMKENYGRLSLVKNDGKDILIS
                     GNSLSSAGFGTTQFISQASV"
BASE COUNT          178 a           73 c          122 g          167 t
ORIGIN      
        1 ggtgaagtgc aatttactct taaaaattac aatggtatag atgattttaa gtttcaaaaa
       61 gttgtgattt caacttcagt tggaacagga cttggagctt tagcagatga gatcaataaa
      121 aatgctgata aaacaggtgt tagagctact tttacagtag aaactagagg tatggctgca
      181 gttagggctg gaactacttc agatgatttt gctatcaatg gggtaaaaat cggtaaagta
      241 gattacaaag atggtgatgc taatggagct ttagtttctg caatcaattc ggttaaagat
      301 actacaggag ttgaagcttc aatcgatgct aatggacaac ttttgcttag ctcaagagaa
      361 ggaagaggga ttaaaatcga aggtaatata ggtggaggtg cctttatcaa tactgatatg
      421 aaagaaaact atggccgctt gtctttagtt aaaaatgatg gtaaagatat tttaatcagc
      481 ggtaacagtc tttcttctgc aggctttggc acaactcaat ttatctctca agcttctgtt
//
LOCUS       DAPIWJ010000164          494 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.168, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000164 DAPIWJ010000000
VERSION     DAPIWJ010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 494)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.168"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            3..>494
                     /locus_tag="RJ259_001691"
     CDS             3..>494
                     /locus_tag="RJ259_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HDV7367363.1"
                     /translation="MKKILLFILSLGIFYTFTQAKNLEQEQNTSSNLVSVSIAPQAFF
                     VKKIAANTLDVNVILPPNSNEHNFEFKPSTMKKLEKSDIYFTIGLEFEKVFTDKFKQN
                     FSKLQVVNMQKNIALIQTHDTHEHSHEHEHHEHEHFDPHTWLDPILVQTMALNIYDTL
                     IQKY"
BASE COUNT          191 a           76 c           61 g          166 t
ORIGIN      
        1 ttttgaaaaa aattctatta tttattttat ctttagggat attttatact ttcacacaag
       61 ctaaaaattt agagcaagaa caaaatacta gtagcaattt agttagtgtc agtatagcac
      121 ctcaagcatt ttttgttaaa aaaatagctg caaatactct agatgtcaat gttattttgc
      181 ccccaaatag caatgagcat aattttgaat ttaaaccaag tactatgaaa aaacttgaaa
      241 aaagtgatat ttatttcact ataggcttag aatttgaaaa agtttttacg gataaattta
      301 aacaaaattt ttcaaaactt caagttgtaa atatgcaaaa aaacatagct ttgattcaaa
      361 ctcatgatac acacgaacac tctcatgagc atgaacacca cgaacatgag cattttgatc
      421 ctcatacttg gctagatcct attttagtcc aaactatggc tttaaatatt tatgacacct
      481 tgattcaaaa atat
//
LOCUS       DAPIWJ010000165          465 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.170, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000165 DAPIWJ010000000
VERSION     DAPIWJ010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 465)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 465)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.170"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            <1..>465
                     /locus_tag="RJ259_001692"
     CDS             <1..>465
                     /locus_tag="RJ259_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HDV7367364.1"
                     /translation="LGDEIVKMLKQSSDFANALANESGKLQTAVQSLTTSSNSQAQSL
                     EETAAALEEITSSMQNVSVKTSDVITQSEEIKNVTGIIGDIADQINLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAERTQKSLSEIEANTNLLVQSINDMAESIKEQTAG"
BASE COUNT          168 a           69 c           88 g          140 t
ORIGIN      
        1 tttaggtgat gaaatagtta aaatgctaaa acaaagttca gactttgcta atgctttagc
       61 taatgaaagt ggaaaattac aaactgctgt tcaaagctta accacttctt caaattctca
      121 agctcaatct ttagaagaaa ctgcagcagc tttagaagag atcacttctt ctatgcaaaa
      181 tgtttcagtt aagactagtg atgttatcac tcaatctgaa gagattaaaa atgttacagg
      241 tattataggt gatattgcag atcaaatcaa tcttctagct ttaaatgcag ctattgaagc
      301 agctcgtgct ggagaacatg gtagaggctt tgcagtggta gctgatgaag ttagaaagtt
      361 agctgaaaga actcaaaagt ctttatcaga aattgaagct aatactaatt tacttgttca
      421 atctatcaat gatatggcag aaagtattaa agaacaaact gcagg
//
LOCUS       DAPIWJ010000166          440 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.171, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000166 DAPIWJ010000000
VERSION     DAPIWJ010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 440)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 440)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..440
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.171"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
BASE COUNT          207 a           62 c           54 g          117 t
ORIGIN      
        1 caatttttaa tataatctaa aattataatt ttaaatgaga aatcaggagc ttgctaatgt
       61 tacttaacac gccttgcagg gggataatag atacaaattt tgaaagcaaa agaattagca
      121 taacttcaac tttaaaattt caagaaaaaa agaaaaagta gaagctaagg ctgagaaaga
      181 agaagcaaat aaagacaata gcaattctac aaacacaaat accaataaaa aagataaact
      241 tttggatata tctgcttagt ctaaaatata ctatagctat atctccttaa agaatacgca
      301 ataaatgatt ttttgatttt tattaagctt ttaaaacatc gaaaaaagga aaaattaaaa
      361 aacacaaaaa caatatccca aagtccatag cttagaagaa gaccttgcga tacttaaaaa
      421 caacccatat taaatcacaa
//
LOCUS       DAPIWJ010000167          436 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.172, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000167 DAPIWJ010000000
VERSION     DAPIWJ010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 436)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 436)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.172"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(<1..>436)
                     /locus_tag="RJ259_001693"
     CDS             complement(<1..>436)
                     /locus_tag="RJ259_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HDV7367365.1"
                     /translation="MGFGSVNKGVVLGGYSSVSAYMSAEGSGFSAGSGYSVGSTKNYS
                     AILSTNTITISAASQLSKVYNVSAGSGFSSQSGLSQFATMKTSVGNSLGVKAETAGVT
                     TLKGAMAVMDIAETATTNLDQIRADIGSVQNQLQVTINNITVT"
BASE COUNT          141 a           92 c           73 g          130 t
ORIGIN      
        1 gttacagtga tgttgtttat agtcacttga agttgatttt gcactgaacc aatgtcggct
       61 ctgatttgat caagatttgt tgtagctgtt tcagctatat ccatcacagc catagcacct
      121 ttaagtgtag ttacacctgc tgtttcagct tttactccaa gagaatttcc tactgaagtt
      181 ttcatagttg caaactgaga aagtccgctt tgactagaaa aacctgaacc tgcagaaaca
      241 ttatatacct tagaaagttg cgaagcagct gaaatagtta ttgtattagt agaaagtata
      301 gcagaataat ttttggtact acctacagaa taacctgaac ctgccgaaaa tccactgccc
      361 tcagcactca tataagcact aacagaagaa taaccaccta acacaactcc tttgtttaca
      421 gaaccaaatc ccatag
//
LOCUS       DAPIWJ010000168          384 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.174, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000168 DAPIWJ010000000
VERSION     DAPIWJ010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 384)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 384)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.174"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            12..>384
                     /locus_tag="RJ259_001694"
     CDS             12..>384
                     /locus_tag="RJ259_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HDV7367366.1"
                     /translation="MKKILLLGALFAVNLWAVNDIEVKNAFVKQTPPHAQNSAIFLTI
                     FNNTNKDIALISAKSDISEVSELHTHIHKDGKMMMQKIPEIIIKAHSSTELKSGGYHI
                     MLLKLKKPIIKDTKVNLDLKFN"
BASE COUNT          154 a           54 c           56 g          120 t
ORIGIN      
        1 aaggatacaa tatgaaaaaa attcttctct taggtgctct ttttgctgta aatctttggg
       61 ctgttaatga tatagaggta aaaaatgcct ttgtaaaaca aactccacct catgcgcaaa
      121 atagtgctat ttttcttact atttttaata atactaataa ggatattgct ctaataagtg
      181 ccaaaagcga tatcagtgaa gtcagtgaac tgcatacaca tatacataaa gatggaaaaa
      241 tgatgatgca aaaaattcct gaaattatta taaaagctca ttcaagcaca gagcttaaat
      301 ctggaggtta ccatataatg cttttaaaac taaaaaaacc tattattaaa gacacgaagg
      361 taaatttaga tttaaaattt aata
//
LOCUS       DAPIWJ010000169          359 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.denovo.176, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000169 DAPIWJ010000000
VERSION     DAPIWJ010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 359)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 359)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.denovo.176"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            66..>359
                     /locus_tag="RJ259_001695"
     CDS             66..>359
                     /locus_tag="RJ259_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDV7367367.1"
                     /translation="MLIIGHKLLKNLDFSFIESVEEVKDNKVYCIVYDEKLISYLSQN
                     DFEFAILVQNKDEIFLANALGAKFLLCNDKKLAKFASKVAEFYVFDSRILMIVD"
BASE COUNT          136 a           20 c           57 g          146 t
ORIGIN      
        1 ttgcttggta acaattttat aagtataatt tacaaaataa taaaaaatag agctaaggaa
       61 aaaaaatgct tattattgga cataaattat taaaaaattt agatttttct tttattgaaa
      121 gtgttgaaga agttaaagat aataaagttt attgtattgt ttatgatgaa aaattgattt
      181 cttatttaag tcaaaatgat tttgaatttg ctattttagt tcaaaataaa gatgagatat
      241 ttttagccaa tgctttagga gctaagtttt tgctttgtaa tgataaaaaa cttgcaaaat
      301 ttgctagtaa ggttgcagaa ttttatgttt ttgatagtag gattttaatg attgttgat
//
LOCUS       DAPIWJ010000170         9937 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.guided.062, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000170 DAPIWJ010000000
VERSION     DAPIWJ010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9937)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9937)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9937
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.guided.062"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            1..774
                     /locus_tag="RJ259_001696"
     CDS             1..774
                     /locus_tag="RJ259_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-193"
                     /protein_id="HDV7367368.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFSRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKVKNDG"
     gene            complement(859..1743)
                     /locus_tag="RJ259_001697"
     CDS             complement(859..1743)
                     /locus_tag="RJ259_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HDV7367369.1"
                     /translation="MIRIDINHPMNTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNIKENIA
                     YAASSKAKVSELLALMKLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSNISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDVKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(1740..2414)
                     /gene="modB"
                     /locus_tag="RJ259_001698"
     CDS             complement(1740..2414)
                     /gene="modB"
                     /locus_tag="RJ259_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HDV7367370.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKSKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYSLAHQYAFILFIFSFLVLFSLYFIN
                     KKMSFQ"
     gene            complement(2407..2808)
                     /locus_tag="RJ259_001699"
     CDS             complement(2407..2808)
                     /locus_tag="RJ259_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HDV7367371.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSVLMLELKSLENLKI
                     GVSVELLFKEHELCFSASKTLLSVENSFLAKITKIKKGKLLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            complement(2805..3554)
                     /gene="modA"
                     /locus_tag="RJ259_001700"
     CDS             complement(2805..3554)
                     /gene="modA"
                     /locus_tag="RJ259_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HDV7367372.1"
                     /translation="MKKFVVFFGILLFVSCLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGVENLKEKANKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAVIIDAKYFSPLEQSYVITKY
                     AKDKKLAFEFNEFIGSSKAKEIFKKYGFSTP"
     gene            complement(3605..4291)
                     /gene="bioC"
                     /locus_tag="RJ259_001701"
     CDS             complement(3605..4291)
                     /gene="bioC"
                     /locus_tag="RJ259_001701"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HDV7367373.1"
                     /translation="MNFLKAKDYEKHAKVQDFMGLKLCEILKNLRISHFEKVFEFGCG
                     RGELSKKLQNFITFDEYLKNDILDFKENSSILIFDMNEIAKQDLSKEKFDLIVSNATL
                     QWLDLKRIIPSLRDMLNQNGILLLSTFAEQNLKEIKQSTGFGLNYFSLNELEQIFKVY
                     FNEVKITQELIKLSFDNALDVFRHLKLSGVNSLGFYPLNKGFLKEFEEKFQNKLTYHP
                     VFILCKNDIK"
     gene            complement(4288..4899)
                     /locus_tag="RJ259_001702"
     CDS             complement(4288..4899)
                     /locus_tag="RJ259_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HDV7367374.1"
                     /translation="MKYEFLCKNPDSKKLIVVFGGFASHSSHFSHLKSDKNVILFYDY
                     ENFDLNFDFKAFDELFLIAFSMGVCVANRLLKELNFKQKIAINGTNLGIDKSKGIHPA
                     IFRKTLQNFKLENFKEALFKERKNLTKDFIFKDEKALKIELEKLFDFALVKQEENLLW
                     DKVYSSKKDEIFPPNALKNAFSKLIFLNEPHFAFFHFKTWDEL"
     gene            complement(4896..6038)
                     /locus_tag="RJ259_001703"
     CDS             complement(4896..6038)
                     /locus_tag="RJ259_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HDV7367375.1"
                     /translation="MKLEKILQDLEQNHNLRTLTPLKHENKFVYKQDHKLLNLVGNDY
                     LYLASSKELKAEFLNTLKEQDLFFSSSSSRSLSGNFEIYEKLESFLKTKFKDKEILHF
                     NSGYHLNISCIAALSSVSKTLFLTDKFIHASMIDGLRLGRADFFRFHHKDMNHLESLI
                     QKHYENYENIIVLSEALFSMDGDFSDFKTLCELKRRYDKIKLYIDEAHSVGCFDEEGL
                     GLVKKLALENEVDFLVFTFGKALASMGACIICDEKYKKFFINKARAFIYSTALPPINV
                     AWTQFIFKKMPYFKKEREKLELLSTFFKSKLQEKNHIVLGDAYIICLLLGENKKALEI
                     SQKLQKAGFFAPAIKEPTVPKNTARIRFSLHAGLNTEELERIIELL"
     gene            6106..7389
                     /locus_tag="RJ259_001704"
     CDS             6106..7389
                     /locus_tag="RJ259_001704"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HDV7367376.1"
                     /translation="MQNQILKNLDLKHIWHPCTQMKDHETLPLIPIKKAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKIANAIKKQVDELEHVILAGFTHEPIIKLSARLCEKV
                     GRNFNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKALLLECLSTPVPQGKDYTKELEILKDILEKNASEICAFILEPLVQCAGNM
                     HMYEARFIDEAIKLCHKFGVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLDIFEDENILV
                     KNQILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLFVFQKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYVLESLEQIFKEF"
     gene            complement(7376..7981)
                     /locus_tag="RJ259_001705"
     CDS             complement(7376..7981)
                     /locus_tag="RJ259_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HDV7367377.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKALDIILPKSKNLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP"
     gene            complement(7991..8305)
                     /locus_tag="RJ259_001706"
     CDS             complement(7991..8305)
                     /locus_tag="RJ259_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDV7367378.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELVSTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLIAVIITCTAGLKF
                     LS"
     gene            complement(8309..8647)
                     /locus_tag="RJ259_001707"
     CDS             complement(8309..8647)
                     /locus_tag="RJ259_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDV7367379.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWQYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIAILLLSI
                     IALKWVSKEA"
     gene            8781..9317
                     /locus_tag="RJ259_001708"
     CDS             8781..9317
                     /locus_tag="RJ259_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HDV7367380.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            9314..9859
                     /locus_tag="RJ259_001709"
     CDS             9314..9859
                     /locus_tag="RJ259_001709"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HDV7367381.1"
                     /translation="MILVVGLGNIGVEYENTRHNVGFMLIDLLLKESNFTNLTNSKFK
                     GELFKIGSSLLLLKPSTYMNNSGLSVKAVNDFYKCERMIVIHDDIDINLGALRFKKGG
                     SSGGHNGLKSIDTLCGNDYERVRIGVGKGENVISHVLGKFKSEEEITLSKVLEHAKKA
                     LLELIENDDLSAISSKYSLKA"
BASE COUNT         3615 a         1494 c         1412 g         3416 t
ORIGIN      
        1 atgaaaaaaa taactttatt tttacttttc ttaaatttag tgtttgggca agataagata
       61 ttaaataatt ggtttaaaga gtataataca agcggcactt ttgtttttta tgatggaaaa
      121 acttgggcga gtaacgactt ttcaagggct atggagactt tctctcccgc ttccactttt
      181 aaaattttta atgctctaat tgcacttgat agtggtgtga taaaaactaa aaaagaaatt
      241 ttttatcact atagaggtga aaaagtattt ttatcttctt gggcgcaaga tatgaattta
      301 agttcagcta taaaatattc taatgttctt gcttttaaag aagtggcaag aagaattggt
      361 atcaaaacta tgcaagaata tttaaacaag cttcattatg gtaatgctaa aatttccaag
      421 atcgatactt tttggcttga caactcacta aaaataagcg ctaaagaaca agcaattttg
      481 ctttttagac tttcacaaaa tagcttacct ttttctcaag aagcaatgaa tagtgttaag
      541 gaaatgattt atttaaaaaa tatggaaaat ttagagcttt ttggaaaaac aggttttaat
      601 gatgagcaaa aaattgcttg gattgtaggt tttgtgtatt taaaagatga aaataaatat
      661 aaggctttcg cgctaaattt agatattgat aaatttgaag atttatataa aagagaaaaa
      721 attttagaaa aatatttaga tgaacttgta aaaaaagtta aaaatgatgg ctagtgagta
      781 tttcgtaaaa tgcaaaaata cttaattgta tgatttgcgt acacttaaag tactcattaa
      841 aaaattaaat ttttgctctt atttatcaag ttttcctacg atgatagggt taaaggcttt
      901 tatggatagc aaaagcgtat cgccgatttt tacatcttga taagctttta gaaattcctc
      961 ttcactaaga gtgattttaa taatatcttg atttaaaagc aaggttaaaa ccactaaaat
     1021 atcacttttt ttaatttcta gcaaagttgc acttaagcgt aattttgcgc tgatatttga
     1081 atgagtaaaa aattcatttt taggaaaatc tttaataatt tttccgtttt taagctctaa
     1141 aattctatga cttaacttat aaatttcagc tagatcatga cttaccaata aagtacttat
     1201 tttaaaatac tctaaaatct tggttaattc atcttgtaaa ttggcacgca ttttaaaatc
     1261 caaagcactc aaaggttcat ctaaaagcaa gatttttggt tctcttgcta aagctcttgc
     1321 taaagctact ctttgtgcct gccccccact taaatgttta ggataaattt tagctaaatt
     1381 ttcaagcttc attaaggcta aaagctcgct aacctttgct ttagaactag cggcataggc
     1441 gatgttttct tttatattca tatttggaaa aagcgcataa tcttgaaaaa caaaaccaat
     1501 ttttcttttt tgtaaagcta aactaaaatt ttttgaagaa tcaaaccaaa gttcattatc
     1561 tacttctata cgccccaatt taggctttat aagtcccgct atgattttta aaagagtggt
     1621 ttttcctgct ccactttcgc caaaaagtgc agtaattttt cctgattcta tatctttttt
     1681 aaaatttaaa tccagtcttc ctttagcggt attcatagga tgattgatat caattcttat
     1741 cattgaaaac tcattttttt attgataaaa taaagactaa aaagtactaa aaaagaaaaa
     1801 ataaacaata taaaagcata ttgatgggct aagctatagt ttaagatttc aagttcatca
     1861 taaatagcta tactagccac taaagtttca ccttgtttat gtcctcctat catcatcacg
     1921 actccaaatt cacccacagt atgggcaaaa ctcatcgcac aagcactaaa aattcctgct
     1981 ttagaattag gtaaaatcac tctaaaaaga gtataaattt tacttttacc taaactataa
     2041 gaagcatcga gcaaatttgg attgatcgat gaaaaggcac tttgcaaagg atttaccata
     2101 aaaggcaaag aaaaaatcaa agaagcaaaa acaagacctt caaaactaaa aaccaaagaa
     2161 agattaaaat attcttttaa aacttgccct aaaaaactat tagccgaaaa agttacaagc
     2221 aaataaaatc ccaaaacact aggaggtaaa atcaaaggca aggaaataaa gctttgaagg
     2281 attgttttaa aaggaaaacg cacaaaactt aacaaataag ctaaaaaaac accgataaaa
     2341 aaaaggataa aagtcgtgat aaaagcaagt ttaaaagtaa gataaagggt ttgtaaaaaa
     2401 gctggatcaa gcactatgac tccttaatac aatatcattt gcttttacaa aacaaagcca
     2461 ttcttgattt tcacaaattt caagttctaa agctttttct ttggtgataa tactagaaag
     2521 ttcattacct ttaaaatcaa aaaatacctg atataaaagt ttgccttttt taatttttgt
     2581 aattttagct aaaaaagaat tttcaacact taaaagagtt ttgcttgcgc taaaacaaag
     2641 ctcatgctct ttaaaaagaa gttctacact cacaccaatt tttaaatttt ctaaagattt
     2701 taattcaagc attaaaacac taaaaatcac ttctttagaa agtattttaa caataactat
     2761 atcctcttga tttaaaagct cacaaatttg tccttttata aggttcatgg tgtgctaaat
     2821 ccgtattttt taaaaatttc ttttgctttt gaagagccaa taaattcgtt aaattcaaag
     2881 gctaattttt tatccttagc gtattttgtg atgacataac tttgctctaa agggctaaaa
     2941 tactttgcat caattataac agccttaccc ttaggatgat tgatagaaga aactaaagaa
     3001 taagccacta tagctatatc tgaatttttg ctatctacat gtaaaacagg cactgagata
     3061 ttttcgccta aaacgatttt atccttaaga agctcattta aacccaaatt ttcaagcact
     3121 tctttagctg ctactccata aggagctact ttaggattgg ctatgcttag atgcgtgatt
     3181 ttgtttgcct tttcttttaa attttcaacg cctccttgga gtaaattttc atccaagcta
     3241 tacaaagcca aaactcccaa aacataaact tttggtttta ttaaagcatt tttatcatca
     3301 taaatagcct tagcatattt agtatccgct gaaaaaaaga gatcaaattc tcttccttgt
     3361 tttaaaagct cataatattt tccagaagca ccaaaaacca attctatttt atcttctgga
     3421 tgtgttttca aaaactcatc tttaacttca ctcatcgcct ttgaagctga agaagctaca
     3481 aaaatactta aattttgcgc atttaaacac gaaacaaaaa gcaaaatccc aaaaaatact
     3541 acaaactttt tcatttagtt ttccttgtgt aaaaatttaa tttttggatt ataacacaaa
     3601 aaattcattt tatatcattt ttgcataaaa taaatacagg atgataagtg agtttgtttt
     3661 gaaatttttc ttcaaattct tttaaaaaac ctttatttaa aggataaaat cctaaagaat
     3721 ttactccgct taattttaaa tgtctaaaaa catctaaagc attatcaaag cttaatttta
     3781 tgagttcttg agtaattttt acttcattaa aatagacttt aaaaatttgc tctaattcat
     3841 ttaagctaaa ataatttaaa ccaaaacccg tgctttgctt gatttctttt aaattttgct
     3901 ctgcaaaagt agaaagaagt aaaatcccat tttgatttag catatctcta agacttggta
     3961 taatgcgttt taaatcaagc cattgcaaag ttgcatttga aacaataaga tcaaatttct
     4021 ctttacttaa atcctgtttt gcaatttcgt tcatatcaaa aattaaaata ctagaatttt
     4081 ctttaaaatc taaaatatcg ttttttaaat actcatcaaa agtaataaaa ttttgaagtt
     4141 ttttgctcaa ttcacccctg ccacaaccaa attcaaatac tttttcaaaa tgtgaaattc
     4201 ttaaattttt taaaatttca caaagtttta aacccataaa atcttgcact tttgcatgtt
     4261 tttcataatc ttttgctttt aaaaaattca aagctcatcc caagttttaa aatgaaaaaa
     4321 agcaaaatgc ggttcattta aaaaaataag ttttgaaaaa gcatttttta aagcatttgg
     4381 tggaaaaatt tcatcttttt tacttgaata aaccttatcc caaagcaaat tttcttcttg
     4441 ttttactaaa gcaaagtcaa aaagtttttc aagctctatt tttaaagctt tttcatcttt
     4501 aaaaataaaa tctttagtta aatttttgcg ttctttaaat aaagcttctt tgaaattttc
     4561 taatttgaaa ttttgcaagg tttttctaaa aattgcagga tgaattcctt ttgatttatc
     4621 tatgcctaaa tttgtgccat ttatggctat tttttgttta aaattaagct cttttaaaag
     4681 tctatttgcc acacaaaccc ccatagaaaa agcgattaaa aaaagttcat caaaagcttt
     4741 gaaatcaaaa tttaaatcaa aattttcata atcataaaat aaaatcacat ttttatcgct
     4801 ttttaaatgc gaaaaatgac tagaatgtga agcaaatccc ccaaatacca ctataagttt
     4861 ttttgaatca ggatttttac ataaaaattc atatttcata aaagctctat tatcctttca
     4921 agttcttctg tgttaagtcc tgcgtgcaaa gaaaaacgaa ttctggctgt attttttggc
     4981 acggtaggtt ctttgatcgc aggagcaaaa aaaccagctt tttgaagttt ttgtgaaatt
     5041 tctaaggctt ttttattttc acctaaaagc aagcaaataa tataagcatc gcctaaaacg
     5101 atgtgatttt tttcttgcaa tttactttta aaaaaagtgc ttaaaagctc taatttttct
     5161 ctttctttct taaaataagg cattttttta aaaataaatt gcgtccaagc tacattaata
     5221 ggtggcaagg ctgtagaata aataaaagct ctagccttgt tgatgaaaaa tttcttatat
     5281 ttttcatcac atattataca agcacccatg gaagcaaggg cttttccaaa ggtaaaaacc
     5341 aaaaaatcca cttcattttc taaggctagt tttttaacaa gccccaaacc ctcttcatca
     5401 aaacaaccca cgctgtgtgc ttcatctata taaagcttaa ttttatcata acgcctttta
     5461 agctcacaca gagttttaaa atcgctaaaa tctccatcca tactaaacaa agcttcgctt
     5521 aaaacgatga tattttcata attttcataa tgtttttgga ttaaactctc taaatgattc
     5581 atatctttat gatgaaaacg aaaaaaatca gccctgccaa gtcttaagcc atcaatcata
     5641 cttgcatgaa taaatttatc ggttagaaaa agcgtcttag aaacgctaga aagtgctgct
     5701 atacaagaga tatttagatg atagccacta ttaaaatgta aaatttcctt atctttaaat
     5761 ttagtcttta aaaaactttc taatttttca taaatttcaa aatttccact caaacttctt
     5821 gaactcgaac ttgaaaaaaa caaatcttgt tcttttaggg tgtttaaaaa ctcagctttt
     5881 aactctttgg aagacgccaa ataaagataa tcatttccta ctaaatttaa aagtttgtga
     5941 tcttgcttat aaacaaattt attttcatgt tttaaaggtg ttagagttct tagattgtga
     6001 ttttgctcta gatcttgcaa aattttttca agcttcattt ttttcctgta aatttaaaaa
     6061 tttaaagtat tattttgcca aaatattttt aaaaaagaag ttataatgca aaatcaaatc
     6121 ttaaaaaatc tcgatttaaa acacatttgg cacccttgca cacaaatgaa agatcacgaa
     6181 accctacctt taattcctat aaaaaaagca aaaggtgtat ggctttatga ttttgatgat
     6241 aaagcttata tggattgtgt gagttcttgg tgggtcaatc tttttggtca ttgtaatgaa
     6301 aaaatcgcaa atgccattaa aaaacaagtt gatgagctag agcatgtgat cttagcaggc
     6361 tttacacatg agcccattat caagctttct gcaagacttt gcgaaaaagt aggcaggaat
     6421 tttaacaaat gtttttatgc agataatgga tcaagtgcta ttgaagtagc acttaaaatg
     6481 agttttcatt atcatttaaa taagggagtg aaaaaaagta aatttttatc tttaagcaat
     6541 tcttatcatg gtgaaacctt aggagcctta agtgtgggcg atgtagcgct ttataaagat
     6601 acttacaaag ccttgctttt agagtgttta agcacgcctg tgccacaagg caaagactac
     6661 actaaagagc ttgaaatttt aaaagatatt ttagaaaaaa atgcaagtga aatttgtgct
     6721 tttatacttg aacccttggt acaatgtgca ggaaatatgc atatgtatga agcaaggttt
     6781 attgatgagg ccataaagct ttgccataaa tttggagtgc aagtgatttt tgatgaaatt
     6841 gcagtgggct ttggacgcac aggaactttg tttgccttac atcaatgcaa acaaagcccc
     6901 gattttatct gcctttcaaa agggataacg ggtggattta tgccactttc tgtagtgctt
     6961 acaagagatg aaatttataa tgctttttat gatacttatg aaagccaaaa ggctttttta
     7021 cattctcata gctatacggg aaatacctta gcttgcgcgg cagcaaatgc ggttttagat
     7081 atctttgagg atgaaaatat tttagtaaaa aatcaaattt taagcgagtt tatcaaaaaa
     7141 gaattttcaa gacttgaaaa atttgacttt ttgggtaatt ttagaacttg cgggatgatc
     7201 agtgcttttg atattttaag caccaagtat aaacgcgtag gactttttgt atttcaaaaa
     7261 gccttagaaa aaggtttgct tttaagacct ttagcaaata cgatttattt tatgcctcct
     7321 tacatcatca caaaagaaca aatcgtttat gtactagaga gtttagagca gatttttaag
     7381 gaattttaag ttgtaaaatt tcttgcattt gctctttaaa atctttattt aaaatgctat
     7441 tttcatcaaa aaaatcaaga ttgattatag gaatttttgc ataatttttt ataaaatcat
     7501 cttgtaagat atctttttta cccatcatta caagggctaa aagattgata tttctttgct
     7561 ttaaagcttc aatgctaagc aagatatgat taatgcttcc aagatagtat tttgctacca
     7621 aaatcgtagg gtgtttgaaa atattcacaa aatcaatcat agtgtaattt tcatccatag
     7681 gagaaaaaag cccacccgca agctcaataa gtaggttttt gctttttggt aaaatgatat
     7741 ctaaggcttt ataatcaagc ttttctttga tttttccaag atgaggagaa gctggagttt
     7801 gcaaaaaaat accttcttta aaaatctttg tttttgggct aaattttgca ataaactcac
     7861 tatctgttgg agttcctgct tgaatgagtt taaaataatc atagttaaaa ttcgcacaaa
     7921 aagctgcact aaaatgtgtt tttcctacat cagtatgtat tccacttaca taaatttgca
     7981 caaaaaatcc tcaagaaaga aattttaaac ccgctgtaca agtaataatc acagcgatta
     8041 aaaaaagttt caaaaaactt ttactttctt tataaaaaag cactcctatc attaccccac
     8101 cagcggttcc agctcctgtc catatagcat aagcaacgct catagcgata ttttgcatac
     8161 ttaagcttaa aaaagtaaaa gaaaatccaa aacacactat caaagctaaa aggtaaagct
     8221 tgtttttagt gcttacaagt tctttcatga tcaccacgcc aaaaatttca caggcagtag
     8281 ctaaaaacaa ataaaaccat tccatagttt aagcttcctt gcttacccat ttaagggcta
     8341 taatacttaa aagtaaaatt gctataagca caagtttaat tatagaaaca gcttcgttaa
     8401 aaataaacat ttcatttaaa accaccccaa tagtgccaat gcctacaaaa acactataag
     8461 taatacttac ttcaagtctt tcgcaagctt ttaaaaagca agtaaaagaa atacaaaccc
     8521 caatggctgt taaaatatac tgccaaattt ctgtagaata tttaagtcca cttacccaaa
     8581 agcactctat aattccacct aagattatta aaaaccaagc tatattaata ttgaattttt
     8641 cattcacatg aagccttaaa ttaacataat atttgtaaaa caaattatat cttaaagaaa
     8701 ttaaaagaag ctataaattt acttttccat aagccaaaat tagatataat caaagctcat
     8761 tttttaagaa aggataaaag atgttagaag gtatcgttag agagagtatc ggtagaaaag
     8821 ctgctaaagc tttaaaaaga gatggttatc taattgcaaa catctatgga aaaggattag
     8881 aaaacatcaa tgccgctttt aaagtaaatg agtttattaa ggaagttcgt aaaaaaacta
     8941 ctttaatttt tgatgtaaaa gtaggttctc aaactttaag cgttgtagtt gtggattatc
     9001 aaaaagatcc tgtaactgca gaacttaaac atgtggattt aaaagttgcg caaaaaggtg
     9061 tgatttctaa atacatggtt ccagttaaaa tcacaggaac agctataggt cttaaaaata
     9121 aaggtgtttt aattcaatca aaaagaagat taaaagtaaa atgtgcagct gaaaatttac
     9181 caaatttctt cgaacttgat gtaagtaaac ttgatgtggg tgatgcttta cttgttcgtg
     9241 atattgtagt tcctgcggga gtaactatga ttgatgctga tagagtagcg gttgtaggtg
     9301 tagaaaaagc tagatgattt tagtcgtagg gcttggcaat ataggcgtag agtatgaaaa
     9361 tacccgtcat aatgtcggtt ttatgctaat tgacttactt ttaaaagaaa gcaattttac
     9421 aaatcttaca aactctaaat ttaaaggaga gctttttaaa ataggttctt ctttacttct
     9481 tcttaaacct agtacttata tgaataattc aggacttagc gtaaaagcag tgaatgattt
     9541 ttataaatgc gaaagaatga tagttatcca tgatgatata gatataaatt taggagcctt
     9601 gcgctttaaa aaaggcggtt caagtggtgg acataatggg cttaaaagca tagatacttt
     9661 atgtggaaat gactatgaaa gagtgcgtat aggagtggga aagggtgaaa atgtgatttc
     9721 ccatgtttta ggtaaattta aatccgaaga agaaataact ttaagcaaag ttttagagca
     9781 tgcaaaaaaa gctttgcttg agcttattga aaatgatgat ttgtctgcta tatcatccaa
     9841 atacagccta aaggcttaag atgtggatat tttttcgttt tatttcaggg atttatttaa
     9901 aaaatttttt tattatattt ttttctttac ttggttt
//
LOCUS       DAPIWJ010000171         6782 bp    DNA     linear   BCT 14-SEP-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate CI_5245
            SAMN06270782-rid18267383.guided.083, whole genome shotgun sequence.
ACCESSION   DAPIWJ010000171 DAPIWJ010000000
VERSION     DAPIWJ010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN06270782
            Sequence Read Archive: SRR5209583
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6782)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6782)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 04-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001768270.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001768270.1
            Genome Coverage       :: 212x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/04/2023 22:52:26
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,716
            CDSs (total)                      :: 1,679
            Genes (coding)                    :: 1,631
            CDSs (with protein)               :: 1,631
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 32
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 41 of 48
            Pseudo Genes (incomplete)         :: 7 of 48
            Pseudo Genes (internal stop)      :: 9 of 48
            Pseudo Genes (multiple problems)  :: 9 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6782
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN06270782-rid18267383.guided.083"
                     /isolate="CI_5245"
                     /isolation_source="Cattle feces"
                     /host="Bos taurus"
                     /db_xref="taxon:197"
                     /country="Canada: Lethbridge, Alberta"
                     /lat_lon="49.6934 N 112.8418 W"
                     /collection_date="2011-11-21"
                     /collected_by="NML@Lethbridge"
     gene            complement(141..1295)
                     /locus_tag="RJ259_001710"
     CDS             complement(141..1295)
                     /locus_tag="RJ259_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate transporter"
                     /protein_id="HDV7367382.1"
                     /translation="MKTLVAFIKDGVKSVTDTAALFVFSILFFSVLNASGFFTKILNA
                     FLSKMKANVYQVCILTVFIAAAVHLDGSGASTFLIVIPALLPIYERLGIRKTSMLLII
                     TSAMGVMNVIPWGGPTLRAATNIGMDANLLWHHIIPIQIVGLVLSLLLAIWIAKIEIK
                     RGAGAGNLSGINLNIEKSEHHNEKWFWLNLLVAIGVIGLLISGIIPSYIYFMIGLAII
                     LPLNYPNLKTAKKVLDRASAGAMLMYITLIGAGILIGVFDKSGIMEKMGVLILNFVPD
                     YLGAYIPLMVGILAVPMAIIFCTDSYFYGVMPIVLSVTKAFGAEPLTIAIIMVIARNC
                     ATFISPVVPATLLGCGLAEVNIKDHIKRSFFYIWGISIICLIFAEVAGII"
     gene            1258..1482
                     /locus_tag="RJ259_001711"
     CDS             1258..1482
                     /locus_tag="RJ259_001711"
                     /inference="COORDINATES: protein motif:HMM:NF015397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="HDV7367383.1"
                     /translation="MTPSLIKATNVLISKTPPLTPEQAHKNAVELAEHTKAWKGHEVL
                     IATHIDKGHIHTHFIVNSVNYENGHKLQWM"
     gene            1534..1908
                     /locus_tag="RJ259_001712"
     CDS             1534..1908
                     /locus_tag="RJ259_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001129922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TnpV protein"
                     /protein_id="HDV7367384.1"
                     /translation="MAKSLFEELGGKYERQGDYLIPCLTVPAEEEQAIGIWGQRHLDY
                     LKQYRKVTYTNLLTSGRLNAYLADINRQAQERFERLIEGMKQAQGITEQLKAENALEW
                     TGCLNNIRACAREIVEKEIIFA"
     gene            2275..4194
                     /gene="tet(O)"
                     /locus_tag="RJ259_001713"
     CDS             2275..4194
                     /gene="tet(O)"
                     /locus_tag="RJ259_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance ribosomal protection
                     protein Tet(O)"
                     /protein_id="HDV7367385.1"
                     /translation="MKIINLGILAHVDAGKTTLTESLLYTSGAIAELGSVDEGTTRTD
                     TMNLERQRGITIQTAVTSFQWEDVKVNIIDTPGHMDFLAEVYRSLSVLDGAVLLVSAK
                     DGIQAQTRILFHALQIMKIPTIFFINKIDQEGIDLPMVYREMKAKLSSEIIVKQKVGQ
                     HPHINVTDNDDMEQWDAVIMGNDELLEKYMSGKPFKMSELEQEENRRFQNGTLFPVYH
                     GSAKNNLGTRQLIEVIASKFYSSTPEGQSELCGQVFKIEYSEKRRRFVYVRIYSGTLH
                     LRDVIRISEKEKIKITEMCVPTNGELYPSDTACSGDIVILPNDVLQLNSILGNEMLLP
                     QRKFIENPLPMLQTTIAVKKPEQREILLGALTEISDGDPLLKYYVDTTTHEIILSFLG
                     NVQMEVICAILEEKYHVEAEIKEPTVIYMERPLRKAEYTIHIEVPPNPFWASVGLSIE
                     PLPIGSGVQYESRVSLGYLNQSFQNAVMEGVLYGCEQGLYGWKVTDCKICFEYGLYYS
                     PVSTPADFRLLSPIVLEQALKKAGTELLEPYLHFEIYAPQEYLSRAYHDAPRYCADIV
                     STQIKNDEVILKGEIPARCIQEYRNDLTCFTNGQGVCLTELKGYQPAIGKFICQPRRP
                     NSRIDKVRHMFHKLA"
     gene            4246..4419
                     /locus_tag="RJ259_001714"
     CDS             4246..4419
                     /locus_tag="RJ259_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich KTR domain-containing protein"
                     /protein_id="HDV7367386.1"
                     /translation="MMKCEWILCPVCGSKTRNKIRKDTVLENYPLYCPKCRQERLIKV
                     DNLKITVIKEPDA"
     gene            complement(4794..6085)
                     /locus_tag="RJ259_001715"
                     /pseudo
     CDS             complement(4794..6085)
                     /locus_tag="RJ259_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001274343.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(6072..6710)
                     /locus_tag="RJ259_001716"
     CDS             complement(6072..6710)
                     /locus_tag="RJ259_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS607-like element ISChh1 family transposase"
                     /protein_id="HDV7367387.1"
                     /translation="MNKLLSIGQASKALGVTIQTLRNWDKKGLLKPDDMTKGGERRYK
                     LETLKAINKNLVFNKDSLKTIAYARVSSHDQKDDLIRQVQVLELYCSKQGFNYEVIQD
                     LGSGMNYYKKGLTKLLNQILDGKVKRLVLTHKDRLLRFGAELVFAICEAKEVEVIIIN
                     KGEESVKFEEELAKDVLEIITVFSARLYGSRSKKNKKLLDEMQEVVVENVSK"
BASE COUNT         2296 a         1178 c         1208 g         2100 t
ORIGIN      
        1 ataagtttaa atttataatt tttctctaaa gcaaaataaa ataatacaaa aaaacgctta
       61 tatttttata aatttttgac tcaaaaatat cataaaacaa tgaaccaatc attgaaaaat
      121 caaaagttct tttattttaa ttatattatc ccagctacct cagcaaaaat caagcaaata
      181 atacttatac cccatatata aaaaaagctt cttttgatat gatctttaat attaacctct
      241 gctaaaccac aacctagcaa agttgcaggc acaacaggag aaataaatgt cgcacaattt
      301 cttgctatca ccatgataat agctatagtc aaaggttcag cgccaaaagc cttagttaca
      361 ctcaaaacta taggcatcac tccataaaaa taagaatctg tacaaaaaat aattgccatt
      421 ggaacagcca atatccctac catcaaagga atataagcgc ctaaataatc tggaacaaaa
      481 tttaaaatca aaacacccat tttctccata ataccacttt tatcaaatac gcctattaat
      541 atcccagcac caattaaagt aatatacata agcattgcac cagcacttgc acgatctaaa
      601 acttttttag ctgtttttaa attaggataa ttaagcggta aaattattgc aagtcctatc
      661 ataaagtaaa tataactagg aataataccg ctaattaaaa gcccaataac tccaatagct
      721 acaagtaaat ttaaccaaaa ccatttttca ttatggtgtt cgcttttttc tatatttaaa
      781 tttattccag acaagttacc tgcgcctgca cctcttttta tttctatctt agcaatccaa
      841 attgccaaaa gaagggataa taccaaacct acaatctgaa taggtataat atggtgccaa
      901 agcaaatttg catccattcc tatattagta gccgctctta aagtaggacc accccaagga
      961 ataacattca taacccccat agccgaagta ataatcaata acattgaagt ctttcttata
     1021 cctaaacgct cataaatagg taataatgca ggtattacaa taagaaaagt agaagcacct
     1081 gaaccatcta aatgcacagc agcagcaata aaaacagtaa gaatgcaaac ttgatataca
     1141 ttagctttca tttttgataa aaatgcattt aaaattttag taaaaaaacc acttgcattt
     1201 aaaacactaa aaaagagtat agaaaaaaca aacaaagctg ccgtatccgt tacgcttttg
     1261 actccatctt taataaaagc aaccaatgtt ttaatatcaa aaacacctcc tttaaccccg
     1321 gagcaggctc acaagaacgc tgtcgagctg gcagagcata caaaggcatg gaaagggcat
     1381 gaagttctga tagccacgca tatagacaag gggcatatac acacgcactt tattgtcaat
     1441 tccgtaaatt atgagaacgg tcataagctc caatggatgt aggacggatt ttgcggacat
     1501 tcaaaataaa aaagaatgtg gaggtaacag acaatggcaa aatcattatt tgaggaactg
     1561 ggcggcaaat acgaaaggca aggggattat ttgataccgt gcttaactgt acccgccgaa
     1621 gaagaacagg caataggcat ctgggggcaa cggcatttag attatctaaa acagtaccgt
     1681 aaagttacat acaccaatct tcttacaagc ggcaggctaa acgcctacct tgccgacatc
     1741 aacagacagg cacaggaacg ctttgaaagg ctcatagagg gtatgaaaca ggcacagggc
     1801 ataacggaac agctaaaggc agaaaacgcc ttagaatgga caggatgcct caataacata
     1861 agggcttgtg cgagggagat tgtggaaaag gaaattattt ttgcataaac agatgattag
     1921 tggcaggggg aaatcctgcc gctttttctg ctttagtttg tcagcttgac aaataaaggg
     1981 ttaaagaata taattagatt cagtattata caaggagtta ataaatatgc ggcaaggtat
     2041 tcttaaataa actgtcaatt tgatagtggg aacaaaaagt agcagtcccg tttcactttt
     2101 aatatggggc ttagtttttt gtacccagtt taagaatact tttatcatgt gattttatat
     2161 gcccgaaaac atataagtgt tttggggcta ttggagttat ttacccagtg ataggagtat
     2221 ttatcactgg gtatttttat gccctttttt gggtgttgat aggaggaaaa tcacatgaaa
     2281 ataattaact taggcattct ggctcacgtt gacgcaggaa agacaacatt aacggaaagt
     2341 ttattgtata ccagtggtgc aattgcagaa ctagggagcg tagatgaagg cacaacaagg
     2401 acagatacaa tgaatttgga gcgtcaaagg ggaatcacta tccagacagc agtgacatct
     2461 tttcagtggg aggatgtaaa agtcaacatt atagatacgc caggccatat ggattttttg
     2521 gcggaagtat accgttcttt atccgtatta gacggagcag tattattagt ttctgcaaag
     2581 gatggcatac aggcacagac ccgtatactg tttcatgcac tacagataat gaagattccg
     2641 acaatttttt tcatcaataa aattgaccaa gaggggattg atttgccaat ggtatatcgg
     2701 gaaatgaaag caaagctttc ttcggaaatt atagtgaagc aaaaggttgg gcagcatccc
     2761 catataaatg taacggacaa tgacgatatg gaacagtggg atgcggtaat tatgggaaac
     2821 gatgaactat tagagaaata tatgtcaggg aaaccgttta aaatgtcaga actggaacag
     2881 gaagaaaaca ggagattcca aaacggaacg ttatttcccg tttatcacgg aagcgctaaa
     2941 aacaatctgg ggactcggca gcttatagaa gtaattgcca gtaaatttta ttcatcaacg
     3001 cctgaaggtc aatctgaact atgcgggcag gtttttaaga ttgaatattc agagaaaagg
     3061 cggcgttttg tttatgtgcg tatatatagc ggaacattgc atttgaggga tgttattaga
     3121 atatctgaaa aagagaaaat aaaaatcaca gagatgtgtg ttccgacaaa cggtgaatta
     3181 tatccatccg atacagcctg ctctggtgat attgtaattt taccaaatga tgttttgcag
     3241 ctaaacagta ttttggggaa cgaaatgctg ttgccgcaga gaaaatttat tgaaaatcct
     3301 ctccctatgc tccaaacaac gattgcagta aagaaacctg aacagcggga aatattgctt
     3361 ggggcactta cagaaatttc agatggcgac cctcttttaa aatattatgt ggatactaca
     3421 acgcatgaga ttatactttc ttttttgggg aatgtgcaga tggaagtcat ttgtgccatc
     3481 cttgaggaaa aatatcatgt ggaggcagaa ataaaagagc ctactgttat atatatggaa
     3541 agaccgctta gaaaagcaga atataccatc cacatagaag tcccgccaaa tcctttctgg
     3601 gcttctgtcg ggttgtccat agagccgctc cctattggaa gcggagtgca gtatgaaagc
     3661 agagtttcac ttggatattt aaatcaatcg ttccaaaatg cggttatgga gggggttctt
     3721 tatggctgcg agcaggggct gtatggatgg aaagtgacag actgtaaaat ctgttttgaa
     3781 tatggattgt attatagtcc tgtaagtacc cccgcagact ttcggctgct ttcccctatc
     3841 gtattggagc aggctttaaa aaaagcaggg acagaactat tagagccata tctccacttt
     3901 gaaatttatg caccgcagga atatctctca cgggcgtatc atgatgctcc aaggtattgt
     3961 gcagatattg taagtactca gataaagaat gacgaggtca ttctgaaagg agaaatccct
     4021 gctagatgta ttcaagaata caggaacgat ttaacttgtt tcacaaatgg gcagggagtc
     4081 tgcttgacag agttaaaagg ataccagcca gctattggta aatttatttg ccaaccccgc
     4141 cgcccgaata gccgtataga taaggttcgg catatgttcc acaagttagc ttaacagctt
     4201 gcaaaagtca tataaaatga gatttgaaag gattagagac taattatgat gaaatgcgaa
     4261 tggatattgt gtcctgtttg tgggagcaaa acccgtaata aaattaggaa ggacactgtt
     4321 ttggagaatt atccccttta ttgtccaaaa tgcagacaag aaagattgat taaagttgac
     4381 aacttgaaga taactgtcat caaagagcca gacgcttaag acgcagagcc gatgaaattg
     4441 tggaacaatt cacgaatcat cggctctttt tgtttcgtat ttgaaagaac aaactcacca
     4501 aataaaaaaa acgatattcg ggtgggttat tttgttatac cctaaattac cctctgagta
     4561 agcacgacct taaagactta aaggaacggt gcaacgagca gagctgggaa cagggcttgc
     4621 atgtgccgga gaaaggaaag acatttgctg gagaagtccg ggaagaaacg gtggcatgga
     4681 gcaaagacac ctaccagctt ttgaaacagg cagagcaggg aaaggtcaaa agctatgtgc
     4741 aggatattgc cgttcctaca aacctataaa atcctataaa aagatataaa actctataaa
     4801 taggattttt gttgtattcc tgtttcaacc ttgctagttg ctatttgatt tattgctaaa
     4861 tcatttaaca gagctgtcaa gtccgcaggc gtaaattcgg caagaacttt gcctattttt
     4921 gctttaattg tgaaagcaaa ttaagactag cattgtagtc tctatcaatg ctaattccac
     4981 attcatcgca aatataaact ctatctttta gagctaaatt ttcttttata gttccacaat
     5041 tagagcataa tttagaacta ggataaaatc tatctacttg atagatttct ttatcgttgt
     5101 agctagattt atattctagt tgccttttaa actcataaaa acttacatcg cttatagatt
     5161 tagcaagtct atgattactc atcatccctt ttacatttaa atcctctaag caaaaatatt
     5221 tagcatttgc taccaagcta gaagtaagct tgtgtaaaaa atcacttctt atatttgcta
     5281 ttttacgatg caatttattt agcttaatac ttgcttttag ataattgcta gattttttaa
     5341 tgccttgtaa tgcttcttgc ttggtttttg cgtgttgctt tttgcttagc tgtctagctc
     5401 tttttatcat taaacgatta aacttagcta atggtttagg tgcttttatc tctaagccat
     5461 tagataaact taaaaacgat tttaagccta catctatgct aagtgctaga ttattatttt
     5521 tagctttatt atgagttttt agatactcat ctttactaat ttgcatacta aaagaaacaa
     5581 agaatttatc agcactttga gaaatagtaa aagaattgat tttaccatta aatctcaatt
     5641 tctctttcat ttttacaagt cctaaatttg gcacttttag atatttttca tctttgatta
     5701 ttgcttggtc tccacctatg taataagagc cgaaattatc tttctttttc ttaaattttg
     5761 gatagcttac tttaccttgt tttaaatctc taaaaaattt ttgaaatgct agatttagat
     5821 ttaaaaaagg ctgttgcgta gcatatttac ttacttcata aacgaaagga aattgttctt
     5881 tttttataac attaaactct tttttaagct ctaaatgaga ttttttaatg ccttgcttat
     5941 agtattcttg ccatttagca agtccccaat tataagcaag tctagcacaa ccaaaggctt
     6001 ttttaaaatg agttttagct ttattatttg gctttaactc tatcttatga gaaatgctaa
     6061 taagctcatt attatttgct gacattttct accaccactt cttgcatttc atctaaaagt
     6121 tttttatttt tctttgagcg tgagccataa agtctagctg aaaatactgt gattatttcc
     6181 aacacatctt tggctaattc ttcttcaaat tttacgcttt cttcgccttt atttattatt
     6241 attacttcta cttctttggc ttcacatata gcaaatacta gctcagcacc aaagcgtaaa
     6301 agtctgtctt tgtgagttaa aactaatctt tttactttgc catctagaat ttgatttagc
     6361 aatttagtta agcctttttt ataataattc ataccagagc ctaaatcttg tataacttca
     6421 taattaaagc cttgtttaga acaatatagc tctaagactt gaacttgcct tattaaatca
     6481 tctttttggt cgtggctaga aacacgagca taagcaatag tttttaagct atctttatta
     6541 aaaactaggt ttttatttat agcttttaat gtttctagct tatacctacg ctctccaccc
     6601 ttagtcatat catcaggttt taataagcct tttttatccc aatttctaag agtttggata
     6661 gtaacaccaa gagctttact agcttgaccg attgataata atttattcat aggactattt
     6721 tagcaaattt taaaaaataa gtcaagtaaa atctataaaa tatttatata attttataga
     6781 tt
//
